Possible Orthologs for dme-mir-4919

droSim1 - 12 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
14	chr2R:10571957-10572046 +	95.6	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTCCTCAATTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ......................................................TAATCCCTGAACGACTTGCAG............... 21 1 1761.00 8.00 806.00 600.00 347.00 ......................................................TAATCCCTGAACGACTTGCAGT.............. 22 1 772.00 9.00 288.00 200.00 275.00 ......................................................TAATCCCTGAACGACTTGCA................ 20 1 301.00 0.00 177.00 108.00 16.00 ......................................................TAATCCCTGAACGACTTGCAGA.............. 22 1 275.00 0.00 103.00 92.00 80.00 ......................................................TAATCCCTGAACGACTTGCAGG.............. 22 1 116.00 0.00 35.00 38.00 43.00 ......................................................TAATCCCTGAACGACTTGCAGC.............. 22 1 69.00 0.00 40.00 13.00 16.00 ......................................................TAATCCCTGAACGACTTGC................. 19 1 60.00 0.00 36.00 22.00 2.00 ......................................................TAATCCCTGAACGACTTGCAT............... 21 1 36.00 0.00 13.00 11.00 12.00 ......................................................TAATCCCTGAACGACTTGCAC............... 21 1 36.00 0.00 22.00 7.00 7.00 ......................................................TAATCCCTGAACGACTTGCAGTT............. 23 1 26.00 0.00 14.00 10.00 2.00 .....................................................TTAATCCCTGAACGACTTGCAG............... 22 1 17.00 0.00 7.00 5.00 5.00 ......................................................TAATCCCTGAACGACTTGCGG............... 21 1 17.00 0.00 2.00 11.00 4.00 ......................................................TAATCCCTGAACGACTTGCAGTA............. 23 1 15.00 0.00 7.00 6.00 2.00 ...............GTGAGTCTCTAGGGGATTAGC...................................................... 21 1 14.00 7.00 2.00 4.00 1.00 .....................................................TTAATCCCTGAACGACTTGCA................ 21 1 11.00 0.00 9.00 2.00 0.00 .......................................................AATCCCTGAACGACTTGCAGT.............. 21 1 10.00 2.00 7.00 1.00 0.00 ......................................................TAATCCCTGAACGACTTGCG................ 20 1 10.00 0.00 3.00 5.00 2.00 ......................................................TAATCCCTGAACGACTTGCAA............... 21 1 8.00 0.00 4.00 2.00 2.00 .......................................................AATCCCTGAACGACTTGCAG............... 20 1 7.00 0.00 3.00 4.00 0.00 ......................................................TAATCCCTGAACGACTTGCAGAA............. 23 1 6.00 0.00 3.00 3.00 0.00 ....................................................ATTAATCCCTGAACGACTTGCAG............... 23 1 5.00 0.00 3.00 2.00 0.00 ......................................................TAATCCCTGAACGACTTGCAGAAA............ 24 1 5.00 0.00 1.00 2.00 2.00 ......................................................TAATCCCTGAACGACTTGCATT.............. 22 1 4.00 0.00 0.00 0.00 4.00 ........................................................ATCCCTGAACGACTTGCAG............... 19 1 4.00 0.00 3.00 1.00 0.00 .....................................................TTAATCCCTGAACGACTTGCAGT.............. 23 1 4.00 0.00 1.00 2.00 1.00 ......................................................TAACCCCTGAACGACTTGCAG............... 21 1 4.00 0.00 2.00 1.00 1.00 ........................................................ATCCCTGAACGACTTGCAGA.............. 20 1 3.00 0.00 2.00 1.00 0.00 ......................................................TAATCCCCGAACGACTTGCAG............... 21 1 3.00 0.00 1.00 2.00 0.00 .......................................................AATCCCTGAACGACTTGCAGA.............. 21 1 3.00 0.00 1.00 2.00 0.00 ...................................................AATTAATCCCTGAACGACTTGCAG............... 24 1 3.00 0.00 2.00 0.00 1.00 .......................................................AATCCCTGAACGACTTGCAGTT............. 22 1 3.00 0.00 1.00 2.00 0.00
1	chr2L:5063116-5063206 +	54.52	TGGACATACTAAAT--GGTGAGTCTC--TAGGGGATTAGCAAGCT--ATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TTTGAATAATATATGCGGTGAGCTGAATGAAGTGATCA---TACTAAATCATATTTAAACTAAGCCAT--ACTCTTTATAGAAACTGCTCTGGGTG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
25	chrX:1447864-1447949 +	50.47	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGATATAATCGCAGGTGAGTTT----GCCATCAGTCTAATAAATATTTATAATAGCTTAATATTCGCCGTTTAGAAACTGCAATGGGCA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
29	chr2L:9527548-9527624 -	45.65	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGAC--TTGCAGAGGCCGTTTTGGGTG CGGAGACACTA--TCATTGATTTCCAGGAGCATGCCAA-CTAC-----CTTA------CTTTGGATGTCATCTGC-GACACGGCGATGGGAG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
21	chr3R:16814612-16814693 +	42.63	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTG--------------------AACGACTTGCAGAGGCCGTTTTGGGTG TGGAA--------------------------GCAGCTTGCCGTAGGTATTTACCTGGGTCCTCAATCACCTATATTTCATGGGAATTACTTGCAGAGACAACGATGGG-- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
35	chr3L:2030825-2030881 -	42.05	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TTGACGTGATAACAGGTGAGTCGAGATGAGATTAGGATAATTTAAAATGTCAATTAA--------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
39	chrX:9185990-9186077 -	40.59	TGGACATACTAAATGGTGAGTCT--------CTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TCAATCTGTGAACTATCAGATACCCTCTAACTTAGAGTAGTAACCAACTACACCGTTTTCC----------CACCCATTCCAGACACCTCAATGGGCA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ...................ATACCCACTxACTTAGAGT............................................................ 18 1 1.00 1.00 0.00 0.00 0.00
2	chr2L:5066375-5066451 +	39.86	TGGACATACTAAATGGTGAGTCTCTAGGGGATTA--------GCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG GCGGTGAGCTGAATGAAGTGTTTATACTAAATCATACTTAAACTAAGCCATACTC---------------------TTTATAGAAACTGCTCTGGGTG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
38	chrX:1444715-1444806 -	36.25	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAG----CT-ATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGATATCATTGCGGAAACGGCCATGGGTGTGAA---AATTAATGCTCAGCTCCAGCCGCAATTTTCCTACGTTCAGTCGGTCACAACGTAAGTA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ...........GCGGAAAxGGCCTTGGGTG................................................................. 18 1 6.00 0.00 0.00 6.00 0.00 .......................................................................GTTCAATCGATCACAACG...... 18 1 1.00 0.00 1.00 0.00 0.00
23	chr3R:26365333-26365374 +	29.55	TGGACATACTAAATGGTGAGTCTC-------TAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATTGTTTGTGGTGAGTGTCAATGCCGCTGGGGATCGG------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .........TGTGTxGTGAGTGGCAATG..................................................................... 18 1 1.00 0.00 1.00 0.00 0.00
40	chrX_random:760185-760309 -	27.83	TGGACATACTA-----------------AATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTG---------------CAGAGGCCGTTTTGGG---TG TTGACATCCTGTTGTCTACCGCCATGGGTGTGAAGAAGCTACCGGAGGGTAACAAGAGTTTCGAATACGCCCAAGCCGTCGTCGACATGTGCGATATCATACATAAGAGGCAGGTGAAACTACTG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .............................................................CGAATACGCCCAAGCCGTCGTCGAC....................................... 25 1 2.00 0.00 0.00 2.00 0.00 ........................................................................AAGCCGTCGTCGACATGTGC................................. 20 1 2.00 0.00 0.00 2.00 0.00 .................................................................TACGCCCAAGCCGTCGTCGACAT..................................... 23 1 1.00 0.00 0.00 1.00 0.00 ............................................................TCGAATACGCCCAAGCCGTCGTCGAC....................................... 26 1 1.00 0.00 0.00 1.00 0.00 ...........................................................................................................AGGCAGGTTAAATTACTG 18 1 1.00 0.00 1.00 0.00 0.00 .......................................................................CAAGCCGTCGTCGACATGTGC................................. 21 1 1.00 0.00 0.00 1.00 0.00 .....................................................................CCCAAGCCGTCGTCGACA...................................... 18 1 1.00 0.00 0.00 1.00 0.00 ...............................................GGTAAAAAGAGTTTCGAGT........................................................... 19 1 1.00 1.00 0.00 0.00 0.00 .............................GTGAAGAAGCTACCGGAGG............................................................................. 19 1 1.00 1.00 0.00 0.00 0.00 ..................................................................ACGCCCAAGCCGTCGTCGACATGTGC................................. 26 1 1.00 0.00 0.00 1.00 0.00 ...................................................................CGCCCAAGCCGTCGTCGACA...................................... 20 1 1.00 0.00 0.00 1.00 0.00 .........................................................................AGCCGTCGTCGACATGTGC................................. 19 1 1.00 0.00 0.00 1.00 0.00 ................................AAGAAGCTTCCGGAGGGT........................................................................... 18 1 1.00 0.00 1.00 0.00 0.00
26	chrX:1450011-1450058 +	17.38	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGAC-TTGCAGAGGCCGTTTTGGGTG TGGT-----------------------GGGTTTGGCTG--------------------CCCTAGACATCATCACCGAAACTGCTATGGGCG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .....................................G--------------------CCGTAGACATGATCACC................ 18 1 1.00 0.00 1.00 0.00 0.00

droSec1 - 10 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
15	super_1:9333409-9333498 +	94.52	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATACTAAATGGTGAGTCTTTAGGGGATTAGCAAGCCATAATTCCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......................................................TAATCCCTGAACGACTTGCAGT.............. 22 1 226.00 134.00 70.00 22.00 ...............GTGAGTCTTTAGGGGATTAGC...................................................... 21 1 39.00 19.00 18.00 2.00 ......................................................TAATCCCTGAACGACTTGCAG............... 21 1 38.00 24.00 8.00 6.00 ......................................................TAATCCCTGAACGACTTGCAGA.............. 22 1 17.00 14.00 3.00 0.00 .......................................................AATCCCTGAACGACTTGCAGT.............. 21 1 14.00 7.00 5.00 2.00 ......................................................TAATCCCTGAACGACTTGCA................ 20 1 7.00 4.00 0.00 3.00 ......................................................TAATCCCTGAACGACTTGCAGTT............. 23 1 4.00 3.00 0.00 1.00 .......................................................AATCCCTGAACGACTTGCAG............... 20 1 3.00 1.00 1.00 1.00 ...............GTGAGTCTTTAGGGGATTAG....................................................... 20 1 3.00 2.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGCGGT.............. 22 1 2.00 1.00 1.00 0.00 ......................................................TAATTCCTGAACGACTTGCAGT.............. 22 1 2.00 1.00 1.00 0.00 .......................................................AATCCCTGAACGACTTGCAGTT............. 22 1 2.00 0.00 2.00 0.00 ...............GTGAGTCTTTAGGGGATTAGCA..................................................... 22 1 2.00 0.00 2.00 0.00 ...............GTGAGTCTTTAGGGGATTACC...................................................... 21 1 1.00 1.00 0.00 0.00 .......................................................AATCCCTGAACGACTTGCAGTA............. 22 1 1.00 1.00 0.00 0.00 ......................................................TAATCCCTGAACGATTTGCAGT.............. 22 1 1.00 0.00 1.00 0.00 ...............GTGAGTCTTTAGGGGATTAGCT..................................................... 22 1 1.00 1.00 0.00 0.00 ........................................................ATCCCTGAACGACTTGCAGAGA............ 22 1 1.00 1.00 0.00 0.00 ......................................................TAATCCCTGAACGACTTGTAGA.............. 22 1 1.00 1.00 0.00 0.00 .......................................................TATCCCTGAACGACTTGCAGT.............. 21 1 1.00 0.00 0.00 1.00 ........................................................ATCCCTGAACGACTTGCAGAT............. 21 1 1.00 0.00 0.00 1.00 ............................................ATTCCTCACTTAATCCCTGAACGACTTG.................. 28 1 1.00 0.00 1.00 0.00 ......................................................CAATCCCTGAACGACTTGCAGT.............. 22 1 1.00 1.00 0.00 0.00 ......................................................TAATCCCTGAACGGCTTGCAG............... 21 1 1.00 0.00 1.00 0.00 ...............GTGAGTCTTTAxGGGATTAGC...................................................... 20 1 1.00 0.00 1.00 0.00 .....................................................TTAATCCCTGAACGACTTGCAG............... 22 1 1.00 1.00 0.00 0.00 ........................................................ATCCCTGAACGACTTGCAGT.............. 20 1 1.00 0.00 1.00 0.00 ......................................................TAATCCCTGAACGACTTGTAGT.............. 22 1 1.00 1.00 0.00 0.00 ......................................................TAATCACTGAACGACTTGCAGT.............. 22 1 1.00 0.00 0.00 1.00 .....................................................TTAATCCCTGAACGACTTGCAGT.............. 23 1 1.00 0.00 1.00 0.00 ......................................................TAATCTCTGAACGACTTGCAGT.............. 22 1 1.00 0.00 1.00 0.00 ...............GTGAGTCTTTAGGGGATT......................................................... 18 1 1.00 0.00 1.00 0.00 ........................................................ATCCCTGAACGACTTGCAGTT............. 21 1 1.00 0.00 0.00 1.00 ...............GTGAGTCTTTAGGGGATTCG....................................................... 20 1 1.00 1.00 0.00 0.00 ...............GTGAGTCTTTAGGGGATTA........................................................ 19 1 1.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGGAGT.............. 22 1 1.00 1.00 0.00 0.00 ......................................................TAATCCCTGAATGACTTGCAGT.............. 22 1 1.00 0.00 1.00 0.00 ......................................................TAATCCCTGAACGACTTGAAG............... 21 1 1.00 1.00 0.00 0.00 .....................................................TTAATCCCTGAACGACTTG.................. 19 1 1.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTTCAGT.............. 22 1 1.00 0.00 0.00 1.00 ...............GTGAGTCTTTAGGGGATTAGCC..................................................... 22 1 1.00 0.00 1.00 0.00 ......................................................TAATCCCTGAACAACTTGCAGT.............. 22 1 1.00 0.00 1.00 0.00
30	super_3:5196496-5196572 -	45.65	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTT--GCAGAGGCCGTTTTGGGTG CGGAGACACTA--TCATTGATTTCCAGGAGCATGCCAA-CTAC-----CTTA------CTTTGGATGTCATCTGC-GACACGGCAATGGGAG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ........................................TAC-----CTTA------CTTTGGATGTCATCTGC-................ 24 1 1.00 0.00 1.00 0.00
1	super_0:17383172-17383251 +	43.43	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGAAGCAGCTTGCCGTAGGTATTCATGGGTC--------TTCAATTGCCTATATTTTACGGGAATTACTTGCAGAGACAACGATGGG-- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
29	super_2:2499131-2499187 -	40.91	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TTGACGTGATAACAGGTGAGTCGAGATGAGATTAGGATAATTTAAAACGTCAATTAA--------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ....................TGGAGATGAGATTGGGAT.................................................... 18 1 1.00 0.00 1.00 0.00
3	super_1:1974891-1974989 +	37.38	TGGA------------CATACTAAATGGTGAGTCTC-TAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACG-AC--TTGCAGAGGCCGTTTTGGGTG TGGATGTTATTTGCGACACAGCGATGGGTGTGTCCATCAATGCAATGGAAAACCGCAGCTCGTCCA-------TTGTACAGGCCTTCAAAGAGTTAGTTTCGTACT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......TTATTTGCGACACAGCGATGGGTGTGT......................................................................... 27 1 1.00 0.00 1.00 0.00 ..........................................................................TGTGCAGGCCTTTAAAGA.............. 18 1 1.00 0.00 1.00 0.00 .............................GTGTCCATCAATGCAATGG.......................................................... 19 1 1.00 0.00 1.00 0.00 .....................................CAATGCAATGGAGTACCGC.................................................. 19 1 1.00 0.00 0.00 1.00 ...............................................GAAAACCGCAGCTCGTCCA-------TT............................... 21 1 1.00 0.00 1.00 0.00 ............................................................CGTCCA-------TTGTCAAGGCCT..................... 18 1 1.00 0.00 1.00 0.00 ........ATTTGCGACACAGCGATGGGTGT........................................................................... 23 1 1.00 1.00 0.00 0.00 ................................................AAAACCGCAGCTCGTCCA-------TT............................... 20 1 1.00 0.00 1.00 0.00 ...........................................................................GTACAGGCCTTCAAAGATAT........... 20 1 1.00 0.00 1.00 0.00
39	super_53:142511-142585 -	36.53	TGGACATACTAAATGGTGAGTCTC-----TAGGGGATTAGCAAGCTATAA---TTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TAT----------CAGATACCCTCTAACTTAGAGTAGTAACCAACTACACCGTTTTCCCACCCAT-------------TCCAGACACCTCAATGGGCG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
35	super_10:1852001-1852092 -	36.25	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAG----CT-ATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGATATCATTGCGGAAACGGCCATGGGTGTGAA---AATTAATGCTCAGCTCCAGCCGCAATTTTCCTACGTTCAGTCGGTCACAACGTAAGTA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...........GCGGAAAxGGCCTTGGGTG................................................................. 18 1 205.00 1.00 2.00 202.00 .........TTGCGGAAAxGGCCTTGGGT.................................................................. 19 1 4.00 3.00 0.00 1.00 ...........GCGGAAAxGGCCTTGGGTGT................................................................ 19 1 2.00 1.00 0.00 1.00 ...........GCGGxAACGGCCTTGGGTG................................................................. 18 1 1.00 0.00 0.00 1.00 .........TTGCGGAAACxGCCTTGGGT.................................................................. 19 1 1.00 1.00 0.00 0.00 ...............AAACGACCATGGATGTGA.............................................................. 18 1 1.00 0.00 1.00 0.00 ...............AAACGACAATGGGTGTGA.............................................................. 18 1 1.00 0.00 1.00 0.00 ..........TGCxGAAACCGCCATGGGTGT................................................................ 20 1 1.00 0.00 1.00 0.00 ..........TGCGGAAAxGGCCTTGGGT.................................................................. 18 1 1.00 1.00 0.00 0.00 ...............AAACGGCAATGGATGTGA.............................................................. 18 1 1.00 0.00 1.00 0.00
17	super_4:5549426-5549467 +	29.55	TGGACATACTAAATGGTGAGTCTC-------TAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATTGTTTGTGGTGAGTGTCAATGCCGCTGGGGATCGG------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
21	super_10:1855083-1855230 +	22.1	TGGACATACTAAATGGTGAGTCT------------------------------------CTAGGGGATTAGCAAGCTATAATTTCTCAC---------TTAAT--------------------CCCTGAACGACTTGCAGAGGCCGTTT-----TGGGTG TGGATATAATCGCAGGTGAGTTTGCCATCACTCTAATAAATATTTATAATAGCTTAATATTCGCCGTTTAGAAACTGCA----------ATGGGCACAAAAATCAATGCCCAAAAAAATCCCAATCTG--CCCTATGTCCAGGCTGTCAATGAGTGAGTG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
19	super_5:3344966-3344986 +	15.91	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG T---------------------------------------------------------------------TATAGAAACTGCTCTGGGTG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head		None

droYak2 - 15 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
37	chr2R:17148711-17148800 -	92.35	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATACTGAATGGTGAGTCTCTAGGGGATTAGCAAGCCATGATTCCTCCCTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ......................................................TAATCCCTGAACGACTTGCAG............... 21 1 48.00 0.00 3.00 5.00 0.00 40.00 ......................................................TAATCCCTGAACGACTTGCAGT.............. 22 1 24.00 4.00 0.00 8.00 2.00 10.00 ......................................................TAATCCCTGAACGACTTGCA................ 20 1 8.00 0.00 0.00 1.00 0.00 7.00 .....................................................TTAATCCCTGAACGACTTGCAG............... 22 1 6.00 0.00 0.00 0.00 0.00 6.00 ...............GTGAGTCTCTAGGGGATTAGC...................................................... 21 1 5.00 3.00 0.00 2.00 0.00 0.00 ......................................................TAATCCCTGAACGACTTGCAGTT............. 23 1 5.00 1.00 0.00 2.00 0.00 2.00 ........................................................ATCCCTGAACGACTTGCAG............... 19 1 3.00 0.00 0.00 0.00 0.00 3.00 ......................................................TAATCCCTGAACGACTTGCAGA.............. 22 1 3.00 0.00 1.00 0.00 0.00 2.00 ......................................................TAATCCCTGAACGACTTGCAC............... 21 1 3.00 0.00 0.00 0.00 0.00 3.00 ........................................................ATCCCTGAACGACTTGCAGT.............. 20 1 3.00 0.00 0.00 1.00 0.00 2.00 .......................................................AATCCCTGAACGACTTGCAGT.............. 21 1 3.00 0.00 0.00 2.00 0.00 1.00 ..................................................................................TTTGGCTG 16 2 1.00 0.00 0.00 0.00 1.00 0.00 ....................................................CTTAATCCCTGAACGACTTGCAG............... 23 1 2.00 0.00 0.00 0.00 0.00 2.00 ...............GTGAGTCTCTAGGGGATTA........................................................ 19 1 2.00 0.00 0.00 2.00 0.00 0.00 .......................................................AATCCCTGAACGACTTGCAGTT............. 22 1 2.00 0.00 0.00 0.00 0.00 2.00 .....................................................CTAATCCCTGAACGACTTGC................. 20 1 2.00 0.00 0.00 0.00 0.00 2.00 .....ATACTGAATGGTGAGTCTCTAGGGGATT......................................................... 28 1 1.00 0.00 0.00 1.00 0.00 0.00 ....................................................CTTAATCCCTGAACGACTTGCAGT.............. 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGC................. 19 1 1.00 0.00 0.00 0.00 0.00 1.00 .......................................................AATCCCTGAACGACTTGCAG............... 20 1 1.00 0.00 0.00 0.00 0.00 1.00 .................................................TCCCTTAATCCCTGAACGACTTGC................. 24 1 1.00 0.00 0.00 1.00 0.00 0.00 ...................................................CCTTAATCCCTGAACGACTTGC................. 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ..................................................CCCTTAATCCCTGAACGACTTGCCGA.............. 26 1 1.00 0.00 0.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGCAGC.............. 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGCC................ 20 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GGGAGTCTCTAGGGGTTT......................................................... 18 1 1.00 0.00 0.00 0.00 1.00 0.00 ...................................................CCTTAATCCCTGAACGACTTGCAG............... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ........................................................ATCCCTGAACGACTTGCAGTT............. 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ....................................................CTTAATCCCTGAACGACTTGC................. 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGCAGG.............. 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTGAGTCTCTAGGGGATT......................................................... 18 1 1.00 1.00 0.00 0.00 0.00 0.00 ........................................................ATCCCTGAACGACTTGCAGTA............. 21 1 1.00 0.00 0.00 0.00 0.00 1.00
22	chrX:1928459-1928540 +	48.66	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG GTGAGCTGGAAAACGTAGATCATTT--GATATAAGTAAGTTGTAACTGATCG----A-TCCTGATCGATT-TTAGACACCTCCATGGGCG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
15	chr3L:9464035-9464106 +	47.73	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TTGACGTGATAACAGGTGAGTCGCGAAGAGATTAAGATATTTTACAACTTCAATTAAAACACATTAGACTTG------------------ Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
43	chrX:6252334-6252423 -	46.42	TGGACATACTAAATGGTGAGTCTCTAGGGGATTA-GCAAGCTATAAT-TTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGATATAATTGCAGGTGAGTAAT--GGCAATTACTCTAATAATTGTAGCTATACTAGTTCTATATTCGCCATTTAGAAACTGCGATGGGCA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
39	chr3R:8532959-8533040 -	42.45	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGAGGCAGCTTGTCGTGAGTATTTAC------ATGTCGTTTCAATCGTTTATATTTCATCGGCATTACTTGTAGAGACAACGATGGG-- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..........................C------ATGTCGGATCAATCGTTT....................................... 19 1 1.00 0.00 0.00 0.00 0.00 1.00
1	chr2L:16989371-16989469 +	41.78	TG-----GACATACTAAATGGTGAGTCTCTAGGGGAT-TAGCAAGCTATAATTTCTCACTTA----ATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TATTTGCGACACAGCCATGGGTGTGTCCATTAATGCCATGGAAAACCGCAACTCGTCCATTGTGCAGGCCTTTAAAGAGTT-AGTATACAACTTTTGTTG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..............CCATGGGTGTGTCCATTAATGCCAT............................................................. 25 1 1.00 1.00 0.00 0.00 0.00 0.00
45	chrX:9200477-9200568 -	40.23	TGGACAT-----ACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTT-------GCAGAGGCCGTTT-----TGGGTG TGGACGCCATCTGCGAAACGGCC------ATGGGCATCAAGAAGC---------ACGCCCAGCTGCAGAGCGACTCCGAATATGTGCAAGCTGTTCAATCGTAAGTA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...................................................................GAGCGACTCCGAATATGTGC.................... 20 1 1.00 0.00 0.00 1.00 0.00 0.00 .........TCTGCGAAACGGCC------ATGGGC........................................................................ 20 1 1.00 0.00 0.00 0.00 0.00 1.00 ..................................CATCCAGCAGC---------ACGCCCAGC............................................ 20 1 1.00 0.00 0.00 1.00 0.00 0.00
42	chrX:6250202-6250294 -	39.74	TGGACATACTA------------------------------------------------------AATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGTAGGTTTGGCTGCCCTGGACATCATCACCGAAACTGCTATGGGCGTAAGTGTGGGCGCTCAAGGAGGTGACT---------------------------------------------------CCGAGGTGGTGCACGCTG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
30	chr2L:13933568-13933685 -	35.77	TGGAC-------------------------------ATAC--TAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGAACTTAACCAGGTTATTCCGCCATTCACTTTGAATAATATATGCGGTAAGCT--AAAGCGATCAC-ATCTAATTACATTTATACTAATT--CATACCATTTACAGAAACTGCTCTGGGAG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
27	chr2L:12437582-12437682 -	34.06	TGGACATACTAAATGGTGAGTCTCTAGGGGAT-------------TAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGG--GTG TGGATGTGATCTGCGACACGGCGATGGGAGTGCCCATCAATGCCATGGAGCAGCGCGACTCCTCCATTG----TTCAGGCATTCAGAGAGTGAGTTTTGGAAATA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
41	chrX:289433-289509 -	31.82	TGGACATACT---------------------------AAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG CAGACCACCGTCGACATCCTGTTGTCCACCGCCATGGGTGTGAAGAAGCTCCCGGAGGGCAACAAG----------------------------------------AGTTTCGAATA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...............................CCCTGGGTGTGAAGCAGCT................................................................... 19 1 3.00 0.00 1.00 2.00 0.00 0.00 .......................................GTGAAGAAGCTCCCGGAGGGCAACA..................................................... 25 1 2.00 0.00 0.00 2.00 0.00 0.00 .......................................GTGAAGAAGCTCCCGGAGGGC......................................................... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ..................CTGCTGTCCACCGCGATGGGTGT............................................................................ 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ..............................................AGCTCCCGGAGGGCAACAAG----------------------------------------AGTTTCGAAT. 30 1 1.00 0.00 0.00 1.00 0.00 0.00 .............................CGCCATGGGTGTGAAGAAG..................................................................... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................TGAAGAAGCTCCCGGAGGGCA........................................................ 21 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................GTGAAGAAGCTCCCGGAGG........................................................... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ....................................GGTGTAAAGAAGCTCCCGGAGGGCAACA..................................................... 28 1 1.00 0.00 0.00 1.00 0.00 0.00 .................................ATGGGTGTGAAGAAGCTCCCGGAGGGCA........................................................ 28 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................GTGAAGAAGCTCCCGGAGGGCAACAAG----------------------------------------A.......... 28 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................GTGAAGAAGCTCCCGGAGGGCAA....................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................GTGAAGAAGCTCCCGGAGGGCA........................................................ 22 1 1.00 0.00 0.00 1.00 0.00 0.00 .........................................GAAGAAGCTGCTGGAGGG.......................................................... 18 1 1.00 0.00 1.00 0.00 0.00 0.00 ...................................................CCGGAGGGCAACAAG----------------------------------------AGTTTC..... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 .................................ATGGGTGTGAAGAAGCTCCCGGAGG........................................................... 25 1 1.00 0.00 0.00 1.00 0.00 0.00 .....................................GTGTGAAGAAGCTCCCGGAGGGC......................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00
23	chrX:6255451-6255522 +	30.91	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG------------------------------------------ TGGACATC------------------------------------------------------------ATTGCGGAAACGGCCATGGGTGTAAAAATTAATGCTCAGCTCCAGCCGCAGTTCTCCTACGTTC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .......................................................................GCGGAAAxGGCCTTGGGTG.......................................... 18 1 4.00 0.00 1.00 0.00 3.00 0.00 .......................................................................GCGGAAAxGGCCTTGGGT........................................... 17 1 1.00 0.00 0.00 0.00 1.00 0.00		None
24	chrX:6270075-6270203 +	27.29	TGGACATACT------------------AAATGGTGAGTCTCTAGGGGATTAGCAAGCTATA-----------------------------ATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TAGGCCTTCGATTTTGTTTTCATTTCTAAAATGGTGGTGCTCTGGAGATTGGGCTCTTTATCGGGATATTGGTGTGGTTATGAAAGTTTTGATA--------GCATTCCGGCTTTTTTCCAGAGACCGCCATGGGTG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ................................................TTGGGCTCTTxxTCGGGATA..................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 0.00
20	chr3R:27647883-27647906 +	20.45	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATTGTTTGTGGTGAGTGTC------------------------------------------------------------------ Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..GACAGTGTTTGTGGTGAGT..................................................................... 19 1 1.00 1.00 0.00 0.00 0.00 0.00
47	chrX:10779728-10779748 -	17.05	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGAGATTCTATTGGGTAAGT--------------------------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head		None

droEre2 - 12 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
32	scaffold_4845:14024563-14024652 -	92.35	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCCATATTTCCACACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGAG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ......................................................TAATCCCTGAACGACTTGCAGT.............. 22 1 9.00 0.00 0.00 0.00 9.00 ......................................................TAATCCCTGAACGACTTGCAG............... 21 1 7.00 1.00 0.00 0.00 6.00 ...............GTGAGTCTCTAGGGGATTAGC...................................................... 21 1 5.00 0.00 1.00 0.00 4.00 ...............GTGAGTCTCTAGGGGATT......................................................... 18 1 3.00 0.00 0.00 0.00 3.00 ...............GTGAGTCTCTAGGGGATTA........................................................ 19 1 2.00 2.00 0.00 0.00 0.00 .......................................................AATCCCTGAACGACTTGCAGT.............. 21 1 2.00 0.00 0.00 0.00 2.00 .................................................ACACTTAATCCCTGAACGACTTG.................. 23 1 1.00 0.00 1.00 0.00 0.00 ......................................................TAATCCCTGAACGACTTGCAGTT............. 23 1 1.00 0.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGCAGA.............. 22 1 1.00 0.00 1.00 0.00 0.00 ......................................................TAATCCCTGAACGACTTGCA................ 20 1 1.00 0.00 0.00 0.00 1.00 ......................................................TAATCCCTGAAAGACTTGCAG............... 21 1 1.00 0.00 0.00 0.00 1.00 ......................TCTAGGGGATTAGCAAGCCA................................................ 20 1 1.00 0.00 0.00 0.00 1.00 ......................................................TAATCCCTGAACGACTTGAAGT.............. 22 1 1.00 0.00 0.00 0.00 1.00 ...............GTGAGTCTCTAGTGGATTAGC...................................................... 21 1 1.00 0.00 0.00 0.00 1.00 .....................................................TTAATCCCTGAACGACTTGCAG............... 22 1 1.00 0.00 0.00 0.00 1.00 ........................................................ATCCCTGAACGACTTGCAGT.............. 20 1 1.00 0.00 0.00 0.00 1.00
1	scaffold_4644:2034560-2034645 +	50.99	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGATATAATTGCAGGTGAGATTGCC----ATTACTCTGATAATTACTTATACTAGTTCAATATTCGCCATTTAGAAACTGCGATGGGCA Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..............GGTAAGATTGCC----ATTACTA..................................................... 19 1 1.00 1.00 0.00 0.00 0.00
4	scaffold_4770:17117292-17117372 +	46.02	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGAAGCAGCTTGCCGTGAGTATTTACATG-------GGCCTCAATCGTTTATATTTCAAAGGAATTACTTGCAGAGACCACGATGGG-- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
14	scaffold_4929:5348074-5348141 +	41.44	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAA-------TTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG -----------------------------GATCATCTAGTTATAAAATATTATTATATTACTAACTACAAATTATTTTATAGAAACGGCCCTGGGCG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
3	scaffold_4690:14899091-14899195 +	39.11	TGGACATACTAAATGGTGAGTCTCTAGGGG----------ATTAGCAAGC--TATAATTTCTCACTTAATCCCTGAACGAC---TTGCAGAGGCCGTTTTGGGTG CTCATAGACGCCATTGTGGGTGAGTTGGAGAACGAAGTAGATTAATAATTGATACAAGTAGTAACCATACTGTTTACCTACCCATTTCAGACACCTCCATGGGCG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
20	scaffold_4644:310117-310207 -	38.33	TGGACATACTA-----------------AATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TTGACATCCTGTTGTCTACCGCCATGGGTGTGAAGAAGCTGCCGGAGGGTAACAAGAGTTTCGAATACGCTCAAGCCGTCGTCGACATGTG---------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..............................................GGGTAAATAGAGTTTCGA........................................... 18 1 1.00 1.00 0.00 0.00 0.00 .....................CCCTGGGTGTGAAGCAGCT................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 ..............................................GGGTAACTAGAGTTTCTA........................................... 18 1 1.00 0.00 0.00 0.00 1.00 .............................GTGAAGAAGCTGCCGGAG............................................................ 18 1 1.00 0.00 0.00 0.00 1.00 ...............................GAAGAAGCTGCTGGAGGCT......................................................... 19 1 1.00 1.00 0.00 0.00 0.00
43	scaffold_4929:18304927-18305032 -	36.98	TGGACATACTAAAT------------GGTGAGTCTCTAGGGGAT-TAGCAAGCTATAATTTCTCACTTA----ATCCCTGAACGACTTGC---AGAGGCCGTTTTGGGTG TGGACGTTATTTGCGATACAGCGATGGGCGTGTCCATCAATGCCATGGAAAACCGCAGCTCTTCCATTGTGCAGGCCTTTAATGAGTTAGTTCAG----AGCTTTAGTTG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .....GTTATTTGCGATACAGCGAT..................................................................................... 20 1 1.00 0.00 0.00 0.00 1.00 ....CGTTATTTGCGATACAGCGATGG................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ..................................................................TTGTGCAGGCCTTTAATGA......................... 19 1 1.00 1.00 0.00 0.00 0.00
22	scaffold_4644:2031562-2031653 -	36.25	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAG----CT-ATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGATATCATTGCGGAAACGGCCATGGGTGTGAA---AATTAATGCTCAGCTCCAGCCGCAATTTTCCTACGTTCAGTCGGTCACAACGTAAGTA Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ...............AAACGGCAATGGATGTGA.............................................................. 18 1 1.00 0.00 0.00 0.00 1.00
28	scaffold_4820:1264873-1264988 -	30.09	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTA----------------ATCCCTGAACG----ACTTGCAGAGGCCGTTTTG-----------GGTG TGGTATTGCTAAACTACTTGTATTTAGAAGACCAGCAAAGCGT-----TTCATTTGGAAACGAAAGAAAACTGCCCTTGAACTTTGCGTTTACAAGTGTTGTTTTCCTTCCCGCAGCATTG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
21	scaffold_4644:2017650-2017777 -	27.39	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATC-------------------CCTGAAC-------------------GACTTGCAGAGGCCGTTTTGGGTG TGGACACGATTTGCGGTAGGGATCTAGGCCATGAATTTGCTTTCATTTACAAAATGGTAGTGCTTTGGAGATTGGGCTCTTCATCGGGATCTTGGTGTGGTCTTCTTTTCCAGAGACTGCCATGGGTG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .....................................................................GATTGGGCTCTTCATCGGGAT...................................... 21 1 1.00 1.00 0.00 0.00 0.00
24	scaffold_4690:3782355-3782375 -	17.05	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGAGATTCTATTGGGTAAGT--------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head		None
15	scaffold_4929:18187061-18187061 +	1.14	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG G----------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head	None	None

droFic1 - 13 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
17	scf7180000453948:1083547-1083638 +	70.7	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTT---CTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATACTAAATGGTGAGTCTCTAGGAGATTTATAAGCCCCATTTCAATCCCTAATAATACTTGA-CCATTTTTAGAGGCCGTTTTGGGTG Size Hit Count Total Norm
9	scf7180000453812:1034396-1034492 +	44.91	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTC--TCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGG------GTG TTAGAATAGCCACTCGTGAGTGAAGA-ATAATCAAAATACTATGATTTACTTCTGTTAATAAATTATTTCTTTACAGAAACCACAGTGGGGACCGATG Size Hit Count Total Norm
40	scf7180000453851:2006016-2006092 -	44.7	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACG--ACTTGCAGAGGCCGTTTTGGGTG CGGAGACAGTATC-TTCGAC-TTCCAG--GATCAGG----CTCA-----CTATCTCACCTTGGA-TGTTATTTG-CGATACAGCGATGGGGG Size Hit Count Total Norm
45	scf7180000454072:3190514-3190605 -	42.29	TGGACATACTAAATGGTGAGTCTC-----TAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATCATTGCGGAAACGGCCATGGGCGTGAGGATTAATGCG---CAGCTGCAGCCGCAGTTTTCCTACGTCCAGTCGGTGACAACGTGAGTA Size Hit Count Total Norm
31	scf7180000453842:977197-977246 -	37.5	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGA--ACGACTTGCAGAGGCCGTTTTGGGTG T------------------------------------------AATTTTTAATTTAATTTTTAAAAATCGTTTGCAGAAACCGCATTAGGTG Size Hit Count Total Norm
18	scf7180000454072:3193706-3193812 +	37.45	TGGACATACT-------------------AAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTT----------GCAGAGGCCGTTTTGGGTG TGGATATAATTGCAGGTCTGTAAACCAGTTGATGGCATAACGCTTGGAGG------------GATTTCTCCTCTTATTTCAATACGTCTTCCCCTCGCCCATAGAAACTGCGATGGGCA Size Hit Count Total Norm
19	scf7180000454072:3195817-3195889 +	36.97	TGGACATACTAAATGGTGAGTCTCT-AGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGG-TG TGGACATTATAACCGAAA--CCGCGATGGGGGTTAGTGTGCG-----------------CGCCCAAGGAGACGAGGATTCCGAGGTGGTTCA Size Hit Count Total Norm
1	scf7180000453778:454461-454522 +	35.23	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG GG--------------------------AGACCAAGGAGCTGTG--TGCTCTTTTCACCACCGATGTAGTTGCCACCGTGGCCTACGGGG Size Hit Count Total Norm
3	scf7180000453778:465094-465155 +	35.23	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG GGAGGCCAAGGAGCTGTG----------------------------TGCTCTTTTCACCACCGAAGTGATTGCTACCGTGGCTTACGGGG Size Hit Count Total Norm
44	scf7180000454072:3176154-3176260 -	29.78	TGGACATACTAAATGGTGAG--------------------------TCTCTAGGGGATTAGCAAGCTATAATTT-------CTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACACGATCTGCGGTAGGAATTCGCTCGTCCTCTGCCGGATAAACCTTCGGTGCACCCGCGGACCAGGGCTCAGGTTTCCTCAGTTTTTGC------------TGGCAAACACTTC----G Size Hit Count Total Norm
27	scf7180000453782:571950-571977 -	21.59	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGACATTGTTTGCGGTGAGTGTCAA--------------------------------------------------------------TG Size Hit Count Total Norm
13	scf7180000453872:195834-195854 +	17.05	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TGGAGATTCTATTGGGTAAGT--------------------------------------------------------------------- Size Hit Count Total Norm		None
33	scf7180000453842:981684-981703 -	14.77	TGGACATACTAAATGGTGAGTCTCTAGGGGATTAGCAAGCTATAATTTCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG TA----------------------------------------------------------------------TAGAAACTGCTTTGGGCG Size Hit Count Total Norm		None