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View alignment of MAF (12-files) vs LASTZ top hits (20-flies)

View all possible LASTZ hits (20-flies)

dme-mir-4944

chr3R:6338726-6338855 -

Known_mirbase
[View on miRBase] [View on UCSC Genome Browser {Cornell Mirror}]

intron

Legend:

   mature strand at position 6338757-6338778
   star strand at position 6338797-6338818
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF


Species Coordinate Source Confidence Alignment
dm3 chr3R:6338711-6338870 - 1 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------TTCTGCT---------TCTGCCGCTGAGCAAGT-TTTAAATATTACCGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGACTACGTACATAAATATCTT-GGCAAGTGT----------------------TT
droSim1 chr3R:15041591-15041748 + LASTZ 5 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT-C---------TGCT---------CCTGCCGCCTAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droSec1 super_0:15602732-15602889 + LASTZ 5 AGA-TAC-CCAGACAGCAAAAGC-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCT---------CCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG--AAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droYak2 chr3R:10367066-10367225 - LASTZ 5 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------CGCTGCT---------CCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droEre2 scaffold_4770:15270440-15270598 + LASTZ 5 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTGC---------TGCT---------TCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droEug1 scf7180000409692:832659-832824 - LASTZ 5 AGA-TGG-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCTGCTGCTGCTGCTGCTGCC--TCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
droBia1 scf7180000302402:8442381-8442527 - LASTZ 5 AGA-TGG-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------CTCT----------------------CGGAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------GGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
droTak1 scf7180000415380:1278630-1278781 + LASTZ 5 AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTCTTTT-----C---------------------CCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTCCCGCAAATGT----------------------TT
droEle1 scf7180000490995:395638-395791 + LASTZ 5 AGA-TGG-CCAGACGGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCACTTTTTT--------C---------------CCTGCTGCCGAGTAAGT-TTTAAATATTACCGCTTAGTT-------ACAGCTGCAA-A------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTT-GGCAAATGT----------------------TT
droRho1 scf7180000779224:47738-47897 + LASTZ 5 AGA-TGG-CCAGACGGCACAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGT-TCGTTTTTTT--------TTTTGC----------CCTGCTGCCGAGCAAGTTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAAGA------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTT-GGCAAATGT----------------------TT
droFic1 scf7180000453800:2435844-2436003 - LASTZ 5 AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCTC--------CCCGCTGCCAAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AAG-AAAAGTTATAATTATGGCGTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
droKik1 scf7180000302475:1550156-1550292 - LASTZ 5 AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTTT---------------TGGTAATCGAAAAAGTTTCACTTTCTT-------------------------------GCGA-GAACT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------TGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GG-------------------------------
droAna3 scaffold_13340:761260-761417 + LASTZ 5 AGA-TGGCCCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTCGTTTTTTT--C---------------C--A-TCCCGAACAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTTCGG-A------------------------------GAG-GAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GCCAAATGT----------------------TT
droBip1 scf7180000394085:232688-232843 - LASTZ 5 AGA-TGGCCCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTCGT------CT-----TT---------TTTAT-CCCGAACAAGT--TTAAATATTAACGCTTAGTT-------ACAGCTCCAG-A------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
dp4 chr2:7128424-7128589 + LASTZ 5 AGA-TGG--CAGACGGCCCAAGG-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTTTTCG----CT-----TT---------TTTCTCAGTGGCCAAGT-TTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAG-A------------------------------AAGAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------AC
droPer1 super_0:982713-982880 + LASTZ 5 AGA-TGG--CAGACGGCCCAAGG-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTTTTTTTG--CT-----TT---------TTTCTCAGTGGCCAAGT-TTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAG-A------------------------------AATAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------AC
droWil1 scaffold_181108:125373-125548 - LASTZ 5 AGA-TGG-G------GCAAAAGT-ATGTCGACTGAGGAAAACC-GGA--------------------------------------------------------------GAG----------------------CA--AACTT---------------GTAGTAATCGAAAAAGTTTCGGTTTGTT-------------------------------GTAGCCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-AA-----------------------------GAGAAAAAGTTATAATTATGCCGTAAGTACATAAATAACAC-GGCAAATGTGAC--------TT---T-----TT
droVir3 scaffold_13047:1304900-1305088 - LASTZ 5 AGA-A---TAAGAAA------GAAATG-----TTAGGACGGCT-GGA--------------------------------------------------------------CAG----------------------GATTCAGTTTTGTTGCTGCTTACTGCGGTAATCGAAAAAGTTTTGTTG------------------------------------TAGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCTG--------------------------GAA-AAAAGTTATAATTATGGCGTAAGTACATAAATAACGC-TGCAAATGTGCC------GCTTTTCT-----TT
droMoj3 scaffold_6540:5375448-5375637 - LASTZ 5 GGAATAA-TAAGAAA------GAAATG--------------CT-GGA--------------------------------------------------------------GAGGCACAGGCACAGTCTGGCTTGAGATTCAGTT----TGCTGCTTACGGCGGTAATCGAAAAAGTTTTCTGTT----------------------------------GTAGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCTG--------------------------GAA-AAAAGTTATAATTGTGGCGTAAGTACATAAATAACGC-TGCAAATGC------------------------
droGri2 scaffold_14906:4949937-4950239 + LASTZ 5 AGA-A---TAAGAAA------GAAATG-----TAAGCAACGCTCGGACAGATACAGATACAGAGACAGAGCCAGAGACAGAGCCAGAGACGGACACCGAAACTGAAACTGAGGCACA-GCACAG---GACTTGAGATACAGTTTTGTTGCTGC----TGCGGTAATCGAAAAAGTTTGGTTGT------------------------------------AGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCAGAGCTAAGCAGAAAAAAAAAATAAATAAAA-GAAAGTTATAATTATGGCGTAAGTACATAAATAACGC-TGCAAATGTGCCAGAGTGGGGTTGGTAGGAGTT

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species Alignment
dm3 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------TTCTGCT---------TCTGCCGCTGAGCAAGT-TTTAAATATTACCGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGACTACGTACATAAATATCTT-GGCAAGTGT----------------------TT
droSim1 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT-C---------TGCT---------CCTGCCGCCTAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droSec1 AGA-TAC-CCAGACAGCAAAAGC-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCT---------CCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG--AAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droYak2 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------CGCTGCT---------CCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droEre2 AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTGC---------TGCT---------TCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TT
droEug1 AGA-TGG-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCTGCTGCTGCTGCTGCTGCC--TCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
droBia1 AGA-TGG-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------CTCT----------------------CGGAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------GGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
droTak1 AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTCTTTT-----C---------------------CCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTCCCGCAAATGT----------------------TT
droEle1 AGA-TGG-CCAGACGGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCACTTTTTT--------C---------------CCTGCTGCCGAGTAAGT-TTTAAATATTACCGCTTAGTT-------ACAGCTGCAA-A------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTT-GGCAAATGT----------------------TT
droRho1 AGA-TGG-CCAGACGGCACAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGT-TCGTTTTTTT--------TTTTGC----------CCTGCTGCCGAGCAAGTTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAAGA------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTT-GGCAAATGT----------------------TT
droFic1 AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCTC--------CCCGCTGCCAAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AAG-AAAAGTTATAATTATGGCGTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
droKik1 AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTTT---------------TGGTAATCGAAAAAGTTTCACTTTCTT-------------------------------GCGA-GAACT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------TGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GG-------------------------------
droAna3 AGA-TGGCCCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTCGTTTTTTT--C---------------C--A-TCCCGAACAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTTCGG-A------------------------------GAG-GAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GCCAAATGT----------------------TT
droBip1 AGA-TGGCCCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTCGT------CT-----TT---------TTTAT-CCCGAACAAGT--TTAAATATTAACGCTTAGTT-------ACAGCTCCAG-A------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TT
dp4 AGA-TGG--CAGACGGCCCAAGG-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTTTTCG----CT-----TT---------TTTCTCAGTGGCCAAGT-TTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAG-A------------------------------AAGAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------AC
droPer1 AGA-TGG--CAGACGGCCCAAGG-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTTTTTTTG--CT-----TT---------TTTCTCAGTGGCCAAGT-TTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAG-A------------------------------AATAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------AC
droWil1 AGA-TGG-G------GCAAAAGT-ATGTCGACTGAGGAAAACC-GGA--------------------------------------------------------------GAG----------------------CA--AACTT---------------GTAGTAATCGAAAAAGTTTCGGTTTGTT-------------------------------GTAGCCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-AA-----------------------------GAGAAAAAGTTATAATTATGCCGTAAGTACATAAATAACAC-GGCAAATGTGAC--------TT---T-----TT
droVir3 AGA-A---TAAGAAA------GAAATG-----TTAGGACGGCT-GGA--------------------------------------------------------------CAG----------------------GATTCAGTTTTGTTGCTGCTTACTGCGGTAATCGAAAAAGTTTTGTTG------------------------------------TAGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCTG--------------------------GAA-AAAAGTTATAATTATGGCGTAAGTACATAAATAACGC-TGCAAATGTGCC------GCTTTTCT-----TT
droMoj3 GGAATAA-TAAGAAA------GAAATG--------------CT-GGA--------------------------------------------------------------GAGGCACAGGCACAGTCTGGCTTGAGATTCAGTT----TGCTGCTTACGGCGGTAATCGAAAAAGTTTTCTGTT----------------------------------GTAGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCTG--------------------------GAA-AAAAGTTATAATTGTGGCGTAAGTACATAAATAACGC-TGCAAATGC------------------------
droGri2 AGA-A---TAAGAAA------GAAATG-----TAAGCAACGCTCGGACAGATACAGATACAGAGACAGAGCCAGAGACAGAGCCAGAGACGGACACCGAAACTGAAACTGAGGCACA-GCACAG---GACTTGAGATACAGTTTTGTTGCTGC----TGCGGTAATCGAAAAAGTTTGGTTGT------------------------------------AGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCAGAGCTAAGCAGAAAAAAAAAATAAATAAAA-GAAAGTTATAATTATGGCGTAAGTACATAAATAACGC-TGCAAATGTGCCAGAGTGGGGTTGGTAGGAGTT

20-way Secondary Structure

dm3 droSim1 droSec1 droYak2 droEre2 droEug1 droBia1 droTak1 droEle1 droRho1 droFic1 droKik1 droAna3 droBip1 dp4 droPer1 droWil1 droVir3 droMoj3 droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species Alignment
droSim1
AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT-C---------TGCT---------CCTGCCGCCTAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TTSizeHit CountTotal NormV044
Embryo		M023
Head		M024
Male body		M025
Embryo
.................................................................................................................................................................................CACTTTTTT-C---------TGCT---------CCTG...............................................................................................................................................................1811.000.001.000.000.00
.....................................................................................................................................................................................................................................................AGAT-------ACAGCTGCAG-G------------------------------ATG-.......................................................................1811.000.000.001.000.00
droSec1
AGA-TAC-CCAGACAGCAAAAGC-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCT---------CCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG--AAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TTSizeHit CountTotal NormV113
Male body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................TG1890.110.000.000.11
........................................................................................................................................................................................................................................................................................................................................ATAAATAAGTT-AGCAAGT..........................1811.000.001.000.00
droYak2
AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------CGCTGCT---------CCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TTSizeHit CountTotal NormV046
Embryo		V052
Head		V120
Male body		V058
Head		M026
Head
..........................................................................................................................................................................................................................................................................................................................................AAATAACTT-GGCGAGTGA----------------------T.1911.000.000.001.000.000.00
...................................................................................................................................................................................................GCTGCT---------CCAGCCGCCGAGT......................................................................................................................................................1911.000.000.000.001.000.00
droEre2
AGA-TGC-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTGC---------TGCT---------TCTGCCGCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-G------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTT-GGCAAGTGT----------------------TTSizeHit CountTotal NormV040
Embryo		V060
Head		V047
Embryo		V108
Head
..........AGAAGGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------......................................................................................................................................................................................................................1812.000.000.000.002.00
droEug1
AGA-TGG-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCTGCTGCTGCTGCTGCTGCC--TCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TTSizeHit CountTotal Norm
droBia1
AGA-TGG-CCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTT--------CTCT----------------------CGGAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------GGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TTSizeHit CountTotal Norm
droTak1
AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTCTTTT-----C---------------------CCCGAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTCCCGCAAATGT----------------------TTSizeHit CountTotal Norm
droEle1
AGA-TGG-CCAGACGGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCACTTTTTT--------C---------------CCTGCTGCCGAGTAAGT-TTTAAATATTACCGCTTAGTT-------ACAGCTGCAA-A------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTT-GGCAAATGT----------------------TTSizeHit CountTotal Norm
droRho1
AGA-TGG-CCAGACGGCACAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGT-TCGTTTTTTT--------TTTTGC----------CCTGCTGCCGAGCAAGTTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAAGA------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTT-GGCAAATGT----------------------TTSizeHit CountTotal Norm
droFic1
AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TCGTAATCGAAAAAGTTTCGCTTTTTTTC---------TGCTC--------CCCGCTGCCAAGCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------AAG-AAAAGTTATAATTATGGCGTAAGTACATAAATAACTC-GGCAAATGT----------------------TTSizeHit CountTotal Norm
droKik1
AGA-TGG-CCAGACAGCAGAAGT-------------------------------------------------------------------------------------------------------------------AACTTT---------------TGGTAATCGAAAAAGTTTCACTTTCTT-------------------------------GCGA-GAACT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-A------------------------------TGG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GG-------------------------------SizeHit CountTotal Norm
droAna3
AGA-TGGCCCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTCGTTTTTTT--C---------------C--A-TCCCGAACAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTTCGG-A------------------------------GAG-GAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GCCAAATGT----------------------TTSizeHit CountTotal NormV105
Male body		V106
Head		V055
Unknown		V039
Embryo
.......................................................................................................................................................................GAAAAAGCTTCGCTTTCTT...........................................................................................................................................................................................1911.000.000.000.001.00
.....................................................................................................................................................................................TTCGTTTTTAT--C---------------C--A-TGCC..........................................................................................................................................................1811.000.000.000.001.00
droBip1
AGA-TGGCCCAGACAGCAAAAGT-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTCGT------CT-----TT---------TTTAT-CCCGAACAAGT--TTAAATATTAACGCTTAGTT-------ACAGCTCCAG-A------------------------------AAG-AAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------TTSizeHit CountTotal Norm
dp4
AGA-TGG--CAGACGGCCCAAGG-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTTTTCG----CT-----TT---------TTTCTCAGTGGCCAAGT-TTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAG-A------------------------------AAGAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------ACSizeHit CountTotal NormV112
Male body		V043
Embryo		V051
Head		M022
Male body
....................................................................................................................................................................................................................................................................................................................................................................................G2443.253.250.000.000.00
....................................................................................................................................................................................................................................................................................................................................................................................G2350.600.600.000.000.00
droPer1
AGA-TGG--CAGACGGCCCAAGG-------------------------------------------------------------------------------------------------------------------AACTT----------------TGGTAATCGAAAAAGTTTCGCTTTTTTTTTG--CT-----TT---------TTTCTCAGTGGCCAAGT-TTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAG-A------------------------------AATAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTC-GGCAAATGT----------------------ACSizeHit CountTotal NormV111
Male body		V042
Embryo		V050
Head		V057
Head		M021
Embryo
droWil1
AGA-TGG-G------GCAAAAGT-ATGTCGACTGAGGAAAACC-GGA--------------------------------------------------------------GAG----------------------CA--AACTT---------------GTAGTAATCGAAAAAGTTTCGGTTTGTT-------------------------------GTAGCCAAGT-TTTAAATATTAACGCTTAGTT-------ACAGCTGCAG-AA-----------------------------GAGAAAAAGTTATAATTATGCCGTAAGTACATAAATAACAC-GGCAAATGTGAC--------TT---T-----TTSizeHit CountTotal NormV117
Male body		V118
Embryo		V119
Head		M020
Head
.....................TT-ATGTCGGCTGAGGAAA.............................................................................................................................................................................................................................................................................................................................................1812.000.000.000.002.00
......................T-ATGTCGGCTGAGGAAAG............................................................................................................................................................................................................................................................................................................................................1812.000.000.000.002.00
...................................................................................................................................................................................................................................................TTAGTG-------ACTGCTGCAG-AA-----------------------------GA.........................................................................2011.000.001.000.000.00
........................................................................................................................................................................................................................................................G-------AAAGCTGCAG-AA-----------------------------GAGAA......................................................................1811.000.001.000.000.00
droVir3
AGA-A---TAAGAAA------GAAATG-----TTAGGACGGCT-GGA--------------------------------------------------------------CAG----------------------GATTCAGTTTTGTTGCTGCTTACTGCGGTAATCGAAAAAGTTTTGTTG------------------------------------TAGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCTG--------------------------GAA-AAAAGTTATAATTATGGCGTAAGTACATAAATAACGC-TGCAAATGTGCC------GCTTTTCT-----TTSizeHit CountTotal NormV116
Male body		V053
Unknown		V047
Embryo		M027
Male body		M028
Head
..............................................................................................................................................................................................................................................................................................................................................................CC------GGTTTTCG-----TT1820.500.000.500.000.000.00
......................................................................................................................................................................................................................................................................GCAC-AGCTG--------------------------GAC-AAAAGT.................................................................1811.000.000.000.001.000.00
.........................................................................................................................................................................................................................................ATATTAATGCTTGCTT-------AC...................................................................................................................1811.000.000.001.000.000.00
.........................................CT-GGA--------------------------------------------------------------CAG----------------------GATTGAGTTATG...................................................................................................................................................................................................................................2011.001.000.000.000.000.00
droMoj3
GGAATAA-TAAGAAA------GAAATG--------------CT-GGA--------------------------------------------------------------GAGGCACAGGCACAGTCTGGCTTGAGATTCAGTT----TGCTGCTTACGGCGGTAATCGAAAAAGTTTTCTGTT----------------------------------GTAGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCTG--------------------------GAA-AAAAGTTATAATTGTGGCGTAAGTACATAAATAACGC-TGCAAATGC------------------------SizeHit CountTotal NormV110
Male body		V056
Unknown		V049
Head		V041
Embryo
...............................................................................................................................................................................................................................................................................................................AAAGTTATAATCGGGGCG....................................................1812.002.000.000.000.00
droGri2
AGA-A---TAAGAAA------GAAATG-----TAAGCAACGCTCGGACAGATACAGATACAGAGACAGAGCCAGAGACAGAGCCAGAGACGGACACCGAAACTGAAACTGAGGCACA-GCACAG---GACTTGAGATACAGTTTTGTTGCTGC----TGCGGTAATCGAAAAAGTTTGGTTGT------------------------------------AGCCAAGT-TTTAAATATTAACGCTTACTT-------ACAGCTGCAG-AGCAGAGCTAAGCAGAAAAAAAAAATAAATAAAA-GAAAGTTATAATTATGGCGTAAGTACATAAATAACGC-TGCAAATGTGCCAGAGTGGGGTTGGTAGGAGTTSizeHit CountTotal NormV109
Male body
...................................................................GAGTCAGAGACAGAGCCAA...............................................................................................................................................................................................................................................................................................1912.002.00
..........................................................ACAGAGACAGAGTCAGAAACA......................................................................................................................................................................................................................................................................................................2140.250.25
.........................................................................................................................................................................AAAAGTTTGGTTGG------------------------------------ATCC......................................................................................................................................................1811.001.00

Generated: 04/20/2012 at 05:22:49 EDT