Possible Orthologs for dme-mir-4943

droSim1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
6	chr2L_random:601476-601603 -	71.08	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATTT---------ATT--------TTTGAATGACCAATTTTGGCTTT---CTTCTCTGTCGTTTCAGTTAATGAAAAGTAGTAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..............................................................................................AAATGAAAGATAATGAGACC.................................. 20 1 1.00 0.00 0.00 0.00 1.00 ............................................................................................................GAGACCCAGTCGACAGGACCCAAG................ 24 1 1.00 0.00 0.00 0.00 1.00 ATTT---------ATT--------TTTTATTGACCA................................................................................................................ 19 2 0.50 0.50 0.00 0.00 0.00 ...........................................................................................................TGAGACCCAGTCGACAGGACCC................... 22 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................................GAGACCCAGTCGACAGGACC.................... 20 1 1.00 0.00 0.00 0.00 1.00
5	chrX:15823769-15823929 +	47.22	ATTTTAA------ACAACTATTTCG--GATCGTTTGAATGA---CCAATTTTGTCTTTTATTTTCTCTGTGTTTTC-----AGTTAATGAAA-GATAGTGAACACAGTGCTAAAT-GAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATTTTTTCATAGCACTGCTATTTTAGTGAACACCTGAATTTCTGCCTATTATGTTGT---TTTAATCTATATTTTCGAAACTGTTGAAGAAATAAAAGTGAAACATTTGCTAAATTGTTTGAAATTAAATACCTAACGATATTAT--AAAAAAAATTTGACCATTA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ......................................................................................ACGAATTAAAAGTGAAAC.............................................................. 18 2 4.00 0.00 0.50 1.50 2.00 .....................TTTAGTGAACACCTGAATTTCTGCC........................................................................................................................ 25 1 3.00 0.00 0.00 0.00 3.00 ..........................TGAACACCTGAATTTCTGCCC....................................................................................................................... 21 1 2.00 0.00 1.00 0.00 1.00 ..................TATTTTAGTGAACACCTGAATTTCTGCC........................................................................................................................ 28 1 2.00 0.00 0.00 0.00 2.00 ..........................TGAACACCTGAATTTCTGCCT....................................................................................................................... 21 1 2.00 0.00 2.00 0.00 0.00 ..................................................................................................................................................................ATTT 18 2 1.00 0.00 0.00 0.50 0.50 ................................................................ATCTATATTTTCGAAACTGTTGAA.............................................................................. 24 1 1.00 0.00 0.00 0.00 1.00 .....................TTTAGTGAACACCTGAATTTCTGCCCA...................................................................................................................... 27 1 1.00 0.00 0.00 0.00 1.00 ...........................................................................CGAAACTCTTGAAAAAAT......................................................................... 18 1 1.00 0.00 1.00 0.00 0.00 .....................TTTAGTGAACACCTGAATTTCTGCCT....................................................................................................................... 26 1 1.00 0.00 0.00 0.00 1.00 ...................................................................TATATTTTCGAAACTGTTGAAGAAAT......................................................................... 26 1 1.00 0.00 0.00 0.00 1.00 ....................TTTTTGTGAACACCTGAATTTCTGCCC....................................................................................................................... 27 1 1.00 0.00 0.00 0.00 1.00 .......................TAGTGAACACCTGAATTTCTGCCG....................................................................................................................... 24 1 1.00 0.00 0.00 0.00 1.00 ..............................................................TAATCTATATTTTCGAAACTA................................................................................... 21 1 1.00 0.00 0.00 0.00 1.00 .....................TTTAGTGAACACCTGAATTTCTGCCC....................................................................................................................... 26 1 1.00 0.00 0.00 0.00 1.00 ...............................................................................................................................................AT--AACAAAAATTTGACTA... 18 1 1.00 0.00 0.00 1.00 0.00 .......................TAGTGAACACCTGAATTTCTGCC........................................................................................................................ 23 1 1.00 0.00 0.00 0.00 1.00 ........................................................................................................ATTTGTTAAATTGTTTGAAATT........................................ 22 2 0.50 0.00 0.00 0.50 0.00
1	chr3R:9346254-9346381 +	41.11	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACAC----------------AGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG G----------ATGATTCGGAT-----------TCGGGTTTAAATTTTAATTTAGCGGTGTTTTTGTTCAATAATTCATAGTAAATATTTGGGGTATTTGGTGTTGTAGTAGTTGATGAATAATGGAGT------------AACAGAGAGCAAGATAT---TTA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo G----------ATGATTCGGAT-----------TTGGGA............................................................................................................................. 18 1 1.00 0.00 0.00 0.00 1.00

droSec1 - 6 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
6	super_7:174891-175018 -	71.68	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATTT---------ATT--------TTTGAATGACCAATTTTGTCTTT---CTTCTCTTTCTTTTCAGTTAATGAAAAGTAGTAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .......................................................................................................................GACAGGACCCAAGAAGACGATGTTGA... 26 1 1.00 1.00 0.00 0.00 .................................................................................................................................ACGAAGACGATGTTGATGG 19 1 1.00 0.00 1.00 0.00 ............................................................................................................................GAxCTAAGAAGACGATGTT..... 18 1 1.00 0.00 1.00 0.00 ............................................................................AGTAGTAAACACAGTGCTAAATGAAAG............................................. 27 1 1.00 0.00 0.00 1.00 .................................................................CGTTAATGAAAAGTAGTAAACACAGT......................................................... 26 1 1.00 1.00 0.00 0.00 ...........................................................................................................TGAGACCCAGTCGACAGGA...................... 19 1 1.00 0.00 1.00 0.00
5	super_2003:361-437 +	27.63	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAG-TGCTAAATGAAA--GATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG T-------------------------------------------------------------------TGAGAAAAAGTAGTTGGCACATTTGGTAAATGGCCATGGGAATGGGC---GGCCA----TCGGGATGGAGGTGCTGCTAAGAA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..................................................................................................TGGCCAAGGGAACGGGC---G................................ 18 5 0.20 0.00 0.20 0.00 .....................................................................GATAAAAAGTTGTTGGCA................................................................ 18 5 0.20 0.00 0.00 0.20 .........................................................................................................................CA----TCGGGxTGGCGGTGCTG....... 18 5 0.20 0.00 0.20 0.00
2	super_0:14870866-14870942 +	27.63	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAG-TGCTAAATGAAA--GATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG T-------------------------------------------------------------------TGAGAAAAAGTAGTTGGCACATTTGGTAAATGGCCATGGGAATGGGC---GGCCA----TCGGGATGGAGGTGCTGCTAAGAA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..................................................................................................TGGCCAAGGGAACGGGC---G................................ 18 5 0.20 0.00 0.20 0.00 .....................................................................GATAAAAAGTTGTTGGCA................................................................ 18 5 0.20 0.00 0.00 0.20 .........................................................................................................................CA----TCGGGxTGGCGGTGCTG....... 18 5 0.20 0.00 0.20 0.00
1	super_0:14865955-14866031 +	27.63	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAG-TGCTAAATGAAA--GATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG T-------------------------------------------------------------------TGAGAAAAAGTAGTTGGCACATTTGGTAAATGGCCATGGGAATGGGC---GGCCA----TCGGGATGGAGGTGCTGCTAAGAA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..................................................................................................TGGCCAAGGGAACGGGC---G................................ 18 5 0.20 0.00 0.20 0.00 .....................................................................GATAAAAAGTTGTTGGCA................................................................ 18 5 0.20 0.00 0.00 0.20 .........................................................................................................................CA----TCGGGxTGGCGGTGCTG....... 18 5 0.20 0.00 0.20 0.00
4	super_1259:3045-3121 +	27.63	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAG-TGCTAAATGAAA--GATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG T-------------------------------------------------------------------TGAGAAAAAGTAGTTGGCACATTTGGTAAATGGCCATGGGAATGGGC---GGCCA----TCGGGATGGAGGTGCTGCTAAGAA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..................................................................................................TGGCCAAGGGAACGGGC---G................................ 18 5 0.20 0.00 0.20 0.00 .....................................................................GATAAAAAGTTGTTGGCA................................................................ 18 5 0.20 0.00 0.00 0.20 .........................................................................................................................CA----TCGGGxTGGCGGTGCTG....... 18 5 0.20 0.00 0.20 0.00
3	super_1259:1461-1537 +	27.63	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAG-TGCTAAATGAAA--GATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG T-------------------------------------------------------------------TGAGAAAAAGTAGTTGGCACATTTGGTAAATGGCCATGGGAATGGGC---GGCCA----TCGGGATGGAGGTGCTGCTAAGAA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..................................................................................................TGGCCAAGGGAACGGGC---G................................ 18 5 0.20 0.00 0.20 0.00 .....................................................................GATAAAAAGTTGTTGGCA................................................................ 18 5 0.20 0.00 0.00 0.20 .........................................................................................................................CA----TCGGGxTGGCGGTGCTG....... 18 5 0.20 0.00 0.20 0.00

droYak2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:4574442-4574584 +	80.74	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATTTTATAAAACTATGGGGGATACTTAG-ATAATTAATTTTGTCATT---GTTCTTTGTCT-TTCAGTTAATGAAAAGTAGTAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .............................................................................................................................ACCCAAGAAGACGATGTTG.... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ..........................................................TAT-TTGAGTTAATGAAAAG...................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 0.00 ...........................................................................................................................GGACCCAAGAAGACGATGT...... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................................................................................................GACAGGACCCAAGAAGACGATGTTGA... 26 1 1.00 0.00 0.00 1.00 0.00 0.00 ......................................................................................................................CGACAGGACCCAAGAAGACGATGTTG.... 26 1 1.00 0.00 0.00 1.00 0.00 0.00 ............................................................................................................GAGACGCAGTCGACAGGACC.................... 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ...........................................................................................................TGAGACGCAGTCGACAGGACCC................... 22 1 1.00 0.00 0.00 1.00 0.00 0.00
2	chr3L:3644296-3644355 +	19.18	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG T--------------------------------------------------------------------------GGGTGAAAAATGCTGAAATATATGCGAAAAAAAATGGTTCAAGTGATGGCAGCTGACAG-------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ........................................................................................................AAAAATGATCCAAGTGAT.......................... 18 1 1.00 0.00 1.00 0.00 0.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_4845:19592406-19592554 -	79.57	ATTTTAAACAACTATTTC--GGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGT---TTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATTTTATGCAACTATTGTGTGTATC-TTTAAATGACTAATTTTGTCATT---CTTCTCTGTTTTTTTTTCAGTTAATGAATAGTAGCAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ...............................................................................ATAGTAGCAAACACAGTGCT...................................................... 20 1 1.00 1.00 0.00 0.00 0.00 ..........................TTTAAATGACxAACTTTGT............................................................................................................ 18 1 1.00 0.00 0.00 0.00 1.00 .................................................................................................................................GAxCTAAGAAGACGATGTT..... 18 1 1.00 0.00 0.00 0.00 1.00 ..................................................................................................................................ACCCAAGAAGACGATGTTT.... 19 1 1.00 1.00 0.00 0.00 0.00

droFic1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	scf7180000454078:456928-457118 -	44.46	ATTTTAAACAACTATTTCGGATCGTTTGAATG-ACCAATTTTGTCTTTTATTT-----------------------------------------------TCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG AATATAA-----TAAATGTGACCATTAAAAAGTACCACTTATGTCTTTAAATTGATATTAAATATTTTTGACAAAACTATAACTACAATATACTATCTCGTTTATCTCTTTTTAGTAAATGAAAAGTAATATACAAAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCTAAGAAGACGATGTTGATTG Size Hit Count Total Norm
1	scf7180000454045:623947-624045 +	38.4	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATA-GTGAACACAG-TGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATT------------------------------------TTGTTTTTCTTTTCATCTG--GTTTTTGTTAAA---AAATATACATACACAGACACGAAAAAAAATTCCATGAGGAAAAGCTGATAGATCTCGAA----------TGATCG Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	scf7180000408961:97346-97507 -	65.09	ATTTTAAACAACTATTTCGGATCGTTTGAATGAC----CAATTTTGTCTTTTATTTTCTCTGTGT----------TTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATATCTAAAAATGACTAAGATTCTCTTCAACAACATGACAAATTAACTTATAATCTTCTCTTTGCTTGTTTTTCTTTTTAGTAAATGAAAAATAGTAAACAAAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000301468:656432-656584 -	69.9	ATTTTAAACAACTATTTCGGATCGTTT----------------GAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG TGTGAAAGTAGTTAGTT---ATAGTTTAAAATATGGAGATATTAAATGA-------AATCCCTTACTTTCT-TATCGTTTCAGTTGATGAAAAGTAGTGAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	scf7180000415914:214815-214954 -	71.92	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ACTCTAC----CTAT-AAAAAGTGTCAAATTGACTAAT--CGTCTTGTTCTTTCT-TATCATTTTAGTAAATGAAAAGTAGTAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm

droEle1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000490579:831701-831934 +	30.66	ATTTT------AAACAACTATT-------------------------------------------------------------------------------------------------------TCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATGTTGCTTCTATAAAACTATTAAAAAATAATTAAAATCTGAAGTTCCCGAAAAGTGTTTATTAACACTTTTATATTAATTAGTTAAATACAAACTAAGTTTATTTCATGAAAGGTGACAATTTTTCAAATC---------TCC-------------AT-TTTCCTTTCTTTTTAGTAAATGAAAAGTAATAGACAAAGAGCTAAATGATAGAGAATGAGACCCAGTCAACAGGACCCAAAAAGACAATGTTGATTG Size Hit Count Total Norm
4	scf7180000491249:1701110-1701173 +	22.2	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG A-----------------------------------------------------------------------ATGAAATAGCACACACACTCGTGCACGGAAAATTCTATGCCAAAA--ACGAGGACCACAGAAAAA----------- Size Hit Count Total Norm
3	scf7180000491249:1700711-1700745 +	15.07	ATTTTAAACAAC--TATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG CTTTTGAAGAACGTTATGTTAAAACATTTTAAAGA------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000780143:38260-38494 -	30.14	ATTTTAAACAACTA-----------------------------------------------TTTCGGATCGTTTGAATGAC------------------------------------------------CAATTTTGTCTTTTATTTTCTCTG----TGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATTTTCCAAAACAAAGTTCGTTTTTAAATCTTAAAAATTATTATAAGATATCTTTTAAAATTTTCAAATCAAATAAACGATCTGATGGCTCCATAAAAGGTGCAAAATTGAAAAATATTTTTTCTAATCCCCTGTT------------TTCTGTTTTTCTTTTTAGTAAATGAAAAGTAATTCACCAAGTGCTAAATGATAGAGAATGAGACCCAGTCGACAGGACCCAAAAAGACAATGTTGATTG Size Hit Count Total Norm

droKik1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	scf7180000302382:320881-321046 -	59.34	ATTTTAAACAACTATTTCGGATCGTTTGAAT-------GACCAATTTTGTCTTTTAT-----------TTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG CTTCTTGATAATTGCTGGGAAATTTTTAAATTTTGTTTAACTAAATTTATTACTTATTCCTTAATTTTTTTCTTATTTTTTACAGTAAATGAAAAGTAGTACACGCAGTGCTCAATGAATGAGAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG Size Hit Count Total Norm
6	scf7180000302344:309284-309327 -	17.81	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTG-ATTG AC---------------------------------------------------------------------------------------------------------TGAAAATAAGCCGATAGAGCTCAGCGCGAAGATGGTGCACTG Size Hit Count Total Norm

droAna3 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_12916:16031637-16031788 +	66.55	ATTT---------TAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGA--TAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATGTTTAAATGATTAAAAAATTATGTTCAAC-----TAATTATTAATT-TATATTTTATTGTCTTCC-CATTACAGTTAATGAAAAAGTAATTTAAAAAATCGCTAAATGAAAGAGAATGAGACCCAGTCGACATTTCCCAAGAAGACCATGTTGATTG Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ........................................................................................................TAAAAGAAAGAGAAAGAGA.................................... 19 1 1.00 1.00 0.00 0.00 0.00 ...........................................................................................................ATGCAAGAGAATGTGAC................................... 17 1 1.00 0.00 0.00 1.00 0.00 ..................................................................................................................AGAATGAGACCCAGTCGACATT....................... 22 1 1.00 0.00 1.00 0.00 0.00 ....................................................ATTTTATTGTCTTTA-CAT........................................................................................ 18 1 1.00 0.00 0.00 1.00 0.00 ................................................................................................AAAATxGCTAAAAGAAAGA............................................ 18 2 0.50 0.00 0.00 0.00 0.50 ..................................................................................................................................GACATTTCCCAAGAAGACC.......... 19 1 1.00 0.00 0.00 0.00 1.00 .................................................................................................................GAGAATGAGACCCAGTCGAC.......................... 20 1 1.00 1.00 0.00 0.00 0.00
1	scaffold_12916:16031018-16031027 +	4.11	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG TTAGTAAAAA------------------------------------------------------------------------------------------------------------------------------------------ Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo	None	None

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000396717:268070-268207 +	69.61	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTT------TATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATTTTAAA------------ATATTTTTAATTTAAAATTAATTATTTTTTTATCATTTTCTCA----TTACAGTTGATGAAAAGTAGTTATAAAATCGCTAAATGAAAGAGAATGAGACCCAGTCGACATTTCCCAAGAAGACCATGTTGATTG Size Hit Count Total Norm

dp4 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr4_group3:8251613-8251715 -	50.0	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG TTTGT-----------------------------------------TCCTTTTCTC----TTTACAGTTATTTGCCAAGCAGAAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAACAGAAGACGATGTTGATTG Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ......................................................................................................................CGACAGACGAACAGAAGACGAT........ 22 1 1.00 1.00 0.00 0.00 0.00 ....................................................................................................................GACGACxGACGAACAGAAGA............ 19 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................................GAGACACAGTCGACAGAC...................... 18 1 1.00 0.00 1.00 0.00 0.00
6	Unknown_group_170:12581-12707 -	39.7	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGT---TAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATA-ATGAGACCCAGTC-GACAGGAC-CCAAGAAGACGATGTTGATTG ATTTTGG-AGATGATTTCAGATTTTTTA------------TTTATTTCGCTGACTATATATTTTCATAACTTG----------GTTGTTGTTGTATTAAAACACTGACATATAGAAC-TAATTTGA-G--ACAAAAAATGGGAGCTGTAAAATA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body .........................................................................................................................TTTGA-G--ACAAAAAATGGGAGC......... 21 1 40.00 36.00 2.00 1.00 1.00 ............................................................................................................................GA-G--ACAAAAAATGGGAGCTGT...... 21 1 37.00 37.00 0.00 0.00 0.00 .......................................................................................................................AATTTGA-G--ACAAAAAATGGGA........... 21 1 23.00 23.00 0.00 0.00 0.00 ..........................................................................................................................TTGA-G--ACAAAAAATGGGAGCT........ 21 1 21.00 20.00 0.00 1.00 0.00 ........................................................................................................................ATTTGA-G--ACAAAAAATGGGAG.......... 21 1 17.00 15.00 0.00 2.00 0.00 ...................................................................................................................................CAAAAAATGGGAGCTGTAAAA.. 21 1 15.00 15.00 0.00 0.00 0.00 .............................................................................................................................A-G--ACAAAAAATGGGAGCTGTA..... 21 1 12.00 11.00 1.00 0.00 0.00 ..............................................................TTCATAACTTG----------GTTGTTGTTG............................................................. 21 1 8.00 7.00 0.00 1.00 0.00 ...................................................................................................................................CAAAAAATGGGAGCTGTAAA... 20 1 8.00 8.00 0.00 0.00 0.00 .................................................................ATAACTTG----------GTTGTTGTTGTA........................................................... 20 1 7.00 5.00 0.00 2.00 0.00 ...............................................................................................................................G--ACAAAAAATGGGAGCTGTAA.... 21 1 7.00 6.00 0.00 1.00 0.00 .....................................................................CTTG----------GTTGTTGTTGTATTAAA...................................................... 21 1 6.00 6.00 0.00 0.00 0.00 ....................................................................................................................................AAAAAATGGGAGCTGTAAAAT. 21 1 6.00 6.00 0.00 0.00 0.00 ...........................................................................................................................TGA-G--ACAAAAAATGGGAGCT........ 20 1 6.00 6.00 0.00 0.00 0.00 ..................................................................TAACTTG----------GTTGTTGTTGTATT......................................................... 21 1 6.00 6.00 0.00 0.00 0.00 .......................TTTTA------------ATTATTTCGCTGACTA.................................................................................................. 21 1 5.00 4.00 1.00 0.00 0.00 .........................................................ATATTTTCATAACTTG----------GTTGT.................................................................. 21 1 5.00 1.00 0.00 3.00 1.00 ..................................................................................................AAACACTGACATATAGAAC-TA.................................. 21 1 5.00 3.00 0.00 1.00 1.00 ...........................................................................................................................TGA-G--ACAAAAAATGGGAGCTG....... 21 1 5.00 3.00 0.00 2.00 0.00 ......................................................................................................................................AAAATGGGAGCTGTAAAATA 20 1 5.00 5.00 0.00 0.00 0.00 .........................................................................................................................TTTGA-G--ACAAAGAATGGGAGC......... 21 1 4.00 4.00 0.00 0.00 0.00 .......................................................................TG----------GTTGTTGTTGTATTAAAAC.................................................... 21 1 4.00 4.00 0.00 0.00 0.00 ...............................................................TCATAACTTG----------GTTGTTGTTGT............................................................ 21 1 4.00 1.00 0.00 3.00 0.00 ...............................................................................................................................G--ACAAAAAATGGGAGCTGTA..... 20 1 4.00 2.00 0.00 2.00 0.00 ....................ATTTTTTA------------ATTATTTCGCTGA..................................................................................................... 21 1 4.00 4.00 0.00 0.00 0.00 ....................................................................ACTTG----------GTTGTTGTTGTATTAA....................................................... 21 1 4.00 4.00 0.00 0.00 0.00 .................................................................ATAACTTG----------GTTGTTGTTGTAT.......................................................... 21 1 4.00 4.00 0.00 0.00 0.00 ...........................................................ATTTTCATAACTTG----------GTTGTTG................................................................ 21 1 4.00 2.00 0.00 0.00 2.00 .......................................................................TG----------GTTGTTGTTGTATTAAA...................................................... 19 1 3.00 3.00 0.00 0.00 0.00 .......................................................................TG----------GTTGTTGTTGTATTAAAGC.................................................... 21 1 3.00 3.00 0.00 0.00 0.00 ............................................................................................................................GA-G--ACAAAAAATGGGAGCTG....... 20 1 3.00 2.00 0.00 1.00 0.00 .....................................................................CTTG----------GTTGTTGTTGTATTAA....................................................... 20 1 3.00 3.00 0.00 0.00 0.00 ........................................................TATATTTTCATAACTTG----------GTTG................................................................... 21 1 3.00 1.00 0.00 1.00 1.00 .......................................................................................................................AGTTTGA-G--ACAAAAAATGGGA........... 21 1 3.00 3.00 0.00 0.00 0.00 .......................................................................................................................GATTTGA-G--ACAAAAAATGGGA........... 21 1 3.00 3.00 0.00 0.00 0.00 ...............................................................TCATAGCTTG----------GTTGTTGTTG............................................................. 20 1 3.00 2.00 0.00 1.00 0.00 ....................................................................................................................................AAAAAATGGGAGCTGTAAA... 19 1 3.00 3.00 0.00 0.00 0.00 ....................................................................................................................................AAAAAATGGGAGCTGTAAAA.. 20 1 3.00 3.00 0.00 0.00 0.00 .....................................................................................................................................AAAAATGGGAGCTGTAAAATA 21 1 3.00 3.00 0.00 0.00 0.00 .............................................................TTTCATAACTTG----------GTTGTTGTT.............................................................. 21 1 3.00 2.00 0.00 1.00 0.00 ......................TTTTTA------------ATTATTTCGCTGACT................................................................................................... 21 1 3.00 2.00 0.00 0.00 1.00 ............................................................TTTTCATAACTTG----------GTTGTTGT............................................................... 21 1 3.00 1.00 0.00 2.00 0.00 ..........................................................................................................................TTGA-G--ACAAAGGATGGGAGCT........ 21 1 3.00 2.00 0.00 1.00 0.00

droPer1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_1:9700572-9700674 -	49.32	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG TTTGT-----------------------------------------TCCTTTTCTC----TTCACAGTTATTTGCCAAGCAGAAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAACAGAAGACGATGTTGATTG Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ............................................................................................................GAGACACAGTCGACAGACGA.................... 20 1 3.00 0.00 0.00 0.00 0.00 3.00 ................................................................................................................................ACAGAAGATGATGTTGAGT. 19 1 2.00 2.00 0.00 0.00 0.00 0.00 ......................................................................................AAAGTGCTAAATGAAAGAGAAT........................................ 22 1 1.00 1.00 0.00 0.00 0.00 0.00 .................................................................................................................................CAGATGGCGATGTTGATT. 18 1 1.00 0.00 1.00 0.00 0.00 0.00
3	super_42:426787-426913 -	39.7	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGT---TAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATA-ATGAGACCCAGTC-GACAGGAC-CCAAGAAGACGATGTTGATTG ATTTTGG-AGATGATTTCAGATTTTTTA------------TTTATTTCGCTGACTATATATTTTCATAACTTG----------GTTGTTGTTGTATTAAAACACTGACATATAGAAC-TAATTTGA-G--ACAAAAAATGGGAGCTGTAAAATA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo .........................TTT------------TTTATTGCGCTGACT................................................................................................... 18 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................TTTTA------------ATTATTTCGCTGACT................................................................................................... 20 1 3.00 0.00 0.00 0.00 0.00 3.00 ...........................................................................................................................TGG-G--ACAAGAAATGGGAGCTG....... 21 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................................................CATAACTTG----------GCTGTTGCTGTA........................................................... 21 1 1.00 0.00 0.00 0.00 1.00 0.00 .................................................................ATAACTTG----------GTTGTTGTTGTA........................................................... 20 1 1.00 1.00 0.00 0.00 0.00 0.00 ....................ATTTTTTA------------ATTATTTCGCTGACT................................................................................................... 23 1 1.00 0.00 0.00 0.00 0.00 1.00 .................................................................................................AAAACACTGACATATAGAAC-T................................... 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ..........................................................TATTTTCATAGCTTG----------GTTGT.................................................................. 20 1 1.00 1.00 0.00 0.00 0.00 0.00 ...................................................................................................................................CAAAAAATGGGAGCTGTAAAATA 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ........................................................TATATTTTCGTAACTGG----------G...................................................................... 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ...........................................................ATTTTCATAACTTG----------GTTG................................................................... 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ........................TTTA------------ATTATTTCGCTGACT................................................................................................... 19 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................TTCATAACTTG----------GTTGTTGTTG............................................................. 21 1 1.00 0.00 0.00 0.00 1.00 0.00

droWil1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	scaffold_180772:4810613-4810759 -	52.4	ATTTTAAACAACTA-TTTCGGATCGTTTGAATGACCAATTTT---------------GTCT---TTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTG--CTAAATGAAAGATAATGAGACCCAGTCGACAGGACC-CAAGAAGACGATGTTGATTG AAGTTTACCAATTAATAGCAAATTGTTGGTATTTCCATTTTAAAATTGCTAACATTTACCTTAATTTCTCTTCTTTTCTTTTTCAATTC--------CAGCTTACGT--TGCTATAAATGAGAAAGGATCA-------------AGATCAAACGAAAAGGATGTTGATTG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ...............................................................................................................ATTTAAATGAGAAAGGAT......................................... 18 1 2.00 0.00 2.00 0.00 0.00 ...................................CTTTTTAAAATTGCAAAC..................................................................................................................... 18 2 1.00 0.00 0.00 0.00 1.00 .....................................TTTTAAAATTGCAAACAAT.................................................................................................................. 19 1 1.00 0.00 1.00 0.00 0.00 .........................................................................................................GT--TGCTATAAATGAGAAAGGATCA-------------AGAT...................... 28 1 1.00 0.00 0.00 0.00 1.00 ................................................................................................................................TCA-------------AGxTCAAACGAAAAGA.......... 18 1 1.00 0.00 1.00 0.00 0.00 ....................................................................................................................AATGAGAAAGGATCA-------------AGAT...................... 19 1 1.00 1.00 0.00 0.00 0.00 .....................................................................................................................................................AAACGAAAAGGATGTTGATTG 21 1 1.00 0.00 1.00 0.00 0.00 .................................................................................................................ATAAATGAGAAAGGATCA-------------A......................... 19 1 1.00 0.00 1.00 0.00 0.00 .............................................................................................................................GGTTCA-------------AGATCAAAAGAAA............. 19 1 1.00 0.00 1.00 0.00 0.00
1	scaffold_180764:275937-276064 +	49.23	ATTTTAAACAACTATTT--CGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGA--TAATGAGACCCAGTCGACAGGACCCAAGA------------AGACGATGTTGAT-TG AATTTTGACATTGATTTTTTGTTTTGTTTGTA-AACTAA----------------------------------TTAATG--TTTAAACAAAATTCAACATTAAAAATATAAAAAAAACTTATCGAAAAATTGCAAGCTTATTTTAAGTATTATAATGTTTATGTG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head .............ATTTTTTGATTTGTTCGT...................................................................................................................................... 18 2 0.50 0.00 0.50 0.00 0.00 .........................................................................................................................TGGAAAAATTGGAAGCTT.......................... 18 1 1.00 0.00 1.00 0.00 0.00 ..............TTTTTTGTTTTGTTTGGT-.................................................................................................................................... 18 23 0.04 0.00 0.04 0.00 0.00 .........ATTGTCTTTTTGTTTTGT.......................................................................................................................................... 18 3 0.33 0.00 0.33 0.00 0.00 .............ATTTTTTGCTTTGTTCGT...................................................................................................................................... 18 2 0.50 0.00 0.50 0.00 0.00 ...............TTTTTGTTTAGTTTGAA-AACT................................................................................................................................ 21 1 1.00 0.00 0.00 0.00 1.00 .........AATGATTTTTAGTTTTGT.......................................................................................................................................... 18 4 0.25 0.00 0.25 0.00 0.00 .........................................................................................AAATTCATCATTAAAATT.......................................................... 18 2 0.50 0.00 0.50 0.00 0.00 ..TTTTGACATTxATTTTTTGT............................................................................................................................................... 19 2 0.50 0.00 0.50 0.00 0.00 ........................................................................................AAAATTCATCATTAAAATT.......................................................... 19 1 1.00 0.00 1.00 0.00 0.00 ...............ATTTTGTTTTGTTTCTA-A................................................................................................................................... 18 5 0.20 0.00 0.20 0.00 0.00 ..TTTAGACATTTATTTTTTG................................................................................................................................................ 19 3 0.33 0.00 0.33 0.00 0.00 ..............TATTTTGTTTTGTTTCTA-A................................................................................................................................... 19 3 0.33 0.00 0.33 0.00 0.00 ..........TTTATATTTTGTTTTGTT......................................................................................................................................... 18 22 0.05 0.00 0.05 0.00 0.00
12	scaffold_181136:898213-898333 -	43.69	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGA-------------------AGACGATGTTGATTG ---------------------------GAAAAGTTAATTTTGTTTTTTATTTTTACAAGCAATT-------TGGGACACAGAGCACGAAGTTCTAAGTG------------CTTCAATTTAGAGGAGGTCGAAAAGTTTGATTGCCTAATTCGCACATTGAAAATAG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ............................AAAAGTGAATTGTGTTTT......................................................................................................................... 18 2 1.50 0.00 1.50 0.00 0.00 ....................................ATTTTGTTTTTTGTTTTTTC............................................................................................................... 20 8 0.13 0.00 0.13 0.00 0.00 ..................................................TTTTACAAxCAATT-------TCGGAC.......................................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 .....................................TTTTTTTTTTTATTTGTACA.............................................................................................................. 20 8 0.13 0.00 0.13 0.00 0.00 ................................................................................................TTG------------CTTCAATATAGAGGAG........................................ 19 1 1.00 0.00 1.00 0.00 0.00 ....................................ATTTTGTTTTTTATTTTTGTA.............................................................................................................. 21 4 0.25 0.00 0.25 0.00 0.00 ............................AAAAGTTAATTGTGTTTT......................................................................................................................... 18 1 1.00 0.00 0.00 1.00 0.00
14	scaffold_188802:900-1048 -	43.38	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAAT-GAGACCCAGTCGACAGGACCCAAGAAGACGA----------------TGTT--GATTG --------CAGCTAGTTCG------TCGGATTGCCATTTTTATTTTTTAATTGTACTACT---G-CGGTAGCCAACAGTGTTGATTATGGGGCTACACAAGTATTAACTCTCTCCTAGTCGGTGGCACA-GTGGAGACGTACTAAATCTACAATTCTGTTGTTCTCG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ...............................................................................................................................................AAATCTACAATTCTGTTGTTCTCG 27 2 2.00 0.00 2.00 0.00 0.00 ......................................................................................................................TCGGTGGTTCA-GTGGAGA.............................. 18 2 1.00 1.00 0.00 0.00 0.00 .............................................................................................................................................CTAAATCTACAATTCTGTT....... 19 2 1.00 0.00 1.00 0.00 0.00 ..........................................................................................................................................CTACTAAATCTACAATTCTGTTGTT.... 25 2 1.00 0.00 1.00 0.00 0.00 ..............................................................................................................................................TAAATCTACAATTCTGTTGTTCTCG 28 2 0.50 0.00 0.50 0.00 0.00 ...............................................................................................................................................AAATCTACAATTCTGTTGTTCTCG 28 2 0.50 0.00 0.50 0.00 0.00 ..............................................................................................................................................TAAATCTACAATTCTGTTGTTCTCG 25 2 0.50 0.50 0.00 0.00 0.00 .................................................................................................................CCTAGTCGGTGGCTCA-GTGGAGA.............................. 23 2 0.50 0.00 0.50 0.00 0.00 ...................................................................................................................TAGTCGGTGGCTCA-GTGGAG............................... 20 2 0.50 0.50 0.00 0.00 0.00 ......................................................................................................................................................CAATTCTGTTGTTCTCG 19 2 0.50 0.00 0.50 0.00 0.00 .........................................................................................................................................CCTACTAAATCTACAATTCTGT........ 22 2 0.50 0.00 0.50 0.00 0.00 ......................................................................................................ATTGGCTCTCTCCTAGTCGGT............................................ 21 1 1.00 1.00 0.00 0.00 0.00 .........................................................ATT---G-CGGTGGCCAACAGTG....................................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 .............................................................................................TACACAAGTATTAACTCTCTCCTGT................................................. 25 1 1.00 0.00 1.00 0.00 0.00 ..................................................................................................................CTAGTCGGTGGCTCA-GTG.................................. 18 2 0.50 0.00 0.50 0.00 0.00 ..................................................................................................................CTAGTCGGTGGCTCA-GTGGAGACC............................ 24 2 0.50 0.00 0.50 0.00 0.00 .....................................................................................................................GTCGGTGGCACA-GTGGAGACG............................ 21 1 1.00 0.00 0.00 0.00 1.00 ................................................................................................................................................AATCTACAATTCTGTTGTTCTCG 27 2 0.50 0.00 0.50 0.00 0.00 ................................................................................................................................................AATCTATAATTCTGTTGTTCTCG 24 2 0.50 0.00 0.50 0.00 0.00 ............................................................................................................................................ACTAAATCTACAATTCTGTT....... 20 2 0.50 0.00 0.50 0.00 0.00 .............................................................................................................................................CTAAATCTACAATTCTGT........ 18 2 0.50 0.00 0.50 0.00 0.00 ..................................................................................................................CTAGTCGGTGGCTCA-GTGGA................................ 20 2 0.50 0.00 0.50 0.00 0.00 ...................................................................................................................TAGTCGGTGGCTCA-GTGGAGAC............................. 22 2 0.50 0.00 0.50 0.00 0.00 .......................................................................................................................CGGTGGCACA-GTGGAGACGTA.......................... 21 1 1.00 1.00 0.00 0.00 0.00 ..................................................................................................................................CTGGAGACCTACTAAATCTACAATTCTGT........ 29 2 0.50 0.00 0.50 0.00 0.00 ...........................................................................................................................................TGCTAAATCTACAATTCTGTTGTTCT.. 26 2 0.50 0.00 0.50 0.00 0.00 ..........................................................................................................................................ATACTAAATCTACAATTCTGTTGT..... 24 2 0.50 0.00 0.50 0.00 0.00

droVir3 - 5 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
20	scaffold_13052:1601321-1601473 -	44.04	ATTTTAAACAACTATTTCGGATCG------TTTGAATGACCAATTTTG----------TCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAA-----TGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG ATATTGCGCAACCATTCTGGTCCGAATTTCATTGAGTCAGTCATTTTGGGTAACTCTTGAGTTTATTTCTTAATTGTCTTTCGCTGA-----AATTGTGCA-----------ATAAATAACAATTTTACCATCAGCATTAGCCAGCACACACACGCACGCTATCGGTTT Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ................................................................ATTTCCTAATTGxCTTTCGCTG................................................................................... 21 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................................................................................TTACCATCAGCATTGGGC.......................... 18 1 1.00 0.00 0.00 0.00 1.00 0.00 ....................................................................................................................................CAGCATTAGCCxCCACACACA................ 20 1 1.00 0.00 0.00 1.00 0.00 0.00 .................................................................................................................................................CACACACACGCACGCACTCGG... 21 1 1.00 1.00 0.00 0.00 0.00 0.00
11	scaffold_13047:15406651-15406829 +	38.28	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCA------ATTTTGTCTTTTATT-TTCTCTGTGTTTT---CAGTTAATGA--AAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTC-------------------GACAGGACCCAAGAAGACGATGTTGATTG GTTTATTGCAATTGCTTCGAGTTGGTTTAGTAGTTATGAATAATTGTTTATATTGTTTTTCTCTCTTTCTCCCACATCTAACTGAAACGATTGCTTATGAAATGCTCAATGTTTGTTGTTAGTACACATTCACATCCACACAAACACAAAGACCACACCCACAACAACAACAACAACAA Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ..........................................................................CATCTAACTGAGACGATTGCT.................................................................................... 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ....................................................................................................................................................................CAACAACAACAACAC 20 19 0.05 0.05 0.00 0.00 0.00 0.00 .................................................................................................................................................................CAACAACAACAACCAGAA 19 33 0.03 0.00 0.00 0.03 0.00 0.00 .................CGAGTTGGTTTAGTAGTTATGAATAAT....................................................................................................................................... 27 1 1.00 1.00 0.00 0.00 0.00 0.00 ............................................................................TCTAACTGAAACGATTGCTTATGA............................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 0.00 ...........................................................................................................................................................CACCCACAACAACAACAACA.... 20 11 0.09 0.00 0.00 0.00 0.00 0.09 ................TCGAGTTGGTTTAGTAGTTATGA............................................................................................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 .................................................................................................................................................................................AA 36 2 0.50 0.00 0.50 0.00 0.00 0.00 ..........ATTGCTTCGAGTTGGTTT....................................................................................................................................................... 18 1 1.00 0.00 1.00 0.00 0.00 0.00 ....................GTTGGTTTAGTAGTTATGA............................................................................................................................................ 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ........CAATTGCTTCGAGTTGAC......................................................................................................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 0.00 .....................................................................................................................................................................AACGACAAGAACAA 18 9 0.11 0.00 0.00 0.00 0.00 0.11 ................................................................................................................................................................ACAAGAACAACAACGACAA 20 16 0.06 0.00 0.00 0.06 0.00 0.00 ....................................................................................................................................................................CAACAACAACAACCA 19 33 0.03 0.00 0.00 0.03 0.00 0.00 .......................................................................................................................................................................CAACAGCAACAA 18 8 0.13 0.00 0.00 0.13 0.00 0.00
16	scaffold_12963:3265152-3265229 -	28.05	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCCAAGAAGACGATGTTGATTG T--------------------------------------------------------------------AATAAAAAAAAAAAAACAAAAACAAAAACAAAAAACAAACAAAATCT-TAAACTCAACATAAGAAAAAAACG-TATTGG Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ........................................................................AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAACAAA........................................ 36 1 7.00 0.00 6.00 1.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAA........................................ 36 2 3.00 0.00 2.50 0.50 0.00 0.00 ........................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAA......................................... 35 3 1.33 0.00 1.00 0.33 0.00 0.00 ...........................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACAA..................................... 36 1 3.00 0.00 3.00 0.00 0.00 0.00 .........................................................................AAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAA........................................ 35 3 0.67 0.00 0.67 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAAAAAAAAA........................................ 36 2 1.00 0.00 1.00 0.00 0.00 0.00 ......................................................................AAAAAAAAAAAAAAAAAAAAACAAAAACAAAAAACA.......................................... 36 1 2.00 0.00 2.00 0.00 0.00 0.00 ......................................................................ATAAAAAAAAAAAAAAAAAAA......................................................... 21 45 0.04 0.00 0.00 0.00 0.04 0.00 .............................................................................AAAAAAAAAAAAAACAAAAAAAAAAAACAAACAAAA................................... 36 1 2.00 0.00 1.00 1.00 0.00 0.00 ............................................................................AAAAAAAAAAAAAAACAAAAAAAAAAAACAAACAAA.................................... 36 2 1.00 0.00 1.00 0.00 0.00 0.00 ..................................................................................AAACAATAAAAAAAACAAAA.............................................. 20 15 0.07 0.00 0.07 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAACAAAAAAAAAAAAAAAAAACAAA........................................ 36 2 0.50 0.00 0.00 0.50 0.00 0.00 ............................................................................AAAAAAAAACAAAAACAAAAACAAAAAAxAAACAAA.................................... 35 1 1.00 0.00 0.00 1.00 0.00 0.00 .........................................................................AAAAAAAAAAAACAAAAACAAAAAACAAAAACAAA........................................ 35 1 1.00 0.00 1.00 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAAAAACACA........................................ 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ...........................................................................AAAAAAAAAAAAAAAACAAAAACAAAAAACAAA........................................ 33 1 1.00 0.00 1.00 0.00 0.00 0.00 ......................................................................................................................AAACTCAACATAAGAAAAAAACG-T..... 24 1 1.00 1.00 0.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAAAAAAAACAAAAAAAAAAAACAAACA...................................... 36 1 1.00 0.00 0.00 1.00 0.00 0.00 .....................................................................CAxAAAAAAACAAAAACAAAAACAAAAACAAAAAACA.......................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ...........................................................................AAAAAAAAAACAAAAxxAAAAACAAAAAACAAACAAAA................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAACAAAAACAAAAAAAAAAAACAAAA....................................... 35 1 1.00 0.00 1.00 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAACAA......................................... 35 3 0.33 0.00 0.33 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAAAACAACAAAAACAAAAAACAA......................................... 35 1 1.00 0.00 1.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAA...................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 .........................................................................AAAAAAAAAAAACAAAAAxAAAAACAAAAAACACACA...................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ...........................................................................AAAAAAAAAACAAAAACAAAAAxAAAAAACAAAAAAA.................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACA...................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 .........................................................................AAAAAAAAAAAAAAAAAACAAAAACAAAACACAAA........................................ 35 1 1.00 0.00 1.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAACAAAAACAAAAAxAAAAAACCAACA...................................... 35 1 1.00 0.00 1.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAACAAAAAxAAAAACAAAAAACAAACAA..................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAAAAAAAACAAAAACAAAAAAAAAACA...................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAAATAAACAAA..................................................... 23 45 0.02 0.00 0.02 0.00 0.00 0.00 ......................................................................AAAAAAAAAAAAAAACAAAAAxAAAAACAAAAAACAA......................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 .....................................................................AAGAAAAAAAAAAAAACAAAAACAAAAACAAAAAAA........................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 .....................................................................AAAAAAAAAAAAAAAACxAAAACAAAAACAAAAAAC........................................... 35 1 1.00 0.00 1.00 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAA........................................ 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ...........................................................................AAAAAAAAAACAAAAAAAAAAACAAAAAACAAAAA...................................... 35 1 1.00 0.00 1.00 0.00 0.00 0.00 .........................................................................AAAAAAAAAAAACAAAAACACAAACAAAAAACAAAA....................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ............................................................................AAAAAAACACAAAAACAAAAC................................................... 21 5 0.20 0.00 0.20 0.00 0.00 0.00 .........................................................................AAAAAAACAAAAGAAAAACAA...................................................... 21 11 0.09 0.00 0.09 0.00 0.00 0.00 A--------------------------------------------------------------------AAAAAAAAAAAAAAAACAAAAACAAAAACAAAAAA............................................ 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ...........................................................................AAAAAAAAAACAAAAAAAAAAACCAAAAACAAACAA..................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 ..........................................................................AAAAAAAAAAAAAAAAACAAAAACAAAAAAAAA......................................... 33 4 0.25 0.00 0.00 0.25 0.00 0.00 ..........................................................................AAAAAAAAAAAACAAAACAAAAACA................................................. 25 12 0.08 0.00 0.08 0.00 0.00 0.00 .........................................................................................AACAAAAACAAAACGCAAA........................................ 19 8 0.13 0.13 0.00 0.00 0.00 0.00 ........................................................................AAAAAAAAAAAAAGAAAAAAAAAAACAAAAAACAAA........................................ 36 1 1.00 0.00 1.00 0.00 0.00 0.00 .............................................................................................AAAACAAAAAACAAGCAAA.................................... 19 9 0.11 0.00 0.11 0.00 0.00 0.00 ...........................................................................AAACAAAAAACAAAAAxAAAAACAAAAAACAAACAA..................................... 35 1 1.00 0.00 1.00 0.00 0.00 0.00 .........................................................................AAAAAAAAAAAACAAAAACAAAAACAAAAAAxAAACA...................................... 36 1 1.00 0.00 0.00 1.00 0.00 0.00 ......................................................................ATAAAAAAAAAAAAAAAAAAAAAAAA.................................................... 26 45 0.02 0.00 0.00 0.00 0.02 0.00 .......................................................................AAAAAAAAAAAAAACAAAAAAAAAAACAAAAAACAA......................................... 36 1 1.00 0.00 1.00 0.00 0.00 0.00 .........................................................................AAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAA........................................ 35 1 1.00 0.00 1.00 0.00 0.00 0.00 .............................................................................................AAAACAAAACACAAAAAAA.................................... 19 22 0.05 0.00 0.00 0.05 0.00 0.00 ...........................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACA...................................... 35 1 1.00 0.00 0.00 1.00 0.00 0.00
2	scaffold_12875:13871289-13871359 +	27.16	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCT-AAATGAAAGATAATGAGACCCAG-TCGACAGGACCCAAG-AAGACGATGTTGATTG AAAAAAAAA---------------------------------------------------------------------------AAACG-TAATAAAA--ACACACAAACACACACAGCTAGCCAGTGCGCGAGTGAGACGAAGTAG--TG Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ..............................................................................................AAAA--GCACACACACACACA.................................... 19 36 0.03 0.00 0.00 0.03 0.00 0.00 .................................................................................................C--ACACACACACACACACAGCT............................... 21 48 0.02 0.02 0.00 0.00 0.00 0.00
9	scaffold_12963:12964466-12964493 +	13.01	ATTTTAAACAACTATTTCGGATCGTTTGAATGACCAATTTTGTCTTTTATTTTCTCTGTGTTTTCAGTTAATGAAAGATAGTGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGG-ACCCAAGAAGACGATGTTGATTG -------------------------------------------------------------------------------------------------------------------------CAAAAGCCAGGTGATAAAATGTTGATTG Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head