Possible Orthologs for dme-mir-4946

droSim1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:18557325-18557471 -

89.92

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATAACAAAACGCTCATTTGCTGCAAATAAGAAACAAATATTTTCAGTTGTTCATTGCAAGTTAATTTATAAACATTGCTATGAAATCAATTGAAAATATAATTGTATCCCAGGCTTATCAGCTGCAATCCCCCCAAGAAGGG

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chrX_random:847764-847879 +

43.45

TAAAAATAAAAAAATGCTCGATTGCTGCA------ACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTTGAATAGAAAAGTCCACAACCGCGAAAGTTTCTTTTAAGTTAATAGAGCTTTCAAATCTGCTTTAGAACCAAATCTATACTGATGGCTTGGAAACTGTTAAAAAGTATAATTGT-------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chrX:4826746-4826855 -

43.07

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TCATAATAACGAAATCCCCCACTAAACCAGAGTAATAAAAGTTTTGTAGATTTTTTAATTTCAAAT------------------------------------TTAAAGGCAGCACAAGAATTTCATTTCAAATGCATTCGTTT-GCT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................TAAAATTTTTGTAGAATT..............................................................................................	18	1	9.00	0.00	0.00	8.00	1.00
...................................TAAAATTTTTGTAGAATTT.............................................................................................	19	1	3.00	0.00	2.00	1.00	0.00
....................................AAAATTTTTGTAGAATTT.............................................................................................	18	1	3.00	0.00	1.00	2.00	0.00
...................................TAAAATTTTTGTAGAATTTT............................................................................................	20	1	2.00	0.00	0.00	1.00	1.00
..........................................TTTGTxGATTTTTTAACTT......................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

chr2L:18557314-18557446 -

42.38

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG-----------
T-------------------------GCAAATAAGAAACAAATATTTTCAGTTGTTCATTGCAAGTTAATTTATAAACATTGCTATGAAATCAATTGAAAATATAATTGTATCCCAGGCTTATCAGCTGCAATCCCCCCAAGAAGGGTATAAGAAAAA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2L:18462522-18462684 +

41.51

TAAAAATAAAAAAATGCTCGATTG-CTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTT-----ATGTACATTGCTATGAAATCAATTG--------------AAAATATAATTGTATCCT-AGGCTTAT---CAGCTGCAATGCCTCTATGAAGGG GCATATTAGAATAATTTTTGAGTAGCTCCT----ATAAACAAATTTCC--ATTGAGAGTCTGCATAATTACTTAGCCAATTAATAAGGGTCTTCAAACACTCCAGTAAAATGCAGGCCCAGCATGACGCCGCCCACAAGTCTGCCCGCAAAATCAAGGTCA--CTAAACAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........ATAATTTTTxAGTAGCGCC..............................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.........AATAATTTTTxAGTAGCGCC..............................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.........AATAATTTTTxAGTAGTTCC..............................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

chr2R:6648841-6648939 -

39.49

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TATAAATAAAAAGTTATCATATAATCACTTCTAAATCACAAATTTTTTT---TATTGATTATTTAATAGTCTGTTAAGCTTGCCGTACTATCAAATGAAACT---------------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................AATCACAAACTTTTTT---TTTT...........................................................................................	20	1	1.00	1.00	0.00	0.00	0.00

chrX:10690067-10690135 -

27.19

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAAT-CAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCT-CTATGAAGGG
T-------------------------------------------------------------------------------TGCAATCAAATGCACTTTAAAAAAGCGCAGTGCTCT-TGCTTGCGAGTCGAGAGGCCTACTCTTGAGCC

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3R:9370617-9370681 -

21.38

TAAA-AATAAAAAAATGCTCG-----------ATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAGTGATGACAAAGAACTTACCCTGCCAGCTATTGTTGAAGTTAAGCAGGAAGAGCTCTCCATT----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.AAGCGATGACAACGAACTT...........................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

chr3L:8659111-8659126 -

6.21

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GATAATTATGAATAGG-----------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chr3L:10109791-10109797 -

4.14

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGAAAAT--------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chr3R:5948744-5948748 +

3.45

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
----------------------------------------------------------------------------------------------------------------------------------------------AAGGG

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

102

chrX_random:2896377-2896382 -

3.45

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
---------------------------------------------------------------------------------------------------------------------------------------------GAAAGG

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

droSec1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

110

super_7:2494148-2494294 -

88.57

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAATAACAAAACGTTCATTTGCTGATAATAAGAAACAAATATCTTAAGATGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATCCCCCCAAGAAGGG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................................................GTATGTAGATTGCTATGA...........................................................	18	1	1.00	0.00	1.00	0.00

153

super_25:450015-450165 -

47.72

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAA-ACAAATATTTTCAGTTGTTCATTGCAAATTAA-----TTTATGTACATTGCTATGAAAT--------CAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGGATTTATTCCAGTACCTAATTACAGCTACTAAGTACAAAAATGCGTACAATTATTTAACCCCAATAAACAAGTTTAATCCACATTGCCATTGAACGCTTATATAAATTACAAAAA---GCACTTTACAAGCCCATC-------ATAAATCCATAGAAAT

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_1:11729166-11729307 -

45.11

TAAAAATAAAAAAATGCTC---GATTGCTGCAA----CTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTT-----------ATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAAAAAAAACAAGCTAAAAGCTTGTTATATTTGATTACACAATTCCCAAATGCATTATCTTATTGATAATAGAACTAAGTGCTAGAGCTGCATATTGTCATTTACTTAATTTT------------AAACCAGTTTTATTCGCTT-----------CGAAAGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....ACAAAAACTAGCTAAAAG..............................................................................................................................................	18	1	1.00	0.00	1.00	0.00
....AACAAAAACTAGCTAAAA...............................................................................................................................................	18	1	1.00	0.00	1.00	0.00
.......AAAGATAAGCTAAAAGCT............................................................................................................................................	18	1	1.00	1.00	0.00	0.00

108

super_5:5189987-5190111 -

44.57

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTA----ATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAGTTTAGCACTCCTT------TAAAACTAAAAACGATGTATTTTAA-----TAATTACAAGCTGTGAAATT----TACA---CTTTTATCTCAACTAAA-ATAATTCTGTTTGCTACAATTTTCGTATGCA-------CACATGGGG

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

135

super_13:1981689-1981793 -

33.6

TAAAAATAAAAAAAT-GCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGA--AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AACATTTAAGAGAACTG------------AACGTTGATTTAATTATAG---------TTTGGCCAATCAATCAAAGTCCTACTTTTTGAAAGTAACAATACACAGTTAATTCTAACTTTAGCTGAT------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......CAGAxAACTG------------AACGTTGAT................................................................................................................	18	1	1.00	0.00	1.00	0.00
......TCAGAxAACTG------------AACGTTGAT................................................................................................................	19	1	1.00	0.00	1.00	0.00
........AGAxAACTG------------AACGTTGATC...............................................................................................................	18	1	1.00	0.00	1.00	0.00

super_21:516432-516495 +

26.21

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GAAAAATATATAAACATTTATTTGCTGTGGGCTTGCAACGAGTATTTTAATTGGATTATGGCGA-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........TTTAGACATTTATTTGCT.........................................................................................................................	18	1	1.00	0.00	1.00	0.00

super_14:1565999-1566005 +

4.14

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAAAAT--------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_4:1674430-1674430 +

0.69

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
--------------------------------------------------------------------------------------------------------------------------------------------------G

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

droYak2 - 35 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

400

chr2R:5382904-5383074 -

60.0

TAAAAATAAAAAA------------ATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGT--------------------ATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAATAACAAAGCATATTAGCATA--------TGCTGCAAACAATAAATAAATATTTTCAGCTGTGCATTGCAAATTAATGTATTTACATAGCTATGAAAGCAATTGAAACGACAATTGCAGGTCATTTTTATTGCACACATCCTAGGCTTATCAGTGGCAATGCCCCTACGAAGAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..............................................................................................................AACGACAATTGxATGTCAT..................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................................................ATGAAAGCAATCGAATCGA................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

222

chrUh:207542-207674 +

52.61

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATA-TTTTCAGTTGTTCATTGCAAAT-TAATTTATGTACATTGCTATGAAATCAATTGAAAATATA-ATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTATATTATTAAAATGCCAGTTTATCGCAGTAATGAAAATGTGGCTTTTGAAATCCCCATTCAAGATCCGTTCTGTGGACTTTGCCACGAGGT-AATGGAACATATTGATTTAATTGCA--GTTTTGCGCTGCAAT--------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................................................G-AATGGAACATATTGAGTT......................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

350

chr2h_random:3356702-3356844 -

51.28

TAAAAATAAAAAAATGCTCGATTGC-TGCAACTAAGAAACAAAT-ATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTTAAATAAGTGTATGTTCAAATAGCGTCGA-GAATATTAAATTAAGCTGGAGAGTATTTTTGCAAATT-TTGTATCTACTTCTATTTGGAACCACTTTCA----GAATTAAAACCATATATAATCATATAAAACCGCTATAGTCAAGT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................TATTTTTGAAAATT-TGGT...........................................................................	18	4	0.25	0.00	0.00	0.25	0.00	0.00
..........................................TTAAGCTGGAGAGxATTCTT.......................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................................ATAATCATATCAAACTGC...........	18	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................................GTATTTTTGAAAATT-TTGT...........................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

712

chrX:17622137-17622282 -

50.0

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGT------------------TCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAA--AATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
A-----TGAAAAAATGTTTCC-----TGATCTAAGCTAAATATATTTAAGGCTATGAAAATGCTTTAAGATTTAACATGCA---------ACGTA-TTTGCTATGATGTGATATTATAATATCCAACCGTAACTCTGTCTAA--AATAGTAATATTTGCTTAACAAC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3L:10482688-10482827 +

47.61

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAG-----CTGCAATGCCTCTATGAAGGG TTATAATAAAATGTTGTTTCCTAATT-TG-ATAAGAAATAAAA--TGTAAAGAATATAGCGCAGAAACATTTAAACATATTTTTTGTAAACTGTCTCACAGCTTAAACTTGTTTTAAATTTTTTCTCAGTTTTCCAATGCCTTT--------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
....................................................................................................................AATTTTTACTAAGTTTTCCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00

481

chr3R:15891458-15891589 -

47.41

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAA--TATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGA-AGGG ---------------GCGAGATAGCTGCGGCTCAGGAATGC-GGTTTTGACAAGTTCTTCTAAAATTGTACGGGCAACTTTGCTATTTACGCTATGAAACAACAACAACTACAACAGC--AGCAACAACAACAACAGCACGGCGAGAGAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................................................CAACAGC--AGCCACAACAACATCAGCA...........	26	7	1.14	0.29	0.00	0.86	0.00	0.00
...................................................................................................................AGC--AGCAACAACCACAACAGCA...........	22	14	0.07	0.00	0.00	0.07	0.00	0.00
..........................................................................................................................CAACAACAACAACAGTGCGGC.......	21	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................................................CTACAACTACAACAGC--AGCAA.........................	21	4	0.25	0.00	0.00	0.25	0.00	0.00
...................................................................................................................AGC--AGCAACCACAACCAC...............	18	25	0.04	0.04	0.00	0.00	0.00	0.00
...................................................................................................................AGC--AGCAATAACAACGACA..............	19	27	0.04	0.04	0.00	0.00	0.00	0.00
...............................................................................................................CAACAGC--AGCCACAACCAC..................	19	18	0.06	0.06	0.00	0.00	0.00	0.00
.................................................................................................................ACAGC--AGCCACAACAACATCAGCA...........	24	8	0.13	0.13	0.00	0.00	0.00	0.00
.....................................................................................................ACTACAACTACAACAGC--AGCAACA.......................	24	2	0.50	0.00	0.00	0.50	0.00	0.00
..................................................................................................................CACC--AGGAACAACAACAACAGCA...........	23	11	0.09	0.00	0.00	0.09	0.00	0.00
...............................................................................................................CAACAGC--AGCCACAACAACA.................	20	12	0.08	0.08	0.00	0.00	0.00	0.00
..................................................................................................AGAACAACAACAACAACAGC--..............................	20	48	0.02	0.00	0.00	0.00	0.00	0.02
....................................................................................................AACAACAACTACCGCAGC--AGCA..........................	22	15	0.07	0.00	0.00	0.07	0.00	0.00
...........................................................................................................................AACAACAACAACAGTGCGGC.......	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................CAACAACAACTACAACAGC--AGCAGCA.......................	26	36	0.03	0.00	0.00	0.03	0.00	0.00
........................................................................................................................AGCAACAACAACCAGAGCA...........	19	17	0.06	0.00	0.00	0.06	0.00	0.00
................................................................................................CAACAACTACAACTACAACAGC--AGCAACA.......................	29	2	0.50	0.00	0.00	0.50	0.00	0.00
...............................................................................................................CAACAGC--AGCCACAACAACATC...............	22	19	0.05	0.00	0.00	0.05	0.00	0.00
...................................................................................................CAACAACAACAACAACAGC--AGCAA.........................	24	19	0.05	0.00	0.00	0.05	0.00	0.00
...............................................................................................................CAACAGC--AGCCACAACAACAT................	21	22	0.05	0.00	0.00	0.05	0.00	0.00
................................................................................................................AAGAAC--AGCAACAACAACAACA..............	22	27	0.04	0.00	0.00	0.04	0.00	0.00

229

chrX:3369726-3369876 +

47.41

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAAT--------ATTTTCAGTTGTTCATTGC-----AAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAGTATAAATATAAAAGCTTTCAACCAAAAAGGTACGAATCTCCACGTGTTTTTGGCTCTTAACTATTAAAACAAATAATATGAAGAAATTGCCAATAAAT--GTTGAAGATTCAGTGATAAACCTTACT-------GAAAATGGATTTTCGACGCG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............TATAAAAGCTTTCAACCAAAA...............................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................ATAAAT--GTTGAAGATTCAGT........................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................TTTCGACGTGTTTTTGGCTC..................................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................TCGACGTGTTTTTGGCTC..................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................................TGCCAATAAAT--GTTGAAGATTCAG.........................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................................AAAT--GTTGAAGATTCAGTGAT.....................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

376

chr2L:19140227-19140358 -

46.53

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTA------TGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GAAAAATAAGAAAGCTTTACAGTGTTTGG---CATAAACGAGTCTTCACTATAATTTGAAGGAAGCAAATCTGAGAAGAACTCAGTCTGAACTGAATCTATAGACTGTTTATTACATTCCCGGCATTTTCTGCTG------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3L:8532425-8532540 +

46.0

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAATATTATAAAG-----------TTGCTAATAAGAAATAGATACCTTGATATGTTGTTTGAAACTAGCTCAAAATATACTGCTTT---CTTAATTAATAATAATAATATATTTCTTGTTC-CTCGTTGCA----------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

523

chrU:1737452-1737610 -

44.18

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCA---------------------------GTT-GTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTTAAATCAATTAATTCAGGATAATTAAATCCCAACAACAATTCCTCTGGGCCCATAGGATGGATTTGGGTAAGTAAATTTA-TTATTTTCTT----TTTATTTACACTTGC----------TTATGTGAACATTTATCTACAAATCCATACATACTTAATA-CCCTATAAATTA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................CGGATGGATTTGAGTAAG.....................................................................................................	18	2	19.50	0.00	1.50	7.50	6.50	4.00
.......................................................TCGGATGGATTTGAGTAAG.....................................................................................................	19	2	13.50	0.00	0.00	12.00	1.50	0.00
.........................................................GGATGGATTTGAGTAAGA....................................................................................................	18	2	5.50	0.00	0.50	5.00	0.00	0.00
.......................................................TCGGATGGATTTGAGTAA......................................................................................................	18	2	1.50	0.00	0.00	0.50	1.00	0.00
.........................................................GGATGGATTTGAGTAAG.....................................................................................................	17	2	1.50	0.00	0.00	0.00	1.50	0.00
..........................................................GATGGATTTGAGTAAGA....................................................................................................	17	2	1.00	0.00	0.00	0.00	1.00	0.00
........................................................CGGATGGATTTGAGTAA......................................................................................................	17	2	0.50	0.00	0.00	0.00	0.50	0.00
..........................................................GATGGATTTGGGTAAGAG...................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
.......................................................TCGGATGGATTTGGGTAAG.....................................................................................................	19	2	0.50	0.00	0.00	0.00	0.50	0.00
........................................................CGGATGGATTTGGGTAAG.....................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
.......................................................TTGGATGGATTTGAGTAAG.....................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00	0.00
........................................................AGGATGGATTTGAGTAAG.....................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
......................................................ATATGATGGGTTTGGGT........................................................................................................	17	2	0.50	0.00	0.00	0.00	0.50	0.00

294

chrX:13127773-13127885 +

41.64

TAAAAATAAAAAAATGC-TCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAG-GG AAACCACGCACAAGTATATTTATAGAGCCCATTGCGAAACTAA--TTATTATTTGTTCTTATCAAATTATTATTT--------ATATCAAATTAAA------TA----------TAGAGCTTAT--------ATGCT--TATGCGGTGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................TTAGTATCTGTTCTTATCA.....................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00

564

chrU:21619391-21619558 -

38.62

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTA--------------------------------------------TCAGCTGCAA-TGCCTCTATGAAG-------GG TTAGTACAACATAATTTCCGAAT----TAATTATTAGGTAAATGTCTATTGA---------------------------ATGTATTCTAACTAAAGTAAAATATAAAACAGTCCCGGTTCAATAAATACTATATTTTTTAATTTAAATTAAATAAGTCCATAAATTTCAGTATCAGTTGCCTTTGTGGATTTCTCCTGG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................................................................................................AATTTCAGTATCTATTGCC..................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................GTAAATGTGTxTTGA---------------------------ATGTA...................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................................................................................................AATTCCATAGATTTCAGTA...........................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

736

chrX:21432267-21432437 -

37.53

TAAAAATAAAAAAA--------------TGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT-----TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTT----------------ATCAGCTGCAATGCCTCTATGAAGG-G CGGGAGTTAAACAAGGCGGTTTCTGAATTGTTTTGTTATTTTTATTGGTATAGTACTAT-TTTTGTTAACTTCTGTAAAATAATTTAGTATACAAACACTGCCACAAAATCATTTG---------TTGTTTGCTTAGATTAGAAAAAGCATACAACATTAGAGGCA--GCCTTTACGAAAATA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................................................AAATCATTTG---------AAGTTTGCT.................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................TTTGTTATTATTATTGGTT.....................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
............................TATTTTGTTATTATTATTGGT......................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

113

chr3L:23611936-23612042 +

36.59

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAA-------------TTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAACTTTGGCGAATGCT------------CTTACAAAGATATATTGTGCGTAAAGGGTAATAAAGTAATTGCGAAAATATATGTATGGAGATAGTTA--AGTTGAGTTTAAAACGTAATT---------------------------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................GATTTATTGGGCGTAAAG........................................................................................................	18	1	2.00	0.00	1.00	0.00	1.00	0.00
................................................GGGTAACGGGTAATAAA...............................................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................................................................GTTGAGGTTAAAACGTT..........................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00

428

chr3L:3454877-3454993 -

34.28

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTAT----GTACATTGCTATGAAATCAAT--T--GAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAAAT-----------CTGA-----------------------CACACAGCTGTTTAACATATGTTAATATATTAATATATACTAT-ATATATCTA-CTTTGGGAGTACACAAATCATTTTAAAACCAATAAATTGCAA--TTTTAAAGAAAAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................................................................................................................AAACTGCAA--TTTTAAAGT....	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................................................AAATTGCAA--TTTTGAAGG....	18	1	1.00	0.00	0.00	0.00	1.00	0.00

153

chr3R:24840845-24840942 +

31.72

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTA--TGAAATCAATTGAAAATATAATTGTATCCTAGGCT-----TATCAGCTGCAATGCCTCTATGAAGGG
CAA--------------------------------------------------------TGCAGAGCAGTTCAACAACAAAGCCAAACGAAACGAAACGAAACGTTTTTCATAACTTAAATTGCAAAATGCAGCCAGCAAGGGGTTATGAGTAA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

646

chrX:12551308-12551390 -

31.03

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAA-------GAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGATTTTCTTAGAATTTTTATTTATTTTTATTTAGCATATAAAAATAAATATATTAAGTTGTTCA-----------------------------------------------------------------------CAATAACTTTATTAATTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................ATAAAATTAAATATATTAAGT...............................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

579

chrU:26859802-26859882 -

28.53

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CATTATA----------------------------AATCGGATTTTATTACTAGTGCATATAAAAA--------------------------------------TTCTTAAAACTAGGCATATAAAATAAATTGGAATGAAAAAGTG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..TTATA----------------------------AATCGGATTTTATTACTAGTGC..........................................................................................	27	1	4.00	1.00	0.00	3.00	0.00	0.00
..TTATA----------------------------AATCGGATTTTATTACTAGTGCA.........................................................................................	28	1	2.00	0.00	0.00	2.00	0.00	0.00
...TATA----------------------------AATCGGATTTTATTACTAGTGCATA.......................................................................................	29	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................................................................................................AATGG	22	18	0.06	0.00	0.00	0.00	0.06	0.00
..TTATA----------------------------AATCGGATTTTATTACTAGT............................................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TATAAAAA--------------------------------------TTCTGAAAACT................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00

chr2L:21705590-21705652 +

28.28

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG -------------------------------------ACAATTATTTTAAGTTGTTACGAAAAACGTGATTCACGGACCATGCGGTGAACTAAATTTAGA-----------------------------------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................................TTACGAAAACCGTGAATC...........................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

242

chrX:6552689-6552764 +

27.82

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CGAAAATGCAAAAAATTTCAATTTTTTTTTTCGAAAATCTAATAAGTTGTGATAGACATAGTTAGCTATGTTTATT-----------------------------------------------------------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............AGTTGCAATTTTTTTTTT....................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
.............................................GTAGGGATAGACATAGTTAGCTAT..............................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................TATGxGATAGACATAGTTAGCTATGT............................................................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00

513

chr3R_random:1345172-1345239 -

23.99

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGCGAATAAAATA----------------ACTAAGCAACTAAAGTGTCCATA-----------------------TGGTTTTCCAAGAAATCCTTATAATATACATT----------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2 - 19 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

112

scaffold_4845:5409251-5409398 +

61.6

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGT--------------------ATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TACAAGTAACAAAGTGCTAATTCGCTGCAAATAGGAAATAAATATTTTCAT---------------TA--TTAT-CACATTGCCA-GAAACCAATTGAAAAGATAATTGTAGGCCACTTTTGTTGCACGCATCCTAGGCTTATCAGCTGATATGCCCCCACGAAGGG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................................TAGATATCTTCAT---------------TA--TTAT-............................................................................................	19	1	2.00	2.00	0.00	0.00	0.00
................................................CCT---------------TA--TTAT-CACxTTGCCA-.................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................TGCAAATAGGAAATCAAC............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......AACAAAGTACxAATTCGCTG............................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

134

scaffold_4929:1173390-1173529 +

48.89

TAAAAATAAAAAAATGCT-----------------------------CGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTT-----------ATCAGCTGCAATGCCTCTATGAAGGG TATAAATAT------GTTCTAATCTATTTTACCTTGCTGATGGGTAGCATTTATTATAACTTTGTA---ATCATTTTGAACAATTTATTACAAATAT---------------C-------------TTAAAACATTTGTATTGTAAGTTTGTATCACACATATTAATTATAA----------TAGAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
................................................................................................................................AAAACATTGGTTTTGTAA.........................................	18	1	3.00	0.00	0.00	0.00	3.00
.................................................................................................................................AAACATTGGTATTGTAAA........................................	18	1	2.00	0.00	0.00	0.00	2.00
..............................................................TGTA---ATCATTTTGAAxAATTGAT...................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................AAAACATTTGTxTTGTAAA........................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................TAAGTTTGTA---ATCAGTTT..............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................AAACATTGGTATTGTAAAT.......................................	19	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................................AAAACATTGGTATTGTAAA........................................	19	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................................................TAAAAACATTGGTATTGTA..........................................	19	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................................................TAAAAACATTGGTATTGT...........................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................AAACATTTGTTTTGTAAA........................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4690:16185167-16185305 +

48.56

TAAA--AATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAATTTAATAAATATAAATTTAATAAGTATAAATATAAATGTAATATATATAAAT--TTAATAAATATAAA----TGTAATATATTATAT----ATATGTAAATAAATATAAATAGAATTTTAATAAACATAAATACAAATTTAAAAAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............ATAAATTTTATAAGCATA......................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................CATGGAAATAAATATAAAT...................................	19	1	1.00	0.00	0.00	0.00	1.00

214

scaffold_4770:12582336-12582489 -

46.2

TAA---------AAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTA-----TGAAGGG TTCCTCCGCAGTCATTCATATAATGCATTTTCGCATTACACAAAATTCGGATTATTTAGTTTATTGATTTC--ATTAGCTTATTCG-ATTGG-GCTTAATAAATTGATAATTTCAAA--ATGAAAAGCTTA-AAGCCGAATTGCCTCCAATCCCTACAAGT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................AAACACAATTCGGATTAT..........................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00

264

scaffold_4929:11900328-11900445 -

44.45

TAAAAATAAAAA----------AATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT---TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CAGAAATAAACAATCCAGTGAATAGACACAAAAATAACAACCAAAAACGAAGATTTTTCTTTTTTATTTTCGCTTATAATTTTTTAACGAGAAAATATTGGAATGAAATAAAAATATA------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................................TTTTATTTTGGCTTAAAA.................................................................................	18	1	4.00	1.00	0.00	0.00	3.00
........................GACACAAGAAGAACAACC......................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..................................................AGAATTTTCTTTTTCATT............................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

138

scaffold_4929:6472372-6472471 +

38.95

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAA-------ATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TCTC--TAAAAAACTGC------ATTAAAATTTAAAAATTTATTTTTTTTGTAATTTTTTGCAATTTTTTTTATGTATGATGTTGTAGAAATTCAAAACAATTAAAAA----------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................................GATGTTTGATGTTGTAGAAATT.............................................................	22	4	0.25	0.00	0.00	0.00	0.25
.........................................................................GTTATGATGTTGTAGAAATT.............................................................	20	4	0.25	0.00	0.00	0.00	0.25
.........................................................................TGTATGATGTTGTAGAAATT.............................................................	20	4	0.25	0.00	0.00	0.00	0.25
......................................................................TGATGTATGATATTGTAGAAATT.............................................................	23	4	0.25	0.00	0.00	0.00	0.25
.........................TTTAATTTAAAAATTTATT..............................................................................................................	19	11	0.09	0.09	0.00	0.00	0.00
...............................................................................ATGTTGTAGAAATTCAAAAAA......................................................	21	9	0.11	0.00	0.00	0.00	0.11
................................................................................TGTTGTAGTAATTCAAAAAAATTA..................................................	24	1	1.00	0.00	0.00	0.00	1.00
.......................................................................GATGTATGAAGTTGTAGAAAT..............................................................	21	4	0.25	0.00	0.00	0.00	0.25
............................................................................ATAATGTTGTAGAAATTCAAAAAA......................................................	24	3	0.33	0.00	0.00	0.00	0.33
..............................................................................GATGTTGTAGAAATTCAAAAAT......................................................	22	5	0.20	0.00	0.00	0.00	0.20
.........................................ATTTTTTTTGTGATTTTTTGCC...........................................................................................	22	1	1.00	0.00	0.00	0.00	1.00

scaffold_4690:12870986-12871107 +

35.51

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATA--ATTGTATCCTAGGCTTATCAG---CTGCAATGCCTCTATGAAGGG TATGAATTGT---TTAATTAATGATGGCGTCTTAAAATTAGGTTTCTTATA---------------------------TTTGCATTAGGATTAGGTGGAACTAGTTCGAAGGACTCTGAACTAATCGAAGTCTGCCCAGACCCAAGAAAAGG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................................................................TCGAAxTCTGCCCATACCCA........	19	1	1.00	1.00	0.00	0.00	0.00

254

scaffold_4929:6649430-6649526 -

35.42

TAAAAATAAAAAAATGCTCGA---------TTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGC-TGCAATGCCTCTATGAAGGG GCGAATTGAATTGAAGCGCATTGTGTAAATCAGCGGCTCAATAAAATCTAATAGCCCCGGCAGATTGCGGCT------------------------------------------------------------CGGCACGCACCGCACCAAGGCAACA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........TTGACGCGCATTGTGAAA.................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....ATTGAATTGAAACGTATT.......................................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33

231

scaffold_4845:6791099-6791185 -

34.0

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GAAAAATAGGTTAAATTTCAATTTTCACTTTTGTAAAAAAGTTTTTTTCATTTCCTCACTCTAAATAAT--------------TATTATATGGATTTGAAA----------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

227

scaffold_4784:17705433-17705519 -

30.28

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CAAACACATTTGA--------------------TGCACAATACATTTTTAGATGTACAAAAAAATATTTTTTATGTGAA-TACCCTAATATCTCTGGGCAATTTGATT---------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..............................................TTTAGATGTTCAAAAAAA...................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
...................................CACAATACATTCTTAAATGTACA.........................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.............................................TAGTAGATGTACAAAAAA....................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4784:17298070-17298149 +

28.81

TAAAAATAAAA-----AAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAAAATATATCAAGAAAAT-CTTTAGAAAAAGATTTA--GAAAAAATGTATTT--------AATTTATTTTAATTTATTTATTTCACTCT-------------------------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................................TTAGAATTTATTTATTTCA.................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATTTTAATTTGTTTATTTAA.................................................................	20	1	1.00	1.00	0.00	0.00	0.00
................................................................TTTGTTTTAATTTTTTTAT.....................................................................	19	8	0.13	0.13	0.00	0.00	0.00

258

scaffold_4929:10496857-10496929 -

26.75

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTAAAAAAAAA------------------GCAAATAAATAAAAGCAAAAATTTATTCATTGTGATTTATATGATTAGTATTG--AGGAAATTA------------------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..AAAAAAAAA------------------GAAAAAAAA.............................................................................................................	18	49	0.02	0.00	0.00	0.00	0.02
...............................AAATACATAAAGGCAAAA..................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
........................................AAAGCTAAAATTTATTAA.........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

174

scaffold_4690:5062096-5062179 -

26.21

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAG--AAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTCAATAGTCACGCTACTCAGTCGGCTAAATTGTGTTGCGCTAAAAGCTTCATTTCCAGGTTGCAAGAAAATATGAATGGACTG-----------------------------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
................................................................GAxAAAATATGAATGGAAT..................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4784:22168333-22168392 +

23.45

TAAAAATAA--AAAAATGCTCGATTGC-----TG--CAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGGAATTAATTAAAAATTCTCCCCTGAGTTCACGCATATTTAAGCAATACATACTTCCAG------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4690:5372587-5372645 +

19.31

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TCAAATATTAGAAA------------------AAAAAACAAAAA-------------------------------TACAATGTTGTTAAATTAACCAAACGTTAAATA---------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................AAAATGTTGTTAAAxTAACCA..................................................	20	1	1.00	1.00	0.00	0.00	0.00

scaffold_4690:14848228-14848275 +

18.74

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAAAATATTACATGGCACATTT-----TGAAGAAAAACGAATACCTATGGTT----------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

129

scaffold_4845:15378571-15378612 +

14.78

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AG---------------------------------ATACATATATA---------------------------------------------------------------------TAATATTTCTGCTGCAATGTTGCCAATA----

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

235

scaffold_4845:12782021-12782025 -

2.76

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAAA----------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

177

scaffold_4690:6568812-6568815 -

2.07

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AGAG-----------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

droFic1 - 64 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

190

scf7180000453829:52830-52979 -

51.39

TAAAAATAAAAAA---ATGCTCGATTG--CTGCAACTAAGAAA--CAAATATTT----TCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAATATGAAAAATGAATGCTGAATGGAACCTTAACAAAAAAAGCCCAATACCATAATAAAGTTAATAATA--AAAATAAATTAAATACGTTATAAAATGTTTAATGCAAAGAACGCTTGTTCCTTGGATTTATTAAT------AAAACTATTAATGT

Size

Hit Count

Total Norm

168

scf7180000453155:12831-12974 -

50.9

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAA--------------TTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATT-GTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAA-AGTAAAAAAAAACTTT-TTCCCTCGGCTTCAAAACTAAAATTTTTGGAT------TGCAAAAAGTTTCTTTAAACAAAAATAATAGGAACTGCAAAAGAATTTTTCAAAAATA--ATTTTTCT---------TCTATTTTTAATGATTTTTTGAAAAT

Size

Hit Count

Total Norm

163

scf7180000452523:11853-11998 -

50.65

TAAAAATAAAAAA-ATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTT---------------------ATCA-GCTGCAATGCCTCTATGAAGGG
AAAATCGGATAACTCTATCATATAGCTGCATAGGAGAGATCAAAATATATATATATAAA------------------------TAATGGAAAAAAATTATAATGTCGTTGTTTTTAATGCCACGAGCATGATTTTTGGAACATAAAGTTTTTTAAATACTCT-TAAAGTT

Size

Hit Count

Total Norm

227

scf7180000453932:179287-179435 -

49.27

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAA--------TATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTAT--------------------------------------CCTAGGCT-TATCAGCTGCAATGCCTCTATGAAGGG
TCAAAATCGGATAACCCTATCATACAGCTGCCATAGGAAAGATCAAAAAATATAT-------------------------------ATAGAAATA-------ATGGCAAAATAATCATAACGTTGTTGTTTTTTATTCCACGAGCATGATTTTTACAACATCGACTTTAT-------GAACTACCCTTGAACCG

Size

Hit Count

Total Norm

201

scf7180000453842:900841-900978 -

48.54

TAAAAATAAAAAAATGCTCGATTGCTGCA----------------ACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGC--CTCTATGAAGGG
TAAATTTGAACAA-AGTCGGATAACTCTATCATATAGCTGCCATAGGAGAGATCGAAA-------------------------AATATATATAGAATTAATGGAAATAAATTGATAGCATCATTGTTTTTTAT-CCCACGAGCATGATTTTTTGAGTATCAAGTT

Size

Hit Count

Total Norm

153

scf7180000448946:55-198 -

47.41

TAAAAATAAAAAAATGCTCG---ATTGCTGCAACTAA-GAAACAAATA--TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTT---------------------ATCA-GCTGCAATGCCTCTATGAAGGG
TCAAAATCGGATAACTCTATCATATAGCTGCCATAGGAGAGATCAAAATATATATATATAAATA--------------------------ATGGAAAAAAATTATAATGTCGTTGTTTTTAATGCCACGAGCATGATTTTTGGAACATAAAGTTTTTAAATACCTTTAAG-----

Size

Hit Count

Total Norm

140

scf7180000454107:1538042-1538178 +

47.24

TAAAAATAAAAAAATGCTCG-------------ATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAAT-GCCTCTATGAAGGG
TAAATTTGAACAAAATC-GGATAACTCTATCATATAGCTGCCA-TAGGAGAGA------------------TCGAA---AAATATATATAGAATTAATGGAAATAAATTGATAGCATCGTTGTTTTCTAT-CCCACGAGCTTGATTTTTGAACATCAAGTT

Size

Hit Count

Total Norm

224

scf7180000453930:275127-275265 -

46.67

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTG------CAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTC--TATGAAGGG
TAAAATTTTAACAAAATCGGATAACTATATCATA--------------TAGCTGC-CATAGGAAGGATAAAAAAATATATATAGAATTAATCGAAATTAATTGATAACTTCGTTGTTT-TTAATCCCACGAGCATGATTTTTAAAACATGGACTT

Size

Hit Count

Total Norm

scf7180000452506:1344-1480 +

46.62

TAAAAATAAAAAAATGC------------TCGATTGCTGCAACTAAGAAAC------AAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATG-CCTCTATGAAGGG
TAAATTTGAACAAAATCGGATAACTCTATCATATAGCTGCCAT-AGGAGAGATCGAAAAATA--------------------------TAATATAGAT--TAATGGAATAAATTGACAGCATCGTTGTTTTTTATTCCCACAAGCATGATTTTTAAGTATTAAGTT

Size

Hit Count

Total Norm

164

scf7180000452637:25417-25571 -

46.48

TAAAAATAAAAAAATGCTCG---ATTGCTGCAACTAAGAAAC-----AAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTAT---------GAAATCAATTGAAAATATAATTG----------------------------TATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCAAAGTCAGATAACTCAATCATATAGCTGCCATAGGAAAGATCGAAAAATAT-------------------------------------ATATAGAAATAATGGGAAAAAATTATAACATCGTTGTTTTTAAACCCACGATCATAATTTTCAAAATATTAGTTTTATAATAACCCTTGAATCAAGAAAAAA

Size

Hit Count

Total Norm

211

scf7180000453910:509555-509705 -

45.93

TAAAAATAAAAAAATGCT---CGATTGCTGCAACTAAGAAA-CAA--ATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCC-------------------TAGGCTTATCA----GCTGCAATGCCTCTATGAAGGG
TCAAAATCGGATAACTCTATCATATAGCTGCCATAGGGGAGATCAAAAAATATATATATAAATAATGGAAAAAAAATTA-------------------------TAATGTCGTTGTTTTTAATGCCACGAGCATGATTTTTGGAACATCAAGTTATTGAAATACTCTTAAATCGAG

Size

Hit Count

Total Norm

scf7180000454059:55925-56081 +

45.36

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAA----ATA--------------TTTTCAGTTG-----TTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGA---AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAATATAAAA-----CTTGATGGAAGTTCTTCAATAATAATTTAATATAATAATTTTCGCATTTTGAGCTTTTTGTTTCATCAAAGATTCATTTATATCA-----------ACCAATTATAAAAATTATTTTTCCAACCTCGGCATTAAAATCTTATTGTCCAACCAAAGGG

Size

Hit Count

Total Norm

237

scf7180000454039:887834-887975 -

44.23

TAAAAA------TAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTA--TCAGCTGCAATGCCTCTATGAAGGG
TAAACACCTTTATGGAACGGCACTCCAATGATCATA-TACCAAATTAAGCTTGAAATTTTT---TTG-CAATGCCTTTTTTTGCGTAATTATAGAGGCCATTAAACGCGT--------CCAACATTTATTTCAGTCGAGGGTTTTCTGTGCCGAT

Size

Hit Count

Total Norm

scf7180000454040:99982-100117 +

43.33

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGA----AACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCA---------GCTGCAATGCC--TCTATGAAGGG
TCAAAATCAGATAACTCTATCATATAGTTCCTATAGGAGAGATCAAT-------------------------ATATATATATACAGGTATATAAATAATGGAAAA-AAAATTATAACGTCGTTTTTTTAATCCCACGAGCAGGATTTTTGGAACATCAAGTT

Size

Hit Count

Total Norm

188

scf7180000453824:787906-788054 -

43.25

TAAAAATAAAAAAATGCTCGATTGCTGCAACT------------AA--GAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT--TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTA------------GGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAATTTGAACAAAA-TCGGATAACTCTATCATATAGCTGCCATAGGAGAGAT--------------------CGAAAA-----TTATATATAGAATTAATGGAAATAAATTGATAACATCGTTGTTTTTTATCCCACGAGCATGATTTTTGAATATCAAGTTTTTTAACAACGA

Size

Hit Count

Total Norm

158

scf7180000452150:13621-13766 -

42.39

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCC------------TAGGCTTATCAGCTGCAATGCCTCT-----ATGAAGGG
TCGAAATCGGATAACTCTATCATATAGCTGCCATAGGAGAGAT------------------CAAAAAAATATATATAGAATTAATGGAAATTAATTGATAACGTTATTGTTTTTCATCACACGACTATGATTTATCGAGTATCAAGTTTTTTAACTAGCATTGG

Size

Hit Count

Total Norm

207

scf7180000453876:29047-29202 -

42.09

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTA----------------------------TCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCAAAATCGGATAACTCTATCATATAGCTGCCATAGGAGAGAT-------------------CGAAAAATATATATAGAATTAATGGAAATAAATTGATAGCATCGTTGTTTTTTATCCCACGAGCATGATTTTTTGAGTATCAAGTTTTTTAACTAGCCTTGATTTATAAAAAA

Size

Hit Count

Total Norm

scf7180000452523:801593-801720 +

41.78

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAA------------ATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAACTGTTATTGAATTTCGGATTAAATTTGATCAAAATCGGATAACTCTATCATATAGCTGCCATAGGAGGGATCGAAAATTATATATAGAATTAATGGAAATAAATTGATAACATCGTTGTTTTTCA-------------------------------

Size

Hit Count

Total Norm

scf7180000453912:946565-946692 +

41.78

Size

Hit Count

Total Norm

298

scf7180000454097:138676-138803 -

41.78

Size

Hit Count

Total Norm

307

scf7180000454115:233796-233923 -

41.78

Size

Hit Count

Total Norm

droEug1 - 37 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

131

scf7180000409478:17863-18010 +

49.92

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTC-AGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATA-ATTGTATCCTA----GGCTTATCAGCTGCAAT-GCCTCTATGAAGGG
TAGCAAAATTAATATTTTAAAATTGTGTAAAAAAGTAACGGGTATCTTATAGT----CGTGGC--ACTCGACTATAGCGTTTCCTCTTGTTTTGATTAGAAATGTGCCTTGTATACCAAGGGGGCTTATCCGCCATAGCCGGATACCGCAACGG

Size

Hit Count

Total Norm

512

scf7180000409803:82719-82857 -

48.94

TAAAA-----ATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTA----TGTAC-ATTGCTATGAAATC--------AATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAATATGGGAGCGAAAAAATAAAAGATTTTTATATTTAAATTTTTAATATTCTAATTT---TATTTTAGTTAAATTTATTTTTATAAAATTTTTATTTAAATATCTAAGCTATTGGAAACAT----TTATTAAAAACTCATCGTCT-------------------

Size

Hit Count

Total Norm

523

scf7180000409821:5876-6022 -

48.43

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAA-TCAATTGAAAATATAATTGT-ATCCTAGGCTTATCAGC----------------TGCAATGCCTCTATGAAGGG
CTATAATCGAAGAAAACAAGTTCGGAGAAATA-----GATAATATTTCCAACAATGC-----------AACTATACACAGCGCTATGAAAGACAATTCAAATTATATT-GCAATCAC-CGAAAAACAGTTTAATTATTTCTCAAGACAAATCGAATTACAAAAGG

Size

Hit Count

Total Norm

152

scf7180000409533:478322-478460 +

47.62

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTT---------------------------------------GTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAATCTTAATAAATTTTAAATAAACCCAACTAATTAACTAAGAAAATCTTCTTTAATTTAAGATTTATTTAAAAATCTAAAAAAAACTAAGCTTCTTTGTAGATTATTTTAAGCACTTTTTTAGG-----------------------------------------------TATTTACAAAAGG

Size

Hit Count

Total Norm

208

scf7180000409708:78346-78489 +

46.84

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAA-CAAATATTTTCAGTTGTTCATT--GCAAATTAATTTATGT---ACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCAACAT---------TATTTTTGTGGCTGCTAAGAAAGTCGACATATACTTCTTCTTATTGCTCAAACTGCGTAGAGCCTGAAAATTTCAGGTCGGCAATTTTTGAAATAACTAAATTTTAGTGCATATATTTTAAACGATTTAGTTAATTT

Size

Hit Count

Total Norm

159

scf7180000409542:430769-430921 +

44.67

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCA--AATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATT-------GTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AGAAATAAACATATGGTTAAACTTAAGTTGCTAAACTTTAAATATTCCTCATCTTTAATTTTATCGAATAAAAATCTTACATTATGATGTCTTAAAAAAATAACATATTTTTTCGTAACATTCTTGGT---TTAGTTTTGGTCCCAGAGGAATGAC

Size

Hit Count

Total Norm

440

scf7180000409533:425331-425484 -

42.29

TAAAAATAAAAAA--ATG------------------------------------------------------------CTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTT-ATGTACATTGCTATGAAATCAATTGAAAATATAATTGTA-TCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCACCACAAGGTATGATGTTGCTGCAAAATAATACGAACCCAAATACCAAATACTAAATACCAAACACTAACTAAAAC--------------TAAAACAAAAACTAAAACCGATCGATCGATGCAACTGAAACTGATGCA------------------------------AGAAACCCAGTGCTAGCAAGGTGAAATA-------------

Size

Hit Count

Total Norm

292

scf7180000408994:279625-279789 -

42.16

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAAC--AAATATTTTCA------------GTTGTTCATTGCAAATTA--ATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCT----AGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTATGTTGGATGCGTGCTTTCCTGCCGCCGTTAAACATTTTTGCCATTTTTGAGCATGCAAAATGCCATCCGTCATGATAAACATCATATACACTTCATCGTCTGACTCGTGATCTATATATTTGTATTCTTTTCGATCTTAACTGCTTTGATTTTTCA--ATAGGG

Size

Hit Count

Total Norm

377

scf7180000409358:6940-7066 -

42.1

TAAAAATAAAAAAA-------TGCTCGAT-----------------TGCTGCAACTAAGAAACAA--ATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAGGAATCTAATCTAAAGAGAACATCCATTAAAACTTTATGCTGTGCGTCACCCATAAGTTGTTGATATTTTGTCTGTGGTTCATTTTCCATTATCTC---------------------ATTAAAAATGTAATCATCATTT-------------------------GGAAACA

Size

Hit Count

Total Norm

309

scf7180000409033:431612-431743 -

41.0

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCA------------AATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATC-AGCTGCAATGCCTCTATGAAGGG
CAAATTTAATCAAA--------------------------AAGAAGTTAAGTTTTTAATTGCATTTCTTATGCTAAATATGCTTGTTTATATATTAACTAAAAGCACTAAAAACTAAACTAAACTAAAG-CTGTTAAAAATGC-CAGCCAAAACGAAGGT

Size

Hit Count

Total Norm

416

scf7180000409471:1652600-1652693 -

39.43

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT------TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAAATTTAAAAAGG--GAGATTTCAGTAAATCGAATACTAATATATGAAACTGTTTATTGCAATCTAAACAGAAAATCTGTAGGT-TTTATGAAAT--------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000409235:8642-8776 +

38.2

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAAT-TTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATC--CTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
C----------------TATATTTTTCTAGGCTAGGAAAATACATTATAATCTGGGCATTAACAGCTGCTAGGACGGACGCGACGGTGAAACTAAATGACTACACGAACGCGGACTACATCCCCATAGAGGACGGTGACATTGTGTTGGG

Size

Hit Count

Total Norm

192

scf7180000409667:13675-13805 +

38.13

TAAAA------------------------ATAAAAAAATGCTCGATTGCTGCAACTAAGA----------------------AACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAGAAAACCTGATATCTCGGTATCTATAAATGAAAAAAAGTTCGGCTTAAGCATGTAGGTTTTCATAATGCTCCCAATGAGAAT----------------------------TGT----------------------------------TTTTTCCGATCAAGCCACGCCTACTCTAACGCCCACAAAATACG

Size

Hit Count

Total Norm

169

scf7180000409553:125215-125321 +

37.86

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GAAAGACCAAGAGGTTTTTTAT-------AAAAAGAGACAACAAAAGTAATATGAATATTTTATATTAATAAAATTACTATCCTAAAGTATCTAAAGT-ACTATAATCTTAATCT--------------------------------

Size

Hit Count

Total Norm

110

scf7180000409466:3201403-3201506 +

37.48

TAA---AAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TACCTTAAACAA-AAAGTATTTCATCTTT-CAATCCATGA-CAA--ACTTTCAGCCTTT--TCCCAAACTGCATCAA-TAATTTCCCATTAAATAAA-TGAAAGAAAAATTCG-------------------------------------

Size

Hit Count

Total Norm

139

scf7180000409510:9976-10081 +

37.24

TA-------AAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATA--------TTTTCAGTTGTTCATTGCAAA-----TTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CACTCGATCAAAATAAAACATTTCCAATTCAATTGACTTATAAAATAATTCTTGTTCTTTTTTTACTTGCTTATCTCAAAGTTCTTTAATGTGTTTACATCTGTAT-------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000408963:3941-4040 +

36.47

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTT--CATTGCAAATTAATT-------TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GAAAAGCTGATATGTGATAGAAAGTTGGGATTAAGCATGTAGTTCCTAATGATGACCCAAATGCGTATTGTTTTTACACTCTTGTAG-----CTCGAAGTCAGTT---------------------------------------------------

Size

Hit Count

Total Norm

151

scf7180000409533:477605-477705 +

34.16

TAAAAATAAAAAAATGC---------------------TCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGGCAAGAAGAGAAGGTCCTAAGCCCAATAGTTGGCCATCGAAAGCTGTGGCTGAGCTGCATTTGGTAGCAATTTGTG---------------------ATTACTAGGAATTTGATACAAAA----------------------------------------------

Size

Hit Count

Total Norm

519

scf7180000409804:1376999-1377090 -

32.01

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGC-AAT-GCCTCTATGAAGGG
---ATATCCAGGAATGTGTGTTTATTACT-----TAAACAAATTCCTTTGATTAC-CTTAGCAAATTGATTC-----CACTGTCA--------------------------------------------CCATTGTTCTCGACGCAGTT

Size

Hit Count

Total Norm

516

scf7180000409803:151669-151775 -

31.12

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGA--AGGG
TCTGTTTAAACATATATTTTAT-------------ACAGA---ACTGTTAATAGTTCTTTGAAATTCTGTTTCTTT-----------CAGTCCCTCGAAAGTACGC----GACGTATGCTTGCTC-----------TCTGCGAAGAGGT

Size

Hit Count

Total Norm

270

scf7180000408176:733842-733959 -

30.95

TAAAAATA------AAAAAATGCTCGAT----------TGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGAAAATCAGAGTTGGAAAACGCTCTAGGCAATTTCTGTTATGCGGCTGGAAAAAAAGTAACTCCGGACAGCAGCTGCAAA-------------ATTTCTATT----CGAACTGG----------------------------AGCAGAGCATATAAAAATAA

Size

Hit Count

Total Norm

droBia1 - 19 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000301754:1283245-1283392 -

49.61

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTT-----CAGTTGTTCATTGCAAATTAATTTAT--GTACATTGCTATGAAATCAATTGAAAATATAA--TTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTACAATATTTAAT--TTAGTTTTTTATATTTAAAATTCAAACTGTTTGCCCACAGTAGTATATTGAACAAAAATATTTCTGTC--T----CAAAATACTGTTAAAATTATTACTTGATATTCATAGAGTATGTAAAAAAATATTTTTATGACTAC

Size

Hit Count

Total Norm

scf7180000301673:6905-7044 +

46.39

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAAT-ATTTTCAGTTGTTCATTGCAAATTAATTTATG-------TACATTGCTATGAAATCAATTGAAA---ATATAATTGTAT-CCTAGGCTT--ATCAGCTGCAATGCCTCTATGAAGGG
TAGGAACGAA-----TTTCGAATTCAATAGT--------AT-TATCCTTCTTTTGATCAGTACCGGTGACTTTTTAAAATTTTT---GCACCATAAGTTTAAGTTAAAAAAAAACAATTTAATTCTTATTCTTAAACTGGTTACAATGTTTTTATGA----

Size

Hit Count

Total Norm

scf7180000299500:45869-46019 +

46.3

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAA------------ATTAAT-----TTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATC----CTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAATTTTATCAAAATCG-------GACGCCTAAGTCACAAAGCTGTCATGGGAACGATCGGAAAATTGGTGGGAAAATAATATGAAACATATGGATGTCTAAAAAATGGTCTGAAAAAAGAATGAAATAATTTTTTTTAATATCAGCAGCAATCCTT----------

Size

Hit Count

Total Norm

scf7180000302069:166357-166496 -

46.01

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATT-----------------------GAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GGACAATTTAAAAAAACTCA-TAGATGTAACAAA--------CCTTTG-----------------TTAAT--GTGTGTCCCGTTCTAAAAGCCACTGGAATTACAGAAAATTTGAACATGAAAATATTGTTAAATTTTGACCCTCTTTATTAGACCA--TTTAAACACAG

Size

Hit Count

Total Norm

scf7180000301756:19109-19262 +

45.24

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAA--TAT-AATTGTATCCTAGGCTTA--TCAGCTGCAATGCCTCTATG--AAGGG
GAACGATCGGAAAATTATTAGTTGAATAATATGAAAAAATTATATCTTCGGTATTTTTTAACATACAACCTTCTAAACTTGGAAATAACATTTTTTAATTAGTTCTGAATTTTGAATTAAATTTAATCAAAATCCGACGACTATATCATACAGC

Size

Hit Count

Total Norm

scf7180000300282:29701-29841 -

44.42

TAAAAA-----------------TAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATA--TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTA-----TCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CGTAGGAACGATTCGAAAATGGGTGGGAAAATGA--------------TATTAAACAAATATAGCTTCGGTATTTTTCGACATATTATCTTATA----------------ATATTGGGAATATGATTTTTTGTATTTTTAAGAATTTTGAATTCAATTTAATAAAAATCGG

Size

Hit Count

Total Norm

scf7180000302129:81478-81617 +

42.91

TAAAAATAAAAAAATGCT--CGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTC-----------------------ATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAAT--ATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CGACTATATCATATAGCTGTC-ATTTGAACAGTCGGAAAATTAATGTTTTTTAACATATAACCTCATACGCTTGGAAATAACATTTTTCATTTGGTTTTGAATTTTGATTTAAATTTTATCAAAATCGGACGACTGTATCA---------------------------------

Size

Hit Count

Total Norm

scf7180000302428:8001962-8002072 +

42.38

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACAT----------------------------------TGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATAAAATCAAG---------------TAAACCACAATCCATT--------------AGCATCAAACTATGCCAATATCTGCTGAGAAATTTAATATCTTTTGATTATAATGC--TTAAAGCCACAGAGCATATACTT---------------------------------------

Size

Hit Count

Total Norm

scf7180000297051:10784-10944 -

40.64

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCA---------------ATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCA--ATGCCTCTATGAAGGG
CAACGATCGGAAAATTATTAGTTGAATAATATGAAAAAATTATATCTTCGGTATTTTTTAACATACAACCTTCTAAACTGGGAAATAACATTTTTTAATTAGTTCTGAATTTCGAATTAAATTTTTATCAAAATCCGACGACTATATCATACAGCTAT---GAA

Size

Hit Count

Total Norm

scf7180000302422:4799302-4799485 +

38.34

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATA--------TTTTCAGTTGTTCATTGCAAATTAATTTATGTA--------------CAT-------------TGCTATGAAATCAATTGAAAATATAATT-GTATCCT-----AGGCTTATCAG--CTGCAATGCCTCTATGAAGGG
TAAACATTAAAAGATAAATAATTTTTA-AACTATTTAGCATCTTTCACTACATT----TTTGTTATGTTCAATTTAATTT-TGTCTAAAATTAAATATATATTTTAAAATATATGAGCTAATTACTTAAATAAAGATTTAATTTTTATCCGGCAAGCTGCTTGTCAAAATCTCATTGCCTTGCTAGAGGG

Size

Hit Count

Total Norm

scf7180000302075:5384822-5384941 +

35.23

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTC-ATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AATAAATAAAAC------------------------AGCAACAATTTTCAGTTTGTTTTAAACAGTGTAGCTTTAATAGGTT----GTCAATTATATGGAACTGAGATGAGATACGTGCGTGGTTAGTTTCTTTTTCAACTATCTGGG

Size

Hit Count

Total Norm

scf7180000302402:8471948-8471990 +

14.83

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
ATCAAATTT-----------ATAGCTGTGACAAAGGAA--------------------------------------------------------------------------------------AGCTGGAA-------ATGGAAGC

Size

Hit Count

Total Norm

scf7180000301454:28828-28861 +

12.41

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAGGGTATACAAACTTCGGCTTGCCGAAATCAA-----------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302041:138943-138968 -

11.72

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TACAACGAAAACATTCCATTATTGCT-------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302292:888918-888932 +

6.9

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AGAAAAGAATGAAAT------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000302255:139863-139867 +

3.45

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAA----------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000301454:33721-33725 +

3.45

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
----------------------------------------------------------------------------------------------------------------------------------------------AAGGG

Size

Hit Count

Total Norm

None

scf7180000301398:6960-6966 +

2.76

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCTGAAT--------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000298389:114659-114663 -

2.76

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAGAG----------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

droTak1 - 137 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

255

scf7180000415653:126845-126987 +

52.81

TAAAAATAAAAAAATGCTCGA------------------------------TTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAAT----CAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTTTTATAAAAATGTTTTCAACTTAAGAGAGCCTTTTTTATTTTTTATTTATCATTGAAACTGAGAGGGGAACATATT------------------------------TTTGAGGTGAAATTCAGTAATTGAATTTAGA-----GGCCTAAATA---TAACTAAAATACCTCTAGAAAGGG

Size

Hit Count

Total Norm

540

scf7180000415722:584181-584323 -

50.63

TAAAAATAAAAAAATGCTCGATTGCTG--------CAACTAAGAAACAAATAT-TTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAAGGAAATAATAAT--ATTACCGCTTTTGTTCAACTAATATTTAACTTTATTTCATTTTAACAGTTAAAATTTAACTATAACTAACGAT-TAATAATAACTAACTAAATAATCATACT----ACTCCCTAGTTACAGGGTATTTAT------

Size

Hit Count

Total Norm

428

scf7180000415198:31068-31205 -

49.16

TAAAAATAAAAAAATG--------CTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAATTATAGGAGAAAAAGAGCAACAAATTACGGAAAAT-----ACAAATTAATTTATATGTTCCTAATATAT---TTTATA----TAGGTAT---TTTATTTGAAATAATATTTAAATTGTTAG--TAAAAGGTGAAAGAATTATTCGACAAT

Size

Hit Count

Total Norm

scf7180000411424:8284-8411 +

48.28

TAAAAATA------------AAAAAATGCTCGATTGCTGCAACTAA--GAAACAAATATTTTCAGTTGT------TCATTGCAAATTAATTTATGTACATTGCTATGAAATCAAT-TGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CTGAGAAACATGCACAAACGAAAAAAA--------GCCGAAAATTAGGGCAACATTAATATTCGGTTTTTTCCATTCCATGCTTTTATATTTTTGTATTTTTAGTAAAATTCGATATTAAAATTTAATTATTCC-TT-------------------------------

Size

Hit Count

Total Norm

565

scf7180000415799:4824-4979 -

47.64

TAAAA---ATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTC---ATTGCAAATTAATTTATGTACATT-----G--CTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTTAGCCGAGTAACAAGTATTAGATAGTTGGGACACCAA--CCAGACTATTGCGTTCTCTCTTGTTTTAAATTAACTTCGACACAAATCATGGTTCTCT-AAAACAATTAAAAACAGCAC-AAATCAAAAGCATTTCTAGTGTAAGCCCTCTAAGCAATA

Size

Hit Count

Total Norm

230

scf7180000415397:158916-159075 +

46.45

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAAC--------AAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCT--ATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGC---AATGCCTCTATGAAGGG
TAAAAATAATTTAATATTTTATTTATGCAATTAATGGTTAATTCGGAAAATTGTTCGATTTATAATTTGACAACTTATCTTTGTTGATTATCAAATGTATTAAAGCCAATATTTATTTATATAATATTTTTTTGCAGGGCATATACAGTTCTTTTTAGTT

Size

Hit Count

Total Norm

214

scf7180000415386:128212-128367 +

46.18

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACA----------------------------AATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAATAATTAGGATAGGCTTGAACGTGGCACCAAAGAGAATATAAACAATGTTTATAAACAGTGTTTATAATATCTTTGGTGGCACCA-------------------TCTCGTAGGGAATTTTATTAAAAAATACTTATTTATTACTCTTATTCAAGGTTTTCTTAGTATTAGGGT

Size

Hit Count

Total Norm

337

scf7180000410557:11841-11976 -

45.63

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGCGGCCTGCAATATTATTAATAGCCAAATCTATTAAAATAGTATGCCC-TTTGCTTACCATAAATTTTC----ACACACTTACCAAATTTATA-----TTTAAATTTATTTAAATTGCTTACCTATT-AATTGCCTCTTAGAGGGA

Size

Hit Count

Total Norm

247

scf7180000415454:18572-18714 +

44.28

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGCAGGCAATTAAAGTGTCATTCTCTGTCGAAAAGTAAAAGTAATTGCCATCTGTT--TCGAATAACATTTTTGGCATGCCTCAAAACACTTGGTTGTGGATGTTAGTTCACGGTTCGCCCATTATTTGGCATTGCATTGCGAAT--

Size

Hit Count

Total Norm

316

scf7180000415875:32266-32390 +

44.14

TAAAAATAAAAA---AATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTA----ATTTATGTACATTGCTATGAA-----------ATCAA-TTGAAAATAT---AATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATTAAAACTAAATGT----------------GAGAACAAGTCTTTTGG-T--TTTGGTGTAAATCATAGGATTTTTGAATATTATA---AGTTGGTGATTTTTTT-ATTAAAAAATATTATAAT--------------------CGTAGTGCCAC-AGAAATCA

Size

Hit Count

Total Norm

569

scf7180000415809:171394-171503 -

44.14

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAA-TTTATGTACATTGCTATGAAATCA--ATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAAAAATAACTAATTACCCTTTCCTAACAATTATGAAATATAAATAATAAGTTACGCTTTAAAGATTTACAGTATGTAATTATCTAAAAAAAAAGGAGAGTAAATTTAAT----------------------------------------

Size

Hit Count

Total Norm

385

scf7180000414248:11267-11416 -

43.99

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAG----------------------AAACA---------AATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCA-----ATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TATATG--ATATAG-------TCGTCCGAATTTGAAAAAATTTTATTTGAAATTCAGAATTAGATAAAAATGACATTTTCAA---------------------AAGTAGGATGTTATAGGTTCAAAAACACCCAAGATATAATTT--TTTTACATTTTTTTC-CCGATTGTTCCTATGAGAGG

Size

Hit Count

Total Norm

212

scf7180000415385:32446-32610 +

43.69

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTG--CAAATTAATTTA-----TGTACATTGCTAT--GAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAG-----------------CTGCAATGCCTCTATGAAGGG
CAAAATTAAT-AATTGTAATATCCCAATATTAT--TAAAATATTTTTTTAAATGTTCTATTTGTAA--CACTTTTTAAATTGTATAT--CTAAAAAAAAAGAATAACAATTATAAGT-CATTTTAATTTTCTCAGCAAGCCGCTTACCAAAACCTCTTTGCCTTGTTAGAGAG

Size

Hit Count

Total Norm

scf7180000412396:26105-26243 +

43.52

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTT-ATCAGCTGCAATGCC--TCTATGAAGGG
AGACTTTACAGAAATCCCATTAAGCTGAATTTTACAGTCGAAATTTTCC-----------TTAAAATTGCTTCCGTTTTTTTTAATGCAAAAGACCGATCAGCAAACTATTTATTAGTTTTCAAATGTTGAGTTATCGACAAACTTTGGA

Size

Hit Count

Total Norm

315

scf7180000415868:433617-433780 +

43.41

TAAA------AATAAAAAAATGCTCGATTGC---------------------------------TGCAACTAAGAAACAAATATTTTCAGTTG--TTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TACGTCCCATCGCAAAGAATTGCTGAATTCGTTAGAACTGTTTAGTTATTTTATTATAATTCTTTAAAACTTAAAATAAGATATTTCTGGTACTCCCAATTGCAAA-----------GAATTGCTG---AATTTATTAGAAT----------TCTTTAATTTATTTATTATAATACCTATTTAAAGCC

Size

Hit Count

Total Norm

343

scf7180000411088:9510-9667 -

43.35

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTT-GTTCATTGCAAATTAATTTATGTACATTGC-----------TATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAG---CTGCAATGCCTCTATGAAGGG
TACAGTGCTAAAATTTCATTATT--AGCATCCAAGATATGTACATTTAAATTATCTTCAGTATAAATTTGTGAAAGTGTAACTCCTCTCCCCCTCTCCACAAGCTTTTCGAAATATAAACAAAT--GGGGTTCTCTAGTTCTTTCAATGTATTTAAATCATA

Size

Hit Count

Total Norm

126

scf7180000414478:20953-21089 +

43.17

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTA----TGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTTAAATTGT---------GGTTTTTAAATTATGGAAATTATTATT----ATTGTTATTTCTAGACCAATTTATTTTTAGTTTTAAGTAAGGCCTTTCTTAGGCACTTATCAGGGTCTTCGGATTGGTGGGT-CAACGCTTCTGAAAAAAT

Size

Hit Count

Total Norm

scf7180000410757:14316-14477 +

43.1

TAAAAATA---------AAAAAATGCTCGATTGCTGCAACTAAGAAACAAAT--ATTTTCAGTTGTTCATTGCAAATTAA------------------TTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCT-AGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAAAATGTGACCCAATAAAAGGTGTTCGGTTTGTAAAAGAACCGCCCATATAAGTGTTAAATTTTCCATAAGAGATAGGAGGAAATTCATTCCTGAGTTTATTTTAGTTTCTA---------------AAACAAACTTATCTAAACTATTATCATGTGCACACTTTATATAGTATG

Size

Hit Count

Total Norm

scf7180000410874:8924-9049 +

42.3

TAAAAATAAAAAAATGCTC-----GATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATT-GCAAATTAATTTATGTACATTGCTATGAAATCAA-TTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TATAAATATAAAAGCCCAGGAAAAAATTACTCAGCTTAAAGAGCAAGAACTGAAACTTATTCAGAAACAGAATGA------------GCTGGCAAGTCAAATTCAA--CAGCAACAGATCTTA-GCTCAGCAGCT-------------CAACGC

Size

Hit Count

Total Norm

386

scf7180000414319:18950-19076 -

41.71

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTT-----ATCAGCTGCAATGCCTCTATGAAGGG
CGAACATATCAAATTGATATTTTCT--AGAATATCAAGTTGATATTTTTAAATATCAATTCAATCTTAAGAAAGATTAATTTTTA------------AAATAACATTTGAATTTTGCGCTCTCGATATCAGATAAAAT-----------TTG

Size

Hit Count

Total Norm

234

scf7180000415398:167443-167615 +

41.68

TAAAAATAAAAAAA-TGC-----TCGATTGCTGCA----ACTAAGAAACAAATATTT-TCAGTTGTTCAT-TGCAAATTAATTTATG-TACATTGCTATGAAATCAATTGAAAA--TATAA--TTGTATCCT---------------AGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAATTATAAAAGTAATACCTCCTCCGATTTTTATATGGCACTAATATTTAATTATTTTTTTGTTGTTTTTAAGCATTTTCATAGACGGAACACGGAACTGGAATTAAATAAAATAATACAACACCATTTCCTACAAGCTTATGGACCGTGCTTACATGCCGCAATGCTTTTGT------

Size

Hit Count

Total Norm

droEle1 - 210 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

306

scf7180000490094:78887-79034 -

54.91

TAAAAATAAAAAAATGCTCGATTGC--TGCAACTAAGAAACAAATA-TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCT---TATCAGCTGCAATGCCTCTATGAAGGG
TAAAATCGAACAAATTATAGCTGCCATAGTAACTATCGAATAATTAATCTTCAAATCATCATAGCT--TCAATGTTTTTAAACATATACGCAAGTAAATCATAATATTAATGTTTTCAAGAATATTTAATTTTTGCAATAGCTG---CAAGGG

Size

Hit Count

Total Norm

143

scf7180000491010:40670-40814 +

53.85

TAAAAATAAAAA--AATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTG----AAAATATAATTGTATCCTAG---GCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAATTGGAAAACGATATCATATAGCTGCCATAGGAACTCAAATAGT-TGAG-------CTGAAAATCAGTCAATGCTTTTAAACATACAAGCAAGTAAATCATAATTTTAATGTTTTCAAGAATGTTTAATATTTGCAATAGCTGC---AAGGG

Size

Hit Count

Total Norm

311

scf7180000490214:117435-117576 -

51.92

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAAT--ATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAGTTTGTAAAAAAA---AATTTCTTTAATTAAGAAAAAGTCCAAATTTGATGCATTCAATACAGTTTAAAATTATCATGTTTCTGTAAATTA-AT---TAATTTTTTTGAATCCTAAAAAAAACAACTGACAAGCTGTCACAATCGA

Size

Hit Count

Total Norm

scf7180000487177:36729-36872 +

51.9

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATAT-----------------------TTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGC------------------------------AATGCCTCTATGAAGGG
AAAAAATAAATAA---------------------AAAATAATTATAACTTTCCTGTTTCTTAATTTTGTATAAGTTCTTCGAGACAAAGTAATTTTTAAATATTTT---AGAAT----------TA--------------------CGGTTATAATTTCATAATAATCGGACGACTATAACTTAAAGCTTTCATGCA--A

Size

Hit Count

Total Norm

214

scf7180000491238:483825-483978 +

51.52

TAAAAATAAAAAA--ATGCTCGATTGCTGCAACTAAGAAA----CAAATATT-----TTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGC---TGCAATGCCTCTATGAAGGG
TAAAATCGGAAAACGATATCATATAGCTGCCAT--AGAAACTAGCGAATAATTGAACTGCATATCATCATTGTT--TTAATGTTTTTAAACATATACGCAAGTAAATCATAATTTTAATGTTTTCAAGAATATTTAGTTTTTGCAATAGCTG---CAAGGG

Size

Hit Count

Total Norm

545

scf7180000491193:46359-46500 -

50.85

TAAAA----ATAAAAAAATGCTCGATT------------------------------------GCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAGATATCAACAAAAAAATTTACAAAAATCTGAGTTTAAAATATGAATAAAATTAACTCGAGATTTGGTAAAAAG-------------------------------------AAATAGATTGTTACGAAATAAGCTTTAAATTTAAAAGC------GGCTTATGAG--GGCTTGCCTTAATGAAAGT

Size

Hit Count

Total Norm

501

scf7180000491046:417309-417454 -

50.64

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTT----CATTGCAAATTAATTT----------------------------ATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AATGGATTCAAAACTGTTTCAGTAA-AAAACTATAAAAAAAATATCTATG-TTATTATTTGAATTCGAGTTGCTTTTGTATGGTTCAAATCGTTTAATTGTAAGAAGAATATTTATGTTAAATCGATTTTCAAT--TATTGTATTTTATA-----------------------------

Size

Hit Count

Total Norm

scf7180000490531:2679-2815 +

50.48

TAAAAATAAAAAAATGCTCGATTGCTGCAA--CTAAGAAACAAATATTTTCAGTTGTTCATTGC------AAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGGACATATAGTAATGGTTAAATATTTCAGAATTACGGTTTAAATTTCATCAAAA-----TCGGAGGACTATACTATATAGCTCCCATAGCAATAATATAAATATATAAAATAACTATCTAATA----AATGAGCTGCAAATCATC---------

Size

Hit Count

Total Norm

scf7180000489368:4478-4623 +

50.34

TAAAAATAAAAAAATGCTCGATTGCTGCAACT------AAGAA--ACAAAT---ATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATC----------------AATTGAAAATAT----AATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAA--------AATGTTTAATTCTTGCAATAGCTGCAAGGGTATATGAACTTGTTTTATAGTAATTTATAGTAATTTAGCATGCCTAAAGTATAATTAAACTACTTTTTAAGAGATAAAACCGAAAATATTGTAAAATGTAATCTATATTTAT------------------------

Size

Hit Count

Total Norm

528

scf7180000491104:431524-431663 -

50.21

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCC-------------------------------------------------------TAGGCTTATCA-GCTGCAATGCCTCTATGAAGGG
TAAATATAGCATACAGCTCC---------------------------------------------------------------CATGGGAACAATCGGAAAAATAAATGAAATAAAATGTATAACCCTTTTGTTTTTCCATTTTGTTTTTAGTTCTTAGATATATAGTGTTGGTTTATTATTCCGGAATTACGATTTCAAATT

Size

Hit Count

Total Norm

230

scf7180000491255:393801-393928 +

49.66

TAAAAA-----------------TAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTT---------CATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAACTTTTCTTATGGAACTTATAAAGTACTG----------TCCACTAGT---CAAAACATTTCATTAGCTTGGAACATGAAATTCAAATTAA----TTGACATTTTAAATAAACTAGTTGAAAATATATTTAGAGCTTAGCC----------------------------

Size

Hit Count

Total Norm

scf7180000490294:10519-10656 +

49.54

TAAAAATAA--AAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGA----AAATATAATTGTATCCTAGG---CTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAATCGGAAAACGATATCATATAGCTGCCATAGGAACTCAAATAATT-GAG-------CTGCAAATCAAATAATGCTTTTAAACATACAAGCAAGTTAATCATAATTTTAATGTTTTCAAGAATATTTAATATTTGCAATAGCT----------

Size

Hit Count

Total Norm

354

scf7180000490751:11523-11666 -

49.02

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGA---------AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TATTGTTATTATTATATTATCATGCTATGAC-----AACATATATTTATAGTTCTGT-CAGCAAGAATACAAAACATAATTACAATAAATTCAAATCATCAATTTAAAAGCACAGAT-TTTTTTTGTTTAATTACTTG---TGCTTATACG--TAT

Size

Hit Count

Total Norm

321

scf7180000490214:1472658-1472804 -

49.01

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTAT---CAGCTGCAATGCCTCTATGAAGGG
TCA---CAGACAGACACAAAAATACACCGATTTGTATATAAGGTACTTGAGTAGTGTGCCAAAGATTCGTTAATAAAAATTTCAACTAAAAGAATTAATAAGTTGTTTATCTATCTGCATCAAAAAAGTCTATAATGCACATTTAGAAGA

Size

Hit Count

Total Norm

410

scf7180000491006:1981973-1982119 -

49.01

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTG------TTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTG--AAAATATAATTG-----TATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAATAACCAAGAACT---------TACAATCAGAAAATGTATATTTTTTGCCATGATTTTACAGTTTTAAAAACTTAAGTTACATTT----GCAATGAATTTCAAAAACATCAGTGCTTAAAATTTTAATTTATTTATCATCCATATGTTTTTAAATGG

Size

Hit Count

Total Norm

292

scf7180000488370:52695-52845 -

48.32

TAAAAATAAAAAAAT-----GCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACAT-------TGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGAAGCTATGATGATTAGCGGCTCAATTATTTGAGTTATTTT--ATATATTTTTATTATTTCTATGGGAGCTATATGATATAGACGTCCGATTTTGATAAAAT----CTAAACCATAATTCTG--AAATATTTAACCATTGCTATATGTCGAAGAACTG

Size

Hit Count

Total Norm

103

scf7180000490980:29359-29514 +

47.56

TAAAAATAAAA---AAATGCTCGATTGCTGCAACTAAGAAA---CAAATATTTTCA--------GTTG------TTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATT------GAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCAAAATCGGACGACTATACTATATAGCTCCCAT--AGAAATAATAAATATATATAAAATAACTATCGAATAATTAAGCTGCAAATCATCATAGCTTCAATGTTTTTAAACGTATACGCAAGTAAATCATAATTTAATTCTTG---CAACAGCTGCA------------AGGG

Size

Hit Count

Total Norm

scf7180000489173:10753-10902 +

47.18

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGT---------------------------------------ATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAACAAACTCAAAATG---------------TAAAAAATAAATAAAATCCTTTTTTAAATGAAATACTAATTACTAAAATTT--AAAAAAATATTTGAA-AAATAAATGAGAAATGAGAAACATCTAACTATTGTCAACATTGGAGTGCTTCCTAGA------------------TTAATGAACTT

Size

Hit Count

Total Norm

334

scf7180000490491:5002-5149 -

47.08

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAAT--------------------ATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATT---------GAAAATATAATTGTATCCTAGGC-TTATC-AGCTGCAATGCCTCTATGAAGGG
TCAAAATCGGAA--CAATCGAAAAAAATAAATACAAAAAGAATTATAACTTTGCTGTTTTTTAAATTTTAGTTGTTCGACACATAGT----------------------ATTGGTTAAATATTTTGGAATTAC------GGTTTAAATTTCATCAAAATCGGACGACTATATCATATA

Size

Hit Count

Total Norm

348

scf7180000490635:26536-26676 -

46.73

TAAAAATAAAAAAATGCTCGATTGCTGC---AACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT---------------TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAATCGGACGACTAACATAAAGCTCCCATGAGAACAATACAAATATTTTAAAA---------AAAGTTTTTTTATTAACTTTTTTATTTTGTAATTTTTTTAGAAATTCATTTTGA---------------CTAATTAATAATTTGACAGTTTAGAGTAAAAA

Size

Hit Count

Total Norm

411

scf7180000491008:1993738-1993880 -

46.62

TAAAAATAAAAAA--ATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATA----------------ATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCAAAATTTCAAAAATTTCAAAATTTCTGTGAT--------AAG-TTTTTCAAATGTTTC------TTTATTTTGTGCGCAAT---TTGGAGCCAATGTGCGAGATTTGTCACTCTCCTTTACACTTTACCGTTATTTTTGCAGCTGCT----CTCTTTTAAGGA

Size

Hit Count

Total Norm

droRho1 - 135 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000767530:65055-65201 +

49.0

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT--------TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAGAAGCTGATTAAATTCTATTGAAGCACATACAGAGAAAATATTTCTTAAAATTCACTGTCCCTTAATAATCAACAAAATTTAGATTGATATGGTTAGATTTGT--------ATTTATATTAAAATAACATTCTTCAAGAGCACAATTAATGT

Size

Hit Count

Total Norm

113

scf7180000770536:590-724 +

48.6

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAG----------------------AAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAA----------ATATAATTGTATCCTAGGCTTATCAGCTG--CAATGCCTCTATGAAGGG
TGAAAGGTCAAAAATGC-AGAGTAATGCAAATATAATTTTTAATTGAATTGTTAAAGAAGCATAT--------------------------------------------AAATCAACTAACAATTATCACTGATTTAAATGGTTCCCA-GCTTGCCAACTTCCCATTGCCCAGTTAAAGAG

Size

Hit Count

Total Norm

227

scf7180000778257:57240-57376 +

48.57

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAA--------CAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAAT---CAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCA-ATGCCTCTATGA--------------------------AGGG
TGATAATAAAA----ACCCAATGATTATAATTAACAAAAGTAAAAACAAA-----------------------------------------AATAAAATATACAATTAAAAATGTTATTGTAA---AAATGCATAAGCTAAAGATGCCTGCATTATTGGGAATATTTATTTAAAATTTAATTGGA

Size

Hit Count

Total Norm

674

scf7180000779932:31744-31882 -

47.62

TAAAAATA---------------------AAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAA------GGG
TAACAGTATTTAAAATTAAGATTGAGCAAGAGAATTGTAACAGTATTACAGTAATCAAACAATTATT---------------------------------GTGCTATGAAACTGGTTCAGATTTTATTTGGATTTCATTTATATTAGGTTAGGAGTTT--ATGGATTTCCTGCA

Size

Hit Count

Total Norm

166

scf7180000776931:23617-23756 +

47.61

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTG--CAAATTAATTTATGTACATTGCTATGAAATCAATTG-AAAATATAATTGTATCCTAGGCTTATC--AGCTGCAATGCCTCTATGAAGGG
AAA-------AAAGTAATTATTTACTATATCAAAATT----ACGCTTTTAGTTTTTTAATAACCGGACAAAATCATATA-GCTGCCATAGAAACGATTTCAAAATGT-ACTATAGCTTAAAATCGACATAGCTTCATTGTTTTTAATAATAG

Size

Hit Count

Total Norm

scf7180000766869:5107-5247 +

47.11

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATC-----------------AATTGAAAATATAATT----------GTATCCTAGGCTTATC---AGCTGCAATGCCTCTATGAAGGG
TAAGAATTAAACATTATTCAA-------------------AATGTATTCACC--TTTAATGTG-ATTAAAATATAATCATTGTTGTTAAATCGTAAACATCTATGGCACAATCGAAATTAATATTTAAATAAATAGTA----ATGCAAAACGAAATATGCAATGCCT----------

Size

Hit Count

Total Norm

scf7180000766869:8311-8451 +

47.11

Size

Hit Count

Total Norm

260

scf7180000779317:5785-5923 +

46.3

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAA----------------------------------TTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCT-TATCAGCTGCAATGCCTCTATGAAGGG
CAATACCGAACTATATCCCAAGAACT---------------------------ATGCAAATCAAATCAAGTTAGCCAAGTTGGAGGTCTGAGTCAAACAATGGCGTATGTGTGTATGTATGTAAGCATAT--ACATATGTTTGTATTTACATTGTACACAGTTGCAAT--------------

Size

Hit Count

Total Norm

347

scf7180000779985:597689-597840 +

46.2

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTG--T----TCATTGCAAATTAATTTA---TGTACATTGCTATGAAATC-AATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAGAAAGAAAT-AAAAGCAAACACTGTGTTTAAAAAAATATTTCTTTTAAAAATATACATAAATAGAGAAGTAATTCAGTAAGTGAACTGTT---TATAAAAATT-AGAAAGTTTATAAGTTATAAATTAATAGAATGCAAAGAATGCATTACAAT

Size

Hit Count

Total Norm

333

scf7180000779914:676637-676769 +

45.81

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGC--TGCAATGCCT------CTATGAAGGG
A-----------AACACTTAATACCGGCAACA---------ATCTGTTCGGATATTAATTGAA-ATTGGCGAATATAAATTCCTTAGATATTA--TAAAAATTCCATTTAAACTTAAAACTATTATCCATGTAATGCTTAGTTATTTATTGTTGG

Size

Hit Count

Total Norm

416

scf7180000762346:3614-3739 -

45.21

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAATACTCATAAAAATCCCAACTTCCTAACTTTAAAAACACCAAAGTTA----TGTCATTTCCAATCA-------TTCAGTTATATGGAAGCTATAGGATATA----GTCGGCCGATCCTTATGAAATTTAAT------AGGTCGGA

Size

Hit Count

Total Norm

554

scf7180000777453:5322-5465 -

45.14

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAA---------------------------------------ACAAATATTTTCAGTTGTTCATTGCAAATTAA----TTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAAATTTGTATTGTTTTACTTTTAAAATTGGGTATGGCTATACCATATTTTATGATGCATACAATACAATGATACAATATTTCGTTTCAGTCTACTAGAAACGAATATATAAACCTATATTTGCTTGAAATTGCTTGTGAA----------------------------------------------

Size

Hit Count

Total Norm

473

scf7180000770031:21666-21805 -

44.66

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAA-------------------------------------AATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GA------------------------------------------TTGTCAGAC--CAACTACATATTTAGCAATATACATAATAATAAGATAAAGTCATATAATTAAAATACGATTGAATTCTTTTGTTTGAAAAAATTACACTAGAATTAAAACCTAATTCCCTTTATTCTCTCCTTAAAGAA

Size

Hit Count

Total Norm

376

scf7180000780105:162932-163091 +

44.48

TAAAAATAAAAAA--------------ATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTAT-CCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TATTAATATGACATCTTAAAATGACTACTGTCCATGTATTTCTACTTATTTCTAAATTGTTACTTTTATTCATTAAAAATCAAAA-TTGTATTTTAATATGTTGTTAAACTATATTTCAGTTACTTATCTTATCTTATCTTT-TTTGCACTTTAACTAAACA

Size

Hit Count

Total Norm

173

scf7180000777059:21600-21764 +

44.2

TAAAAATAAAA-AAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGT-----------ATCCTAGGCTTATCAGC-TGCAA--------------TGCCTCTATGAAGGG
CTACCATAGAAACGATGGCCAAATGCAGCGCAAAATCGAC--ATAGC-TGCATTGTTTTTAGTAATGTAA-TAATATAAATCGAAATGTAGTCATTTTGTAATA--ACTGCAAGGGTATATAAACTTCGGCTTGCCGAAGTTTACTTCCTTTCTTGTTTTG---CAACTAAAAA

Size

Hit Count

Total Norm

696

scf7180000780067:172156-172319 -

43.94

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATA------------------TT---------------------TTCAGTTGTTCATTGCAAATTA----ATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATAA--------------------ACTACAAAACAAATTATAGTTTATTAACATCTATTTCCATATCTTAAGGGGGTTATTTAATTTATTTATTACCAAAAACTGAATATATTTATAATTCCTTAAACTGAA---ACAAATTAAAGGAAGTCTGAGCTTAACGACTGTGGAACTTTCTTGAA---

Size

Hit Count

Total Norm

711

scf7180000780104:189240-189375 -

43.93

TAAAAATAAAAAAATGCTCGATTGC-------TGCAACTAAGAAACA--AATATT------------------TTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGAAAGTACAA--GTGTTTAAATTTTATTATATGCATTTAAAGCACACAAATATTATATTTCAAGCAATTGTTTCC-ACTAATTGTGGCATATCCCTT----------------------TTTGAAAATGTATATGTA------------CAATTACGGCTAATTTA-AAAACG

Size

Hit Count

Total Norm

512

scf7180000775999:7401-7549 -

43.91

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTA----TGTACATTGCTATGAAATCAATTGAAAAT--ATAATTGTA--TCCTAGGCTTA-TCA----GCTG--CAATGCCTCTATGAAGGG
CTT----------CCTCGCACTCCCTATACCTGAGTAACGAGTAT---CTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTTTTAAAGTAGAAAGTAAATAAAAAATTGTAAACTTCAAGTTTAATTAAAAAACCATTAAATATTACTAATAAGAA

Size

Hit Count

Total Norm

524

scf7180000776931:20443-20570 -

43.82

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTG-----AAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TATATCC-AAATTATGCTTAGCTGCCATAGAAACGATTTCAAAATGTACTATAGCTTA----AAATCGACATAGCTTCATTGTTTTTAATAATAGAGGCAACAAAATGTAAACGTTTC------GTAATAACTGC-------------AAGG

Size

Hit Count

Total Norm

170

scf7180000776971:10478-10635 +

43.7

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATAT-----------------TTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAA---ATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAGAGTGATACTAATGTCCTATTCTGAGATGGAAAAGACTTATACATATGTGGGTCTGCGCATTATACTGGGGTAGTGCAAGTTAATTTAAGTTTATTTCTAACAGTTTTTTCCGTTTCGTTTTATGCATAACCCTGG--------CTGC-ATGCCGCTGTAATAAA

Size

Hit Count

Total Norm

319

scf7180000779685:7720-7884 +

42.62

TAAAAATAAAA-------AAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAA------TTTATGTACATTGCT--ATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCT-----ATGAAGGG
TATAAAAAGCACAGAACCGCATATTTGGCTCTTGAACATTAAATGCAAATATGTTTGTAGATAAAATGTAGATAAACACATGTTTACACATGTTTATGTGTAAAGATAATTGGAAA--TGATTATATACTAAAATGTTGATTTAAAATAATACTGACTAATAGCAGT

Size

Hit Count

Total Norm

droKik1 - 50 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

177

scf7180000302469:216489-216636 -

52.51

TAAAAAT---AAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGA--AATCAA--TTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAATAATTAAAAAATTATTAAAATAATTAAAACATT------ACTTATTATTTTATAAAATGTATTTAAATTTTTTTTCATCTTCGTATAAATTGTATTATTTAAATAAATTTAAATCTGATAAATGCCAACCTAAATATATATTTAAATGA

Size

Hit Count

Total Norm

110

scf7180000302696:738942-739077 +

49.5

TAAAAATAAAAAAATGCTCGAT----TGCTGCAA----------------------CTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTTATATAATAAAATACTCTACAGAATGTTGCTAGGAAAATGTTGCAGGAAAAATGTTGAGCAACATCTTTCAACACATGAATGTTGCTCATCAACTTTGTTGCATAA------------TTTATAAT-----------ATTTGTTTATAATCTTCCAT--------------

Size

Hit Count

Total Norm

206

scf7180000302592:1743692-1743844 -

48.6

TAAAAATAAAAAAATGCTCGATTGC----TGCA-A-------------------------CTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAACAATTAAAAACTCCCAGGGAAATCAGTCCAAATTAAGGTAAAAATGGTAATTTAAATCTTAAAAAGAAAGAAGTACCATTT---------------------TTCCTTTTTTTTAATTTAAGTTAAACAGTAAATGTGTTCTAAAATAGCCT--TAAGAAGCCTTTA-AATTAG

Size

Hit Count

Total Norm

157

scf7180000302380:11068-11217 -

47.44

TAAAAATAAAAAAATG---CTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAG--------------------------------------GCTTATCA------GCTGCAATGCCTCTATGAAGGG
TGAAAATCGGACGACTATATGATATTGCTGCCAT--AGGAACGA-----------------------------------------TCGGGAAATTAAT-AGAAATAAAATTATAGCTTCATTGTTTTTTAACGCATTTTTATTTACTCTAAGATATAAGCTTCTTAAATTATTCTACAATTTTGGTATAAATTT

Size

Hit Count

Total Norm

scf7180000302366:545374-545517 +

47.35

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCT----TATCAGCTGCAATGCCTCTATGAAGGG
TGAGGTCTCAACAAG---C-AGTTCCTCAACCAAAAAATGAACAATTGCTCTCGCACATTGCGCATACGTACGTATACGT---AATGTAATCACAAATACACAAAACTCCTACATAGGAAGAAGAAACAGGAGCAGCATCAACAAAAATCC

Size

Hit Count

Total Norm

scf7180000302610:1700083-1700192 +

44.2

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAAC-------------------AAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAAT--TGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCATAAAAATATTGTTCTATATTTTTCTGAAAAAAAAATCAACCTGAAATTAAGGACTA----------------------TAATTAAGTTATTCATTTTGTTATGAAATTAAAAATAAAAATATTTTTCTA------------------------------------

Size

Hit Count

Total Norm

161

scf7180000302388:1946474-1946610 -

44.01

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAA-----------------TTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCAAA-TAATTTCACACGAAAATTCAGCATATTAAAAAA--ATAAAGTCCAAA-GCCATTTCAATTTTAATCCCCTCATCAATAAATAAATATATAGTG-------AGCAACTA------ATAAATAACTCTATACTTATTAA----------ACAACAAATGA

Size

Hit Count

Total Norm

184

scf7180000302469:1580031-1580157 -

43.51

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAG-----GCTTATCAGCTGCAA-----TGCCTCTATGAAGGG
AAAAAAAAAAAAAATTTACCA---------------AATAAA-----------ATTCATTGTAGATTTTTAA----AAATTTATTAGGCATCAATTAATTATGTAATATTATTTTAAGGAACTTTTATGAGTTCGAAATAGAAGTTTCTACTAAAAA

Size

Hit Count

Total Norm

scf7180000302408:822023-822149 +

43.5

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCT-ATGAAGGG
TTTAAATAAAAAAGTTGA------CTTCGATTGAAAGTGTACTTTTTTGGGTTTATTGCTCCAAATAAAT---TGTATTTTTGTTTTAAAAGAAAAAAGTACACATTTGCATTT-AGC-----------CAATTGTTCTGGCCATGGG

Size

Hit Count

Total Norm

scf7180000302570:765292-765452 +

43.44

TAAAAATAAA-------AAAATGCT---CGATTGCTGCAACTAAGAAA--------CAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTA------GGCTTATCAGC--TGCAATGC-CTCTATGAAGGG-------------
TTAAAATAATACGTTTAAAAATTTTAAGCTTTTTCTGATACTAAGAAAGCGAGAAACA---ATTTTCAGTTATTT---TTAAATTTTCTACTGT--------------TCAATTTTTAATATA------TCCTGTAACAATTCTTCCAAACATCGTACTACCCCCTTTAAAGAGCATCCAGAAATCC

Size

Hit Count

Total Norm

163

scf7180000302389:115032-115192 -

43.42

TAAAAATAAAAAAATGCTCGA--TTGCTGCAAC--------------------TAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACAT-TGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GAAAATCGGACGACTATATGATATAGCTGCCATAGGAACGGTCGAGAAATAAATAGGAAAAA-AAA-TTATAGT--TTCGTTGTTTTTCAATGTATGTTTATCTACTCTGAGATAT---AAGCTTTTTTTATTATTCTAGAATTATGGTA--TAAATTTCATAAAAATCG

Size

Hit Count

Total Norm

108

scf7180000302686:293737-293859 +

43.36

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATAT--------------------TTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAAC--------------TTTTACGGCTGCTAGTAAATTTTTACCCAGTGCGAAATAAGGAAGACATCATTTATACATTTTTAT--ATTTTTAACCCGTTTTT----AAGTAGTTGAAGA-CTGGATTTAACCAGATCTTATC-----------------------

Size

Hit Count

Total Norm

100

scf7180000302641:2702-2861 +

43.15

TAAAAATAAAAAAATGCTCGAT--TGCTG---------CAACTAAGAAACAAATA---------TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTG-CTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAAATCGGACGACTATATGATATAGCTGACATAGGAACGATCGAGAAATAAATAGGAAAAAAAATTATAGT--TTCGTTGTTTTTCAACGTATGTTTATCTACTCTGAGATA----TAAGCTTTTTTATTATTCTAGAATTATGG--TATAAATTTCATAAAAATCG

Size

Hit Count

Total Norm

201

scf7180000302577:1497774-1497932 -

42.78

TAAAAATAAAAAA--ATGCTCGATTGCTGCAACTAAGA--AACAAATATTTTCAGTTGTTCATTGCAAAT--TAATTT----ATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCA--------GCTGCAATGCCTCTATGAAGGG
TAAAAATATATAAAAATATATAAAAATTTATAAAAATATATAAAAATATATAAAAATATATAAAACATATATAAAAATATATATAAAAATATTTAAAAAATATATAAAAA------ATATATAAAAAATATATCAAAAAATATATAACAAAATATATACAAAATA

Size

Hit Count

Total Norm

127

scf7180000302808:344148-344283 +

42.02

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATG-TACATTGCTATGAAATCAATTGAAAATATAATTGTAT------CCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAGGGTATACAAACTTCGGCGTGCTAACTTCGGGAAGCTAACTTCTTCCTTTCTTGTTTTCCTATTTATTTCTCGATCGTTCCTATGGCAGCTAT--ATGATGTAGTCGGCCGATTTTCATAAATT---------------TTTTAC-CAAAA

Size

Hit Count

Total Norm

147

scf7180000302234:119716-119882 -

41.13

TAAAAAT--------AAAAAAATGCTCGATTGCTGCAACTAAGAAACAAAT----------ATTTTCAGTTGTTCATTGCAAATTAATTTAT--------GTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAATAATGCCATAGGAAATAAATAATAAATAAATACAAGCAAAACAA--AGCCTTGAAAGTCTCTTTAAATGAGGTTCTCAGGCTCAGCCATAAGCAGCATTTGATTTTAATGAAATAAATTGAATAAACAATAATATTCCTTGCTTATTAAGGGT----CCATTCTGGTTAG

Size

Hit Count

Total Norm

scf7180000302592:760546-760717 +

39.4

TAAAAATAAAAAAATGCTCGATTGCTGCA----------------------------------ACTAAG---AAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATTTTATGAAAATCGGTCGACTATATGATATAGCTGCCATAGGAACGGTCGAGAAATAAATAGAAAAAAAATTATAGTTT-CGTTGTTTTTCTAACGTATGTTTATCTACTCTGAGATATAAGCTTT---------TTTGTTATTCTAGAATTATGGTATAAA--TTTTATAAAAATCG

Size

Hit Count

Total Norm

scf7180000301831:24910-25010 +

38.98

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGC-TATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CAAGGATATACTAACTTCGGCGTGCCG--------AAGTTAGTTTCCTTTCTTGTTTTACATTGATTTCTTGTCGTAAATTGCATAGAAAATCAGTCGACAGTATAATT---------------------------------------

Size

Hit Count

Total Norm

148

scf7180000302234:125005-125105 -

36.95

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAA----CAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGTATATATAAA-TTATTTGTATATTT------AAATATATTTAAATAAT----ATTAAATATTTAAACATATTTAAAGTACATTTAT----ATTTAAAAATATATATAATTATAT-----------------------------------

Size

Hit Count

Total Norm

150

scf7180000302313:539136-539244 -

35.05

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCA-ATTGAAAATAT-AATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TACAAAAATAAAAATATT--------------TAGATATAAGTAA---CTGTCTTACATTTGTATTTACTATATGTACA---------AATTATATTGAAA-TATATATTATATTTTATTTTCAATAA-------------ACCAAATA

Size

Hit Count

Total Norm

scf7180000299973:752-947 +

34.2

TAAAAATA----AAAAAATGCTCGATTG---------------------------CTGCAACTAAGAAACAAATATTTTCAGTTGT------------------TCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAAT---ATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATTTTATGAAAATCGGTCGACTATATCATATAGCTGCCATAGGAACGATCCGGAAATTAATAGAAAAAAATTACAACTTCTTTGTTTTATGAGATATGGTCATCTTGTATTAATTT--CTAATTTCGTATTTAATTTAATGAAAATCAAATGACTATATCCTATAGCTGCCATAGGAACTATC-TGAAAAAGTT

Size

Hit Count

Total Norm

droAna3 - 29 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

210

scaffold_13334:1096999-1097137 -

56.83

TAAAAATAAAAAAATGCTCGATTG--C---TGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAA----ATCAATTGAAAATATAA---TTGTATCCT--AGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAATATTTTTAAGTAATTAATTGGGCTACTGGCT-TTAAAAAATAATATTTTCAAATGTTATTGGTAATTTAATTTTTTTATAATTT--TTAAATACATTTTTTTAAACTAAAATCCTTGTTTTCTGCTTCCTTTTCAGCT-------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................AAAAATGTTTTCAAATGT.....................................................................................................	18	2	1.00	0.00	0.00	0.00	1.00
................................................................................TATAATTT--TTAACTACAG.............................................................	18	1	1.00	0.00	0.00	1.00	0.00
.................................................................................ATAATTT--GTAAATTCATTT...........................................................	19	1	1.00	0.00	0.00	1.00	0.00

160

scaffold_13117:3564664-3564810 -

48.35

TAAAAATAAAAAAATGCTCGATTGCT-----GCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAAAATAATAATATAAATAAATAAGTAGGGGGTAACTTGAAAATACAATTTAATAATGTTATTTACCCTTTATTTTTTTTATTTTATTTTGAAAAAAAAA---CATTAATTTATTTATT-AATTTAA-GAATTTAAGACCCATTTTATGCT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................................AATTTGATTTTGAAAAAAA.....................................................	19	1	1.00	0.00	0.00	0.00	1.00
................................................................................TGTTTTATTTTAAAAAAAAA....................................................	20	2	0.50	0.00	0.00	0.00	0.50
........................................................................ATTTTTTTTATTTTTTATT.............................................................	19	27	0.04	0.00	0.00	0.00	0.04
................................................................................TATTTTTTTTAGAAAAAAAAA---................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........TATAxAAATAAATAACTAG...........................................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
...................................................................................ATTATTTTGAAAAAAAGA---................................................	18	2	0.50	0.00	0.50	0.00	0.00
...................................................................................................................TTATT-AATTTGA-AAATTT.................	18	2	0.50	0.00	0.00	0.00	0.50

scaffold_13335:41684-41821 +

45.49

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATA--TTTTCAGTTGTTC-------------------ATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATC------------CTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAATTAAAA-------------TCTATAGCTAACAAACACAACTATTCTCAA--GATAAGACGACCGGGTATGGGTATTCCCA------------------------AAATAAAATGAATATTTTATC---CCCTAATTTTCTCTCTCTGCACAACTACAGCAACAACTATAACAACAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................................CCCA------------------------AAATAAAATGAAGAAT........................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................TTATAGCTAACTAACACAA.........................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..............................................................................................................ATAAACTGAATATTTTATC---CG..............................................	21	1	1.00	0.00	1.00	0.00	0.00

203

scaffold_13334:257712-257847 -

44.66

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAATATAAACAAAAACTCTATATCTTTTCTTTAAAAAAAATAATCAAAAAACTCTCA----AACTCTATTTTAAAGTCTTGCTCAGAAAACCCTTTAAACCGTCCCCCTCTACTGG-------AACCTCTACGCCCCTGGAAAACT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................AAAAAAAAATAAACAAAAA................................................................................................	19	43	0.02	0.00	0.02	0.00	0.00
....................AAATATTTTCTTTAAAAA.............................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50

175

scaffold_13117:4200431-4200546 -

44.07

TAAAAATAAAAAAATGCTCGATTGCTGCAA---CTAAGAAACAAATATTTTCAGTTGTTCATTGCAAA------TTAATTTATGTACATTGC--TATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAATATATAACATTAATCGTAGGCCATAAAATTTAATAAATAATAAGACATTATTTTTTATTACAGTTTTTTATTTATTTATTTT--TTGTTATACATTTCCACTTAAAGATTTAAT----------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................ATAATAAGCCATGATTTT....................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.............................................................TTAAAGTTTATTATTTATT..............................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..............TAATTGAAGGCCATAAAA..............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

102

scaffold_13340:10725471-10725593 +

43.45

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTC------------AGTTGTTCATTGCAAATTAA--TTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGAGAATCCAAAAACTTACTATCTTTGGACTTTGAATACAAATATCAATCTTAACTTCAAAAGCTGTCACTCTTAAATTTATATTTATAAATATTTACCAAAAATGCCTTTCAAGCAAAAATA--------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................................AATCTTATCTGCAAAAGC.................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_13099:1311606-1311772 +

43.16

TAAAAA-------TAAAAAAATGCTC--GATTGCTGCAACTAAGAAACAAATATTTTCAGTTGT---------------------TCATTGCAAATTAATTT-ATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGG-------CTTATCAGCTGCAATGCCTCTATGAAGGG CAAAATACCATAACATAGCTTTGTTCCTTTTTTCCCCAACTAACAAACTAATTCTCTCACTAACTTAGAAAGAGACCATTATTAATGATTGCAAAATTATTATGAGTCAATTTC-TTCAAGACAA------------TTCTGA-----CCTCAACAATAATGAAGCCCAGTTAATAGATGATGAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................................................................................................................C-TTCAAGACAA------------TTCTGA-----CCTCAACAA............................	26	1	1.00	0.00	0.00	0.00	1.00
............ACATAGCTTTGTTCCTTTTT.........................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TATTATTGATTGGAAAATT.......................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
................................................................................................................TC-TTCAAGACAA------------TTCTGA-----CCTCAAC..............................	25	1	1.00	0.00	0.00	0.00	1.00

215

scaffold_13334:1366455-1366622 -

41.39

TAAAA---------------ATAAAAAAATGCTCGATTGCTGCAACTAAGA-----AACAAATA-TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGT------ATCCTAGGCTTATCAGCTGCAATGC-CTCTATGAAGGG CAAAATTTTTTAATTAAAAAGCATAAAAATATTTTATAGTCAGACTGTAGATAAATCTTAAATAAATTATAGTTGTAGAGTAAATA-------TTTAATAATCTTTAGAATAAAATCGAAGCCACAAATATATAAAAATATTGACATTATTATTCCTAACACAATTTATATAAGG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.........................................................................................................................................................................ATATGG	19	2	2.00	0.50	0.50	1.00	0.00
........................................................................................................................................................................TATATGG	20	2	2.00	1.00	0.50	0.50	0.00
......................ATAAAAATATTTTAGAGTT......................................................................................................................................	19	14	0.07	0.07	0.00	0.00	0.00
CAAAATGTTTTAGTTAAA.............................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

159

scaffold_13117:3562764-3562881 -

41.38

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAAT----TGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG A---------------------------------GTAACGAATATTTCGAGGCGTGTTTTGTGCCAAGAATTTCAAACATTTTTAATAAATTAATTAAATCTTTAATAAGTTATAAATAATAAATATCTATAACTATTTTTTTTTTTTGGT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................TAGTTCGTGGCGTGTTT............................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................ATTAAGTTATAAAAAATAA............................	19	1	1.00	0.00	0.00	0.00	1.00
.....................................................................ATTTCTAAAATTTTTAATA...............................................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_12929:1258643-1258793 +

41.24

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACA-------AATATTTTCAGTTGT---TCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGT------------------------------------ATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTAAACTAACTGAATTTTGTCTTGTTATTCTCTTTAAAGTTTCTGTCCCTTCTTTGAATCTTTTCTTCTCTT------------------------------------AAATTTAACCTTTTTTTTGTAAAAAAAAAGTCCTTTTCATTATGAAAACTCTTATGTTTATTTTTTTTAACACCCTTAT------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................................................................................................................AATGTTTATTTTTTTTTA...............	18	9	0.11	0.00	0.00	0.00	0.11
......................................................................................................................TATTTTTTGAAAAAAAAAA........................................................	19	4	0.25	0.00	0.00	0.00	0.25
..........................................................................................................................................................AAGTCCTATGTTTATTTTT....................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_12929:2761638-2761753 +

40.0

TAAAAATAAA-AAAATGCTCGATTGCTGCAACTAAGA-AACAAATATTTTC----------------AGTTGTT-CATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAGATGTAATAAATATAATTAATTAGTACTAATCACGGAATCAACTTTTACACCACATTTCCCCGATAAATATTACATTAT-CTTTACTTTCGATATATTTCGATAATTTCGATTAA-------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................ATCTTTTACACCATATTT..........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
................................................................GCTAAATATTACTTTAT-C...................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................GAA-------------------------------------------------	19	14	0.07	0.00	0.00	0.00	0.07
TACATGAAATAAATATAAT...................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00

scaffold_13335:1452209-1452330 +

38.96

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTG--TTCATTGCAAATTAATT-------TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAAAAAAAGGAAAAACACACCACACGCCGCAAGCACCTCTACAAATGCAGTCGAGTACGCCATAAATTGAAGTGTAGGTTGGAAATATTGAAAAGAAATCTCACAAACA----CTTGC------------------------------AAAATAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................................AAATGCAGTCGAGGCCGCC..............................................................................................	19	1	4.00	0.00	3.00	1.00	0.00
...........................................AAATGCAGTCGAGGCCGC...............................................................................................	18	1	4.00	0.00	1.00	0.00	3.00
..............................................................................GTTGGAAAGAxTGAAAAGAA..........................................................	19	1	3.00	3.00	0.00	0.00	0.00
..............................................................................GATGGAAATAxTGAAAAGAA..........................................................	19	1	2.00	2.00	0.00	0.00	0.00
.AAAAAAAAGGAAAAAGAA.........................................................................................................................................	18	11	0.18	0.00	0.18	0.00	0.00
.AAAAAAAAGAAAAAAAACA........................................................................................................................................	19	32	0.06	0.00	0.00	0.00	0.06
AAAAAAAGAGGAAAAA............................................................................................................................................	16	32	0.03	0.00	0.00	0.03	0.00
..GAAAAAAAGAAAAACACA........................................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
AAAAAAAAAGGAAGAAAA..........................................................................................................................................	18	13	0.08	0.00	0.00	0.00	0.08
......................................................AGTACGCCATAAATTGTAA...................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TTGGAAAGAxTGAAAAGAA..........................................................	18	1	1.00	1.00	0.00	0.00	0.00
ATAAAAAAAGGAAAAAAAC.........................................................................................................................................	19	4	0.25	0.00	0.25	0.00	0.00
................................................................................TGGAAAGAxTGAAAAGAA..........................................................	17	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TTGGAAATAATGAAAAGAATT........................................................	21	1	1.00	1.00	0.00	0.00	0.00
.AAAAAAAAGGAAAATCACC........................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.AAAAAAAAGGAAACAAACA........................................................................................................................................	19	4	0.25	0.00	0.00	0.00	0.25
....AAAAGGGCAAAACACACCA.....................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..AAGAACAGGAAAAACACA........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
AAAAAAAAAGGAAAGAAACA........................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
....AAAAAGGAAGAACACACA......................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.AAAAAAAAGGACAAACAA.........................................................................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
................................................................AAATTGAAGTGTAGGTTGGAAATA....................................................................	24	1	1.00	1.00	0.00	0.00	0.00
AAAAAAAAAGGAAAAAAA..........................................................................................................................................	18	43	0.02	0.00	0.00	0.02	0.00
AAAAAAAGAxGAAAAACTCA........................................................................................................................................	19	2	0.50	0.00	0.00	0.00	0.50
.................................................................AATTGAAGTGTAGGTTGGAAATATT..................................................................	25	1	1.00	0.00	1.00	0.00	0.00
AAAAGAAAAGGAAAACCA..........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.....AAAAAGAAAAACCCACCA.....................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.AAAAAAAAGGAAAAAxACACGA.....................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
AAAAAATAAGGAAGAACAC.........................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................AAGAAATxTTACAAACA----CT........................................	18	1	1.00	0.00	0.00	1.00	0.00
..AAAAAAAGGxAGAACACACCA.....................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.AAAAAAAAAGAATAACACA........................................................................................................................................	19	3	0.33	0.00	0.00	0.00	0.33
......AAAGCAAAAAGACACCAC....................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
AAAAAAAAAGGAAAAAACC.........................................................................................................................................	19	3	0.33	0.00	0.00	0.00	0.33

169

scaffold_13117:4018989-4019107 -

35.8

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAA---------ATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TATAAAAATAAAATTATTTAGTAACTTCAAAAAGAGAAGAGAGA-------------------------------------ACTATATAACTATCTATAAGTAGTATCTGTACTTCTATATCTATACTATATCTACAATACTACCTATCCCAAACA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................CAAAAGGAGAAGAGAGA-------------------------------------G..........................................................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................AATACTAACTATCCCAAACC	20	1	1.00	0.00	0.00	0.00	1.00
...........................GAAAAAGAGAAAAGAGA-------------------------------------A..........................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................ACTACAAAAAAAGAAGAGA..................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
............................AAAAAGAGAAGAGAAA-------------------------------------AA.........................................................................	18	7	0.14	0.14	0.00	0.00	0.00
............................AAAGAxAGAAGAGAGA-------------------------------------ACAA.......................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..........................ACAAAAATAGAAGAGAGA-------------------------------------A..........................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_13047:1291770-1291892 +

33.71

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCT---------TATCAGCTGCAATGCCTCTATGAAG-GG CAAAAAATACTGAATTTTTTTTTATAATTTTTGT-------------TTTTTTGGGGGTTGGGGGCCAAATCGTGTTTTTTGTTTTTGAATT---------------------TCGAATTTTTGAAGAATTTTGTGTGTGGTTTTTTTTTGGAAAAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.........................................................................TGTTTATTGTGTTTGAAT..................................................................	18	1	11.00	0.00	1.00	9.00	1.00
..........................................................................GTTTATTGTGTTTGAATT---------------------T...........................................	19	1	3.00	0.00	1.00	0.00	2.00
..........................................................................GTTTTTTGTGTTTGAATG---------------------T...........................................	19	1	2.00	1.00	0.00	0.00	1.00
...............................TxT-------------TTTTTGGGGGGTTGGGT.............................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
............................TTTTTT-------------TTTTTTTGGGGT..................................................................................................	18	5	0.20	0.00	0.20	0.00	0.00
..................................................TTTGGGTGTTGGGGGGC..........................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................................................TGACTTTTTTTTGGAAAA.	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................................TTTTGTGGGTGGTGTT............	16	2	0.50	0.00	0.00	0.50	0.00
..........................................................................GTTTTTTGTGTTTGAATG---------------------............................................	18	1	1.00	0.00	0.00	1.00	0.00
....................................................TGGGGGATGGGGGCGAA........................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
..........................................................................GTTTATTGTTTTTGAATG---------------------T...........................................	19	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................................GATTTTGTGGGTGGTTTT............	18	1	1.00	0.00	0.00	0.00	1.00
.........................................................................TGTTTATTGTGTTTGA....................................................................	16	2	0.50	0.00	0.00	0.50	0.00
....................................................TGGGGGTTAGGGGCGAA........................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
...................................................TTGGGGTTTGGGGGCGAA........................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................................GTTGGGGGTTCGGGGCCA.........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................................TTGTGTGTGCTTTTTTTTTCG.....	21	1	1.00	0.00	1.00	0.00	0.00
...........................TTTTTTT-------------TTTTTTGGGGT...................................................................................................	18	5	0.20	0.00	0.20	0.00	0.00
................................................................................................................................ATTTTGTGGGTGGTGTT............	17	1	1.00	0.00	0.00	1.00	0.00
.........................................................................TGTTTATTGTGTTTGAATT---------------------T...........................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................TTTGTGTGTTGTTGTTTT.........	18	3	0.33	0.00	0.00	0.00	0.33
..........................................................................GTTTATTGTGTTTGAATT---------------------............................................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................GATTTTTTGAAGxATTTTGTGT....................	21	1	1.00	0.00	1.00	0.00	0.00

scaffold_13335:145654-145731 +

32.0

TAAAA-------ATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAATATATTTAAAAAAAAGTAATT-ATTCCTATGCTTGAAAAATAAATGTTTTAAGCTCTTAAATAGATATTATTTT---------------------------------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................................................................T---------------------------------------------------------------------------	19	4	0.50	0.00	0.00	0.00	0.50
..............................................................................A---------------------------------------------------------------------------	18	44	0.05	0.00	0.02	0.00	0.02
..............................................AAATGGTTTATGCTCTTA..........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..............................................................................A---------------------------------------------------------------------------	19	4	0.25	0.00	0.00	0.00	0.25
..........................................................................ATTTT---------------------------------------------------------------------------	19	3	0.33	0.33	0.00	0.00	0.00
..............................................AAATGTTTTACGCTTTTA..........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

112

scaffold_12916:1884544-1884731 -

30.08

TAAAAATAAAAA-----------------------------AATGCTCGATTGCTGCAACTAAGAA-ACAAAT----------------------------------------------------------------ATTTTCAGT-----TGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TACAAGGAAAGATTATGGTTTTAGGATCATAACATATTTTTAAAGCGC--------CATCTGGGGAGATGAATCTTTCAGATAGCAAAGTATTTCATTCTTAAGAGAGGAAAAAGTAACTAAAATAAATCCACAAGTAC--TAGGTAGTATAGGGCATCCCA---CAACCCATGTACCCCACTTTCAGGGCAACCCACAAG---------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................................AAGAAAGGAAAAAGGAAC...............................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...........................................................CTGGGGAAATxAATCTTTC........................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

177

scaffold_13117:4346068-4346176 -

30.07

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAG---AAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGA---------ATTGTTTTTGAATTATAATTAAGATGAAAGATATACATTTTTTTGTGTATTGTAA--TATTTAATGTACACTAA------------------------------CAACAAATAACAACAACACAAACACAAAAAACAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................................................................AAAACAGAAAAAACAA	19	11	0.09	0.00	0.00	0.00	0.09
.......................................................................................................................................AAACAGAAAAAAGAA	18	11	0.09	0.00	0.00	0.00	0.09
.......................................................................................................................................AAACAGAAAAAACAA	19	2	0.50	0.00	0.00	0.00	0.50
.....................................................................................................................AACATATAACAACACCACA..............	19	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................CAACAGAAACACAAAACAC..	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................................AACAACAGAAAAACAAAAAA...	20	1	1.00	0.00	0.00	0.00	1.00
.......................ATTATAATAAAGAAGAAAGATA.........................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................AACAAAAAAAACAA	18	17	0.06	0.00	0.00	0.00	0.06
................................................................................................................................ACAAAAAAAACACAAAAA....	18	13	0.08	0.00	0.00	0.00	0.08
...............................................................................................................................................AAAAAAA	20	9	0.11	0.00	0.00	0.00	0.11
.......................................................................................................................................AAACAAAAAAAAGAA	18	51	0.02	0.00	0.00	0.00	0.02
.................................................................................................................................CAACACAAACCCGAAAAA...	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................AAACAGAAAAAAAAA	18	38	0.03	0.00	0.00	0.00	0.03
.......................................................................................................................................AAACAAAACAAACAA	19	10	0.10	0.00	0.00	0.00	0.10
.................................................................................................................................GAACACAAACACAAAGAA...	18	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................................................AAA	19	43	0.02	0.00	0.02	0.00	0.00
.....................................................................................................................................ACAAAGACAAAAAACAA	19	3	0.33	0.00	0.00	0.00	0.33
.......................................................................................................................................AAAAACAAAAAGCAA	18	14	0.07	0.00	0.00	0.00	0.07
........................................................................................................................................AACACAGAAAAGAA	18	3	0.33	0.00	0.00	0.00	0.33

170

scaffold_13117:4025704-4025786 -

27.79

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AATAATATAAATAATTTGTTTTTATTTAAATTTAGTTACAAACTCAT-----------AAGCAAACTAA--------TTTTATCAGAAAAATAAATAAAAAT---------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................TAA--------TTCTATCAGAAAAAG.......................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........ATAATTTGTTTTTAGTTATA.....................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
............................................................................................AAAGAAAAAT---------------------------------------------	18	4	0.25	0.00	0.00	0.25	0.00
.................................................................GTAA--------TTTTATCAGTAAAA........................................................	18	1	1.00	0.00	0.00	0.00	1.00

131

scaffold_12929:1842460-1842519 -

24.83

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAA--ACATAGAATTCCTGGGCTATTGAATTTGAAAAACAAACATCATCAAGTAGTCCCTGC-------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..A--ACATAGAATTCCxGGGCT............................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

162

scaffold_13117:3569641-3569701 -

21.03

TAAAAATAAAA-----AAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAGATATACATTTTTTAAGCTTTTGATATCTGTATCTTT-----ATCAATTTTCTTTTGAT--------------------------------------------------------------------------------------CATAG

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13337:18622593-18622656 +

20.28

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAAA---------TTGTTTGA--------ATAAAAG---------TT-----------------------------------------------------TCATAATTATATACTG---TTGCCATGTGTTATTTG-CCGTTAATTG

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

droBip1 - 17 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000395356:37886-38031 -

53.48

TAAAAATAAA--------AAAATGCTCGATTGCTGCAACTAAGAAACAAATATT-TTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTA----------TCAGCTGCAATGCCTCTATGAAGGG
AAAGGGTACATAGGATTAAAAGCACTC----GTTTAGACCAAAGAATAAATGATAAATGGTGGTTTGTCTAAAACTTAA------------TTAAGGAAAAGTATGAAAAATAAAATATACCTTAGGTATACTTAGTATTCTCACTTGTAACCTCTTTTCGA----

Size

Hit Count

Total Norm

scf7180000396380:187441-187586 +

51.47

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAAC-------------------------AAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAA--------TTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAAAAATAAATAAATACA--------GTAACAAAGTGACTTTTCAGAGAGTCCTTTTTTTCTTTAAAGATTTAAGAATTTTCATTA------------------------TGAAAACTCATATGTATATGTATGTATAATTTTTTAGAACCCTTATCGT--AAAAATCATGCCTGCAGTT

Size

Hit Count

Total Norm

scf7180000392057:11466-11596 +

48.8

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTC-------------AGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATAT-AATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAAATTGAAAAAG-------TTGATTAATTTATAAAGAAAATGGTTTAATTTTCTGTTTTTTATGTTTCATTGAAAAGTATGTTTTTTAAAATGAC---AAATTATTTAGTTATATTAGTTAGTTATCAAACTTATAAAC--------------------

Size

Hit Count

Total Norm

scf7180000392940:5965-6106 -

45.29

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGC--AAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAAT-----------TGTATCCTAG--------------GCTTATCAGC-TGCAATGCCTCTATGAAGGG
TTAAAA--------------------GCAATTAAGAAAT----TTTT-------TTAAATGAAGAAATAGGTTTAAAAATAATTATATAAAAT--ATTTAAAATATTAAGAGCCTCCATAATTATCATAGTTTATCCAGATTACGTTTTTTATCTTTAAATGCGTATATTTCGTA

Size

Hit Count

Total Norm

scf7180000395895:950-1093 +

44.14

TAAAAATAAAA-AAATGCTCGAT-----TGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGG-------------------CTTATCAGCTGCAATGCCTCTATGAAGGG
TAATAACTGATAGAGCACACGCACGACACGCAACAAC-AAGAATC-AGCAAGCACAAACATGCACTGCACTCTATTTTTATAAAAAAAAAATAAAATAAATGGCGCACTAAATTAAAGCTCAAAACGAAAAATCAATACTTAACTT--------------------------

Size

Hit Count

Total Norm

scf7180000396544:302223-302338 +

42.35

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATAAATAAATGTATTTTGATGGTTTTTGAATAAATACTTTCTTTAATTTTCTGTTCTTAGCCACAATTTGTAAATAATTTTAAAAACTGGCGGAATAAGGAATGTTTCATA-------------------------------

Size

Hit Count

Total Norm

scf7180000395560:11602-11722 +

41.72

TAAAAATAAAAAAATG-CTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAATTTTAATATTGAATCGGTTAATACTGCCTAAAACCCAAAAT--AATATTATTCCTTGAC---TTGTATAAGTTATTTAATTTCAAAAAAATTATAACACAATTTATGT--TTGGAT--------------------TGAAAAG

Size

Hit Count

Total Norm

108

scf7180000396431:1156222-1156345 -

39.29

TAA---------AAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCT-ATGAAATCAATTGAAAATAT---AATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTATACACACAAAACTAAAAA--------------CTAAACAAAAAAAAAGTATATGTATTGTGTAAATAACAATTAAATTAGTTAAGCTTTAAATAAAAGAAATGGAAAGGAAGAGAAATAC----------------------AATTTATACGAATAC

Size

Hit Count

Total Norm

scf7180000393420:15943-16023 -

29.26

TAAAAATAAAAAA------ATGCTCGATTGCTGCAACTAAGAAACAAATATTTTC------AGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAATAATCAATAATTCTGTATATTCACTTGCCGTACCCGGA---CGTGTTTCTTCGATCCCATTTGTTAGTTTGCAATTATTTT---------------------------------------------------------------------------

Size

Hit Count

Total Norm

116

scf7180000396728:544620-544733 -

28.71

TAA-AAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAA--TATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGA---AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GTCTCAATGGAAGAA------------------------CAAGTTTATTACAAACCCATAATTAAAGGTTCATTCTT---GGTTCCGATAGTACCCATTCCAAGGCATATACCCACTTCTCAGGGTAACCCACAAGAACG-------------

Size

Hit Count

Total Norm

scf7180000396383:151490-151553 -

22.38

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
------------------------------------------------------------------------------ATATTGCTTAAATACATTTAAAACAGAGTTGCCAACTAAG-----TAATAGTAAAAACCAAATAAATAA

Size

Hit Count

Total Norm

scf7180000396712:348254-348312 +

22.35

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAA--ATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGAAGATAGAAAGCT-----------GGAATTTAGTACAGACTCTATTTTTGGTTAGTCGATCCAACCTA-------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000395498:29648-29695 +

20.94

TAAAAAT--AAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAGATTCTAATAAATAGTATAGTTTTTCAAG-AATAAACAATTTTTT----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000395987:3455-3491 +

14.58

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAAAAAATACAAAACATA-----TTTTTAACCAAAAAAAAAA---------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000392057:12699-12711 +

5.52

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
--------------------------------------------------------------------------------------------------------------------------------------CCACAATGGAAGC

Size

Hit Count

Total Norm

None

scf7180000396022:10941-10946 -

3.45

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TATAAA---------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000391374:13311-13311 +

0.69

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
------T--------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

dp4 - 48 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

232

chrXR_group6:8932576-8932713 +

51.39

TAAAAATAAAAAAATGCTCGATTGCTGC-----------AACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAAAATAAAAACATTTCATATTTAAATTACAAGGTTTTATATTTTAAATAAATATAT--------TTCCCACAAATTAAAGATAATATATTTATTTTAAAGTAATTTATAATTAAATTGAATATGGGCCCTA----CTACAAAGACTTT--------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

174

chrXL_group1e:5034865-5035011 +

50.87

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGT-TGT------TCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCT--------TATCAGCTGCAATGCCTCTATGAAGGG TACAAATAAAATAACAATTAAATAAATAAATTAAAAGAAAAAAAATTTCCATATTTTTAGATTAAATAAAAACTAAATAATTTAATTA---------------AAAAAAGCGATTTTAAATTAAATTGAAATATTTTGAGATTAAAGAAAATAAATAAAAAT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................................................................................................................ATTTTGGGATTAATGAAAA...........	19	1	3.00	3.00	0.00	0.00	0.00
....................................................................................................................................ATTTTGGGATTAATGAAA............	18	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................................ATTTTGTGATTAATGAAA............	18	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................................................................TAAAGAAATTAAAGAAAAAT	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TGTAAATTAAATTAAAAT..............................	18	1	1.00	0.00	1.00	0.00	0.00

575

chrXR_group8:7980765-7980911 -

49.63

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTT-GTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAAT-------------TGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CAAAAATAAATAAATAA-------------AAAATAAATAAATAGTTTAAATAAATTAATTAGTAATTGGTACTTGAACATGATCATTATTTAAATATTTAAATTTTCCCAAAAATATATTTTTTTATAGGGACTACCAGCCCAAATAATTGTTTAAA-AA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................................................ATATATTCTTTTAGAGGG.............................	18	1	1.00	0.00	1.00	0.00	0.00

243

chrXR_group8:1680332-1680480 +

48.06

TAAAAATAAAAAAATGCTCGAT-TGCTGCAACTAAGAAACAA-------ATATTTTCAGTTG-T---TCATTGCAAATTAATTTATGTACATTGCTA---TGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AACAACAACAAAAA--CACGACACGCACCAACAAAAAATCATATTGTAAATAATTTCGT-TGGCTTTTTTTTTTAAACAAACTCAAAACGAAAGCAAATGCAAAAGCAAAAGCAAAAACCATAAAA-----AGCCT-----AAGAAAAACTTGTATAAAGAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................................................ACGAAAGCAAAxGCAAAAGCA......................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................AAAAGCAAAAGCAAAAGC...........................................	18	6	0.17	0.00	0.17	0.00	0.00
.........................................................................................AAAAGCAAAAGCAAAAGC.......................................................	18	6	0.17	0.00	0.17	0.00	0.00
AACAACAAAAACAA--CACGA.............................................................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
.............................................GTAAATAATTTCGT-TGGCT.................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................AAGCAGAAGCAAAAGCAAAAG..................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................AACGCAAACGCAAAAGCAAAAGC.................................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................AAAAGCAAAAGCAAAAGC.................................................	18	6	0.17	0.00	0.17	0.00	0.00

285

chrXR_group8:7983141-7983280 +

47.32

TAAAAATAAAAAAATGCTCGATTG--------CTG---------------------------------CAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGA-AATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAAAAAAAA----TGCATGCCATTAAAAATATTTTAAATTACAAGTAAAATAACTAAAATATTAGATTAATAAA----------------------------------------GTATTACGTTATTGTAGTTAT------TTTTAATTGTAATTCAACATGTTTATTTGTTTTTTTTGCATTTATTT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................................................................................................................CATGTTTATTGGTTTTTA............	18	1	1.00	0.00	1.00	0.00	0.00

459

chrXL_group1a:7400122-7400270 -

47.13

TAAAAATAAAAAAATGCTCGATTGCTGCAACTA------AGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATG---------------AA---ATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TTAAGTTAAAATAATATATGTATGTTTTTGTTTTTTAAATTACACAAATAATGTTATTTATTTTTAGG-------------AACATTAAAATGTTGTATCGATGGATAAATTCACAAAACAAAAATTAAAATTTACCACGAATTTACCAGAT---------TTTTACCAGA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

290

chrXR_group3a:1106421-1106571 +

47.13

TAAAAATA--AAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGT-TCATTGCAAATTAATTTATGTACAT------TGCTATGAA------ATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAAT-GCCTCTATGAAGGG
CGAAAATTTAAGAGGTTAGCCGG----------CAATAAGCGAAT--TAGCTATCATTTAACTACAAGCTCATTCGCGAACAACTATTCTGCTTAATGATTTTCCCCATTTAAAAGTAAACTGCTGTACCTAATTTATCGCTAAAGCTAGGCTCTGTAAAACC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr2:6128918-6129079 +

46.63

TAAAAATAAAAAAATGCTCGAT---------------TGCTGCAACTAAGAAA-CAAATATTTTCAGTTGTTCATTGCAAATTA-ATTTATGTACATTGCTATGA--AATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAATATTAAAATGATATAATAAAATAAGAAACTTTAATGCAAATAATAATGATAACATTTACAACAATAAATAGAATAATAAAAATTTGGAAATAATTTTAAAATACCTATTAAAAAAAAAATTA----ATATATTACAAAAATGTAATACAAATATTAATGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................TAACATTTAGAAGAATAAAT...........................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
.......................................................TAACATTTAGAAGAATAAA............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00

311

Unknown_singleton_973:11363-11490 +

45.5

TAAAAATAAAAAAATGCTCGATTGCTG---------CAACT--AAGAAACAAAT---ATTTTCAGTTGTTCATTGCAAATTAA-------------TTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTAATATTTAAAAATGTTATTTTATTAGTTTTGGCAAAATTTTAAAAATAATATATGATTTTTAGAT---TTGTTTTAATTAATTTTGTTTTGAATTTTATGTTAAATTTGATGTAATTAAC--AAAATATAA-----------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..............................................................................ATTATTTGTGTTTTGAATT.............................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.........................................................ATTTTTAGGT---TTGTGTTA................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..............................................................................ATTATTTGTGTTTTGAAT..............................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................................................................TTTGTGTTTTGAATTTTA..........................................................................	18	2	0.50	0.00	0.00	0.50	0.00
...........AAATGTGATTTTATTAGG.................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

318

Unknown_singleton_1951:1945-2055 +

43.84

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACA---------------AATATTTTCAGTTGTTCA---TTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAATAAACTAATAGCCTTCAAAGCTGTAAATAGGGGTAATCCTTTAAGCCTTAGTAAATTTTTACTTCTTCAAAATTGCAG------------------------------------------------------TTTGATATCATTATTGACTATAAGACTGT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................GTAAATAGGGGTAATCCTTTAAGCCT.................................................................................................................	26	1	86.00	10.00	59.00	17.00	0.00
...............................TAGGGGTAATCCTTTAAGCCTTACCA............................................................................................................	26	1	64.00	21.00	9.00	34.00	0.00
................................AGGGGTAATCCTTTAAGCCT.................................................................................................................	20	1	54.00	2.00	11.00	41.00	0.00
......................AGCTGTAAATAGGGGTAATCCA.........................................................................................................................	22	1	53.00	53.00	0.00	0.00	0.00
................................AGGGGTAATCCTTTAAGCCTTACCA............................................................................................................	25	1	52.00	6.00	16.00	30.00	0.00
.............................AATAGGGGTAATCCTTTAAGCCTTACCA............................................................................................................	28	1	51.00	25.00	10.00	16.00	0.00
..........................GTAAATAGGGGTAATCCTTTAAGC...................................................................................................................	24	1	43.00	3.00	34.00	6.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTTAA.....................................................................................................................	26	1	42.00	28.00	3.00	11.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTTA......................................................................................................................	25	1	39.00	26.00	8.00	5.00	0.00
..........................GTAAATAGGGGTAATCCTTTAAGCC..................................................................................................................	25	1	39.00	2.00	34.00	3.00	0.00
......................AGCTGTAAATAGGGGTAATC...........................................................................................................................	20	1	36.00	21.00	3.00	12.00	0.00
....................AAAGCTGTAAATAGGGGTAATCCTTTA......................................................................................................................	27	1	36.00	33.00	3.00	0.00	0.00
.........................TGTAAATAGGGGTAATCCTTTAAGCCT.................................................................................................................	27	1	33.00	5.00	17.00	11.00	0.00
..............................ATAGGGGTAATCCTTTAAGCCTTACCA............................................................................................................	27	1	33.00	8.00	11.00	14.00	0.00
......................................AATCCTTTAAGCCTTACCA............................................................................................................	19	1	31.00	0.00	29.00	2.00	0.00
.......................GCTGTAAATAGGGGTAATCCTTTAAGC...................................................................................................................	27	1	30.00	5.00	16.00	9.00	0.00
.....................AAGCTGTAAATAGGGGTAATCCA.........................................................................................................................	23	1	28.00	27.00	1.00	0.00	0.00
......................AGCTGTAAATAGGGGTAATCC..........................................................................................................................	21	1	27.00	12.00	11.00	4.00	0.00
.......................GCTGTAAATAGGGGTAATCCTTTAAG....................................................................................................................	26	1	26.00	3.00	23.00	0.00	0.00
............................AAATAGGGGTAATCCTTTAAGCCTTACCA............................................................................................................	29	1	25.00	22.00	3.00	0.00	0.00
.......................GCTGTAAATAGGGGTAATCC..........................................................................................................................	20	1	24.00	3.00	17.00	4.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTTAAG....................................................................................................................	27	1	24.00	7.00	14.00	3.00	0.00
........................CTGTAAATAGGGGTAATCCTTTA......................................................................................................................	23	1	24.00	9.00	12.00	3.00	0.00
.......................GCTGTAAATAGGGGTAATC...........................................................................................................................	19	1	23.00	4.00	7.00	12.00	0.00
.........................TGTAAATAGGGGTAATCCTTTAAGC...................................................................................................................	25	1	23.00	2.00	17.00	3.00	1.00
.......................GCTGTAAATAGGGGTAATCCTTTA......................................................................................................................	24	1	22.00	7.00	14.00	1.00	0.00
...............................TAGGGGTAATCCTTTAAGCCT.................................................................................................................	21	1	21.00	3.00	0.00	18.00	0.00
.................................GGGGTAATCCTTTAAGCCTTACCA............................................................................................................	24	1	21.00	5.00	2.00	14.00	0.00
.................................GGGGTAATCCTTTAAGCCT.................................................................................................................	19	1	21.00	0.00	9.00	12.00	0.00
........................CTGTAAATAGGGGTAATCCTTTAAGC...................................................................................................................	26	1	20.00	3.00	12.00	5.00	0.00
.............................AATAGGGGTAATCCTTTAAGCCT.................................................................................................................	23	1	20.00	1.00	3.00	16.00	0.00
......................AGCTGTAAATAGGGGTAAT............................................................................................................................	19	1	19.00	3.00	2.00	14.00	0.00
............................AAATAGGGGTAATCCTTTAAGCCT.................................................................................................................	24	1	19.00	0.00	12.00	7.00	0.00
.......................GCTGTAAATAGGGGTAATCCTTTAA.....................................................................................................................	25	1	18.00	9.00	5.00	4.00	0.00
..............................ATAGGGGTAATCCTTTAAGCCT.................................................................................................................	22	1	18.00	3.00	6.00	9.00	0.00
..AATAAACTAATAGCCTTCCA...............................................................................................................................................	20	1	18.00	0.00	17.00	1.00	0.00
.......................GCTGTAAATAGGGGTAATCCA.........................................................................................................................	21	1	15.00	14.00	0.00	1.00	0.00
........................CTGTAAATAGGGGTAATCCTTTAAGCCT.................................................................................................................	28	1	14.00	8.00	1.00	4.00	1.00
..........................GTAAATAGGGGTAATCCTTTA......................................................................................................................	21	1	13.00	3.00	8.00	2.00	0.00
.........................TGTAAATAGGGGTAATCCTTTA......................................................................................................................	22	1	12.00	5.00	5.00	2.00	0.00
..............................ATAGGGGTAATCCTTTAAGC...................................................................................................................	20	1	12.00	1.00	3.00	8.00	0.00
.....................................TAATCCTTTAAGCCTTACCA............................................................................................................	20	1	12.00	4.00	5.00	2.00	1.00
....................AAAGCTGTAAATAGGGGTAATCCA.........................................................................................................................	24	1	11.00	10.00	1.00	0.00	0.00
.......................GCTGTAAATAGGGGTAATCCTTT.......................................................................................................................	23	1	11.00	7.00	4.00	0.00	0.00
...ATAAACTAATAGCCTTCCA...............................................................................................................................................	19	1	11.00	0.00	11.00	0.00	0.00
.....................AAGCTGTAAATAGGGGTAATCCTTTA......................................................................................................................	26	1	11.00	10.00	1.00	0.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTTAAGC...................................................................................................................	28	1	11.00	4.00	2.00	5.00	0.00
.....................AAGCTGTAAATAGGGGTAATCCTTTAA.....................................................................................................................	27	1	11.00	7.00	4.00	0.00	0.00
........................CTGTAAATAGGGGTAATCCA.........................................................................................................................	20	1	10.00	9.00	1.00	0.00	0.00
............................AAATAGGGGTAATCTTAT.......................................................................................................................	18	1	9.00	0.00	6.00	3.00	0.00
...ATAAACTAATAGCCTCCCA...............................................................................................................................................	19	1	9.00	0.00	9.00	0.00	0.00
.....................AAGCTGTAAATAGGGGTAATCCT.........................................................................................................................	23	1	9.00	8.00	0.00	0.00	1.00
.....................AAGCTGTAAATAGGGGTAATCC..........................................................................................................................	22	1	9.00	6.00	3.00	0.00	0.00
TAAATAAACTAATAGCCTTCCA...............................................................................................................................................	22	1	9.00	0.00	6.00	3.00	0.00
......................AGCTGTAAATAGGGGTAATCCT.........................................................................................................................	22	1	9.00	5.00	2.00	2.00	0.00
........................CTGTAAATAGGGGTAATC...........................................................................................................................	18	1	8.00	1.00	0.00	7.00	0.00
......................AGCTGTAAATAGGGGTAATCCTT........................................................................................................................	23	1	8.00	7.00	0.00	1.00	0.00
.........................TGTAAATAGGGGTAATCCTTTAAGCC..................................................................................................................	26	1	8.00	0.00	4.00	3.00	1.00
.....................AAGCTGTAAATAGGGGTAATCCTTT.......................................................................................................................	25	1	8.00	8.00	0.00	0.00	0.00
.......................GCTGTAAATAGGGGTAATCCT.........................................................................................................................	21	1	8.00	6.00	2.00	0.00	0.00
..............GCCTTCAAAGCTGTAAATAGGG.................................................................................................................................	22	1	8.00	0.00	8.00	0.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTT.......................................................................................................................	24	1	8.00	8.00	0.00	0.00	0.00
.....................AAGCTGTAAATAGGGGTAATC...........................................................................................................................	21	1	7.00	5.00	0.00	2.00	0.00
....................AAAGCTGTAAATAGGGGTAATCC..........................................................................................................................	23	1	7.00	6.00	1.00	0.00	0.00
...............................TAGGGGTAATCCTTTAAGCC..................................................................................................................	20	1	7.00	0.00	1.00	6.00	0.00
..........................GTAAATAGGGGTAATCCTTTAAG....................................................................................................................	23	1	6.00	1.00	5.00	0.00	0.00
.....................TAGCTGTAAATAGGGGTAATC...........................................................................................................................	21	1	6.00	6.00	0.00	0.00	0.00
....................................GTAATCCTTTAAGCCTTACCA............................................................................................................	21	1	6.00	1.00	3.00	1.00	1.00
...........................TAAATAGGGGTAATCCTTTAAGCCT.................................................................................................................	25	1	6.00	2.00	2.00	2.00	0.00
........................CTGTAAATAGGGGTAATCCT.........................................................................................................................	20	1	6.00	1.00	3.00	2.00	0.00
.......................GCTGTAAATAGGGGTAAT............................................................................................................................	18	1	6.00	0.00	1.00	5.00	0.00
.....................AAGCTGTAAATAGGGGTAATCCTT........................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
.....................TAGCTGTAAATAGGGGTAATCCA.........................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..AATAAACTAATAGCCTTCCCA..............................................................................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
....................ATAGCTGTAAATAGGGGTAATCCTTTA......................................................................................................................	27	1	5.00	5.00	0.00	0.00	0.00
....................AAAGCTGTAAATAGGGGTAATCCTT........................................................................................................................	25	1	5.00	4.00	1.00	0.00	0.00
.......................GCTGTAAATAGGGGTAATCCTTTAAGCC..................................................................................................................	28	1	5.00	3.00	1.00	1.00	0.00
.......................GCTGTAAATAGGGGTAATCCTT........................................................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTTAAA....................................................................................................................	27	1	5.00	4.00	1.00	0.00	0.00
........................CTGTAAATAGGGGTAATCCTTTAAG....................................................................................................................	25	1	5.00	3.00	1.00	1.00	0.00
...............................TAGGGGTAATCCTTTAAGC...................................................................................................................	19	1	4.00	0.00	0.00	4.00	0.00
.....................AAGCTGTAAATAGGGGTA..............................................................................................................................	18	1	4.00	3.00	0.00	1.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTTAAGA...................................................................................................................	28	1	4.00	4.00	0.00	0.00	0.00
.................TTCAAAGCTGTAAATAGGGGT...............................................................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
........................CTGTAAATAGGGGTAATCCTTTAAGA...................................................................................................................	26	1	4.00	2.00	0.00	2.00	0.00
............................AAATAGGGGTAATCCTTTA......................................................................................................................	19	1	4.00	1.00	0.00	3.00	0.00
......................AGCTGTAAATAGGGGTAATCCTTA.......................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
....................AAAGCTGTAAATAGGGGTAATC...........................................................................................................................	22	1	4.00	3.00	0.00	1.00	0.00
....................AAAGCTGTAAATAGGGGTA..............................................................................................................................	19	1	4.00	4.00	0.00	0.00	0.00
.......................................ATCCTTTAAGCCTTACCA............................................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
............................AAATAGGGGTAATCCTTTAAGC...................................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................GCTGTAAATAGGGGTAATCCTTTAAGCCT.................................................................................................................	29	1	3.00	1.00	1.00	0.00	1.00
................................AGGGGCAATCCTTTAAGCCT.................................................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
..............GCCTTCAAAGCTGTAAATAGGGGTA..............................................................................................................................	25	1	3.00	1.00	2.00	0.00	0.00
........................CTGTAAATAGGGGTAATCCTTT.......................................................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
......................AGCTGTAAATAGGGGTAA.............................................................................................................................	18	1	3.00	0.00	1.00	2.00	0.00
..............................................................................................................................................ATCATTATTGACTATAAGACT..	21	1	3.00	0.00	3.00	0.00	0.00
.............................AATAGGGGTAATCTTATA......................................................................................................................	18	1	3.00	0.00	2.00	1.00	0.00
....................AAAGCTGTAAATAGGGGTAATCCT.........................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
.............................AATAGGGGTAATCCTTTAAGC...................................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
........................CTGTAAATAGGGGTAATCCTTTAA.....................................................................................................................	24	1	3.00	2.00	0.00	1.00	0.00

576

chrXR_group8:7980989-7981127 -

43.68

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTA---------ATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG----------
AAGAATTAA------AATAAATAAATACAAAA--------------TAAAATAAATAAATAAGAAATAAAATACCAAAATTAAATAAATAAATAAGAATTAAAATAA----ATAAATAAAAAATA---AAATAAAATAAAATAAATGAATAAAAAATTAGTAAATA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

199

chrXL_group3a:1791139-1791296 +

43.62

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTA---TCCTAGGCTTATCAGCTGCAATGCCTCTATGA-------------AGGG A-AATACATGAGATTGCTCCCATT--TCACCAATAGAGCCCATATTTTATTGATTTTGTTTCGTTTCGTTTCG-TTAAATCGATTCCATACAAGCTCCAAATATATACGCACGATTCTGTTGTTTTCAGCTTCAGTGA-TCTAGGAGAGGTGGTGGGCATGGG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........................................ATTTTTTGTTGATTTTGT........................................................................................................	18	4	0.25	0.25	0.00	0.00	0.00
......................................................TTTGTTTTGTTTTGTTTCG-TT.......................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................TGTTGCTTTTGTTTCGTTTCG...............................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................TTTTGTTTTGTTTTGTTTCG-T........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................................GTTGCTTTTGTTTCGTTTCGT..............................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........................................................GCTTCGTTTCGTTTCG-GT.......................................................................................	18	2	0.50	0.00	0.00	0.50	0.00

161

chrXL_group1a:7700522-7700674 +

43.24

TAAAAATAAAAAAATGCTCG----------------------ATTGCTGCAACTAAGAAACAAATATTTTCA-------------GTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGATAACAGAAATACAAATCTCAAACAAATAAAGTAATACAAAATACTGAAAT------------AATACTAGACATACATACATGGTATCTAT----------GGTATGTTTGTTATTCTGAGCCTAGCCTAAAATACA-------TCAAAGATTACCCAAAGAGGAACTTCCTTCCAGGG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................AACTAT----------GGTAAGTTTGTT..................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...........................................................................ATACATACAxGGTATCTAT----------AGT...........................................................................	21	1	1.00	1.00	0.00	0.00	0.00

348

chr2:28321432-28321551 -

42.94

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGA---------------AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG -AAAAATCATAAAATTTTCGG--ACTTTAACTTCAAGCTTAATATTGTCTG----------------AAATTATAT-TTTTGCTATGCAATCATTTTATATACAAACAATTAATCGAATAAT-------------TATCGA----------TTTGTGGACAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....AATCATAAAATTATCAG--ACTT.......................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

257

chrXR_group8:3287020-3287143 +

42.42

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATT---------------------------------------AATTTATGTACATTGCTATGAAATCAATTG-AAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAATATTTTTTAATTTTG-TTTTTTTTAA-------GTAAATATTTTTTA------------AAAAGATTTTTTAATACATTTATGTTTAAATAAAATGGAGCTCTATTTAATTTCACTATTTTGATATTTAAAAAAAAATA-------------------------------------------T	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
......TTTTTTAATTTTG-TTTGTTTT...............................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00

354

chr2:28662062-28662174 -

39.31

TAAAAATAAAAAAATGCTCGATTGC-TGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACAT-TGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAATTTTAAGCCACTTTTAAATTATGTACAAAAAAGAGAGAAATATTTGAAAGAAATACTCATAAACAAACTTTAACAAAAATAAATCAAATACAGCTAAGAATACCCTCATA------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..............................................................TAAGCAAACTTTAAAAAA.....................................................................	18	1	1.00	0.00	1.00	0.00	0.00

432

chr4_group3:2225885-2226066 -

38.75

TAAAAATAAAAAAATGCTCG--AT---TGCTGCAACTAAGAAACAAA----TATTTTCAGTTGTTCATTGCAAATT-AATTTATGTACATTGCTATGAAATCAATTGAAAAT--------------------ATAATTGTATCCTA--GGCTTATCA----GCTGCAATGCCTCTATGAAGGG TCAGAATAAACCCAAGCTTTTAATATATGATAAATCCATAAAATGAAGTCTTCTTTTTATGCAATGATTCCAAAGGAAATATATGTACGTTTTTT-TAAACCAATTACAACTTCTTAAGATTAAACAGTATTTTGATAGTATGCCAATAGCTTTCCAATCCCTTAACACCCTGCCAAAATGGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........................................AATTATGTCTTCTTTTTAT...........................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

212

chrXR_group6:4206097-4206218 +

38.03

TAAAAATAAAAAAATGCTCGATTGC-----------------------------------------TGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTAT-----------GAAGGG ATAAATAAAAAAAAACCCCATATGAAATTATAGACAAAATGATGTCAAGAGATTATGATACATTTTAGCAACAAAAATAAAAACAACAACAAC------------------------------------------------------------------------------AATACAATCGTTAATTGTCGCACGAATA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
......................................................................................CAACAAC------------------------------------------------------------------------------AACACCATCGTT................	19	1	3.00	0.00	2.00	1.00	0.00
..............................................................................AAAAACAAGAACAAC------------------------------------------------------------------------------AAA.........................	18	5	0.20	0.00	0.20	0.00	0.00
.......................................................................................AACAAC------------------------------------------------------------------------------AACACCATCGTT................	18	1	1.00	0.00	1.00	0.00	0.00

chr2:28287376-28287475 +

37.93

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTT--CATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTATAATTATTTAATATTTTATTCATTTATTTATTTATTATTCTTTTTCAATTATTATTATTTTCTATTTATTTATTTTTATTTCTATTTTCTTTATTGA-------------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................................ATATTTATTTATTTTTTTTT.................................................................	20	10	0.10	0.00	0.10	0.00	0.00
..................................................................ATTTATGTATTTTTGTTT.................................................................	18	3	0.33	0.00	0.33	0.00	0.00

chr2:28172490-28172611 +

37.83

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTC-------------ATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAATATTGAA-----------GACAGAAATTTAGAAAAATGTGCTT--AAAAACTCTAGAATAATTTTTAAAAGAATTCTGTTTATAT-----------------------AGAAGAATTACATCTGGAAGTATTCTTTTAAAATGTCTT--CTAAGAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.................................................................................................................GAAGGACTACATCTGGAAG............................	19	1	1.00	1.00	0.00	0.00	0.00

587

Unknown_group_74:62606-62695 -

35.0

TAAAAATAAAA----AAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTCAAATCAATTGTCAATTGCGCGCTTTCCGA----CGGGAAATTATAATTTTATAATTCAATTATAAAATATCTTATGTACATAAATATTAAA---------------------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........TTGTCAATCGCGCGCTTTCCGG----CGGG...............................................................................................................	26	1	4.00	0.00	4.00	0.00	0.00
......TCAATTGTCAATCGCGCGCTTTC..........................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..........TTGTCAATCGCGCGCTTTCCGA----CGG................................................................................................................	25	1	3.00	0.00	3.00	0.00	0.00
..........TTGTCAATCGCGCGCTTTCCGA----CG.................................................................................................................	24	1	2.00	0.00	1.00	1.00	0.00
....AATCAATTGTCAATCGCGCGC..............................................................................................................................	21	1	2.00	0.00	0.00	1.00	1.00
......TCAATTGTCAATTGCGCGCTTA...........................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................TGCTCGCTGTCCGA----CGGGA..............................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........TTGTCAATCGCGCGCTTTCCGT----CGG................................................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
......TCAATTGTCAATCGCGCGCTTTCCG........................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
.......CAATTGTCAATCGCGCGCTTT...........................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................CGCGCGCTTTCCGA----CGGGAA.............................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
............GTCAATCGCGCGCTTTCCGG----CGGG...............................................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
..........TTGTCAATCGCGCGCTTTCCG........................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.............TCAATCGCGCGCTTTCCGA----CGG................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.........ATTGTCAATCGCGCGCTTTCC.........................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
................................................ATTTTATAATTGAATTAGAA...................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
...............AATCGCGCGCTTTCCGA----CGGG...............................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........TGTCAATCGCGCGCTTTCCGA----CG.................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..........TTGTCAATCGCGCGCTTTCCGA----CGGG...............................................................................................................	26	1	1.00	0.00	1.00	0.00	0.00
...........TGTCAATCGCGCGCTTTCCGG----CGGG...............................................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
..........TTGTCAATCGCGCGCTTTCCGG----CGGGA..............................................................................................................	27	1	1.00	0.00	1.00	0.00	0.00
.........ATTGTCAATAGCGCGCTTTCCGA----TG.................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
.........ATTGTCAATCGCTCGCTTTCCG........................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..............CAATCGCGCGCTTTCCGA----CGGGA..............................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.......CAATTGTCAATCGCGCGCTTTC..........................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................TCGCGCGCTTTCCGA----CGGGAA.............................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.........ATTGTCAACCGCGCGCTTTCCGA----...................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
......TCAATTGTCAACCGCGCGCTTTCCG........................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
.........GTTGTCAATCGCGCGCTTTCC.........................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................ATCGCGCGCTTTCCGA----CGG................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

droPer1 - 147 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_1:5889084-5889218 +

52.91

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GAT----------AGGTTTTTGCAACACAAAAAATAAACAAAGATTAGTTTCCAGTTATTAAATATTAATATATATATTTGAAGCAGAAATATGTATATTTTAGAATCGTTTCTGTGGGGTTTTCATTGCAATACCTTT--TATGAA

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

371

super_68:240729-240872 +

51.02

TAAAAATAAAAAAA--TGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTA-ATTTATGTACATTGC-TATGAAATCAATTGA--AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGAATATATTTTATTTTATTTATTTTATATAATTG-TGCATAATTATTTTC-GTTATTTAGTTTAAAGGACATTTATTTATTTCATATTTAATATTTATTTGATGAATATAATT-TATTTTATATTTACTATTTCTTTTATTTTTAT------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......................................................................................................ATGAAxATAATT-CATTTTA...............................	18	2	1.00	0.00	0.00	0.00	0.50	0.50
........................................................................................................GTTTATAATT-TATTTTATA.............................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
......................................................................CATTTATGTATTTTATATT................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................................................ATTTCTTTTGTTTTTAT------	18	4	0.25	0.00	0.25	0.00	0.00	0.00
...........................................................................................................TATAATT-TATTTTATAAA...........................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................GTTTATAATT-TATTTTAT..............................	18	2	0.50	0.00	0.50	0.00	0.00	0.00

422

super_693:4811-4957 +

49.66

TAAAAATAAAAAAATG------------------CTCGATTGCTGCAACTAAGAAACAAATATTT-----TCAGTT--GTTCATTGCAAATT-------AATTTATGTACATTGCTATGAAATCAATTGAAAATATAATT-GTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TACAGCCAGAATCACGAAAACGATTTCACTCTTTCTCGCTCTGTCTCACTCTAACACACAGGTTTCATGGTCGGTTTTGCCAATTGCAAAATATGAGTTCAAGGATCTCAGAACCTATAAAAGCCAGAGCAACCATATTTGGTATCC---------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................TCTAACACACAGGTTTCATGGTCGGT.........................................................................................................	26	9	6.56	0.22	0.22	0.00	0.00	6.11
.................................................TCTAACACACAGGTTTCATGGTCGG..........................................................................................................	25	9	2.44	0.56	0.89	0.00	0.00	1.00
................................................CTCTAACACACAGGTTTCATGGTCGGT.........................................................................................................	27	9	1.56	0.00	0.00	0.00	0.00	1.56
................................................................................................GTTCAAGGATCTCAGAACCC................................................................	20	2	7.00	0.00	0.00	0.00	0.00	7.00
...........................................................................................................TCAGAACCTATAAAAGCCAGAGCAAC...............................................	26	1	13.00	0.00	0.00	0.00	0.00	13.00
.................................................TCTAACACACAGGTTTCATGGTCGGG.........................................................................................................	26	9	1.33	0.00	0.00	0.00	0.00	1.33
..................................................................................................TCAAGGATCTCAGAACCC................................................................	18	2	5.50	0.00	0.00	0.00	0.00	5.50
...........................................................................................TATGAGTTCAAGGATCTCAGAACCC................................................................	25	2	4.50	0.00	0.00	0.00	0.00	4.50
...........................................................................................TATGAGTTCAAGGATCTTAGAACC.................................................................	24	2	4.00	0.00	0.00	0.00	0.00	4.00
.................................................TCTAACACACAGGTTTCATGGTCGGC.........................................................................................................	26	9	0.78	0.00	0.00	0.00	0.00	0.78
................................................................................................GTTCAAGGATCTCAGAACCT................................................................	20	2	3.50	0.00	0.00	0.00	0.00	3.50
.............................................................GTTTCATGGTCGGTTTTGC....................................................................................................	19	9	0.78	0.78	0.00	0.00	0.00	0.00
............................................................................................................................CAGAGCAACCAAATTTGGTAT...................................	21	2	3.50	3.00	0.00	0.00	0.50	0.00
....................................................................................TGCAAAATATGAGTTCAAGG............................................................................	20	2	3.00	2.50	0.00	0.00	0.50	0.00
................................................................................................GTTCAAGGATCTCAGAACC.................................................................	19	2	3.00	0.00	0.00	0.00	0.00	3.00
.................................................TCTAACACACAGGTTTCATGATCGGT.........................................................................................................	26	9	0.67	0.00	0.11	0.00	0.00	0.56
.................................................TCTAACACACAGGTTTCATGGTC............................................................................................................	23	10	0.60	0.00	0.40	0.00	0.00	0.20
.................................................TCTAACACACAGGTTTCATGGTCG...........................................................................................................	24	9	0.67	0.44	0.22	0.00	0.00	0.00
.................................................TCTAACACACAGGTTTCATGATC............................................................................................................	23	10	0.60	0.00	0.00	0.00	0.00	0.60
..........................................................................................ATATGAGTTCAAGGATCT........................................................................	18	2	3.00	0.00	0.00	0.00	0.00	3.00
...........................................................................................................TCAGAACCTATAAAAGCCAGAGCAACC..............................................	27	1	6.00	0.00	0.00	0.00	0.00	6.00
............................................................GGTTTCATGGTCGGTTTTGC....................................................................................................	20	9	0.67	0.67	0.00	0.00	0.00	0.00
..............................................................TTTCATGGTCGGTTTTGCCAA.................................................................................................	21	9	0.56	0.00	0.00	0.00	0.56	0.00
...................................................................................TTGCAAAATATGAGTTCAAGG............................................................................	21	2	2.50	2.50	0.00	0.00	0.00	0.00
............................................................GGTTTCATGGTCGGTTTTG.....................................................................................................	19	9	0.56	0.56	0.00	0.00	0.00	0.00
.................................................TCCAACACACAGGTTTCATGGTCGGT.........................................................................................................	26	9	0.56	0.00	0.00	0.00	0.00	0.56
..................................CTCGCCCTGTCTCTCTCTAAC.............................................................................................................................	21	8	0.63	0.00	0.00	0.00	0.00	0.63
.....................................................................................GCAAAATATGAGTTCAAGG............................................................................	19	2	2.50	2.50	0.00	0.00	0.00	0.00
.................................................TCTAACACACAGGTTTCATGGTCGGTT........................................................................................................	27	9	0.44	0.00	0.22	0.00	0.00	0.22
..................................................................................................TCAAGGATCTCAGAACCTCTAAGAG.........................................................	25	2	2.00	0.00	0.00	0.00	0.00	2.00
...............................................................................................AGTTCAAGGATCTCAGAACC.................................................................	20	2	2.00	0.00	0.00	0.00	0.50	1.50
..............................................................TTTCATGGTCGGTTTTGCC...................................................................................................	19	9	0.44	0.00	0.00	0.11	0.22	0.11
.................................................TCTAACACACAGGTTTCATGGT.............................................................................................................	22	10	0.40	0.00	0.20	0.00	0.00	0.20
................................................................................................GTTCAAGGATCTCAAAAC..................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
....................................................................................................AAGGATCTCAGAACCTATAAGAGCC.......................................................	25	2	2.00	0.00	0.00	0.00	0.50	1.50
.....................................................................GTCGGTTTTGCCAATTGCAAA..........................................................................................	21	9	0.44	0.00	0.00	0.00	0.00	0.44
..................................CTCGCTCTGTCTCTCTCTAACACACAG.......................................................................................................................	27	8	0.50	0.00	0.00	0.00	0.00	0.50
......................................................................................CAAAATATGAGTTCAAGGATC.........................................................................	21	2	2.00	0.50	0.00	0.00	0.00	1.50
...............................................................................................AGTTCAAGGATCTCAGAACCC................................................................	21	2	2.00	0.00	0.00	0.00	0.00	2.00
...........................................................................................TATGAGTTCAAGGATCTTAGAACCT................................................................	25	2	2.00	0.00	0.00	0.00	0.00	2.00
..................................................................................................TCAAGGATCCCAGAACCC................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
...............................................................................................AGTTCAAGGATCTCAGAACCT................................................................	21	2	2.00	0.00	0.00	0.00	0.00	2.00
................................................................................................GTTCAAGGATCACAGAACCT................................................................	20	2	2.00	0.00	0.00	0.00	0.00	2.00
................................................................................................GTTCAAGGATCTCAGAAC..................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
.....................................................ACACACAGGTTTCATGGTCGG..........................................................................................................	21	9	0.33	0.22	0.11	0.00	0.00	0.00
....................................................................................TGCAAAATATGAGTTCAAGGA...........................................................................	21	2	1.50	1.00	0.00	0.50	0.00	0.00
................................................CTCTAACACACAGGTTTCATGGTCGT..........................................................................................................	26	10	0.30	0.00	0.00	0.00	0.00	0.30
.....................................................................................................................TAAAAGCCAGAGCAACCAAA...........................................	20	2	1.50	1.00	0.00	0.50	0.00	0.00
..........................................................................................ATATGAGTTCAAGGATCTCAGAACC.................................................................	25	2	1.50	0.00	0.00	0.00	0.00	1.50
.................................................TCTAACACACAGGTTTCATGGTCT...........................................................................................................	24	10	0.30	0.10	0.00	0.00	0.00	0.20
.......................................................ACACAGGTTTCATGGTCGG..........................................................................................................	19	9	0.33	0.33	0.00	0.00	0.00	0.00
....................................................AACACACAGGTTTCATGGTCG...........................................................................................................	21	9	0.33	0.33	0.00	0.00	0.00	0.00
......................................................CACACAGGTTTCATGGTCG...........................................................................................................	19	9	0.33	0.33	0.00	0.00	0.00	0.00
......................ATTTCACTCTTTCTCGCTCTGTC.......................................................................................................................................	23	6	0.50	0.00	0.00	0.00	0.00	0.50
.........................................................................................................TCTCAGAACCCATAAGAGCCAGAGCAAC...............................................	28	2	1.50	0.00	0.00	0.00	0.00	1.50
.................................................................................................TTCAAGGATCTCAGAACC.................................................................	18	2	1.50	0.00	0.00	0.00	0.00	1.50
...........................................................................................TATGAGTTCAAGGATCTCAGAAC..................................................................	23	2	1.50	0.00	0.00	0.00	0.00	1.50
..................................................................................................TCAAGGATCACAGAACCTATAAAAGCC.......................................................	27	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................CTCTAACACACAGGTTTCATGGTCGG..........................................................................................................	26	9	0.33	0.00	0.11	0.00	0.00	0.22
..........................TATTCTTTCTCGCTCTGTCT......................................................................................................................................	20	10	0.30	0.00	0.00	0.00	0.00	0.30
...........................................................................................TATGAGTTCAAGGATCTCAAAACCC................................................................	25	2	1.50	0.00	0.00	0.00	0.00	1.50
..................................................................................................TCAAGGATCTCAGAACCTATAAGAGCC.......................................................	27	2	1.50	0.50	0.00	0.00	0.00	1.00
....................................................................................................AAGGATCTCAGAACCTCTAAGAGCC.......................................................	25	1	3.00	0.00	0.00	0.00	0.00	3.00
.............................................................................................TGAGTTCAAGGATCTCAGAACCC................................................................	23	2	1.50	0.00	0.00	0.00	0.00	1.50
.................................................................................................TTCAAGGATCTCAGAACCT................................................................	19	2	1.50	0.00	0.00	0.00	0.00	1.50
.............................................................................................................................AGAGCAACCAAATTTGGTATC..................................	21	2	1.50	1.00	0.00	0.00	0.50	0.00
.................................................TCTAACACACAGGTTTCATGATCGGTTT.......................................................................................................	28	9	0.33	0.11	0.00	0.00	0.00	0.22
.........................TCACTCTTTCTCGCTCTGTC.......................................................................................................................................	20	6	0.50	0.50	0.00	0.00	0.00	0.00
................................................CTCTAACACACAGGTTTCATGGTCG...........................................................................................................	25	9	0.33	0.00	0.33	0.00	0.00	0.00
.........................................................................................................TCTCAGAACCTATAAGAGCC.......................................................	20	2	1.50	0.00	0.00	0.00	0.00	1.50
.................................................TCCAACACACAGGTTTCATGGTCG...........................................................................................................	24	9	0.33	0.00	0.33	0.00	0.00	0.00
................................................CTCTAACACACAGGTTTCATTGTCGG..........................................................................................................	26	9	0.33	0.00	0.00	0.00	0.00	0.33
.................................................TCTAACACACAGGTTTCATGATCGG..........................................................................................................	25	9	0.33	0.00	0.22	0.00	0.00	0.11

754

super_13:446504-446647 -

49.33

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT--TATGTACATTGCTATGAAATCAA-----TTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAA----------ATTCGAAGATAAAAGACGAGAAATAATATTTTAATGCTATTAAATACCAAAAAAACACTAAATAAAACACTAAAAAATTAAGAAAAGTAAATAAATACTAAAATACTATCTTAAACTAATGCAAACAATTTAAATTGCA

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

474

super_4865:1750-1876 +

47.21

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCA-----AATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAAAATAAGTTTATGCTGGGAGATGGCATGAAATAAGTAAATACTTATGGATGTGTATCTTTCGAGCAAGATACTTTTTTATTGTTCGGTAAAATAGTTATAAAAGATAGGCAAATTGTACAATTA-------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

567

super_1:4689401-4689553 -

46.8

TAAAAATAAAAAAATGCTCGATTGCTGCAA-CTAAGAAACAAATATTTTCAGTTGT-----------TCATTGCAAATTAATTTATGTACATTGCTATGA---AATCAATTGA---------------------------AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TACTTCTACAAATATTCCTAATATTTTCCGGTAATGAAACGCATGATTTTACTTTACAAATATTTAAACGACTCAGATTCATTCATGGGTATTCCTATCCATAAATCCATATAATATAGTAGCAAAATAAAATAAAAATGATAAATGATTCTA------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

375

super_68:329662-329801 +

46.04

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGA-AAATATAATTGTATCCTAGGCTTATCAGCTGCAATG----CCTCTATGAAGGG CAAAA------AACTTCAAGGACATTGAGGGCAGAAAATATATTTGTTT---TATTTATTTTTTT----TTGTTATAGGGAGATGGGACATCGAACGCGAAACAAAATCGTGGTAAAGAAATATTCGCTATAAGGAAATTCTTTATAAAAAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................AAGGACATTCAGGGCAGA.....................................................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
..............GTCGAGGACATTGAGGGC........................................................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
.................AAGGACATTCAGGGTAGA.....................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
...............TCAAGGACATTCAGGGTAGA.....................................................................................................................	20	1	2.00	0.00	0.00	0.00	0.00	2.00
...............................................TT---TTTTTATTTTTTT----TTTTT..............................................................................	20	40	0.03	0.00	0.03	0.00	0.00	0.00
.................AAGGACATTCAGGGCAGG.....................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
................TAAGGACATTCAGGGCAGA.....................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................TTTTTT---TATTTTTTTTTTT----T..................................................................................	20	40	0.03	0.00	0.03	0.00	0.00	0.00

685

super_7:2177192-2177297 -

42.53

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAA--TGCCTCTATGAAGGG A---------------------------------GATACAGATACCTT----AGCTAGCTGCAACTTAATTGCTGTGCCCGAGAATGCAATCAATTGGAATGAATGCTGCCTCAAACAGTTGTCACTTGCCACTTGCCACTCT------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..............................................................AACTTAAGTGCTGTGCCT.....................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00

1169

super_6510:1028-1193 -

41.62

TAAAAATAAAAAAATG---------CTCGATTGCTGCAACTAAGAAACAAATATTT-TCAGTTGTT------CATTGCAAATTA---ATTTATGTACAT----TGCTATGAAATCAATTGAAAATATAATTGT-ATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AATCACGAAAACAATTTCACTCTTTCTCGCTCTGTCTCACTCTAACACACAGGTTTCATAGTCGGTTTTGCCAATTGCAAAATATGAGTTCAAGGATCTCAGAACCCATAAGAGCTAGAGCAACCAAATTTGGTAT-CCACACTCCTG---TGTTCCGCCTCCGC-AAAGG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................TCTAACACACAGGTTTCATGGTCGGT.........................................................................................................	26	9	6.56	0.22	0.22	0.00	0.00	6.11
........................................TCTAACACACAGGTTTCATGGTCGG..........................................................................................................	25	9	2.44	0.56	0.89	0.00	0.00	1.00
.......................................CTCTAACACACAGGTTTCATGGTCGGT.........................................................................................................	27	9	1.56	0.00	0.00	0.00	0.00	1.56
.......................................................................................GTTCAAGGATCTCAGAACCC................................................................	20	2	7.00	0.00	0.00	0.00	0.00	7.00
........................................TCTAACACACAGGTTTCATGGTCGGG.........................................................................................................	26	9	1.33	0.00	0.00	0.00	0.00	1.33
.........................................................................................TCAAGGATCTCAGAACCC................................................................	18	2	5.50	0.00	0.00	0.00	0.00	5.50
..................................................................................................................CTAGAGCAACCAAATTTGGTA....................................	21	1	10.00	9.00	0.00	0.00	1.00	0.00
..................................................................................TATGAGTTCAAGGATCTCAGAACCC................................................................	25	2	4.50	0.00	0.00	0.00	0.00	4.50
..................................................................................TATGAGTTCAAGGATCTTAGAACC.................................................................	24	2	4.00	0.00	0.00	0.00	0.00	4.00
..........................................................................................................TATAAGAGCTAGAGCAACG..............................................	19	1	8.00	6.00	0.00	1.00	1.00	0.00
....................................................GTTTCATGGTCGGTTTTGC....................................................................................................	19	9	0.78	0.78	0.00	0.00	0.00	0.00
........................................TCTAACACACAGGTTTCATGGTCGGC.........................................................................................................	26	9	0.78	0.00	0.00	0.00	0.00	0.78
.................................................................................................................GCTAGAGTAACCAAATTTGG......................................	20	1	7.00	7.00	0.00	0.00	0.00	0.00
.......................................................................................GTTCAAGGATCTCAGAACCT................................................................	20	2	3.50	0.00	0.00	0.00	0.00	3.50
...................................................................................................................CAGAGCAACCAAATTTGGTAT-..................................	21	2	3.50	3.00	0.00	0.00	0.50	0.00
...........................................................................TGCAAAATATGAGTTCAAGG............................................................................	20	2	3.00	2.50	0.00	0.00	0.50	0.00
...................................................GGTTTCATGGTCGGTTTTGC....................................................................................................	20	9	0.67	0.67	0.00	0.00	0.00	0.00
........................................TCTAACACACAGGTTTCATGATC............................................................................................................	23	10	0.60	0.00	0.00	0.00	0.00	0.60
........................................TCTAACACACAGGTTTCATGATCGGT.........................................................................................................	26	9	0.67	0.00	0.11	0.00	0.00	0.56
........................................TCTAACACACAGGTTTCATGGTC............................................................................................................	23	10	0.60	0.00	0.40	0.00	0.00	0.20
.................................................................................ATATGAGTTCAAGGATCT........................................................................	18	2	3.00	0.00	0.00	0.00	0.00	3.00
........................................TCTAACACACAGGTTTCATGGTCG...........................................................................................................	24	9	0.67	0.44	0.22	0.00	0.00	0.00
.......................................................................................GTTCAAGGATCTCAGAACC.................................................................	19	2	3.00	0.00	0.00	0.00	0.00	3.00
...................................................GGTTTCATGGTCGGTTTTG.....................................................................................................	19	9	0.56	0.56	0.00	0.00	0.00	0.00
............................................................................GCAAAATATGAGTTCAAGG............................................................................	19	2	2.50	2.50	0.00	0.00	0.00	0.00
.........................CTCGCCCTGTCTCTCTCTAAC.............................................................................................................................	21	8	0.63	0.00	0.00	0.00	0.00	0.63
.....................................................TTTCATGGTCGGTTTTGCCAA.................................................................................................	21	9	0.56	0.00	0.00	0.00	0.56	0.00
...........................................................................................................ATAAGAGCTAGAGCAACGAT............................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
........................................TCCAACACACAGGTTTCATGGTCGGT.........................................................................................................	26	9	0.56	0.00	0.00	0.00	0.00	0.56
...................................................................................................................TAGAGTAACCAAATTTGGTAC-..................................	21	1	5.00	2.00	0.00	1.00	2.00	0.00
............................................................................................................TAAGxGCTAGAGTAACCAAATTTGG......................................	24	1	5.00	1.00	0.00	0.00	0.00	4.00
............................................................................................................TAAGxGCTAGAGTAACCAAATT.........................................	21	1	5.00	4.00	0.00	0.00	1.00	0.00
.................................................................................................................GCTAGAGCAACCAAATTTGG......................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................TTGCAAAATATGAGTTCAAGG............................................................................	21	2	2.50	2.50	0.00	0.00	0.00	0.00
.........................................................................................................CTATAAGAGCTAGAGCAACG..............................................	20	1	5.00	4.00	0.00	1.00	0.00	0.00
........................................TCTAACACACAGGTTTCATGGT.............................................................................................................	22	10	0.40	0.00	0.20	0.00	0.00	0.20
.....................................................TTTCATGGTCGGTTTTGCC...................................................................................................	19	9	0.44	0.00	0.00	0.11	0.22	0.11
..........................................................................................CAAGGATCTCAGAACCCATAAGAGCT.......................................................	26	1	4.00	0.00	0.00	0.00	0.00	4.00
..................................................................................................................CTAGAGTAACCAAATTTGG......................................	19	1	4.00	4.00	0.00	0.00	0.00	0.00
...........................................................................................AAGGATCTCAGAACCTATAAGAGCC.......................................................	25	2	2.00	0.00	0.00	0.00	0.50	1.50
.........................................................................................TCAAGGATCTCAGAACCTCTAAGAG.........................................................	25	2	2.00	0.00	0.00	0.00	0.00	2.00
..................................................................................TATGAGTTCAAGGATCTTAGAACCT................................................................	25	2	2.00	0.00	0.00	0.00	0.00	2.00
......................................................................................AGTTCAAGGATCTCAGAACCC................................................................	21	2	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................................................GTTCAAGGATCTCAAAAC..................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
........................................TCTAACACACAGGTTTCATGGTCGGTT........................................................................................................	27	9	0.44	0.00	0.22	0.00	0.00	0.22
.........................................................................................................CTATAAGAGCTAGAGCAACGA.............................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
.........................................................................................TCAAGGATCCCAGAACCC................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................................................GTTCAAGGATCTCAGAAC..................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
......................................................................................AGTTCAAGGATCTCAGAACC.................................................................	20	2	2.00	0.00	0.00	0.00	0.50	1.50
.......................................................................................GTTCAAGGATCACAGAACCT................................................................	20	2	2.00	0.00	0.00	0.00	0.00	2.00
.............................................................................CAAAATATGAGTTCAAGGATC.........................................................................	21	2	2.00	0.50	0.00	0.00	0.00	1.50
.........................CTCGCTCTGTCTCTCTCTAACACACAG.......................................................................................................................	27	8	0.50	0.00	0.00	0.00	0.00	0.50
......................................................................................AGTTCAAGGATCTCAGAACCT................................................................	21	2	2.00	0.00	0.00	0.00	0.00	2.00
........................................................................................................ACTATAAGAGCTAGAGCAAC...............................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
............................................................GTCGGTTTTGCCAATTGCAAA..........................................................................................	21	9	0.44	0.00	0.00	0.00	0.00	0.44
..................................................................................TATGAGTTCAAGGATCTCAGAAC..................................................................	23	2	1.50	0.00	0.00	0.00	0.00	1.50
...........................................AACACACAGGTTTCATGGTCG...........................................................................................................	21	9	0.33	0.33	0.00	0.00	0.00	0.00
...........................................................................TGCAAAATATGAGTTCAAGGA...........................................................................	21	2	1.50	1.00	0.00	0.50	0.00	0.00
..................................................................................................................TTAGAGTAACCAAATTTGGTA....................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
.................TATTCTTTCTCGCTCTGTCT......................................................................................................................................	20	10	0.30	0.00	0.00	0.00	0.00	0.30
.................................................................................ATATGAGTTCAAGGATCTCAGAACC.................................................................	25	2	1.50	0.00	0.00	0.00	0.00	1.50
................................................................................................TCTCAGAACCCATAAGAGCCAGAGCAAC...............................................	28	2	1.50	0.00	0.00	0.00	0.00	1.50
................TCACTCTTTCTCGCTCTGTC.......................................................................................................................................	20	6	0.50	0.50	0.00	0.00	0.00	0.00
................................................................................................................................TTTGGTAT-CCACACTCCTC---TG..................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................................TTCAAGGATCTCAGAACC.................................................................	18	2	1.50	0.00	0.00	0.00	0.00	1.50
........................................TCTAACACACAGGTTTCATGGTCT...........................................................................................................	24	10	0.30	0.10	0.00	0.00	0.00	0.20
........................................TCTAACACACAGGTTTCATGATCGG..........................................................................................................	25	9	0.33	0.00	0.22	0.00	0.00	0.11
....................................................................................TGAGTTCAAGGATCTCAGAACCC................................................................	23	2	1.50	0.00	0.00	0.00	0.00	1.50
.............ATTTCACTCTTTCTCGCTCTGTC.......................................................................................................................................	23	6	0.50	0.00	0.00	0.00	0.00	0.50
..........................................................................................CAAGGATCTCAGAACCCATAAGA..........................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
..................................................................................TATGAGTTCAAGGATCTCAAAACCC................................................................	25	2	1.50	0.00	0.00	0.00	0.00	1.50
................................................................................................TCTCAGAACCTATAAGAGCC.......................................................	20	2	1.50	0.00	0.00	0.00	0.00	1.50
............................................ACACACAGGTTTCATGGTCGG..........................................................................................................	21	9	0.33	0.22	0.11	0.00	0.00	0.00
.........................................................................................TCAAGGATCTCAGAACCTATAAGAGCC.......................................................	27	2	1.50	0.50	0.00	0.00	0.00	1.00
.......................................CTCTAACACACAGGTTTCATGGTCG...........................................................................................................	25	9	0.33	0.00	0.33	0.00	0.00	0.00
........................................TCTAACACACAGGTTTCATGATCGGTTT.......................................................................................................	28	9	0.33	0.11	0.00	0.00	0.00	0.22
.......................................CTCTAACACACAGGTTTCATTGTCGG..........................................................................................................	26	9	0.33	0.00	0.00	0.00	0.00	0.33
.............................................CACACAGGTTTCATGGTCG...........................................................................................................	19	9	0.33	0.33	0.00	0.00	0.00	0.00
....................................................................................................................AGAGCAACCAAATTTGGTAT-C.................................	21	2	1.50	1.00	0.00	0.00	0.50	0.00
.......................................CTCTAACACACAGGTTTCATGGTCGT..........................................................................................................	26	10	0.30	0.00	0.00	0.00	0.00	0.30
........................................TCCAACACACAGGTTTCATGGTCG...........................................................................................................	24	9	0.33	0.00	0.33	0.00	0.00	0.00
........................................................................................TTCAAGGATCTCAGAACCT................................................................	19	2	1.50	0.00	0.00	0.00	0.00	1.50
.......................................CTCTAACACACAGGTTTCATGGTCGG..........................................................................................................	26	9	0.33	0.00	0.11	0.00	0.00	0.22
..............................................ACACAGGTTTCATGGTCGG..........................................................................................................	19	9	0.33	0.33	0.00	0.00	0.00	0.00
............................................................................................................TAAAAGCCAGAGCAACCAAA...........................................	20	2	1.50	1.00	0.00	0.50	0.00	0.00

854

super_22:1319109-1319286 -

40.73

TAAAAATAAAA---------------------------------------------AAATGCTCGATTGCTGCAAC-------------TAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TACAAAATAAAACATCTGAAAATATTCAATAAAAAAAATATAAATTATATTAAAATAAATGTTTTTATTTTGAAAAATACATAAAAAAAAACGAAATATTTTTTTAAAATTCTTTATAA----TTAATTTATTTA--TTATTA---------------------TTAAATATTGTATTTTTTAGTTAATAGGTATATATGTATAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................................................................................TATGA---------------------TTAAATATTGTAT............................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
..........................................................................................................................................TATGA---------------------TTAAATATTGTATG...........................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
......................................................ATAAATGTTATTAATTTGA....................................................................................................................................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
.............................TAAAAAAAAAAAAAATTA..............................................................................................................................................................	18	20	0.05	0.00	0.00	0.00	0.00	0.05
....................................................................................................................................................................................TTAGxGAATAGGTATATATGTA...	21	1	1.00	1.00	0.00	0.00	0.00	0.00

442

super_1855:3386-3501 +

39.73

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATC------------------AATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAATAAAAAA------------TATATTTCAAACGCATATATTTCCA------TATTAAAAATTAAAATATTAT---TTTCATTAAAAAAAAGAAAATTTTTCTCGTACTTAAAAATATATATATTTCTTATTT----------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................................................................ACATTTTTCTCGxACTTAA.................................................	18	1	2.00	0.00	1.00	0.00	0.00	1.00
...............................................................................................GAACATTTTTCTCGxACTTAA.................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00

super_3:3794811-3794917 +

39.58

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTATATAATAAGAATATTTTATGTATTTTTCTAAAAA--TAATATATACATATGTACATATATAATAAATATAA-CACA----------------------------TTTAACC---ACTATTTATTTTAAATGTTTCTGT------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.............................................ATACATAAGTACATATATA...................................................................................	19	14	0.07	0.00	0.00	0.00	0.00	0.07
.........................................ATATAGAxGTATGTACATAT......................................................................................	19	3	0.33	0.00	0.33	0.00	0.00	0.00
.............................................ATACATATATACATATATAGT.................................................................................	21	7	0.14	0.00	0.00	0.00	0.00	0.14

659

super_5:2337419-2337539 -

39.24

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTA------------------------------ATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TATAAAAAAAAAAA---------------ATTAAAAAACCAAAAACACC-----------ACAAAATGGTGGTAAATTGTTTTCGAATTGCCTTTGAGACGTTTATTCATACCTGA-----------------------------AAAGTCATCAAAT-TAATGCACCCAAATAAAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
TAAAAAAAAAAAAA---------------ATTA................................................................................................................................................	18	20	0.05	0.00	0.00	0.00	0.00	0.05
.........AAAAA---------------ATTAAAAAACCCAAAA....................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................AAACACC-----------ACACAATGGGG..........................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.ATAAAAAAAAAAA---------------AGGAA...............................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00	0.00

968

super_35:816159-816272 -

38.51

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTATAATAT--TTATATTTATTTACAATAT---------------TTATATTTATTTATAATAT--------TTATATTTATTTATAATATTTATAGTTAAAATAAATATATTTCATATTTA--AATTACAA-ATTTTTATA-----	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......AT--TTATATTTATTTTAAA........................................................................................................................	18	4	0.50	0.00	0.00	0.00	0.00	0.50
..............................................................AT--------TTATATTTATTTTAAA...........................................................	18	4	0.50	0.00	0.00	0.00	0.00	0.50
............................AT---------------TTATATTTATTTTAAA......................................................................................	18	4	0.50	0.00	0.00	0.00	0.00	0.50
........................................................................TTGTATTTATTTATAAGA.........................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
..............................................................AT--------ATATATTTATGTATAAT..........................................................	19	11	0.09	0.00	0.09	0.00	0.00	0.00
............................................................................ATTTATTTATAAGAGTTA.....................................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
.................................................ATTTATTTATAAGAG--------TTA........................................................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
............................AT---------------ATATATTTATGTATAAT.....................................................................................	19	11	0.09	0.00	0.09	0.00	0.00	0.00
..............................................................CT--------ATATATTTATTTATAAT..........................................................	19	2	0.50	0.00	0.50	0.00	0.00	0.00
.............................T---------------ATATAGTTATTTATAAT.....................................................................................	18	2	0.50	0.00	0.50	0.00	0.00	0.00
............................CT---------------ATATATTTATTTATAAT.....................................................................................	19	2	0.50	0.00	0.50	0.00	0.00	0.00
.............................................TTGTATTTATTTATAAGA....................................................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
...............................................................T--------ATATAGTTATTTATAAT..........................................................	18	2	0.50	0.00	0.50	0.00	0.00	0.00

411

super_457:14680-14778 +

38.21

TAAAAATAAAA-AAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAAATTTAACTTTCATTTTTGATTTTTATAA---------TATTATTTGTATTTTTTCAAAACCAT-ATATATTTATACATTATTTTAAATAAAATTAAAAAAATAATT---------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

658

super_5:2336550-2336720 -

38.11

TAAAAATAAAAAAATGCTCGATTGCTGCAACT-AAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCT--ATGAAATCAATTGAAAATATAATTGTATCCTAGGCT--TATCAGCTGCAA----TGCCTC---------------TATGAAGGG CAAGGAAAGAAACACTCTGCACTACCCTGAAAAAATGTTGAGTTAATCTCAGACTTTTGTTTTCCACTAGAAAAGGTGCTTTGCATAAATAGGAAAAACAGAAACAAAACTTAATTATGTGGCATTTACAGCATGAAATAAACCTCCTGTTGCCTTTCACGATAATTACGG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................AAATGCTGACTTAATCTC.........................................................................................................................	18	1	5.00	0.00	0.00	0.00	0.00	5.00
...GGAAAGxATCACTCTGCACT....................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................................................ATAAACAGAAAAAACAGAA....................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

super_1:4131463-4131560 +

37.93

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGT--TCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
---AAATAAAATAAGATTCGAATTTCGCCAGCAGCAAACAAATGGCTGCATTTGATCTGAGTGTGCCATCACTTCCATAAGGATTTATGGAACGCGTTGAA------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

559

super_0:11354740-11354861 -

37.89

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAA------TATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CAAAAATCCAT-ATCGCAATGCTCCCACAGTAAATAATTAGATATGC-----------------------------CAGCTAATTTGGTATCTTTTGGAAACGGGAACATTATACGTTCTCGTGATTG-TTGTTGCTGTCCATGGAAAATGGG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................................................................................................GTTCTCxAGATTG-TTGTTGCT................	20	1	1.00	0.00	0.00	0.00	0.00	1.00

982

super_38:33941-34060 -

37.16

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAATAAT----------ACAAATAAAATAATAAAAATACAA-----TTCCAATAATAATAATAAA--AATATAATAATAATATTAAAAATAC------AAATATAATA----ATAATACAAAAAAATAATAATAATACAAATAAAAT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................CAATAATTTTAATAAA--AAT.............................................................................	19	1	8.00	0.00	0.00	0.00	0.00	8.00
..............................................................AAC--AATATTATAATAATA.................................................................	18	2	3.00	0.00	0.50	0.00	0.00	2.50
.............................................................TAAC--AATATTATAATAAT..................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
.............................................................TAAC--AATATTATAATAATA.................................................................	19	2	1.50	0.00	0.50	0.00	0.00	1.00

814

super_18:1185478-1185656 -

37.11

TAAAAATAAAAAAATGCTCGATTG--------------CTGCAACTAAGAAAC---AAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACAT-------TGCTATGAAATC--AATTGAAAATATA-----------------------------ATTGTATCCTAGGCTTATCA-GCTGCAATGCCTCTATGAAGGG TTTCACTGGCAAACTATTCGATTTTCAGAGCTTTTTTTCTACAACTAATACTCTTTAAATCT-------------TTCAAAATTCTTCTACGTGGATGATTTCTTGCTGGAGATTTCTCAGTACAAATATGGGGGTTGTAGCATTTTTGTTACGGTCATACGTGTGGC-----------ATTACACAATGTCGAAGCGAAGGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...........................................................................................................................CAAATxTGGGAGTTGTAGCATT..........................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................................................................................AGCCTTGTTGTTACGGTC..............................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

853

super_22:1316565-1316664 -

37.09

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAAT----TTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAATAGTAAAAAAATATATAATAATAGCA------TAATATATAATAATAGTATAATAATATATAATAATAGCCTAATATATAATAATAATATATAAATTAAAAAT---------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................TAATAATAGTTTAATAGT...........................................................................................	18	1	6.00	0.00	3.00	0.00	0.00	3.00
...........................................AACAATATTATAATAATA..........................................................................................	18	2	3.00	0.00	0.50	0.00	0.00	2.50
..........................................TAACAATATTATAATAAT...........................................................................................	18	2	2.00	0.00	0.00	0.00	0.00	2.00
..........................................TAACAATATTATAATAATA..........................................................................................	19	2	1.50	0.00	0.50	0.00	0.00	1.00

droWil1 - 280 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

1564

scaffold_180698:8557325-8557469 -

52.87

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGT--------TGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG ACCAAAGAGAAAT-ATCTCAAACTC--AAACTCACAAACAAGACACATCAGCGCGCAAGAGCAACAACGCAAAGAA-CAATTAAACAATTCTATTAAATTGATCGAAAATATAAACATTT-CACAGCATAACAACAACAAA-----AGAAAAGGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................................................................................................GACAAGAAA-----AGAAAAGGA	18	3	0.67	0.00	0.67	0.00	0.00
........................................................................................................................................AAAAA-----AGAAAAGGA	20	20	0.05	0.00	0.05	0.00	0.00
.....................................................................................................................................ACAAAAAA-----AGAAAAAGA	19	41	0.02	0.00	0.02	0.00	0.00
..............................................................AACxACTCAAAGAA-CAATT.........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................................................AACAAAAAA-----AGAAAAGCA	18	11	0.09	0.00	0.09	0.00	0.00
.................................................................................................................................AACAGCAAAAAA-----AGAAAA...	18	10	0.10	0.00	0.10	0.00	0.00
....................................................................................................................................AACAACAAA-----AGAAAAGAG	19	5	0.20	0.00	0.20	0.00	0.00
.......................................................................................................................T-AAAAGCATAACAACAACAAA-----AGAAA....	26	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................AACATTT-AAAAGCATAAC.......................	18	2	0.50	0.00	0.50	0.00	0.00
.................................................................................................................................AACAACAACAAA-----AGAAAAGGA	21	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................AACAAAAACAAA-----AGAACA...	18	26	0.04	0.00	0.04	0.00	0.00
........................................................................................................................................AAAAA-----AGAAAAGGA	18	39	0.03	0.00	0.03	0.00	0.00
........................................................................................................................................ATAAA-----ACAAAAGGA	19	7	0.14	0.00	0.14	0.00	0.00
.................................................................................................................................AACAACAACAGA-----AGAAGA...	18	6	0.17	0.00	0.17	0.00	0.00
.........................................................................................................................................AAAA-----AGAAAAGGA	18	39	0.03	0.00	0.03	0.00	0.00
.......................................................................................................................................AACAAA-----AGAAGAGAA	19	6	0.17	0.00	0.17	0.00	0.00
.................................................................................................................................AACAAAAACAAA-----AGAAAG...	18	34	0.03	0.00	0.03	0.00	0.00
.................................................................................................................................AACAACAAxAGA-----AGAAAAGGA	20	1	1.00	0.00	1.00	0.00	0.00

1928

scaffold_180745:1377463-1377610 -

52.51

TAAAAATAAAAAAA--TGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAAT-----------------------TAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAATAATATTTAAAATTGATTG----------------AACAAACTTTTTTGCTTCTTGATAACTTTTTTAAAATTTGACTCCTTTTTTTATAAATTTTTTGTTTTACATAAAAGTCTATTTAAAATATAAATATAAATAAGAATTACAAACTTTTATGCTCCT--------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................................................................ATATAAATATAAATAGGT.............................	18	10	0.20	0.00	0.20	0.00	0.00
........................................................................................................................TATAAATATAAATATAAAT.................................	19	47	0.02	0.00	0.02	0.00	0.00
..................TTTG----------------AACAAATTTTTTTGC.......................................................................................................................	19	3	0.33	0.00	0.00	0.00	0.33
......................................................................................TTTTAAGAATTTTTTGTT....................................................................	18	3	0.33	0.00	0.33	0.00	0.00
....................................................................................TTTTTTATACATTTTATGT.....................................................................	19	3	0.33	0.00	0.33	0.00	0.00
..............................................................................................................................TATAAATATAAATATAAAT...........................	19	47	0.02	0.00	0.02	0.00	0.00

1375

scaffold_180697:2129235-2129376 -

50.98

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATG--TAC-------ATTGCTATG-----AAATCAATTGA--AAATATAATTGTATCCTAGGCT---TATCAGCTGCAATGCCTCTATGAAGGG CATAAATAAGAATAAAATTCATTGTTCTA----AGAGGTGA-TAGCTGCCCTCCTCTAT-------CAATATTTGGTTACACCCTTGATTCTCATGATGAGAAATGAATTTTTAAAACAAG----ATTTCTAGGCCTTATATCAAAAGCAAGACTTCT--------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................................................AGAAGTAAATTTTTAAAA.................................................	18	1	2.00	0.00	2.00	0.00	0.00
.TTAAATAGGAATAAAATT...................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.....ATAAAAATAAAATGCATT...............................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TTAAAACAAG----AATTCTGGGC...............................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................................................CATTGATTCTGATGATGAG.................................................................	19	1	1.00	0.00	1.00	0.00	0.00

2636

scaffold_181096:4586173-4586316 -

50.94

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAA--GAAACAAATATTTTCAGTTGTTCA---------TTGCAAATTAATTTAT--GTACATTGCTATGAAA-TCAATTGA----AAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAG-GCAAGAAAAT-------------AACTGAAGGGGGGGAATATGTATGTATGTACATATGTATGAATGTATGTTTGTCTGTCAGTGTGTTGTTATCAAAGCCAATTGCTAGAGTCTGTCATTGACGCTCTGGCCCAGCG-CCGTGATGTATGCAA------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..............................................TGTGTGTATGTACATATGTATGT................................................................................................	23	6	3.00	0.33	2.00	0.67	0.00
..............................................TGTTTGTATGTACATATGTATG.................................................................................................	22	8	1.88	0.00	0.75	1.00	0.13
....................................................TATGTATGTATGTATGAATGTA...........................................................................................	22	34	0.15	0.00	0.09	0.06	0.00
..............................................TGTTTGTATGTACATATGTAT..................................................................................................	21	12	0.33	0.00	0.08	0.17	0.08
..............................................TGTGTGTATGTACATATGTATG.................................................................................................	22	8	0.50	0.13	0.25	0.13	0.00
...............................................GTTTGTATGTACATATGGATG.................................................................................................	21	2	2.00	0.00	0.00	0.00	2.00
......................................TGTGAATATGTATGTATGTACA.........................................................................................................	22	2	1.00	0.00	0.00	1.00	0.00
.................................................................ATGAATGTATGTGTGTGT..................................................................................	18	14	0.14	0.00	0.14	0.00	0.00
..............................................TGTTTGTATGTACATATGTA...................................................................................................	20	14	0.14	0.00	0.07	0.07	0.00
....................................................TATGTATGTATGTATGAATGT............................................................................................	21	36	0.06	0.00	0.03	0.00	0.03
.....................................GTGGGAATATGTATGTAGGTA...........................................................................................................	21	1	2.00	0.00	1.00	1.00	0.00
.............................................ATGTATGTATGTAGGTATGT....................................................................................................	20	46	0.02	0.02	0.00	0.00	0.00
................................................TATGTATGTACATATGTTTGGATGT............................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
..............................................TGCTTGTATGTACATATGTAT..................................................................................................	21	4	0.25	0.00	0.00	0.25	0.00
...............................................GTATGCATGTACATATGTATGT................................................................................................	22	7	0.14	0.00	0.14	0.00	0.00
..................................................TGTATGTACATATGTATG.................................................................................................	18	15	0.07	0.00	0.07	0.00	0.00
........................................................................................................................................................TATGCAA------	18	2	0.50	0.00	0.50	0.00	0.00
.........................................................ACGTATGTATGAATGTATG.........................................................................................	19	23	0.04	0.00	0.04	0.00	0.00
......................................................TGTACATATGTAAGATTGTATG.........................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TATGAATGTATGTGTGTGT..................................................................................	19	11	0.09	0.00	0.09	0.00	0.00
...............................................................ATATGAATGTATGTGTGT....................................................................................	18	21	0.05	0.00	0.05	0.00	0.00
...................................................CTATGTACATATGTATGT................................................................................................	18	34	0.03	0.00	0.03	0.00	0.00
....................................................TATGTACATATGTATGTATGTATA.........................................................................................	24	15	0.07	0.00	0.07	0.00	0.00
............................................TATGTATGTATGTAGGTATG.....................................................................................................	20	42	0.02	0.00	0.00	0.00	0.02
...........................................................ATATGTATGAATGTGTGTGTG.....................................................................................	21	2	0.50	0.00	0.00	0.50	0.00
..........................................AATATGTCTGGATGTACA.........................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................................TATGTATGTAGGCACATATGTATG.................................................................................................	24	2	0.50	0.00	0.50	0.00	0.00
...................................................GTATGTACATATGTATGTGTGT............................................................................................	22	9	0.11	0.00	0.11	0.00	0.00
...........................................................ATATGTATGTATGTATGTGTGT....................................................................................	22	29	0.03	0.00	0.03	0.00	0.00
..................................................AGTATGTAAATATGTATG.................................................................................................	18	11	0.09	0.00	0.00	0.09	0.00
.....................................................ATGTATGTATGTATGAATGTA...........................................................................................	21	39	0.03	0.00	0.03	0.00	0.00
..............................................TGTATGTATGTACATATGTATGT................................................................................................	23	5	0.20	0.00	0.20	0.00	0.00
AAAG-GCAAxATAAT-------------AACTG....................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................CGTATGTATGAATGTATG.........................................................................................	18	27	0.04	0.00	0.04	0.00	0.00
.......................................................ATACGTATGTATGAATGTA...........................................................................................	19	17	0.06	0.00	0.06	0.00	0.00
.....................................................................................................AAACCAATTGCTAGAGGC..............................................	18	1	1.00	0.00	1.00	0.00	0.00
..............................................TGTATGTACGTACGTATGTA...................................................................................................	20	26	0.04	0.00	0.04	0.00	0.00
.................................................ATGTATGTACATATGTATGCA...............................................................................................	21	12	0.08	0.08	0.00	0.00	0.00
.................................................ATGTATGTGCATATGTATGTA...............................................................................................	21	10	0.10	0.00	0.10	0.00	0.00
...................................................GTATGTACATATGTGTGTATG.............................................................................................	21	10	0.10	0.00	0.10	0.00	0.00
...........................................ATATGTATGTATGTAGATATAT....................................................................................................	22	20	0.05	0.00	0.00	0.00	0.05
.................................................ATGTATGTACATGTGTATGT................................................................................................	20	12	0.08	0.08	0.00	0.00	0.00
....................................................TATGTACATATGGATGTATG.............................................................................................	20	14	0.07	0.00	0.00	0.00	0.07
............................................TATGTATGTATGTAAATGT......................................................................................................	19	35	0.03	0.03	0.00	0.00	0.00

1920

scaffold_180745:144778-144929 -

50.84

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAG-AAACAAATATTTTCA-GTTGTTC-ATTGCAAATTAATTTATGTAC-ATTGCTATGAAATCAATT-GAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAATGGAAATTAGGCTTTAGGGGAACATTTAAATAAATCAATGTATTAACTTTGCCCAATCACAACGAAATCTTTAAATAATTAATATAGAAATAATTAGAACCAATAATTGCATAGGAGATCGTTTCTCTGCATAGTTTACATGAGGAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................................................................................................AGTAA	20	21	0.05	0.00	0.05	0.00	0.00
...............................................................................................................................................CAGGAGGAA	18	4	0.25	0.00	0.25	0.00	0.00
..................................ATAGATCAATGTCTTAAC....................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.....................................CATCAATGTATGAACTTTGCCC.............................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................................AAA	18	23	0.04	0.00	0.04	0.00	0.00
.................................................................................................................................................AAAGGAA	18	36	0.03	0.00	0.03	0.00	0.00
.......................................................................................................ATCAATATTTGCATAGGA...............................	18	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................................................AATAGGAA	18	11	0.09	0.00	0.09	0.00	0.00
...................................................................................................................................................AGGAA	18	48	0.02	0.00	0.02	0.00	0.00
........................................................................................ATTGAAATAATTTGAACC..............................................	18	1	1.00	0.00	0.00	0.00	1.00
......................................................................................................................................................AA	18	13	0.08	0.08	0.00	0.00	0.00
..............................................................................................................................................TGATGAGGAA	18	2	0.50	0.00	0.50	0.00	0.00

2975

scaffold_181130:9293023-9293167 -

49.66

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT---TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTA--GGCTTATCAGCTGCAATGCCTCTATGAAGGG ATTTTATAT--CCATTCTAAATCT------TTAACACAAAATTGTTTTCAATTTTCTGTAGCATTTTATTAGAAAATTGCCGGTTCTCTCATAGAAATTAGCACCTCATTTGTCTCATTAAGTTTAGTTAAAAGATTTTCCTCAATTAACGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................TTATCAGAAAATTGGCGG.....................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................................................GTAGCATTTTATTAGAAAA............................................................................	19	1	1.00	0.00	1.00	0.00	0.00

326

scaffold_180708:8944789-8944918 +

49.44

TAAAAATAA-------------AAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATT---TATGTACATTGCT-ATGAA----ATCAATT-GAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTAAAACAATTTAAATGTAAACAAAAATAGTTGAGAATTTCATATAAAAGACAAAT----TCAGTAATTGATTCAAAA-TAATGGCTAATTTTCAGAGTAAATAAAAATGATTAATTATAAGATAAAAGAGTATC----------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................TAATTGATTCAAAA-GACT......................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
........................AATTAGTTGAGATTTTCA...............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......AATTTAAATGCAAACAAAAG..............................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................AAATTAGTTGAGATTTTCA...............................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..AAAACAATTTAAAAGAAAA....................................................................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
.................................................................AATTGATTCAAAA-GACTG.....................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...............................................................GTAATTGATTCAAAA-GACT......................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
......CAATTTAAATGCAAACAAAAG..............................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00

2620

scaffold_181096:4327721-4327867 -

49.32

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAA---------------------------------TCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTA------TGAAGGG CAAATACACA------------------------------CTTTTTTCCAGTCGACTGCTCT-------ATTATGCTAAAAACTGTGAATCTAAAGTGTGTTATATGGCATAATCCACTAACGAAAATTGAGCACAAAGT--TATTATGTGATTTTTTGCTCGCCTGCGCCTATATAATTGAAGAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................................................................................................................TTGATTTTTTGCTCGCAT....................	18	1	1.00	0.00	1.00	0.00	0.00
........................................CTTTTTGCCAGTCAACTGC...............................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

1695

scaffold_180701:3419725-3419868 -

48.68

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAG--------------GCTTATCAGCTGCAATGCCTCTATGAAGG---G AAATTATAAAATAA-TTACGAATTTTGTAATAAAAAATTATTTATCGTTACTGTTTCTTAGCCATTC-----------GTCATCATG--------ATAAACAAATTTTATATTCAAAACCCCAATATTCGCACTTATCTACATACATATGTTTATGTAGATATA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................................................................................................ATATATA	20	2	1.00	0.50	0.00	0.50	0.00
............................................................................................................................................GATAGATATGTTTATGTAGAT...	21	1	2.00	0.00	1.00	1.00	0.00
....................AATTTTGAAATGAAAAAT..............................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................................................................ATGGATATGTTTATGTAGATA..	21	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................................................................TAGATATGTTTATGTAGATAT.	21	1	1.00	0.00	1.00	0.00	0.00

1850

scaffold_180708:3582210-3582353 -

48.29

TAAAAAT--------------------------AAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTT-TCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATC---AATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTAAAAAGTTTTCTTAGGAAATTTATGATATTGAACACAAACTTTCCCTGCTTTAAAAAAGAAGTCTCTCTTTGGAAGTTGTTAATCTTAAA--AAACCAAGTATTTGGTATTAAAATAGAAATTTGTAAATTGAAGTGTTTCATA-------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................AGGATATTGAACACAAAGT......................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................................................TT-------------------------------	25	10	0.10	0.00	0.10	0.00	0.00
....................................................................................................TGTATTTGCTATTAAAAT...........................................................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................AAAGGAGCCTCTCTTTGG......................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00

205

scaffold_180701:3539677-3539815 +

48.26

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAATAATTGAATTATAA-TGTTTTTTTTTTTTGAATAGTGTTTATTTTAAGTTCGTCTTTACAAAATATAAAAAAACCATAGATAAGAAT-CTATTAAGAAA------TTATATTAGGTAGATTTTTGTATACTTCTTTATTCAATA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............AA-TGTTTATTGTTTTTGAAT...............................................................................................................	20	2	9.50	0.00	9.50	0.00	0.00
...............AA-TGTTTATTTTGTTTGAAT...............................................................................................................	20	2	2.50	0.50	2.00	0.00	0.00
................A-TGTTTATTGTTTTTGAAT...............................................................................................................	19	2	2.50	0.00	2.50	0.00	0.00
...............AA-TGTTTTTTGTGTTTGA.................................................................................................................	18	2	2.00	0.00	2.00	0.00	0.00
...............AA-TGTTTATTGTTTTTGA.................................................................................................................	18	2	2.00	0.00	2.00	0.00	0.00
...............AA-TGTTTATTTTGTTTGAA................................................................................................................	19	3	1.33	0.00	1.33	0.00	0.00
...............AA-TGTTTTTTGTGTTTGAA................................................................................................................	19	2	1.50	0.00	1.50	0.00	0.00
...............AA-TGTTTTTTGTGTTTGAAT...............................................................................................................	20	2	1.00	0.00	1.00	0.00	0.00
................A-TGTTTTTTGTGTTTGAA................................................................................................................	18	3	0.67	0.00	0.67	0.00	0.00
...............AA-TGTTTATTGTTTTTGAA................................................................................................................	19	2	1.00	0.00	1.00	0.00	0.00
................A-TGTTTATTTTGTTTGAA................................................................................................................	18	5	0.40	0.00	0.40	0.00	0.00
................A-TGTTTTTTGTGTTTGAAT...............................................................................................................	19	2	1.00	0.00	1.00	0.00	0.00
...............AA-TGTTTATTTTGTTTGA.................................................................................................................	18	3	0.67	0.00	0.67	0.00	0.00
................A-TGTTTATTTTGTTTGAAT...............................................................................................................	19	4	0.50	0.00	0.50	0.00	0.00
....................TTTTTTTTTTTTGAAGAGGG...........................................................................................................	20	3	0.33	0.00	0.33	0.00	0.00
..............................................................................................................ATATTAGTTAGCTTTTTG...................	18	3	0.33	0.00	0.33	0.00	0.00
................................................................................................................ATTAGGGAGATTTTTGTATT...............	20	2	0.50	0.00	0.50	0.00	0.00
.................................................................................................................................................TT	25	10	0.10	0.00	0.10	0.00	0.00
............TATAA-TTGTTTTTTTTTT....................................................................................................................	18	43	0.02	0.00	0.02	0.00	0.00
.....................TTTTTTTTTTTGAGTAGGGT..........................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
........................................................CGTTACAAAAAATAAAAAA........................................................................	19	5	0.20	0.00	0.20	0.00	0.00

557

scaffold_180916:1873450-1873586 +

48.17

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAA-ACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGA-----AATCAATTGAAAATATAATTGTATCCTAGGCT---TATCAGCTGCAATGCCTCTATGAAGGG TATTACTAAAGA----CTTTAT-ACTTAAACTTTAAAAAAAAA--CGTTTA---GTTTATCGCATTTTATTTGACATATTCTATTAATTTCTACAATT-----AATAGTTAAGTTGATTAGAAGTGCCTAATAAACTTTAAA---TC-TTAAATAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................CAATAAAAA--CGTTTA---GTT...................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
............................................................................................ACAATT-----AGTAATTAAGTT.........................................	18	1	1.00	0.00	1.00	0.00	0.00

1527

scaffold_180698:6892021-6892169 -

48.04

TAAAAATAAAA-AAATGCTCGATTGCTGCAACTAAGAAACAAATATTTT--CAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGC-TTA-TCAGCTGCAATGCCTCTATGAAGGG TGTAGATAGAACCCATACTCCCCTACTAT-TCTCATCATCAGATCCCTTGGCCGCCTCTTTTTGCTATTAACATTTTATACATTAATTTGCG--CAAATAAAGTTGCCGCAACATACGCGTACTCACGTAACCGCAATTGAACTGGGCAGAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................................................................................................................AG	18	2	0.50	0.00	0.50	0.00	0.00
..................................................................................TTAATGTGCG--CxAATAAAG.................................................	18	1	1.00	0.00	0.00	0.00	1.00

1083

scaffold_181130:5460426-5460577 +

48.0

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCA-----------TTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTAT-GAAGGG TTAGAATCGAATCCAATCCCCTCATTGTAACAC--ACATATCTATTCTTAAATGTATGTTTAACTAGAATTGTAAGTTAATT-GATTAAGTTGTAGTTGAGTTACTTTTAAATCAAATTT-AACTAAGTT---TCGATTTCCATACACCTATTGACTTG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................................TTCTAGTTGATTTACTTTTAAAT..............................................	23	1	1.00	0.00	1.00	0.00	0.00
.......................................................ATTTTTAACTAGATTTGT......................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................CTTCTTAAATTTATGTTTA.................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................ATT-GAATTAGTTGTAGTT.............................................................	18	2	0.50	0.00	0.50	0.00	0.00

3036

scaffold_181136:1166007-1166147 -

47.65

TAAAAATAAAA-------AAATGCTCGATTGCTGCAACTA--------AGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTAC-ATTGCTATGAAATCAATTGAAAATATAAT--TGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGTCATTAAGGCGGAACAAAGTACGCCGGGTCTCTAGTAAATAAATAAAGAAACGTA------AAAAAGTCAAAAGC--ATTGACTGAAGTACTATTGTCGTAAAATTA-----TAATATTGGTGACTTTATTACACATATAAACGACTATGCC-----------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................CGTA------AAGAAGTCAACAGC--A.....................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................................CACCTATAAACGACTGTGC............	19	3	0.33	0.00	0.00	0.00	0.33
................................................................................................................................TAATTACACATATAAACGACTAGGCC-----------	26	2	0.50	0.00	0.50	0.00	0.00
........................................................................................................................................CATATAAACGACTATGCC-----------	21	2	0.50	0.00	0.50	0.00	0.00
..................................................................................................................TAATATTGGTGAGTTGATTAC..............................	21	5	0.20	0.00	0.20	0.00	0.00
..................................................................................................................................ATTACACATATAAACGGCT................	19	3	0.33	0.00	0.33	0.00	0.00
.................................................................................................................................AATTACACATATTAACGACT................	20	2	0.50	0.00	0.50	0.00	0.00
............................................................................................................T-----TAATATTGGTGAGTTTATTACA.............................	23	5	0.20	0.00	0.20	0.00	0.00
.....................................................................................................................TATTGGTGAGTTTATTATACATA.........................	23	5	0.20	0.00	0.20	0.00	0.00
.....................................................................................................................................ACACATATAAACGACTGTGCC-----------	21	3	0.33	0.00	0.00	0.00	0.33
...........................................................................................................................................ATAAACGACTATGCC-----------	19	2	0.50	0.00	0.50	0.00	0.00
..................................................................................................................TAATATTGGTGAGTTTGTTA...............................	20	5	0.20	0.00	0.20	0.00	0.00
.........................................................................................................ATTT-----TAATATTGGTGAGTT....................................	19	7	0.14	0.00	0.14	0.00	0.00
....................................................................................................................................TACACATATAAATGACTA...............	18	3	0.33	0.00	0.00	0.00	0.33
..................AAGTACGCCGGGTCTCTAGT...............................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................TTAATTACACATATAAACGACT................	22	4	0.25	0.00	0.25	0.00	0.00
...............................................................................................................................TTAATTACACATATAAAGGACT................	22	2	0.50	0.00	0.00	0.00	0.50
......................................................................................................................................CACATATAAACGACTATGC............	19	2	0.50	0.00	0.50	0.00	0.00
.....................................................................................................................................ACACATACAAACGACTGTGCC-----------	21	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................................TAATTACACATATAAACGACT................	21	4	0.25	0.00	0.00	0.25	0.00
.....................................................................................................................................ATACATATAAACGACTGTGCC-----------	21	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................ATATAAACGACTATGCC-----------	21	2	0.50	0.00	0.50	0.00	0.00
.......................................................................................................................................ACATATAAACGACTGTGCC-----------	19	3	0.33	0.00	0.00	0.00	0.33
.................................................................................................................................AATTACACATATAAACGACTG...............	21	3	0.33	0.00	0.00	0.00	0.33
.................................................................................................................................TATTACACATATAAACGGCTA...............	21	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................CATATAAACGACTGTGCC-----------	18	3	0.33	0.00	0.33	0.00	0.00
.................................................................................................................................AATTACACATATAAACGACT................	20	4	0.25	0.00	0.25	0.00	0.00
...............................................................................................................................TTAATTACACATATTAACGACT................	22	2	0.50	0.00	0.50	0.00	0.00
....................................................................................................................................TACACATATAAGCGACTGTGCC-----------	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................................TTAATTACAGATATAAACGA..................	20	3	0.33	0.00	0.33	0.00	0.00
..............................................AAAGAAACATA------ACAAAGT...............................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
.....................................................................................................................TATTGGTGAGTTTATTACA.............................	19	5	0.20	0.00	0.20	0.00	0.00
..............................GCTCGAGTAAATAAATAA.....................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................ATATAAACGACTATGCC-----------	19	2	0.50	0.00	0.50	0.00	0.00
.....TTAAGGCGGAACAAAGTTCGC...........................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
............................................ATAATGAAACGTA------ACAAA.................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................AATATTGGTGAGTTGATTACA.............................	21	5	0.20	0.00	0.00	0.20	0.00
................................................................................TTGACTGAAGTAGAATTG...................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................TTGGTGAGTTAATTACACATATAAACG...................	27	6	0.17	0.00	0.17	0.00	0.00
........................................ATAAATAAAGAAGCGGA------A.....................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

1230

scaffold_181150:4128463-4128593 +

47.59

TAAAAATAAAAAAATGCTCGATTGCTGCAACT-AAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAA-------------------------TTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAATTTAATTAGAACTCTTTAGAAATATAAATAGAGAGGAATTTAGACTTTTGTTTATTA-------AATTCATCAAAAATCATAACGATGACTAAGTGTATTTTGCATTAAAATTAGTAAATAATATAATTGTAT-----------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......TTAATTAGAATTCTTTAC.....................................................................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00
......TTAATTAGAATTCTTTACAA...................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................................TTGTAT-----------------------------------	18	2	0.50	0.00	0.50	0.00	0.00
...............................AATAGAGAxGAATTTAGGC...........................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

924

scaffold_181096:6019232-6019367 +

47.51

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATG----AAATCAATTGAAAATATAATTGTA-TCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AACAAAAAAAAAACTATTAGAAGACGACAGTTTCAAATCAAATATTTGTTTTAGATTGTTAA-----------AGGATATTTCAAAAAAGAATTACAAGTAAAAAGGCCGTTTTTTTTTAATGTTAATCAATGAAAATACTACA-----AGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....AAAAAAAAACxATGAGAAGA................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................AAATATTTGATCTAGATT...............................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........AACTATTAGAAGACGACAGTTTCA.....................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..............................................TxTTTAAGATTGTTCA-----------AGGATA.........................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...................................................................................AAAAAAGAATTGCTAGTA...................................................	18	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................TTTTTATAGTGTTAATCA......................	18	1	1.00	0.00	0.00	1.00	0.00
............................................TTTGTTTTAAATTGTGAA-----------...............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..............TATTAGAAGACxACAGTTTAAAA...................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00

2817

scaffold_181096:10691004-10691155 -

47.4

TAAAAATAAAAAAAT-------GCTCGATTGCTGCAACTAAGAAACAAATATTTTC----AGTTGTTCATTGCAAA-TTAATTTATGTACATTGCTATGA------------AATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGCGGTTATTAATATTTAATTCACTTGTTTGTTTTGACAAATCA----ATGT--TCAATCAA-------TTGCAAAGTTCAATCAACTAAATTGCCACTCTATTATTGCAATAATCAATTAGCAATT----TGAGGCTTCAATCAATCAACATTAA--TCGCCATCAATTG

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

2403

scaffold_181024:1399343-1399482 -

47.3

TAAAAATAAAAAAATGCTCGATTGCTGCAACTA-AGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAA-GGG TTATAATACGCACACACAGCATTTGGGGAATTCGAGATGGGGTGGTATTTAGAGGTACTTGGCCCCAAAAGATAT-------GCTATGAATTTCATAGTTCGTATTTTGTTGTTCTTGTTGCTGCGGCTGC--TGCTGCTATGTAAGTC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................................TTTTGTTGTTCTTGCTGC...........................	18	134	0.01	0.00	0.01	0.00	0.00
.........................................................................................................TTTGTTGTTCTTGTTGCTGC........................	20	3	0.33	0.00	0.33	0.00	0.00
...........................................................................................................TATTGTTTTTGTTGCTGCGG......................	20	5	0.20	0.00	0.20	0.00	0.00
.......................................................................................................ATTATGTTGTTCTTGTTG............................	18	14	0.07	0.00	0.07	0.00	0.00

1984

scaffold_180772:2238006-2238144 -

47.26

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAAC----------------------------AAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAA------------------------ATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CAAAACCACAAA-TTGCAT--------------AGCAAAAGGCAGTGTTACTGATTTTTAAAACATTAAATAACAACGATGAATTATAAA-------------------------GAATCAATTCAATATTGAGAATAGTTCCATAATTAATAGCTGATTATATTTTGCACTTAAAAGC--------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................ATTATAAG-------------------------GAAGCAATTC..........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.............................................TGTAACCGATTTTTAAAA........................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00

3146

scaffold_181150:3402439-3402568 -

47.25

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTA-TGAAATCAATTGAAAAT-ATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAGAAATGAATAGGTG-TAGATACATAGGTCTAAAAC-AAAATGTTGATAGTTAC---TAGGCATCTAATTT-----------TATTAAACCCAATTGAAAATCATCATTAC-TGCCCGATTTA--GAATCCATTGATCGAAAAATGTG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....AGGAATAGATG-TAGATAC.............................................................................................................................	18	2	3.00	0.00	0.00	0.00	3.00
..............................GTAAAAG-AAAATGTTGAT....................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
.....AGGAATAGATG-TAGATACA............................................................................................................................	19	2	0.50	0.00	0.00	0.00	0.50
.................................AAGC-AAAATGTTGATTGT.................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................ATTGAAAATAATCATTTC-....................................	18	2	0.50	0.00	0.50	0.00	0.00
..GAAATGAATAGGTG-TAGATACATAGGTC......................................................................................................................	28	1	1.00	1.00	0.00	0.00	0.00

droVir3 - 215 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

251

scaffold_12855:7203873-7204022 +

53.01

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAA----ACAAATATTTTCAG----TTGTTCAT--TGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGAAAATGAATAAATATA--TATGCTCCAATTAAAATTGAAACTACTAT---CCGATCGAAGGTCTTTGTTCAAATTCATTTGAGGGGT--TTTTCGCACTTTTTGGAAAATCCATCACTCCCCGATGGAAATGGGCTTCAATGACTTAGTGGGTGG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................................................TTTGTTCAAATTTATTTGAGGGGT--GT................................................................	26	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................ATTCATTTGAGGTGT--GTTTCGC...........................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................GTTCAAATTCATTTGAGGGGT--..................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................................TTTGTTCAAATTCATGTGAGGGGT--..................................................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................................TTTGTTCAAATTCATTTGATGTGT--TT................................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................................................TGGGCTTCAATGAGTTTGTG.....	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................................................TGAGGGGT--GTTTCGCACTT.......................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................................AATTCATTTGAGGGGT--GTTTCG............................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................TTGTTCAAATTCATTTGAGGGGT--GT................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00

1544

scaffold_12723:4586396-4586528 -

52.02

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAA-------ATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAGTACATCAATAAAATTTCAATACATTTAGTAGACAAATATTTTTGTTT-ATAATTTTATATGTATGCATGTAGTATTTTATATACTCATTTAATATAGTAGTAGATAAATGTATATAATTCTTTTTAGC--------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................................GATAACTGTAxATAATTCT...........................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.....CTACATCAATAAATTTTC...................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................TTTAGAGGTATGCATGTA.............................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................................................................ATATAGxACTAGATAAATGT.....................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

1738

scaffold_12855:5683963-5684105 -

51.63

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATT--GCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TATAAACGCTTAACTGCATTTTTGGTGCTGGTAAAAATCTAAAATTT---GTTTGACAATGTTGAAAAAT-CATATTCAATGATCAAGAAACTCAGCTTAATGTTTTACTTATTTATTT--GCATTATGCACACTGCGGCTTAGAATGT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................AATCTAAAATTT---GTTTGACAATGTTG.....................................................................................	26	1	1.00	0.00	1.00	0.00	0.00	0.00

2747

scaffold_12970:8203762-8203903 -

51.48

TAAAAATAAAAAAATGCT--CGATTGCTGCAACTAAGAAACAAATA--TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTAT---CAGCTGCAATGCCTCTATGAA-GGG CAATAATACAGACTGGCCTACGAGTTCTATAATTAGTTAATTGTTTCTGTTTCAATTGTTTG-TGAAATTCAAT--ACATACG-TGCTGTGTATTTATGT--AAAT------GCAT-CTAGACATATATACATATATAATATACATATGTATATG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................TGTTTG-TGAAAGTCAAT--ATA............................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................................................................................................AACATACATATGTACATG	18	7	0.14	0.00	0.00	0.00	0.00	0.14

619

scaffold_12963:558649-558793 +

51.32

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACA-AATATTTTCAGTTGTTCATT--GCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATT-GTATCCTA-GGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAGAGCTATATATTTTTTAAGTTCCATAATATATTCAGCATAGTTTTATTACTTGTCTTTTTCTTGAATTATTTTTATTATTTA-ATTTTT-AGTATTTAATAATACAATTTG----TAAGCCTTTATTAGATT-AATCGCTTAACGAATGT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

2352

scaffold_12963:3824764-3824911 -

50.61

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCT-------TATCAGCTGCAATGCCTCTATGAAGGG TTGAAATAAATGTAAGCTCGAATTTGTTATTAAAAACATGTCTCTCTGCTATCACTAATAACCAATTGATTTTTGTAAAATTTATTGGAGTTGCTTAAACTAAATCTAAGATCCTAAGATCCCGCTATTCCAGCTGCTCT---TCTATTA---A	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................GTTGTAAAATTTATTGAA.................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................TAAATCTAAGATxCTAAGAAC.................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................................................CTGTTCCAGCTGCTGT---TCT........	19	3	0.33	0.00	0.00	0.00	0.00	0.33

1905

scaffold_12875:15149577-15149722 -

49.98

TAAAAATAAAAAAA----TGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAA--ATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCC----TCTATGAAGGG GAAAATTTAAAGAGATCATTTTTAAGTATTAAAACAGAAAA----------TTGTGTGGATAATTTAAATTAACTGAGCTACGAAGCTAAACACGTTTAATTTTCTATACAATTAC-TCTGAAGAAAAAAAATCTCAATGTTGAAATTCATAAAATA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................................ACAATTAC-TTTGAACAAA..............................	18	1	43.00	0.00	0.00	0.00	15.00	28.00
...........................................................................................................TACAATTAC-TTTGAACAAA..............................	19	1	2.00	0.00	0.00	0.00	1.00	1.00
............................................................................................................ACAATTAC-TTTGAACAAAA.............................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................................................CAATTAC-TTTGAACAAAAA............................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................................................................................................................ATCTTGAAATTCATAAGA..	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................ACAGTAAA----------TTGTGAGGAT................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
..............................................................................................................AATTAC-TTTGAACAAAAA............................	18	2	0.50	0.00	0.00	0.00	0.00	0.50
...........................................................................................................TACAATTAC-TTTGAACAA...............................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

3467

scaffold_13049:19665104-19665241 -

49.1

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAA--TTGTATCCTAGGCTTATCA------GCTGCA-ATGCCTCTATGAAGGG TAAAAA--------------ATCGCCGCCACTGCTCCACAACTGTTGAGAGTTTTTCTA---CTATTTTTTTATTTTTATTT-TTTGAATGCAATTCATCGTTTGATATGGCAACTTGCCCTTATCGCCCACAGCTGTAGCTGCAGCTGTTGCTGT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................................................................TGTAGCTGCGGCTGTGGCTG.	20	9	0.11	0.00	0.11	0.00	0.00	0.00
.......................................AATTGTTGAGAGCTTTTCT..................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

3259

scaffold_13049:963562-963706 -

48.99

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTG-TTCAT-TGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG ATAAAGAAGAGGAATGAGAGATCGCGCATAAAGTGAATCATTTTTTAGCATTAAATCCACATGTATATCAAACTAAGCACATGGACAGAAAAAGTAAAAGAAAAGGAGCTGCGTCACTTGACTAGCTGC---TA-TCAACTGTTAATTG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................................................................................TG	19	18	0.06	0.00	0.00	0.00	0.06	0.00
...................................................................................................................................................TG	18	24	0.04	0.00	0.00	0.00	0.04	0.00
..................................................................................................................................................TTG	21	8	0.13	0.00	0.13	0.00	0.00	0.00
.......................................................................................CAAAAAGTAAGAGAAAAGGA..........................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................GTCAATTTTTAGCATTAAA..............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................ACACATGGACAGCAAAAG.......................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................................................................................................ATTTG	20	5	0.20	0.00	0.00	0.00	0.00	0.20
.................................................................................................................................................AATG	18	10	0.10	0.00	0.00	0.10	0.00	0.00

3400

scaffold_13049:10754328-10754455 -

48.85

TAAAAATAAAAAAATGCTCG------------------------------------------------A-TTGCTGCAAC-TAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAAT-TTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAGAAAA-ATGAAATGCATGCGTTAATGGGAAAATTAAATTTTTTTTGCAAATTTAAATTATATTTGGATTTAAAGCAATTTAAAATGCAAGTGTTCACAGTCATTAATTAAAAATTAAATC-------------------------------------------------TACCAAC--------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................ATTTAAATTTTATATGGA.................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................AACAGTTTAAAATGCAAGTGT.......................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00

2950

scaffold_13042:3425288-3425430 -

48.67

TAAAAATAAAAAAAT--GCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAA-------------------------GGG-------------------- CAAGCGCAAAGTAATTTTGCCAGCAGCTAAAAGTAGGCAACACATATTTTTAA--ACTCATTAAAAAGTAA-------------------------------------------------ATAAAAAGCTGCAAAGCACTTTTTAATATACAATTTATAAATATGTATAAAATGTATATATTTGTGTGTATCTA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................................................................................................TAAAATGGATATGTTTGTGT.......	20	2	0.50	0.50	0.00	0.00	0.00	0.00
...............................................................................................................................................TAATATxCAATTTTTAAATATGTA...........................	23	2	0.50	0.00	0.00	0.50	0.00	0.00

1528

scaffold_12723:2038632-2038790 -

48.12

TAAAAATAAAAA--AATGCTC-GATTGCTGCAA----CTAAGAAACA--AATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTA-TGAAATCAATTGAAAATA-TAATT-----GTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGAAAACAAAAATAAATATTTTGTATTTTACATCTTTCTAAGAAATATCAATATTTCCATTACTT-A--GCTCAATGTTTAATACATTTTATCATCGTAACCAGTCAGAAGCCTCCATTGAACCGAACTCAACTCAACTCAAC-TCAACTCCTAAATCATTGA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

3482

scaffold_13049:20255340-20255479 -

47.64

TAAAAATAAAAAAATGCTCGATTGCTGCAAC-TAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAAT---------TGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GTCGGACTAACAAGTGAGAGGTTGCCAGTTCAAATTGAACAGATATGTTTGATTTTTTGGTTTA-TTTAATTTGTTGTTATTAA-----------TTAAGAAAACAGCAATAATAAATTTACAACAAGCAAATAAATTAAGA-----ATGAATGGAT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................AGATATGTTTGATGTTCT...................................................................................................	18	2	0.50	0.00	0.00	0.00	0.00	0.50
.............................................................TTT-TTTAATTTGTTxTTATTAA-----------..............................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................AGAAATGTTTGATTTTTTTGTTT..............................................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00

2307

scaffold_12963:110172-110308 -

47.56

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCT---------------------TATCAGCTGCAATGCCTCTATGAAGGG
TAATATTACAAATTTACTATATTTTTCTAGCTCAACAGAAACTATCGACATTTGGTATTAACACCCTA-T------------------------------ATACAAATGTCGCCTTCCACTTTAAACTGCAAAACTCAAGAGCTCATTTAAAATATTTCTATGCATGA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

1139

scaffold_13047:12581951-12582094 +

47.44

TAAAAATAAAAAA--ATGCTCGATTGCT---GCAACTA------AGAAACAAATATTTTCA-GTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CAAAGGCCGTTACAAATACTG--TATCTTAAGCAGCTTAAAGCTTAAAGCAAAAATATCCAAGAAGTTCGA----AAAAAGTTTGTACGCTTTTCAAAAACTTGAT------A---TATTTTTTCAACATCTTTTCGGCAAGATTACCTCGTACAAGAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................................AAGTTCGA----AAAGAGTTTGGA........................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
.................................................CAAAAATATGTAAGAAGT............................................................................................	18	1	2.00	2.00	0.00	0.00	0.00	0.00
................................................................AGTTCGA----AAAGAGTTTGGA........................................................................	19	1	2.00	2.00	0.00	0.00	0.00	0.00
.................................................................GTTCGA----AAAGAGTTTGGA........................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................AAGTTCGA----AGAAAxTTTGTA........................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................TATCTGAAGCAGCTTAAGG.....................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
CAAAGACCGTTACAACTACT...........................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00

3435

scaffold_13049:14719288-14719431 -

47.38

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAA-------------------------------------------------------TTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAACTTTCATAATAGACG------------------------TATTTTATATTTCATAGCACTTTAAATTACATTTT------CAAAATTAATGAATGTCACAAAACGTAACGCTTCAAGTAATTGAATCGTTCAACCCTCTCAAAGCCGAAATTACAATCAAAT----------------------------TGAAGAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................................................................................................................ATGAG	18	10	0.10	0.00	0.00	0.10	0.00	0.00
.....................................................................................................................................................................................................AAGAG	18	19	0.05	0.05	0.00	0.00	0.00	0.00

666

scaffold_12963:5827527-5827669 +

47.14

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAA-----TTAATTTATGT-----------ACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GAGAACTTAAAATATGTGAAATC----CAATTAAA--------ATTTCCACTC----AATCTAAAATCGTTGAAATGATGTGCGCTCTGACTGCATAATTAAAATATTAATTA-AATTATAATTAAAGTTT---TTAAGCAGTTGCACGAAGTGCATATTGTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................TCTGACTGTCTAATTAAAA...........................................................	19	1	11.00	7.00	1.00	1.00	0.00	2.00
.....................................................................................TCTGACTGTCTAATTAAA............................................................	18	1	6.00	4.00	0.00	0.00	0.00	2.00
......................................................................................CTGACTGTCTAATTAAAA...........................................................	18	1	6.00	3.00	0.00	0.00	3.00	0.00
....................TTC----CAATTAAA--------GTTTCCACT...............................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00

600

scaffold_12932:1249447-1249582 +

46.9

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAA--ACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTA---TGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCT-CTATGAAGGG CG----------------CAGTTGCTGCTACCAATGACAATGAGCCGCACAGAATGCTCATCATGAGCTTGTTGTTGTT-GTTGCCATTTTATGCTTCATTAGGCCAAAAATTATATCGTGGCATCAAAAGCCTCACTGCCAGCCAAGTGACA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................................................ATTAGCTTGTTGGTGTT-GT.......................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

1690

scaffold_12823:1683873-1684014 -

46.7

TAAAAATAAAAAAATGCTCGATT--GCTGCAACTAAGAAACAAATATTTT-CAGT--------TGTTCATTGCAAATTAATTTATGTACATTGCTA-TGAAATCAATTGAAAATATAATTGTATCCTAGGCTTA-TCAGCTGCAATGCCTCTATGAAGGG
TGCAC------AGTTGCCCGAGCAGGCGGCAGTCAA--AACAAACACAGCACAACAAAAATTACACGCATCGCAAAAGTTTTTAGGAGCATCCCGGGCGGGAGAATATAAAAAAATATTTATGCCCCACGCCCATTCAAAAGAAATGTC-----------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

427

scaffold_12928:398996-399145 +

46.5

TAAAAATAAAAAAATGCTCGATT---------------------------------------GCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGT-------------------ACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG---
TCCAAGTAAGCAAGTGCTTGATTTGCATTTTCCAGAAGACTTCCTGCTTTAAGTATTCAAGTGTCTTACTTAAGCAAAAAGTGCTT---------------AAACTAATCAATACATTTGCTTAAAAAACATTTCAATTCATCTTAAATCAATA-------------------------------------------ATGTAGAGACT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

2771

scaffold_12970:9552092-9552228 -

46.33

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAAT------TGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG-------- TACAATTTATTGAATGTGTCAGAGCAGCAACTAAGCTACGAATTGATATATTTATATATATCAAATATATG----------------TACTCCTATCCAGACATAATTTCCGCTGGTTTCTAGCCTTA--------AACACCTCAATCAGGGCCTTTCGAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............................................................................................................................................................CAAG	20	19	0.05	0.00	0.00	0.00	0.05	0.00
............................................................................................................................................................TCGAG	20	2	0.50	0.50	0.00	0.00	0.00	0.00

droMoj3 - 304 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

2815

scaffold_6500:29247639-29247782 -

54.35

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTAT---GAAATCAATTGAAAATATAATTG---TATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GGCCAATTAACAAACGCAC--GTGCAGCAGCTACAACAGCATCGTGTGCACACATACATTC-AAACTTCTTCTGGAACATTCTTTTAATCACATCAGCTGTTAGTTTGGTTTAGTTTTGGTAGATGGCGCTGCAGCACTGAATCTAT------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......TAACAAACGCAC--GTGTAGCAGCTACA......................................................................................................................	26	7	1.71	1.57	0.00	0.00	0.14
..........................................................................................................TGGTTTAGTTTTGGTAGATGGCGC.......................	24	8	0.75	0.00	0.00	0.00	0.75
................................................................................TCTTTGAATCACATCAGCTGTTAGG................................................	25	7	0.71	0.29	0.00	0.00	0.43
..........................................................................................................TCGTTTAGTTTTGGTAGATGGC.........................	22	8	0.50	0.00	0.00	0.00	0.50
.......TAACAAACGCAC--GTGCAGCAGCT.........................................................................................................................	23	8	0.50	0.38	0.13	0.00	0.00
..............CGCAC--GTGCAGCAGCTACAACAGCA................................................................................................................	25	5	0.60	0.20	0.00	0.00	0.40
........................................................................................TCACATCAGCTGTTAGTTTCGTTTAG.......................................	26	8	0.38	0.25	0.00	0.00	0.13
.......TAACAAACGCAC--GTGCAGCAGCTACAA.....................................................................................................................	27	7	0.43	0.29	0.00	0.00	0.14
.............................................................................................................TTTAGTTTTGGTAGATGGCGCTG.....................	23	8	0.38	0.25	0.00	0.00	0.13
.......TAACAAACGCAC--GTGCAGCAGCTACA......................................................................................................................	26	7	0.43	0.43	0.00	0.00	0.00
..........................................................................................................TCGTTTAGTTTTGGTAGATGGCGC.......................	24	7	0.43	0.00	0.14	0.00	0.29
.....................................................................................................TAGTTTCGTTTAGTTTTGGTAGATGG..........................	26	8	0.38	0.38	0.00	0.00	0.00

scaffold_725:291-431 +

52.26

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
ATAAAATAAAATAAAATAAAATAAAATAAAATAA-AATAAAATAAAATAAAATA--AAAT-AAAATAAAATAAAATAAAATAAAATAAAATAAAATAA-AATAAAATAAAATAATAGAATTGCTTACTAAAATA-CTCTATGACGCG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

467

scaffold_6474:63895-64030 +

51.33

TAAAAATAAAAAAAT-------------------GCTCGATTGCTGCAACTA-----------AGAAACAAATAT-------TTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG AAAAAATAATCAAATATTTGGCCAATTAACAAACGCAC--GTGCAGCAGCTACAACTTCTTCTAGAAACATTCGTTGAATCACATCAGTTGTTAGTTTCG-TTTAGTTTTGGTAGATGGC---------------------------------------GCAGCAGCAGTGAATCTAT------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................TAACAAACGCAC--GTGTAGCAGCTACA..................................................................................................................................	26	7	1.71	1.57	0.00	0.00	0.14
.................................................................................................TGG-TTTAGTTTTGGTAGATGGC---------------------------------------GC.......................	24	8	0.75	0.00	0.00	0.00	0.75
.................................................................................................TCG-TTTAGTTTTGGTAGATGGC---------------------------------------.........................	22	8	0.50	0.00	0.00	0.00	0.50
..........................TAACAAACGCAC--GTGCAGCAGCT.....................................................................................................................................	23	8	0.50	0.38	0.13	0.00	0.00
.....................................................................................................TTTAGTTTTGGTAGATGGC---------------------------------------GCTG.....................	23	8	0.38	0.25	0.00	0.00	0.13
............................................................................................TAGTTTCG-TTTAGTTTTGGTAGATGG.................................................................	26	8	0.38	0.38	0.00	0.00	0.00
...............................................................................TCACATCAGCTGTTAGTTTCG-TTTAG..............................................................................	26	8	0.38	0.25	0.00	0.00	0.13
..........................TAACAAACGCAC--GTGCAGCAGCTACAA.................................................................................................................................	27	7	0.43	0.29	0.00	0.00	0.14
.................................................................................................TCG-TTTAGTTTTGGTAGATGGC---------------------------------------GC.......................	24	7	0.43	0.00	0.14	0.00	0.29
..........................TAACAAACGCAC--GTGCAGCAGCTACA..................................................................................................................................	26	7	0.43	0.43	0.00	0.00	0.00

2741

scaffold_6500:21851149-21851291 -

51.21

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAA---TTAATTTATGTACATTGCTATGAAATCAATTGAAAATAT---AATTGTATCCTAGGCT---TATCAGCTGCAATGCCTCTATGAAGGG AAAAAATAAAAAAAAAAC------------CAAACAAATAAATAGAATCAGTCA-GCATTATAAAAGTATAAATAATAAAATATACTTTAAAATGAAATGTAGAAATCCGTTTTGTGTCTTACCCACAAAATAATTTGTCATAAATGCTTGAAATA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...AAAAAAAAAAAAAAC------------CCAACAA.......................................................................................................................	22	8	0.13	0.00	0.00	0.00	0.13

681

scaffold_6498:3093662-3093812 +

51.13

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAA----------------------------------------------------ATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GGCCAATTAACAAACGCACG--TGCAGCAACTACAACAGCATCGTATGCGTGTGCACACATACATTCAAACTTCTTCTAGAAACATTCGTTGAATCACATCAGTTGTTAGTTTCG-TTTAGTTTTGGTAGATGGCGCAGCAG--CAGTGAATGTAT-------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......TAACAAACGCACG--TGTAGCAGCTACA....................................................................................................................................................................	26	7	1.71	1.57	0.00	0.00	0.14
................................................................................................................TGG-TTTAGTTTTGGTAGATGGCGC..............................................................	24	8	0.75	0.00	0.00	0.00	0.75
................................................................................................................TCG-TTTAGTTTTGGTAGATGGC................................................................	22	8	0.50	0.00	0.00	0.00	0.50
.......TAACAAACGCACG--TGCAGCAGCT.......................................................................................................................................................................	23	8	0.50	0.38	0.13	0.00	0.00
..............CGCACG--TGCAGCAGCTACAACAGCA..............................................................................................................................................................	25	5	0.60	0.20	0.00	0.00	0.40
.......TAACAAACGCACG--TGCAGCAGCTACAA...................................................................................................................................................................	27	7	0.43	0.29	0.00	0.00	0.14
.......TAACAAACGCACG--TGCAGCAGCTACA....................................................................................................................................................................	26	7	0.43	0.43	0.00	0.00	0.00
....................................................................................................................TTTAGTTTTGGTAGATGGCGCTG............................................................	23	8	0.38	0.25	0.00	0.00	0.13
................................................................................................................TCG-TTTAGTTTTGGTAGATGGCGC..............................................................	24	7	0.43	0.00	0.14	0.00	0.29
..............................................................................................TCACATCAGCTGTTAGTTTCG-TTTAG..............................................................................	26	8	0.38	0.25	0.00	0.00	0.13
...........................................................................................................TAGTTTCG-TTTAGTTTTGGTAGATGG.................................................................	26	8	0.38	0.38	0.00	0.00	0.00

1440

scaffold_345:1582-1732 -

51.13

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAAT------ATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCT---ATGAAATCAATTGAAAATATAATTGTA---TCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GGCCAATTAACAAACGCACGA--GCAGCAGCTACAACAGCACCGTATGCGTGTGCACACATACATTCAAACTTCTTCTAGAAACATTCGTTGAATCACATCAGCTGTTAGTTTCGTTTAGTTTTGGTAGATGGCGCAGCAGCAGTGAATCTAT------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......TAACAAACGCACGT--GTAGCAGCTACA............................................................................................................................	26	7	1.71	1.57	0.00	0.00	0.14
................................................................................................................TGGTTTAGTTTTGGTAGATGGCGC.......................	24	8	0.75	0.00	0.00	0.00	0.75
......................................................................................TCTTTGAATCACATCAGCTGTTAGG................................................	25	7	0.71	0.29	0.00	0.00	0.43
................................................................................................................TCGTTTAGTTTTGGTAGATGGC.........................	22	8	0.50	0.00	0.00	0.00	0.50
.......TAACAAACGCACGT--GCAGCAGCT...............................................................................................................................	23	8	0.50	0.38	0.13	0.00	0.00
..............CGCACGT--GCAGCAGCTACAACAGCA......................................................................................................................	25	5	0.60	0.20	0.00	0.00	0.40
.......TAACAAACGCACGT--GCAGCAGCTACAA...........................................................................................................................	27	7	0.43	0.29	0.00	0.00	0.14
.......TAACAAACGCACGT--GCAGCAGCTACA............................................................................................................................	26	7	0.43	0.43	0.00	0.00	0.00
...................................................................................................................TTTAGTTTTGGTAGATGGCGCTG.....................	23	8	0.38	0.25	0.00	0.00	0.13
................................................................................................................TCGTTTAGTTTTGGTAGATGGCGC.......................	24	7	0.43	0.00	0.14	0.00	0.29
..............................................................................................TCACATCAGCTGTTAGTTTCGTTTAG.......................................	26	8	0.38	0.25	0.00	0.00	0.13
...........................................................................................................TAGTTTCGTTTAGTTTTGGTAGATGG..........................	26	8	0.38	0.38	0.00	0.00	0.00

396

scaffold_6473:11326421-11326553 +

50.96

TAAAAATAAAAAA----------ATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTT--GTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TACATATAAATAATATTTGATATATGTATAATAAATATAATAAAATCATATTTATTAACTATTGCATTCATAACAAATTATTTTATGTTCATCATAACAAAATTGAT-GTGAA-TTAATTCGATTTTAAGCATAT------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................................................................TGAT-GTGGT-TTAATTCGA....................................	18	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................ATATTGAT-xTGAA-TTAATT.......................................	18	3	0.33	0.00	0.33	0.00	0.00

531

scaffold_6496:7549384-7549535 +

50.72

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAAC--------AAATATTTTCAGTTGTTC---ATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TATAAATAAAGGAATATATTTTAGCCATAATTTAAGAATATTCTAAAAATTGTATTCAACTTATTGAAGTTGAAAATTTGTTTGTTTCCATTTATAAAAAATA---TAAAAATATATATTAGTGCT---TTTATTGTTAATATTGCCTGTATTATTTA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

1487

scaffold_2156:691-829 -

50.36

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATAT-----------TTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GGCCAATTAACAAACGCACG--TGCAGCAGCTACAACAAAAACATTCGTTGAATCACTACAGCTGTTAGTTTCAT-TTAGATTTGGTAGATGGCGCA----GCAACAGTGAATCTATTTGAGTT------TTGC------CAGCGCCACTAGCAGGAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................................TGAATCTATTTGAGTT------TTGC------CAGCGC............	26	4	3.25	1.25	0.00	0.00	2.00
.......TAACAAACGCACG--TGTAGCAGCTACA...........................................................................................................................	26	7	1.71	1.57	0.00	0.00	0.14
............................................................................................................TGAATCTATCTGAGTT------TTGC------CAGCGC............	26	4	1.75	0.25	0.00	0.25	1.25
............................................................................................................TGAATCTATCTGAGTT------TTGC------CAGC..............	24	4	1.00	0.00	0.00	0.00	1.00
.......TAACAAACGCACG--TGCAGCAGCT..............................................................................................................................	23	8	0.50	0.38	0.13	0.00	0.00
............................................................................................................TGAATCTATTTGAGTT------TTGC------CAGCGCCAC.........	29	4	0.75	0.75	0.00	0.00	0.00
.......TAACAAACGCACG--TGCAGCAGCTACAA..........................................................................................................................	27	7	0.43	0.29	0.00	0.00	0.14
............................................................................................................TGAATGTATTTGAGTT------TTGC------CAGCGC............	26	4	0.75	0.50	0.00	0.00	0.25
.......TAACAAACGCACG--TGCAGCAGCTACA...........................................................................................................................	26	7	0.43	0.43	0.00	0.00	0.00
............................................................................................................TGAATCTATTTGAGTT------TTGC------CAGCGCC...........	27	4	0.75	0.25	0.00	0.00	0.50
............................................................................................................TGAATCTATTTGAGTT------TTGC------CAGC..............	24	4	0.75	0.25	0.00	0.00	0.50
......................................................................................................CAGCAGTGAATCTATTTGAGTT------T...........................	23	4	0.75	0.50	0.00	0.00	0.25

2129

scaffold_6473:9813780-9813916 -

50.27

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCT------GCAATGCCTCTATGAAGGG TATAGATGGGAGAGAGGTGA-ATGCTTTGA-----AAGAATATATTTTC--------ATCTTAAAATATAATATTAAATTTATTGTGAAAGTGAATAAGGT--TGATAAAAATCTAAATGCATTAGCTTGATGAATAATGCGTATATGTAGAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................................................AAAGTGAATAAGGT--CGAG..............................................	18	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................AGAAAGTGAATAAGGT--TT................................................	18	1	1.00	1.00	0.00	0.00	0.00
.....ATGAGAGAGAGGTGA-AGG.................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00

3250

scaffold_6654:1171019-1171165 -

50.25

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTC--ATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAAT----------TGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AATAGATTGAAAATTGTAG------AGAAAGTTAGAAGTGTGAATGGACATTTGTTCTAATATCCGATTGATTGATTTACACACTTAGAAAAAA-TATTATAATATAATGCAACATGTATTAGTACTATAATTGCTATTAAAAATGTTTCTATA-----

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

3394

scaffold_6680:20417997-20418150 -

50.1

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAAT---------TAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGT--ATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG GCAAAATAAAACAATACTCA-TTTCTGTTGTTTAGAAATAC---TATTCAAGCATTTGAGTTAAAATAATAAAAGGATTTGCTGGTCCATTTTCGTAATTTCATTGAAAATCATAGTATAAAGCTCATGCTTATATGCTAGTCTGCTCTAGTAACTAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............AATACTAA-TTTGTGTTGTT..............................................................................................................................	19	3	0.67	0.67	0.00	0.00	0.00
............AATACTAA-TTTGTGTTGT...............................................................................................................................	18	3	0.33	0.33	0.00	0.00	0.00

2943

scaffold_6540:7302307-7302462 -

49.96

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGA--AATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCT-GC--------AATGCC--TCTATGAAGGG AGGGATTGTTCATA---TTGATAGTTGTATTTAATAAACAAATTAATGAACTATTATCTTTCAAATTGATATATAAACATTATTATTATTATTTAATTAAAACCATAATTT-TTCCAAGATAACTTATTTTGCATTCATACAAAGTTAGCCCTTGAGGGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
AGGGATTGTTCATA---TTAATAGTTGTA...................................................................................................................................	26	1	1.00	1.00	0.00	0.00	0.00

773

scaffold_6500:9290365-9290509 +

49.67

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGC---AATGCCTCT-------ATGAAGGG TTAAAAATCTGAATAGCGTGAAGACGGCTGTTTAAGCTTAATTTTGTTTCA---TTTAAGGTACATAAATATATATATATTTTTGTTT---------AAAACAAACTTATTTTATAAATTAGTATGTTACTTTATTAGCTCATTTAAATAATTAAAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................TTTAAGCGTAATTTGGTT.............................................................................................................	18	2	1.00	0.50	0.50	0.00	0.00
............................................................................ATATTTTTTTTT---------AAAACCA.....................................................	19	2	0.50	0.00	0.50	0.00	0.00
.........TGAATAGCGTGAAGCCAG..................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
.............................GTTTAAGCGTAATTTGGTT.............................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00

2119

scaffold_6473:9616647-9616794 -

49.63

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTC------------------------AGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAAAATAAAAAAATAAAAAAATGATAATAAAATTAAATATTTATTTAATCGATGATTTTTTTCAAGCCTTGTAGCTCT-------------------TCAAAAACTAAAAAAATAAAATAAAAATAAAAATAAATATTTTGT----TGATTGATAATTTTTTCTCATGCC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................................AAAAAATAAAATAAAAAAA............................................	19	21	0.05	0.00	0.00	0.00	0.05
....................................................................................................................AAAGAAAAATCAAAATAAAT...................................	20	1	1.00	1.00	0.00	0.00	0.00

3369

scaffold_6680:17944028-17944170 -

49.31

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTT---CA------------TTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TAAATTTATTTATTTCTTTTATTTTTTTAATAAATA--TTAATTTTTTAACCCCTTTTCCATTTTACGAAAAATT----TTTAATTAATGTTTATTTT-------------AATAAAATAATTATTTCTTTATGTGTTCAGACTTAAGTTCTTGTTGAATCG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................ATAGTACGAAAAATT----TTT................................................................................	18	1	22.00	0.00	0.00	0.00	22.00
...........ATTTGTTTTATTTTTTGAAT...................................................................................................................................	20	1	2.00	1.00	0.00	1.00	0.00
....................................................................................................................................TGTGTTTAGAGTTAAGTTC...........	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................GTGTTTAGAGTTAAGTTC...........	18	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................................ATGTGTTTAGAGTTAAGTT............	19	1	1.00	0.00	1.00	0.00	0.00
............................................................ATCGTACGAAAAATT----TTT................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

1938

scaffold_6473:1203872-1204020 -

49.27

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTA----------------------ATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TTTACATACATATATGCATAGCTGT--------------CAATATTTCAGCTTGATCATTTGCTTTCAATTGAAATGTCGAGCGAACCAATTTCTTGTTGATTTTTAAAAAGTCTTTTG------TGTTTGTGTTTTAGGCTCGCGTTTGGTAGAGCATCTGGCAAGCG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................................................................................................................CAGTTGGTAGAGCATCTG.......	18	1	6.00	3.00	2.00	1.00	0.00
.................................................................................................................................................GCTTGGTAGAGCACCTGG......	18	1	1.00	1.00	0.00	0.00	0.00

3035

scaffold_6540:17079856-17079995 -

49.23

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACA------AATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCA------------------ATGCCTCTAT-GAAGGG CACAC--------------------------TATTAAACTATATTTTATTTTATAAACAACCCATTTCAAGATTAACTATAA------ATTTAAAGACAAACGAAGAAACATGATTTCACTAGAAATGTCAACAGCATGAAAATCTTAAAGAGCACATTCGCTATGGAAGGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................................................................................................................................AAGGG	19	3	0.33	0.00	0.00	0.00	0.33
.......................................................................................................................................................................AAGGG	20	2	0.50	0.00	0.00	0.50	0.00

2453

scaffold_6496:22389998-22390129 -

49.07

TAAAAATAAAAAAATG---------------------------CTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAA-TCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG TGACAAACGTGAAATGAAAATATTGGCTTAGATTAATAATAATATAGGCTTTTTCTACTCAGAATT---------------------------AAATTATTGTATATTTCTCAGTTTTTCAATTACATTAATAATGTTTTATTATAATTTAAAGCTGCA----------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................ATTAATAATAGTATAGA...............................................................................................................................	17	1	1.00	0.00	1.00	0.00	0.00

744

scaffold_6500:5890082-5890226 +

49.03

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAG---------------------------------------------------------CTGCAATGCCTCTATGAAGGG
TAATAATAAAAATAATAATAATTAATATTAAA-----------------------------------------------------------ATATTGAAAATAATACTTTATTTAATATCAATCAATCTATTTTAAAATGCATTTTTTAAGAAACAAATTTTTAGTGTCACGGAAATAATATTTAAAAATAATTATAATAAAAA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

1939

scaffold_6473:1204904-1205047 -

49.02

TAAAAATAAAAAAATGCTCGATTGCTGC--------AACTAAGAAACAAA-----------------TATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATC------------------------------------------------CTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG CATAACTAATAA---GTTTAATTCTTAACTTTATGAAATTAAAACAAAAAGTTTAGAGCTCAATAATC------------------------------------------------------------------TTTTTCAATTTTATTAGTTTTAACAGTTGTTTCAATTTTTATTTTCTCAGTACTAAATTTAAGAGTTTTAAAATTTTTA-------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................AAATTAAAATGAAAAGTTT......................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

droGri2 - 317 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

576

scaffold_14853:9426729-9426870 +

53.42

TA----AAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATC----AATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCCACAAAGATATCAAAATCTCAGA-TACTG---CTTGAAAGTTGACATTTC-----CCTCATAGAATA-TCCTTTATGTACAGTAATATGAGTGTTTGTATTTGAA-GTCTTCTT-TTTCAT-CGTCATTTATCTCCATCCTCTCTTTGACTGC

Size

Hit Count

Total Norm

V109
Male body

633

scaffold_14906:2823220-2823366 +

52.97

TAAAAA------TAAAAAAATGCTCGATTGCT-------GCAACTAAGAAACAAATATTTTCAGT-----------TGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAACAAATATTCTAACATATTTCTCAATGACTCTAATGCGCATTTAATAAATAAGGATTAGCGATTTTATTTTTATTTCTCGTTGCAAT----------------TTTATGAAATCA------AATATATTTGGCTCTTAATCCCATGA--TATAATCCCCCAGCAGACGG

Size

Hit Count

Total Norm

V109
Male body

1702

scaffold_15246:2667-2806 +

52.09

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAAT-CAATTGAAAATATAATTGTATCCTAGGCTTATCAGCT-GCAA-TGCCTCTATGAAGGG
TTCTAATTTAATTGAAATCTTTAATTTCAA-TATGATTTAATTACTTCTTGTTTTACACTATTTATTAATATATA----ATA--ATGTATTACAAATGA-CATATAATTGTTA--TATTATAATCAGCTCGCAACTGTTGCTTTAGACAT

Size

Hit Count

Total Norm

V109
Male body

2798

scaffold_14906:11087810-11087954 -

51.61

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAAT------TAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCC-------TCTATGAAGGG
TACAATTAAATCTGATGTTGATT-TTGCGATTATGTATTTTGTACTAATAGATTATTATTGATATAAAACACATATTTATGTACATAGTTATGGTAT-------------TCTTGTATTATTGTATTATT-GTAGAAAAGCGCATGCAATTAACGTATTT

Size

Hit Count

Total Norm

V109
Male body

354

scaffold_14853:1534341-1534479 +

50.67

TA---AAAATAAAAAAATGCTCGAT--------TGCTGCAACTAAGAAACAAATA-TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTG-----TATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGCTCAAGTCCATAACATACTTAACATATTTACTTATCCAATTAA-ATACACATGTTCTTTAATCATATTTCTTAAATAAATATGCTTAAAATATAACTAAATCAACTGAATGCATAATTGAAGTGTATATTTGGGTTAT------------------------

Size

Hit Count

Total Norm

V109
Male body

4504

scaffold_15252:15767505-15767649 -

49.4

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAG------------------------------------------------AAACAAATAT-TTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TCAAAAAAATGTAATATAA----TTTGTAACTATAGTGATATTGTTTCTTAATGAAAATTATAAGACTCTGGCTATTTATATACAGAAAATGTTATTCTGTTATTTATTAAATA------------------------------TAATAATACGATTTTATGCACTGTTTCTCAACCGA-----------------

Size

Hit Count

Total Norm

V109
Male body

1855

scaffold_15252:14868970-14869118 +

49.24

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTA-T-----------------------------------------------------------CAGCTGCAATGCCTCTA--TGAAGGG
GTAAAATACAAACATGTTCG----CTGTAAGCAAGCAACCA----------------------------------------------TAAGCAATTAAAAACATAATG----------CTTAATCAAGCACGAAATGCAGCTAAAAATATATATTTCAATGAGTTTTCATTGAGCTTCAATAAACGATGCAATTTCCTTAATTGAAATG

Size

Hit Count

Total Norm

V109
Male body

3867

scaffold_15203:9516168-9516308 -

48.97

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCA----------TTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
T-------------TAATTGATACTTTTAATCA---ATTGAATATTTTTAAAAATCGATATAAAAATAATGAAAGATAATACAAATGCATGAATTTGTACTTAATTAAATATGTGAAAGACATTTAAGTTGATTTATTTAAATAGCTCCCTCAAAGG

Size

Hit Count

Total Norm

V109
Male body

3254

scaffold_15110:6230852-6230993 -

48.97

TAAAAATAAAAAA--------ATGCTCGATTGCTGCAACTAAGAAACAAA------------------------------TATTTTCAGTTGTTCATTGCAAATTAATTTA-TGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GGCAAGCAACCAACAACAAAAATGTAC---------AACAACAAAACTCAAGTTATACATAACATAAACTTTATGCCGGCTTCTGTTAGAATTTTGTTTTAAATTTATTTAAGGTCTGTTGTTTTGGATGCAAGTATAACAAT-----------------------------------TTGAAATG

Size

Hit Count

Total Norm

V109
Male body

2308

scaffold_14830:5739851-5739989 -

48.88

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
CACAAATAAATTAAAAACTTTTTGCAGCAAATAATGAACAAATTAATTAAATTGTTATTTTTTATTAAAT---TGTAATCTGATGATTAATCTAAAAACAATTCAAATAATCTAAAAG-----CGATTAAAGTAATCTAATAATAGT

Size

Hit Count

Total Norm

V109
Male body

3985

scaffold_15203:11752286-11752417 -

48.83

TAAAAATAAAAAA---ATGCTCGATTGCTGCAACTAAGAAA-CAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGC-TTATCAGCTGCAATGCCTCTATGAAGGG
TAAAATTAAATAAATAAAGATCGATTGAAGTGCCGAAAATTGTAAACCCTTACAAATGTCATATGA-------------------AGTAATACATCATATAAAACTAGAATATTCTTCTAGATACTTTTTGCCTCAACTAGTCTCTAAC-TG

Size

Hit Count

Total Norm

V109
Male body

4239

scaffold_15245:17348028-17348183 -

48.52

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCA----AATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATC-------AGCTGCAATGCCTCTATGAAGGG
TAGTACTAGATAATTTGTCCATTAATGCAACTGCAATTTAAACCAATCCCGTTTCTATTATTATTATTATTATTTTA-TTTTATTATTACGCATGACATTTGAAGTGAGACTGAG-CCAAGGCTTATTTATAATATACTGCAATTCAATTCAAATGAA

Size

Hit Count

Total Norm

V109
Male body

801

scaffold_15074:2891449-2891599 +

48.31

TAAAAATAAAAAAA---------TGCTCGATTGCTGCAACTAAGAAACAAATATTT--TCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAAT------CAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TAATTACATAGAACTTTGATTTCTGATCATTTTTTACCAATGAGAAAAAATTAGCCGATACATTTTTTATTTAAATTCAAATTATTCAAATTGTC--TAAATTTGTTGCAACTTAAATGCAAATTCCTTCCTAAGACTATTA-----------TCCATGAAAAA

Size

Hit Count

Total Norm

V109
Male body

scaffold_5123:788-923 +

48.11

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAA------------------ATATTTTCAGTTGTT------CATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TACTAATAAATATAATTATTATTATTGCAA---AGAAACCAAAGTAGAAAAAAGGCAACTTATTTACAACTACTAATATTAATTAATAATTGACTTC------------------TACTTGGGAATATT---ATTTTTTGGGATCATCCGATTCATTGCC-----------

Size

Hit Count

Total Norm

V109
Male body

4266

scaffold_15252:1073492-1073622 -

47.83

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAG--AAACAAATA--TTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAA----------TTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
GAAATCTTAAAAAATAATAAATTAATTACATTATTTTAAACAAATTCGTTTTTAATTGTCGATTTCAACT-----ATTACAAATCGGCCTTAAATAAAAATTAAGTAGTAAACAATAAAATTAGCTTCAAATCTTA-------------------------

Size

Hit Count

Total Norm

V109
Male body

742

scaffold_14906:12030378-12030511 +

47.59

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCAT-TGCAAATTAATT--------------TATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGC---TGCAATGCCTCTATGAAGGG T-------------------------GCAACAAACATGCACATATATTTCGGTATTAAAAAGTAACAAAACTAAAATTTAAATTAAAATTAACAAAATTGGGGATCCTCTCGAAAACAAGAGGGCAACTA------ATTAGTTATCCAAATGCCGCAACAAAAAG	Size	Hit Count	Total Norm	V109 Male body
......................................................................................................................ATAGGGCAACTG------ATTAGTT......................	19	1	4.00	4.00
......................................................................................................................ATAGGGCAACTG------ATTAGT.......................	18	1	1.00	1.00

4291

scaffold_15252:3935680-3935808 -

47.22

TAAAAATAAAAAAATGCTCGATTGCTGCA--------------ACTAAGAAACAAATATTTTCAGTTGTTCA------------TTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAAAAAAAAAAAAT---CCATTTGGAATAGATTGAAGCCGTATATTGAGAGATAATTATTAACA------TATTGGTATTCGGGTATTAAGTCAATTAAAATATCCTATTTCAAAACAAAATAAAATAATAGTAATA------------------------------------

Size

Hit Count

Total Norm

V109
Male body

3432

scaffold_15110:20489101-20489247 -

46.79

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
AAAATATTTTAATCTAGTAGATGAATTTTGATAAAATAGTAGTAGTAGCATTTATCCAGAAAGTTGTATTCTTGTATTTATATGTTTCAATATCTAATAAATATAATTTGAAATTTATCTGTTAAAAAAAAAAACCTAGATAAATGT

Size

Hit Count

Total Norm

V109
Male body

457

scaffold_14853:5165479-5165632 +

46.78

TAAAAATAAAAAAATGCTCGATTGCTGCAAC----TAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATT--GCTATGAA--------ATCAATTGAA-AATATAATTGTA-TCCTAGGCTTATCAGCTGCAATGC-CTCTATGAAGGG
TCGAAATCAGAGACAGCTAAAAACTTGGGTCAACCTGAA---AAAAT-------GTTGTTGATTTCAAATTGTTATTTGTTAGCTAAGATACAAGATAATATTATCAACTGACTAATGTGTTAATGTTGATGGATTTGACAAATCGAATCCGCTTTGCTCAATT

Size

Hit Count

Total Norm

V109
Male body

728

scaffold_14906:11199210-11199354 +

46.75

TAAAAATAAAAAAATGCTCGATTGCTGCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAA--ATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGCAAGTGGCTGGAAAAAAAACTTTTTCACTTCAAAAACAAAAATAGAAAAGG----AAAGCCAAAGAAAGGCAGAACGTTGCCAGCAACGGCAGTGGCAACATCCAATTATTTTTCGATTAGTTTCGCTATCATTCTTCAACAACAAC

Size

Hit Count

Total Norm

V109
Male body

1761

scaffold_15252:7344111-7344246 +

46.58

TAAAAATAAAAAAATGCTCGATTGCT-----------------------------GCAACTAAGAAACAAATATTTTCAGTTGTTCATTGCAAATTAATTTATGTACATTGCTATGAAATCAATTGAAAATATAATTGTATCCTAGGCTTATCAGCTGCAATGCCTCTATGAAGGG
TGCAGATAGAAAAAAGCTAGAGTATTAATTATCTCATAAAAACGTGGCAATTACAAAAATAAAAAAAAAA----------------------------------------CTCATTAAATTAAAAAAAAACTTAAAATATTAATAATTTTAACATTTTCTATGCAACTATTTGTTT

Size

Hit Count

Total Norm

V109
Male body

Generated: 04/20/2012 at 05:54:53 EDT