Possible Orthologs for dme-mir-4939

droSim1 - 6 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	chr2R:17459524-17459663 -	88.01	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATCCACATTTATTTGGCATCATGCTTCTGCGAGCTCTACCACTTCTCCTTGCACTCTTTGTCCTTTCCAAAAGCGACACTGATGCTGGTGAAGATTCGGAGGAGGACGACAGCGAAGACTGCAACAGGACGACTCTTGGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..........................CTACGAGCTCTACCACTC................................................................................................ 18 1 1.00 0.00 1.00 0.00 0.00 ............................................................................................GATTTGGACGAGGACGAC.............................. 18 1 1.00 0.00 0.00 1.00 0.00 ......................................................................................GGTGAAGATTCGGAGGAGGAC................................. 21 1 1.00 0.00 0.00 1.00 0.00 .........................................................................................GAGGATTCGGAGGAGGTC................................. 18 1 1.00 0.00 0.00 0.00 1.00 ......................................................................................................AGAACGACAGCGxAGACTG................... 18 1 1.00 0.00 1.00 0.00 0.00 ..............................................................................................................AGCGAAGACTGCAACAGGACGACT...... 24 1 1.00 0.00 0.00 1.00 0.00 .........................................................................................GAGGATTCGGATGAGGAC................................. 18 1 1.00 0.00 0.00 1.00 0.00
10	chr2R_random:2793400-2793530 -	36.41	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTG-AAGAT----------------------------------------------------------TCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATA-----------------------------------------------------------------AAAAGAGTCGCACATGCAGCTCCAAAACTCAGTTGTTTATAATGACTTGGAGTGTGTTCACATTTCTGTTGGCGGCTCTCTTACGGCCGGTTCGTGGCGATCTGGATGTCCAAAGCCGCATCAT---TGGA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .................................................................................................................................ATTTCTGTTGACGGCCCT.................................................... 18 1 5.00 0.00 0.00 0.00 5.00 ...........................................................................................................................GTTCACGTTCCTGTTGGC.......................................................... 18 1 1.00 0.00 0.00 1.00 0.00
3	chr2L:2208755-2208959 -	22.76	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTG---CACTCTTTGTC-------------------CTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCG---GAAGAGGA---CGACGAAAACG------------------------------------------------------ACTGCAACCGGACGA-CTCTTGGT GTGTGGTC---------------TTCGTAAAATGTTCATTAAAATTCTTTTCTTAATTATTTCTTCCAAGTGGGCTACTCGAAACCCTTTAAAAGCGGGACTAGCCCGGATCGAAGTCATTCTCAGCATAGTCGCGTTCGAAATGCTCCTCAAGTGGCTTGTTCTGGTCGCCAGCGTCACCCTGATCTCGGCAGGATCTTCTCCA---GAGCGAATAGTGGGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ...........................................................TTTCATCCAAGTGGGCCA.................................................................................................................................................. 18 1 2.00 0.00 2.00 0.00 0.00 .............................................................................................................................................................CTTGTTCTGTTCGGCAGC................................................ 18 1 1.00 0.00 1.00 0.00 0.00 .........................................................................................................................................................................................................TACA---GAGCGAATGGTGGGT 19 1 1.00 1.00 0.00 0.00 0.00 ..............................................................................................................................................................................GGTCACCCTGTTCTCGGC............................... 18 1 1.00 0.00 0.00 0.00 1.00
5	chr2L:19846904-19846924 -	7.61	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT C----------------------------------------------------------------------------------------------------------------------CGGGACTGGACTTCC-CCTTC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .......................................................................................................................CGGGACTGGACTTCC-CCT.. 18 1 1.00 0.00 0.00 1.00 0.00		None
8	chr2R:17460576-17460592 -	4.35	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATCAGCGGATCA---------------------------------------------------------------------------------------------------------------------------TAAAC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo	None	None
2	chr2R:5771924-5771932 +	4.35	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AT-----------------------------------------------------------------------------------------------------------------------------------TGTCGGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo	None	None

droSec1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
10	super_9:2164747-2164886 -	88.01	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATCCACATTTATTTGGCATCATGCTTCTGCGAGCTCTACCACTTCTCCTTGCACTCTTTGTCCTTTCCAAAAGCGACACTGATGCAGGTGAAGATTCAGAGGAGGACGACAGCGAAGACTGCAACAGGACGACTCTTGGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......................................................................................GCTGAAGATTCCGAGGAG.................................... 18 1 1.00 0.00 1.00 0.00 ....................................................................................................GGAGAACGACAGCGAAGAG..................... 19 1 1.00 0.00 1.00 0.00 ............................................................................................GAATCAGAGGAGGAGGAC.............................. 18 1 1.00 0.00 1.00 0.00 ...........TTTGGCATCCTGGTTCTG............................................................................................................... 18 1 1.00 0.00 1.00 0.00 ............................................................................................GATTCAGAGGCGGAGGACA............................. 19 1 1.00 0.00 1.00 0.00
9	super_9:2163718-2163846 -	36.52	ATGCACATT----TATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCA--AAAGTGACACGGGTG-CAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AAAAAGAGTCGCACATGCAGCTCCAAAACTCAGTTGTTTATAATGACTTGGAGTGTGTTCCCATTTCTGTTGGCGGCTCTCTTACGGCCGCTTCGTGGAGATCTGGATGCC---------------CAAAGCCG---CATCATTGGA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ............................................GACTTGGAGCGTGTGCCCA.................................................................................... 19 1 1.00 0.00 1.00 0.00 ............................................................................................ACGTGGAGATCTGGAAGC..................................... 18 1 1.00 0.00 1.00 0.00
8	super_9:2162773-2162827 -	21.35	ATGCACATTTATTTGGCATCATGC-TTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GAGTACTT-TAGTCAGTACGGTGCCTAGCACTGTGCCTACTACTATACCTAGTACT------------------------------------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
2	super_1:4788186-4788200 +	7.97	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GGACGCATTG-----------------------------------------------------------------------------------------------------------------------------TAGGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head	None	None

droYak2 - 7 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
13	chr2R:18832811-18832950 -	70.89	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTT------GTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AACCGCGTTTATTTGCCAAAATGCTGCTCCGAGCTCTACCACTTCTGCTCACACTCTGTGTGTTGGTCCTCTCCAACGACGACACGGATGCAGATGAAGAAGAGGAAGAGGACGAC------GACTGCAACAAGGCGACTCTTGGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ....................................................................................................AGAAGAAGAGGACGAC------GACT.................... 20 1 2.00 0.00 0.00 2.00 0.00 0.00 .......................................................................................................GGAAGAGGACGAC------GAGCG................... 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................................................GGAAGAAGAGGAAGAGGAGGA............................... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 .................................................................................................AGAAGACGAAGAGGAGGA............................... 18 1 1.00 0.00 0.00 1.00 0.00 0.00 .....................................................................................................GAGGACGAGGACGAC------GATT.................... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................................................................AAGAAGATGAAGAAGAGGA........................................ 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ...........................................................................................CGATGAAGATGAGGAAGAGGA.................................. 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ............................................................................................GATGAAGAAGAGGAGGAGGATG................................ 22 1 1.00 0.00 0.00 1.00 0.00 0.00 ...............................................................................................GAGGACGAGGAAGAGGAC................................. 18 1 1.00 0.00 0.00 1.00 0.00 0.00 ..................................................................................................GAGGAGGACGAGGACGAC------........................ 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ....................................................................................................AGAGGAAGAGGAGGAG------GA...................... 18 1 1.00 0.00 0.00 1.00 0.00 0.00 .............................................................................................ATGAAGATGAGGCAGAG.................................... 17 1 1.00 0.00 0.00 0.00 1.00 0.00 ...................................................................................................AAGAGGAAGAGGAGGAG------G....................... 18 2 0.50 0.00 0.00 0.50 0.00 0.00 ...............................................................................................GATGAAGAGGAGGAGGACG................................ 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ..............................................................................................TGAAGAAAAGGAGGAGGA.................................. 18 1 1.00 0.00 0.00 1.00 0.00 0.00 ............................................................................................GATGAAGAGGAGGAGGAGG................................... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ............................................................................................GATGAGGACGAGGAAGAGG................................... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ...............................................................................................GAAGAAGAGGAAGAGGAGGAG------GA...................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00
7	chr2L:2249288-2249426 -	48.59	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT CGCT--TTTTATTCGCTGCTTGCACTGCGAAATTGAATTTTAATTCATTTGCATTTTTTCTATGATCTGGGAGAGAGAAAAACACAGATGAACATTATTAATACGGCCCATAAGCCCAATAAATGCTCATGATTCCCCGC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...........................................................................AxAAAACCACAGACGAACA.............................................. 18 1 1.00 1.00 0.00 0.00 0.00 0.00
3	chr2L:2225620-2225755 -	42.43	ATGCACATTTATTT--GGCATCATG-CTTCTGCGATCTCTACCAATT-TTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAAC---CGGACGACTCTTGGT TATCTCTAATTTCTAAGTGATTACGACATTTGTCGCCTTTGTAAAATGTACATTAAAATTCTTTTGCTAATTATATTTTGCACGTGCGCTACTCGGAATTCGAGTG-CGGTGCT---GTTGTCTATAGTGAAAAG-------ATCGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
5	chr2L:2232025-2232195 -	35.97	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGA-----------------------------------------------------------------------------------------CTGCAACCGGACGACTC-TTGGT TTGCTAATT-----------------------------------------------------------ATATTTTGCACGTGCGCTACTCGGAACCCTTAAAAGCACGACTAGCCCGGATCGAAGTCATTTCTAACACTAGTCGCGTTCGAAATGTTCCTCCACTGGCTTGTTGTGGTCGCCAGCGTCACCCTGATCTCGGCAGGATCTTCACCGGAGCGAATAGTAGGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...................................................................................................................................................................CTGCCTTATTGTGGTCGC................................................. 18 2 0.50 0.00 0.00 0.00 0.00 0.50
6	chr2L:2233083-2233188 -	31.27	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GTGCAGCTCTAGTTGAAATGTTTGTGCAGTGGATTTTGCTGATCTTCAGCGTCACCCTGGTTTCCTCTAAAGGGATTCCG-------------------------------GAACGAATCG---TGGGCGGCGACTTGAT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...........................................................................TTCCG-------------------------------GAACGAATCG---TGGGCG.......... 21 1 1.00 0.00 0.00 1.00 0.00 0.00
12	chr2R:18831812-18831915 -	29.93	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCA-CTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGA-CTCTTGGT AAAAGCAGTTGTATGTAATGATCCGTAG---AGTGTTCCCCTTTCTGTTGGCGGCTCTTTTGC------GGC-----------------CG---GTTCTCG---------GTGATCCGGATGCCCAAGCCCGCATCATTGGA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
14	chr2R:18833874-18833890 -	5.07	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATCAGC---------------------------------------------------------------------------------------------------------------------------GGATCATAAAT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head	None	None

droEre2 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	scaffold_4845:20234099-20234238 -	66.16	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCT------TTGTCCTTTCCAAAAGTGACACGGGTGCAGG------TGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AACCACGTTTATTTGCCATAATGCTGCTCCGAACTCTGC------TCCTTACGCTCTTCGTGTTTGTCCTTGCCAAAAACGATACGATTGCAGAAGTAGAGGAAGAGTCGGACGAGGACGAAG------GATGCAACAAGGCGACTCTTGGT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
6	scaffold_4845:20233066-20233200 -	38.11	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAA----------------------------------G------AGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATAAAAA--------GAGTCGCAC--ATGCAG--------------------------------CTCCAAAGGCAGTTCCACTATAGATGATGATCCGAAGTGTGTTCCCCTTTCTGTTGGCGGCTCTTTTACGGCAGGTTCGTGGTGATCTGGATGCCCAAGCCCGCATCAT---TGGA Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
4	scaffold_4845:18567602-18567616 -	7.97	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GGACGCATTG-----------------------------------------------------------------------------------------------------------------------------TGGGT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head	None	None
8	scaffold_4845:20235169-20235178 -	3.62	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GATCATAG----------------------------------------------------------------------------------------------------------------------------------GC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head	None	None

droFic1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
12	scf7180000454066:2882629-2882771 -	52.88	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTG------CACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTG---AAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AGCCAATTCCATTTGCGATCATGATTCTGTCGACTCTGCTACTCATCCTGGGGATGACTGTATTTGTTCTTTCCGATGAAACTACAACCACAACCAAGAAACCTTCGGAGGATAACGA------TAGCTGCAACAAGACGACCATTGGC Size Hit Count Total Norm
11	scf7180000454066:2881567-2881705 -	41.9	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGC------------------ACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGAC------------------------------TCTTGGT ATGCTTGCTTATAAAAAGAGTTGCTCATGGAGT----TCCAGTTTTAGTTGGCAAAATGATACGGCTTGTG--TTTT--CTTTTTTACTGGTGACAA----------------------------------------TACCAC-CCAAGATCCTTGGTGATCTTGAGGTCCAACCCCGCATAGTTGGA Size Hit Count Total Norm
5	scf7180000453773:168292-168413 -	40.95	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGAC--GACTCTTGGT ATTTGTTTGGCCGTGG-GTTCTGCCTTTGCCGGCTCCGTT-------------------GGCGTTTCCAATGGCGATCCCTTCGAGCGCGAGGGCCGCATTGTGGGTGGCGAGGACACCACTATTCGAGCACATCCCTACCA Size Hit Count Total Norm
16	scf7180000454082:664421-664455 -	15.61	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT -----------------------------------------------------------------------------------------------------GAGGCCGTCGAAATCGAGAGCCACCCGT----ACCAGGT Size Hit Count Total Norm

droEug1 - 5 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
10	scf7180000409672:6848444-6848567 -	44.93	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ACCAATAT-CGTTTGCCACAATGATACTACCAGTTCTGCCACTCCTTCTAGGACTTTTTGTATCTGTCCAGTGTGGCAAGTTCCCACCATCGGAATACGAAGAG---------------TGCAGCAATGCAACTATTGGC Size Hit Count Total Norm
8	scf7180000409672:6847374-6847500 -	42.42	ATGCAC-------------------ATTTATTTGGCA-TCATGCTTCTGCGATCTCTACCAATTTTCCTTGC-ACTCTTTGTCCTTTCCAAAAGTGACAC-GGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AAAAGACTTTCCCAGGCCAAGCTTAGTCTAGTTGCCAGCCATGTTTCGGCTTGTC-------TTTTCTCTGCTACTAG-TGGCTCTTCCACAGTTAATCTTGGGTGA-TCCGCACTTTC--AA---------------GA------CCG---CATCATTGGT Size Hit Count Total Norm
12	scf7180000409672:6849661-6849767 -	30.58	ATGCACATTTAT-TTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTT------------------------GTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATGAAA-TTCATATGGCTAAAATGCTCTGGCCAGCACTTATACTCCTTCTAGTGAGCCTATCCTGGTCGTCAACTGCAACTGCTCTAAATTCAAAATGCGG---------------------------------------------------------GATCACT Size Hit Count Total Norm
5	scf7180000409554:4029718-4029904 -	29.99	ATGCACATTTATTTGGCAT----CATGCTTCTGCGAT---------------------------------------------------------------------------------CTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAG---TGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGG-A-CGACTCTTGGT ATTCTTACTTATTTATGGTGCAAAA---TTCTTTGAAAATATTGAAAATTTAGACCTATAAAAGGAAACTCAACTCATTTTAAAGTCACTCGTAAGTCTAAGTCGGCTCAAAATGTTGATCCAGTGGATTTTCTTGATCTCCATGGTCACCCTAATATCCGCCATATGGATTCCG----------------------------------------GAACGGATAGTTGGT Size Hit Count Total Norm
7	scf7180000409554:4041301-4041382 -	26.74	ATGCA-CATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GCATTATCTGCTCTTGGCAATA-----------GCTTTGCT------------------------------AAGTGTTCCTGGGGCTCCTGGAGTTTCTGGAGTTG------------------AACGTATAACTCATGGA Size Hit Count Total Norm

droBia1 - 6 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
12	scf7180000301754:4157293-4157441 -	48.48	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTT------TCCA------------------AAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AACCAATGTCATTCGCAATAATGATGCCAAAAGCTGTGCCCCTCCTTCTGGGGCTCCTCGTGCTCGTTCTCTCCGATCCCTATCCCGGTCGTGCGGATTACACGGATC---------------CAGAGGAGGAGGAGGCTAAGTGCAACAATAAGACTATTGGT Size Hit Count Total Norm
2	scf7180000301500:8915-9057 +	43.3	ATGCA-------------------------------------CATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATAAGATGAGGCTCGCCTAGGCGTAGGTCACACCTTACTTCAACACCGTTTGAAATGTTCATCCAGTGGCTTCTTCTGATCTCAAGCGTCATCCTGGCGTCTTCCGAAGGGATTACCG-------------------------------A---GAGAATTGTGGGAGGCCACTCGGT Size Hit Count Total Norm
16	scf7180000301754:4159672-4159792 -	38.83	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATTGGTTTTATTGGGGAAAAATGCTGCAACCAGCTGGAATACTTTTCCTAATCATCCTGTCCTGGGCGGCCGTTGAAGCGGCTCCGAATGACGAGTG------------CTTTGCCCGTGGAAACCCAACGAC------- Size Hit Count Total Norm
13	scf7180000301754:4158517-4158561 -	18.73	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATCCTGC----------------------------------------------------------------CGTGGT----CGGCGAGTGCACA---GGATGCGGATGACAAGTGT------------------------ Size Hit Count Total Norm
7	scf7180000301754:1066228-1066242 -	7.25	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GGACGCATTGT-----------------------------------------------------------------------------------------------------------------------------CGGC Size Hit Count Total Norm	None	None
9	scf7180000301754:4154590-4154594 -	2.9	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT TTGGA--------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None

droTak1 - 10 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
13	scf7180000415411:112699-112853 +	43.95	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCT----------------TTCCAAAAGTG--ACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AACCAGTTTTAATCGAGACCGTGATGCTAAGAGCTCTACCACTCTTTCTAGGGCTATTCCTGATCGTTCATTCCGATCCCTTCCCAGATCCCTTTCCCGCTACCTATACGGATCCGGAGGAGGA---GGAAGCTAAGTGCAATTCTAAAACAATCGGT Size Hit Count Total Norm
12	scf7180000415411:107274-107419 +	39.48	AT------------------GCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATTGAAGTCCCTAAGCAGTAACGTATTCGTTTAGAAAAATGCTCCAATCACCTCCTATACTATTCCTAGTGATCCTCGCCTGGTCGTCGAGAGCACA------------GGATTTGGATGCCAGCTGTGGGATCGCTGGCAAAATAACGCCGATCAGG Size Hit Count Total Norm
9	scf7180000415411:102910-103034 +	39.27	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GTATTCATATAGG---AAAAATGATCCAATTAGCTTGCATACTTCTTCTAGTAACCCTGCCCTGGTCGGAAAGTCGTTCGGATCCGTATATAAA------------CTGTTCTTATGGATCAAAAAGAATTCCTATTAAG Size Hit Count Total Norm
3	scf7180000415138:39953-40062 +	39.16	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT CTGTGGGTTC------------------------------GACTTTTGCCGGCACCGTTGGCGTTTCTAATGCCGATCCCTTCGAGCGTGAGGGTCGCATTGTGGGTGGCGAGGATACCACAATCCGGGCTCATCCTTAC Size Hit Count Total Norm
11	scf7180000415411:106216-106311 +	26.64	ATGCACATTTATTTGGCATCATGCTTCTGCGAT---------CTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTC-----TTGGT GGGCT--TCATATAGTCAACATGCTCCAACCAACGAGTATACTTCTTCTAGTAATCCTC-CCCTGGTTGGCCATTGCT-------------------------------------------------------GCGGACAACTGTGGGATTCGT Size Hit Count Total Norm
14	scf7180000415411:113776-113978 +	24.23	ATGCACATTTATTTGGCATCATGCTTCTGCGATC---------------------------------------TCTACCAATTTTCCTTGC------------------------ACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT TAACTAA-TTAACTAGCACTACTTCCTAGTGAGATAGAACTTTGAAAAGTATATTTACCTAAAGGTAAAACCATTAATCAATTTGATTTATTACTTTGCAGATAAGAAGTACTGGAGAGTTTTTACCTATAAAAAGAGTTGCGAATGCAATATCAAATTCAGTTGGCTATAATGAACCGGCTGGTGTTCCCTCTTCTACTGGT Size Hit Count Total Norm
22	scf7180000416008:478201-478232 +	14.32	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGAC-----TCTTGGT G-----------------------------------------------------------------------------------------------------------------ACGAGTACCCCTGGAAGAACGTATTATCGGA Size Hit Count Total Norm		None
17	scf7180000415564:193153-193164 +	5.07	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AAAGCCATTAAT-------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None
10	scf7180000415411:102000-102016 +	5.07	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT A---------------------------------------------------------------------------------------------------------------------------ACAAAGGATCATAAAT Size Hit Count Total Norm	None	None
5	scf7180000415229:400310-400319 +	4.35	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ----------------------------------------------------------------------------------------------------------------------------------GATTGTGGGA Size Hit Count Total Norm	None	None

droEle1 - 5 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
8	scf7180000491283:40306-40430 +	46.2	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAA---------CGACTGCAACCGGACGACTCTTGGT AGCCAATTTCATTTGCGATAATGATTCTACCAGCTCTACAACTCTTCCTAGGATTGTTGGTGCTCGT------------------------ATATTCCGAGGACGACGAGGAAATAGAAGCGGACAAGTGCAGAAACGCCACTATGGGA Size Hit Count Total Norm
5	scf7180000491283:35551-35624 +	34.06	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AGCCAATTTCATTTGCGATAATGATTCTAACAGCTCTACCACTCTTCTTAGGATTGTTTTTCAGTGACCAAAAT------------------------------------------------------------------ Size Hit Count Total Norm
9	scf7180000491283:41342-41524 +	27.98	ATGCACATTTATTTGGCATCATGCTTCTGCG------------------------------------------------------------------------ATCTCTACCAATTTTC---CTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACG------------------------------ACTCTTGGT C-----ACTCAATTTGAGGTATGACTTTGCAGATAAGGACAACTAGGGCATTTTGCCTATAAAAGTCTTGGAGGTCAGGCACTTAGTTTAGTTGGCAATAATGA-TCCGACTAGTGTTCCCTCTTCTGCTGCTGGCCCTTCC-A--------------------------------------------------------TGGACGGTGTTTGGTGGCCCTGACCCCCAGACCCGCATCATTGGC Size Hit Count Total Norm
4	scf7180000491283:34205-34234 +	10.51	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT -----CATTTTTCTGATTTTGTTTTTCGGTGACC---------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm
2	scf7180000491214:2671047-2671061 +	7.97	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GGACGCATTG-----------------------------------------------------------------------------------------------------------------------------TCGGT Size Hit Count Total Norm	None	None

droRho1 - 13 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
18	scf7180000767166:1286-1419 -	56.05	ATGCACATTTATTTGGCATCATGCTTCTGCGA---TCTCTACCAATTTTCCTTGCACTCT------TTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AATCAATTCTATTTGCGATAATGATTCTACCAGTGGCGCTACCACTCTTTCTAGGGCTGTGTGTGCTCGTCCTTTCCGAG---GACTCG---------GAGGACTCGGAAATGGAAGTCGA---CAAGTGCGACAACACCACTATTGGC Size Hit Count Total Norm
28	scf7180000780075:2405-2538 -	56.05	ATGCACATTTATTTGGCATCATGCTTCTGCGA---TCTCTACCAATTTTCCTTGCACTCT------TTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AATCAATTCTATTTGCGATAATGATTCTACCAGTGGCGCTACCACTCTTTCTAGGGCTGTGTGTGCTCGTCCTTTCCGAG---GACTCG---------GAGGACTCGGAAATGGAAGTCGA---CAAGTGCGACAACACCACTATTGGC Size Hit Count Total Norm
19	scf7180000779340:32017-32163 -	46.32	ATGCACAT--------------------TTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGAC-GAAAACGACTGCAACCGGACGACTCTTGGT ATGAATTTGAACCATTTAAATGAAAGAATAAATAAGCAACAATCTCTTA-AATTTTCAACAATATTTCATGATTTCAATATAATCACCA-----------TCTGGTGGCAAAAACTTTATTCGCGACGTTTGAAACTCTTTGCAA--GCACTCCTTTTCAT Size Hit Count Total Norm
11	scf7180000767164:7047-7172 -	40.8	ATGCACATTTATTTGGCATCA----------------------TGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AAATACATGTGCCTTGCAAAAGGAATTTAGATATACAACAAAATGCTTCAGACAGTTTGTCTACTATTTCTAGTGATCCTTCCGTGGTCGGCAAGT---------------GGAGCTCC---------------------TAATAACTGTGAGATCGTTGGC Size Hit Count Total Norm
20	scf7180000779340:35160-35242 -	31.8	ATGCACATTTA-------TTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTC-CTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GTCGATTTTTCGCTGAATTTTGGCATCGTTTTTAT----TTTTGACCCATTTTCATGTCATTTATTTCCATGTTTCCGATGTGGCCC------------------------------------------------------------- Size Hit Count Total Norm
10	scf7180000758828:347-452 -	27.93	ATGCACATTT--ATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT AGGAATTTAGATATACAACAAAATGATCCAGCCAGTTTGTCTACTATTTCTATTGATTCTTCCGTGGTCGGCAAGTGGAGCGGTTG------------------------------------ATAAGTGTGGGATCGTTGGC Size Hit Count Total Norm
17	scf7180000767166:344-408 -	26.24	A-TGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ACTGCAG--TTTTATGCCGTGGTAGTTATGCAATC--TGCCTATGTT--ATGCAGTCACTAACATTTTAAA---------------------------------------------------------------------- Size Hit Count Total Norm
12	scf7180000767164:8519-8585 -	24.64	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT ATGTATTCTTGATCAGCATCACCAGGAGAGTCGATCTACCCATGTCCGTCTTTCCGTCTGTCCGTTC------------------------------------------------------------------------- Size Hit Count Total Norm
21	scf7180000779340:36072-36088 -	7.25	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT CCGAGCGCATCGTGGGA--------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm		None
6	scf7180000779357:19242-19244 +	1.45	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GGC----------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None
15	scf7180000767164:9276-9278 -	1.45	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GGC----------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None
1	scf7180000768815:7112-7114 +	1.45	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GAT----------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None
29	scf7180000780075:3736-3738 -	1.45	ATGCACATTTATTTGGCATCATGCTTCTGCGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACACGGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGT GGC----------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None