Possible Orthologs for dme-mir-4914

droSim1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:2697912-2698035 +

94.42

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC AGACGAGCCCACAACGTGAGTGAGAGCGAGTTTCATTGTGGTCCTCGAAACCAGTTGCGCTCCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGCTTGGACAGCTC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................CGAGTTTTATTGTGGGCC................................................................................	18	1	51.00	0.00	14.00	4.00	33.00
..........................CGAGTGTCATTGTGGGCC................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..........................CGAGTGTTATTGTGGTCC................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................GCGAGTTTTATTGTGGGCC................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
............................................................TCCGxTCAGATTGCAAAAT.............................................	18	1	1.00	0.00	1.00	0.00	0.00
............................ATTTTCATTGTGGTCGTC..............................................................................	18	1	1.00	0.00	0.00	1.00	0.00

chr2L:9731932-9732025 -

32.93

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCCACGACGTATGAGCAAATATATCCA---------------------------TTTACCAAACTGAGGAATGTCTACATCTTGGTTTCAT---TTTTTCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2R:17998023-17998193 -

31.71

AGACGAGCCCACAACGTGAGTGAG-A----------------------------------------------------GCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCA-------GATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAACCCACCACGGGCCTGGACAGCTTCAGCGCCTACTCGGTGATCAAAACACTGAGGCACTTGTGCACCAGGCGACGGATTGCCAAGCACTCCTTGA-ACCAGGTCTACGGCGAGGACTCATTCGAGACCCCGAGTGGC------------GAGAGCAGCGCCAGTGGCAGTGGCAGCAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...........CCACGGTCCTGGAGAGCT...........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

chr2L:3234368-3234455 -

31.41

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCTACAACGTATGTTATTGTGCATCAAAACGTAGCT--AAAAACTAATGA----------------------------------AATGCATATACCTTTCAGTGGCTTGGATAGTTT

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2L:119387-119472 -

31.27

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCAC--------------CCACAGCGGATTGGACAGCTC AGATGAACCTACAACGTGAGTATAAGGAAAAT----------ATTGAAAA------------------------------------------CCAAGAACTATTGTTACCACCAACTCAACAGTGGTCTTGACGACTT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.............................................................................................................CACCAACTCAAxAGTGCTC..........	18	1	1.00	0.00	0.00	1.00	0.00

chr2L:1734920-1734942 +

15.57

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCGACGACGTGAGTGA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chr2L:1736111-1736128 +

12.3

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
----------------------------------------------------------------------------------------------------------CAGTGGCCTGGACAGCTC

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chr2L:3230118-3230168 -

12.14

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC---------------------
CGATGAGCCCAC----------------------------------------------------------------------------------------------CAGCGGATTGGATTGTGTGGGCAGCTACCAGGTGATTTG

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chr3L:15834602-15834648 +

10.56

AGACGAGCCCACAACGTGAGTGA-------GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAGCCCACCACGGGACTGGACTCATACAGCG----------------------------------------------------------------------------CCCAGCAGCTGG--------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..............CGGGACTGGACTCATACAG..................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

chr2L:4264582-4264611 +

4.96

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAACCCACCTC----------------------------------------------------------------------------------------------CGGACTGGACAGCTC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......CCCACGTC----------------------------------------------------------------------------------------------CGGCCTGGAC.....	18	2	1.00	0.00	1.00	0.00	0.00
.....AACCCACCTC----------------------------------------------------------------------------------------------CGGACTGGACAGC..	23	1	2.00	0.00	0.00	0.00	2.00
......ACCCACCTC----------------------------------------------------------------------------------------------CGGACTGGACAG...	21	1	1.00	0.00	0.00	0.00	1.00
......GGCCACCTC----------------------------------------------------------------------------------------------CGGACTGGA......	18	1	1.00	0.00	1.00	0.00	0.00
......ACCCACCTC----------------------------------------------------------------------------------------------CGGACTGGACAGCT.	23	1	1.00	0.00	1.00	0.00	0.00
..ACGAACCCACCTC----------------------------------------------------------------------------------------------CGGACT.........	19	1	1.00	0.00	0.00	0.00	1.00

None

chr2L:125459-125488 -

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC TGACGAACCCACGTC----------------------------------------------------------------------------------------------CAGCCTGGACAGCTC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......CCCACGTC----------------------------------------------------------------------------------------------CGGCCTGGAC.....	18	2	1.00	0.00	1.00	0.00	0.00
...CTAACCCACGTC----------------------------------------------------------------------------------------------CGGCCTGGACA....	23	1	1.00	0.00	1.00	0.00	0.00

None

droSec1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_5:903635-903758 +

95.21

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCATTGTGGTCCTCGAAACCAGTTGCGCTCCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGCTTGGACAGCTC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................CAGATTCTAAAATTGAAA........................................	18	1	1.00	0.00	1.00	0.00

super_14:117315-117400 -

31.27

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCAC--------------CCACAGCGGATTGGACAGCTC AGATGAACCTACAACGTGAGTATAAGGAAAAT----------ATTGAAAA------------------------------------------CCAAGAACTATTGTTACCACCAACTCAACAGTGGTCTTGACGACTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..............CCTGAGTATAAGAAAAAT----------................................................................................................	18	1	1.00	0.00	0.00	1.00

super_5:1439358-1439445 -

30.25

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCTACAACGTATGTTATTGTGCATCAACACGTAGTT---AAAATCTAATGAA---------------------------------ATGCATATACTTTTCAGTGGCTTGGATAGTTT

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_14:1677888-1677910 +

15.57

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_9:2705806-2705833 -

13.93

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_14:1679059-1679076 +

12.3

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_0:8582665-8582714 +

11.57

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCCACCACGGGACT--------------------------------------------------------------------------GGACTCATACAGTGCCCAGCAGCTGGTGG

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_0:3821315-3821359 +

8.63

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGAC-----------AGCTC---- AGACGAACCAACCA----------------------------------------------------------------------------------------------GTGGGCTGGACGAAGTGACGGCGGCTCAGTG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............CA----------------------------------------------------------------------------------------------GTGGGCTGGACGAAGT...............	18	1	1.00	0.00	1.00	0.00
.............A----------------------------------------------------------------------------------------------GTGGGCTGGACGAAGTGACGGC.........	23	1	1.00	0.00	1.00	0.00
.................................................................................................................CTGGACGAAGTGACGGCG........	18	1	1.00	0.00	1.00	0.00
......................................................................................................................CGAAGTGACGGCGGCTCAGTG	21	1	1.00	0.00	0.00	1.00
..............................................................................................................GGGCTGGACGAAGTGACGGC.........	20	1	1.00	0.00	1.00	0.00
............CA----------------------------------------------------------------------------------------------GTGGGCTGGACGAAGTGA.............	20	1	1.00	0.00	0.00	1.00

None

super_3:5389192-5389204 -

6.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GG---------------------------------------------------------------------------------------------------------------CTGGACAGTAG

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_5:2440133-2440162 +

4.96

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAACCCACCTC----------------------------------------------------------------------------------------------CGGACTGGACAGCTC

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_14:123630-123659 -

4.76

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAACCCACGTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_5:1435145-1435174 -

4.76

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCCAC----------------------------------------------------------------------------------------------CAGCGGATTGGACTGTGT

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

droYak2 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:2732711-2732833 +

82.91

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATG--TGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTC--CGACCTTGAATCACCCACAGCGGATTGGACAGCTC AGACGAGCCCACAACGTGAGTGAGA----GGTCCATTGTGTGATCCCCAAAACCAGTTCTACTCAGATCTGATTCCAA-ATTGACACATTCTCTGACCTTGAATCACCCACAGCGGATTGGATAGCTC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................................................................................TTGACACATTCTCTGACCTTGAATCACCC...................	29	1	7.00	0.00	0.00	0.00	0.00	7.00
................................................................................TTGACACATTCTCTGACCTTGAATCACC....................	28	1	7.00	0.00	0.00	0.00	0.00	7.00
...............................................................................ATTGACACATTCTCTGACCTTGAATCACC....................	29	1	7.00	0.00	0.00	0.00	0.00	7.00
.................................................................................TGACACATTCTCTGACCTTGAATCACC....................	27	1	5.00	0.00	0.00	0.00	0.00	5.00
...............GTGAGTGAGA----GGTCCATTGTG........................................................................................	21	1	3.00	0.00	0.00	2.00	1.00	0.00
...........................................................................................TCTGACCTTGAATCACCCACAG...............	22	1	2.00	0.00	0.00	0.00	0.00	2.00
...............GTGAGTGAGA----GGTCCATTGTGT.......................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
...........................................................................................TCTGACCTTGAATCACCC...................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
......................................................................................................ATCACCCACGGCGGATTGC.......	19	1	2.00	0.00	0.00	0.00	0.00	2.00
........................................................................................TTCTCTGACCTTGAATCACCC...................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
....................................................................CTGATTCCAA-ATTGACACATTCTCTGACC..............................	29	1	2.00	0.00	0.00	0.00	0.00	2.00
................................................................................TTGACACATTCTCTGACCT.............................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................ATTGACACATTCTCTGACC..............................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................TGACACATTCTCTGACCTTGAATCACCA...................	28	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................TTCCAA-ATTGACACATTCTCTGACCTT............................	27	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTGAGTGAGA----GGTCCATTGTGTGATC...................................................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTGAGTGAGA----GGTCCATTGTGTGAT....................................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
AGACGCGCCGACAACGTG..............................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................ATTGACACATTCTCTGACCTTGAA.........................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................ATTGACACATTCTCTGACCTTGAAT........................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................TTCCAA-ATTGACACATTCTCTGACCT.............................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................................ATTCTCTGACCTTGAATCACCCAC.................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTGAGTGAGA----GGTCCATTGT.........................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................................CATTCTCTGACCTTGAATCACCC...................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................TGATTCCAA-ATTGACACATTCTCTGACC..............................	28	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................................TCTGACCTTGAATCACCCACAGT..............	23	1	1.00	0.00	0.00	0.00	0.00	1.00

chr2L:3281286-3281383 -

41.13

AGACGAGCCCACAACGTGAGTGA--GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTG-ACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGACGAACCTACAACGTATGTTATGGAGCAATATCA-AC----------------------------ACTTATTCAAAAACTAATCACGAATGAACCTTGTATACTTTTCAGTGGCTTGGATAGTTC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................ATTGAGCAATAACA-AC----------------------------ACT.........................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................TTTCAGTGCCTGGGATA....	17	1	1.00	0.00	0.00	0.00	1.00	0.00

chr2L:1715748-1715906 +

35.78

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGT------CCTCGAAA--CCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACC-TTGAATCACC------------------------------CACAGCGGATTGGACAGCTC TGATGT-TCTTTTCTGTCAGCAAGACAGAGCTTTAATGGGGTTGTTATTCTTCAAAGGTTAGGCAGGCAGCAATTAAA---CAAAGTTGACTCATTCCGAAAGTTGAATTAATTGCCGGGTCGTTCTGGTTGTTTTTTCGGATTCCAGAGGCTTGGACAGCTC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................AAAGGTTAGGCAxGCAGCGA..........................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..................AGCAAGACAGAxCTTTAAGG.............................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

chr2L:12632975-12633066 -

34.11

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAAT-TGACACATTCCGACCTTGAATCA-CCCACAGCGGATTGGACAGCTC
GGACGAGCCCACAACGTAGGCGCATAT----------------------------------ATAATTATTTACCAAACTGTGGGATATCTATATCTTGCTTTCCTTTTCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2L:107586-107671 -

32.4

AGACGAGCCCACAACGTGAGTGA---------------GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC AGATGAACCCACAACGTGAGTATAATAAAAATATTGGAACACAAGATTTATTGTTACGCCCAA-----------------------------------------------------CCCAACAGCGGTCTTGACGATTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................TCATAAAGATATTGGAAC...................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
.....................ATCATAAAGATATTGGAAC...................................................................................................	19	1	2.00	0.00	1.00	0.00	0.00	1.00
......................TAATAAAAACATTGGAAA...................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................................................................CAACAGCGTTCTGGACGA...	18	1	1.00	0.00	0.00	0.00	0.00	1.00

chr2R:19385688-19385858 -

31.71

AGACGAGCCCACAACGTGAGTGA-----------------------------------------------------GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCA-------GATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAGCCCACCACGGGATTGGACAGCTTCAGCGCCTACTCGGTGATCAAAACATTGAGGCACTTGTGCACAAGGAGGCGGATTGCGAAGCACTCCTTGA-ACCAGGTCTACGGCGAGGACTCGTTCGAGACCCCGAGTGGCG------------AGAGCAGTGCCAGTGGCAGTGGCAGCAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..ATGAGCCCACCTCGGGACTGGA................................................................................................................................................................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
................................................................................................................................................................CATTGGCAGTGGCAGTGGC.....	19	2	0.50	0.00	0.00	0.50	0.00	0.00
.....................................................................................................................................................................CCAGTGGCAGTGGCAGCGA	19	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................................................................................GCCAGTGGAAGTGCCAGC..	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................GTAGCAGTGGCAGTGGCA....	18	8	0.13	0.00	0.13	0.00	0.00	0.00
..................................................................................................................................................................GTGGCAGTGGCAGCGGCAGC..	20	8	0.13	0.00	0.00	0.13	0.00	0.00
.................................................................................................................................................................AGTGGCAGTGGCAGTGGCA....	19	9	0.11	0.00	0.00	0.11	0.00	0.00
.................................................................................................................................................................AGTGGCAGTGGCAGCGGCAGC..	21	6	0.17	0.00	0.00	0.17	0.00	0.00
..............................................................................................................................................................AGCAGTGGCAGTGGCAGCGGCAGC..	24	4	0.25	0.00	0.00	0.25	0.00	0.00

chr2L:1714684-1714723 +

21.31

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCGACGACGTGAGTGACACTATACTACACTATG------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3L:17563916-17563962 -

10.56

AGACGAGCCCACAACGTGAGTGA-------GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAGCCCACCACGGGACTGGACTCATACAGCG----------------------------------------------------------------------------CCCAGCAGCTGG--------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..ATGAGCCCACCTCGGGACTGGA...........................................................................................................	22	3	0.33	0.00	0.00	0.33	0.00	0.00

chr3L:11662663-11662707 +

8.63

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGA-----------CAGCTC---- GGACGAACCAACCA----------------------------------------------------------------------------------------------GTGGGCTGGACGAGGTGACGGCGGCTCAGTG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
....................................................................................................................GACGAGGTGGCCGCGG.......	16	2	0.50	0.00	0.00	0.00	0.50	0.00

None

chr2L:4374676-4374705 +

4.96

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAGCCCACCTC----------------------------------------------------------------------------------------------CGGACTGGATAGCTC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..ATGAGCCCACCTC----------------------------------------------------------------------------------------------GGGACTGGA......	22	3	0.33	0.00	0.00	0.33	0.00	0.00
...CGAGCCCACCTC----------------------------------------------------------------------------------------------CGGACTGGATAGC..	25	1	1.00	1.00	0.00	0.00	0.00	0.00

None

chr2L:113766-113795 -

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATGAACCCACATC----------------------------------------------------------------------------------------------CGGCCTGGACAGTTC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

droEre2 - 13 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4929:2790150-2790269 +

83.29

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC AGACGAGCCCACAACGTGAGTGAGAG----GTCCATTGTGGTCCTTGAAACCAGTTCCGCTCGGTTCATGATGCCAGATTGACACATTCCGACCTTTAATCACCCACAGCGGATTGGACAGCTC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
AGACGCGCCGACAACGTG..........................................................................................................	18	1	4.00	0.00	0.00	0.00	4.00
......................................................................................TTCCGACCTTTAATCACCCACAGT..............	24	1	1.00	0.00	1.00	0.00	0.00
..................................................CCAGTTCCGAGCGGTTCA........................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:3328161-3328257 -

35.62

AGACGAGCCCACAACGTGAGTGAGAGCG-AGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCTACAACGTATGTTAGGGAGCAACATCAACGCGTATCGACAAACTAATTAC---------------------------TAACGAAACTCGTATC-TTTTCAGTGGCTTGGATACTTC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4845:20788478-20788547 -

35.25

AGACGAGCCCACAACGTGAGTG---AGAGCGAGTTCCAATGTGGTCCTCGAAAC-------CAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAGCCCACCACGGGATTGGACAGCTTCAGTGCCTATTCGGTGATCAAAACATTGAGGCACTTGTGC----------------------------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......GCCACCACGGGATTGGGC.............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:147897-147985 -

33.53

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCA--------CCCACAGCGGATTGGACAGCTC
AGATGAACCTACAACGTGAGTAGTA--------TAATGAAAATAT----------------------------TAAAACAGAAG-------ATTTATTGTTACGCCCAACCCAACAGTGGTCTTGACGATTT

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4929:10562553-10562644 -

32.23

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGA-----------------CCTTGAA-TCACCCACAGCGGATTGGACAGCTC
GGACGAGCCCACAACGTAGGAGCAA--------------------------------------------------ATATAGCTATTTACCAAACTGGGGGATGCTTATATCTTGCTTTCTTTTTCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4929:1787900-1787922 +

16.39

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACGACGTGAGTGA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4929:1789072-1789089 +

13.11

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4845:20788313-20788340 -

13.11

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC G------------------------------------------------------------------------------------------------AGTCTGCTGCAGGCGATGCGGGAACTC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................................................................................................TCTGCTGCAGGAGATGAGGG.....	20	1	1.00	1.00	0.00	0.00	0.00

scaffold_4929:3323904-3323954 -

12.14

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4784:17321589-17321638 -

11.24

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCCACCACGGGACTGGACTCG--------------------------------------------------------------------------TACAGTGCCCAGCAGCTGGTGG

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4784:11618553-11618590 +

6.78

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCAACCAG--------------------------------------------------------------------------TGGCCTGGACGAAGTGACGGCGG------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4929:4419582-4419611 +

4.96

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4929:154372-154401 -

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC TGATGAACCCACATC----------------------------------------------------------------------------------------------CGGCCTGGACAGTTC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....AAACCACATC----------------------------------------------------------------------------------------------CGTCCTGGACA....	21	1	1.00	1.00	0.00	0.00	0.00
.GATGAACCCACAAC----------------------------------------------------------------------------------------------CGGCAT.........	20	1	1.00	1.00	0.00	0.00	0.00

None

droFic1 - 13 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000453924:665442-665575 +

55.78

AGACGAGCCCACAACGTGAGTGA--GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAA------------------TCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTGAGTGGTGGTGAGAGGACCATTG---TCCTCGGAACCTGTTCCC-------CCCATTAAGAATCAGTTGCATTCAGACCTTGAACCCTTTCTCTTTCCATGATCCACCGCAGTGGCCTGGACAGCTC

Size

Hit Count

Total Norm

scf7180000453838:143387-143481 -

37.4

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAAT----GTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCAACAACGTAAGACCCAAAAAATTTTATATTCAATAGTTTAGGAAGTT-------------------------ATTGATA------AACCTT--CTCTCTTCCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

scf7180000449521:442-533 -

33.91

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCAACAACGTAAGACCCAAAAATTATAAATAATATTTTAA------------------------------AAAGTTATTAATAAACCTTC--TCTTTTCCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

scf7180000453924:1272725-1272812 -

31.99

AGACGAGCCCACAACGTGAGTGAGAGCGAGTT-----------------CCAATG--TGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAACCAACCACGTATGTTGATGTTAACCATATCAAATATTTAAATCTAATAAGAAGT--------------------------------------------TTA-----------CGATTTCAGTGGCTTGGATAGCTC

Size

Hit Count

Total Norm

scf7180000453904:1416383-1416468 -

30.7

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCAC-----CCACAGCGGATTGGACAGCTC
GGACGAGCCTACGACGTGAGTAC--------------------TTACGGATCAGTTACCTATTA----------AAGATTTA-------------TAAATCACCAAAACAACAGCGGCCTGGATGACTT

Size

Hit Count

Total Norm

scf7180000453839:1888808-1888845 +

16.61

AG-------------ACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATCCTGTTCTGCGATGAACCCACCACGGGA----------------------------------------------------------------------------------------------CTGGAC-----

Size

Hit Count

Total Norm

None

scf7180000453949:415707-415729 -

15.57

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACGACGTAAGTGA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000453949:414675-414692 -

13.11

Size

Hit Count

Total Norm

None

scf7180000454113:3074455-3074499 -

9.22

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAACCAACCAGT------------GGTCTGGATGAGGTGACCGCAGCCCAGTG-------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000453904:1263399-1263428 -

5.35

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000453904:1423869-1423898 -

4.96

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAACCCACTTC----------------------------------------------------------------------------------------------CGGACTGGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000454072:547657-547686 +

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCCACC----------------------------------------------------------------------------------------------TCCGGACTGGACTCCTT

Size

Hit Count

Total Norm

None

scf7180000453924:1268529-1268558 -

4.56

Size

Hit Count

Total Norm

None

droEug1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409554:3374614-3374743 -

66.36

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATC--AGATTCCAAAATTGACACATTC--CGACCTTGAAT--------------CACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTGAGTGAGA----GGTCCATTG---TCCTCGAAACCAGTTC-AATACGATCGCAG---CC-AGATTGACACATTCATTGACCTTGGATCCCTTCATTCTGATCTCCCACAGTGGATTGGACAGCTC

Size

Hit Count

Total Norm

scf7180000409711:840328-840466 -

40.33

AGACGAGCCCACAACGTGAGTGAGAGCGAG--TTCCAATGTGGTCCT-------------CG-AAACCAGTTGTGCTT---CGATCAGATTCCAAA--A----TTGACACATTCCGACCTTGAATCACCCAC-AGCGGATTGGACAGCTC
AGC--AGCTCATACTCGGATTGGTAGTGGCGATGACAAAAAGGTTCTTTCAGGTGGAGAACGGAAACGATTGGCA-TTTGCCGTTGAGCTGCTCAACAATCCAGTGATCCTGTTTTGCGATGAA---CCCACCACGGGATTGGAC-----

Size

Hit Count

Total Norm

scf7180000409554:4970391-4970481 +

36.09

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAA----AATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCCACGACGTAAGAATGAATATATATTTA--------------CCA-----------------ATCTAAGAAAGATTTACATATTCAA------TTTCTTTTCTAGTGGCTTGGACAGCAG

Size

Hit Count

Total Norm

scf7180000409554:2803102-2803189 +

33.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCCACAAGGTAAGTTAATTCATATATTTTCATGATCG--AAAACTAAT-----------------ATAAAATTTATAT-----------------TTCGCAGTGGCTTGGATAGTTC

Size

Hit Count

Total Norm

scf7180000409154:109951-110037 -

32.21

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAA---TCACCCACAGCGGATTGGACAGCTC
TGACGAACCTACAACGTGAG---------------------TTTATGAAACCAGT-------------------AAAAATAAAAATCTATAATCTCACGCCCATGCTAATAGCGGTCTGGATGATTT

Size

Hit Count

Total Norm

scf7180000407252:32797-32819 -

15.57

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCGACGACGTGAGTGA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000409787:1052422-1052443 -

13.11

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCTACAGTGGGAGTG------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000407252:31671-31687 -

10.66

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AG-----------------------------------------------------------------------------------------------------------GGGTCTGGATAGCTC

Size

Hit Count

Total Norm

None

scf7180000409711:3507002-3507046 +

8.33

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCAACCA-GTGGGCTGGATGAAGTAACAGC--GGCCCA----------------------------------------------------------------------------GTG

Size

Hit Count

Total Norm

scf7180000409154:115661-115690 -

4.96

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAACCCAC----------------------------------------------------------------------------------------------CTCCGGTCTGGACAGTTC

Size

Hit Count

Total Norm

None

scf7180000409554:1723193-1723222 -

4.76

Size

Hit Count

Total Norm

None

droBia1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302188:1736407-1736544 +

58.13

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGA-AACCAGTT--GTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAA----------------------TCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTGAGTGAGAG-GAGGTCCCTTGT--CCCCCGAAAACCTGTTCTGTG-------CAGATTCCCG-ACTGGCACATTCCGACCTTGAACCGAACCTCATGATCCCCTTGATCTCCCACAGCGGATTGGACAGCTC

Size

Hit Count

Total Norm

scf7180000301754:3871396-3871548 -

41.17

AGACGAGCCCACAACGTGAGTGA-GAGC--GAGTTCCAATGTGGT-------------------------------------------------CCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCCACGACGGGATTGGACAGCTTCAGTGCCTACTCGGTGATCAAAACATTGAGGCACTTGTGCACGAGGCGAAGGATTGCGAAGCACTCCCTGAACCAGGTCTACGGCGAGGA--CTC-------------------CTTCGA--GACCCCCAGTGGAGAGAGCAGCGC

Size

Hit Count

Total Norm

scf7180000301468:42778-42867 -

36.89

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGA----CACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCTACAACGTAAGCGGAAA----------------------AA---------TCTCAATTAG---CCAAAATGGAGATGTACATCTTAATTT----TCATTTGCAGTGGCTTGGACAGCAG

Size

Hit Count

Total Norm

scf7180000301468:1243310-1243397 +

31.39

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTT--CGATCAGATTCCAAAATTGACACATTCC----GACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCAACCACGTATGT----------------------------------TCTGCTATAAGAAAAGATATCA------TCACATTTAATGGGAACTTTAATT--TTGTAGTGGCTTGGATAGCTC

Size

Hit Count

Total Norm

scf7180000301547:156820-156903 +

28.32

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACA------CATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGACGAACCCACGACGTGAGT---------------------TTACAACAACAATT-----------------AAAAGATAAAGTAATGTTATACCAA--------TTCCATCAGTGGCCTGGATGATTT

Size

Hit Count

Total Norm

scf7180000302188:62840-62862 -

15.57

Size

Hit Count

Total Norm

None

scf7180000302188:61690-61707 -

12.3

Size

Hit Count

Total Norm

None

scf7180000302428:3615486-3615535 -

11.24

Size

Hit Count

Total Norm

scf7180000301547:150439-150468 +

5.35

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAGCCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000302261:2801492-2801521 +

5.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCCACCTCG----------------------------------------------------------------------------------------------GGACTGGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000302334:70344-70373 +

3.57

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAACCCAC----------------------------------------------------------------------------------------------CAGTGGCCTGGATGAAGT

Size

Hit Count

Total Norm

None

droTak1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415705:481727-481859 +

65.34

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAA----------------------TCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTGAGTGAGA----GGTCCATTG---TCCTCGAAACCAGTT-----TAGCTCAGCTTCCAG-ATTGACACATTCCGACCTTGAACCGAACCCCTTGACTCCCTTGATCTCCCACAGCGGATTGGACAGCTC

Size

Hit Count

Total Norm

scf7180000415667:571315-571406 +

35.27

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTG-AATCA-CCCACAGCGGATTGGACAGCTC
GGACGAGCCCACAACGTAAGAGGAATT--ATTCTAA-----TTTTCTAAACTAG---------------------------ACAAGGGTTCATTTTATATTTATTTTCCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

scf7180000413924:63520-63609 +

32.2

AGACGAGCCCACAACGTGAGTGAGAG--CGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAACCAACCACGTAGGTTATATTATGGGATTCAAA---GTTTTCGAAACTAATTGGAAATCTTTAATATTTT---------------------------------AGGGGCCTGGACAGTTC

Size

Hit Count

Total Norm

scf7180000413017:443204-443288 +

30.66

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCC-ACAGCGGATTGGACAGCTC
AGACGAACCTACGACGTGAG---------------------TTTATGAAACCAGT-----------GAAAAATAAAGATTAAT--------GTCACGCCTCATCCAACAGCGGCCTGGATGACTT

Size

Hit Count

Total Norm

scf7180000415779:162065-162087 +

15.57

Size

Hit Count

Total Norm

None

scf7180000415779:163226-163244 +

12.3

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
A---------------------------------------------------------------------------------------------------------TAGGGGTTTGGATAGCTC

Size

Hit Count

Total Norm

None

scf7180000415352:884641-884690 -

11.24

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC----
CGATGAGCCCACCACCGGACTGGA------TT----------------------------------------------------------------------CCTATAGCGC--TCAACAGCTGGTGG

Size

Hit Count

Total Norm

scf7180000414445:575703-575748 -

10.03

AGACGAGCCCACAA----CGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCAACCAGTGGCCTGGATGA-AGTGAC---------------------------------------------------------------------------------GGCCGCCCAGTGC

Size

Hit Count

Total Norm

scf7180000415779:7962-7975 -

9.02

Size

Hit Count

Total Norm

None

scf7180000413017:436890-436919 +

5.35

Size

Hit Count

Total Norm

None

scf7180000414050:35789-35818 -

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAACCCACCTCG----------------------------------------------------------------------------------------------GGACTAGACAGCTC

Size

Hit Count

Total Norm

None

droEle1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000491273:444403-444530 -

58.97

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTT--------CGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCC---------------ACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTGAGTGAGAGG-------ACTATTGTCCTCGAAACCTGTTG-GCGTAGCCCAATCGAAC-----------TGAACATAAACCAACCTTGAACCTCTTTAATTCTGATCTTAAACAGTGGTCTGGACAGTTC

Size

Hit Count

Total Norm

scf7180000491255:2932010-2932138 +

43.81

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCT---CGAAACCAGTTGTGCTTCG--ATCAGATTC---CAAAATTGACACATTCCGACCTTGAATCACCCA--CAGCGGATTGGACAGCTC
ACGCGAATTGGCAGCGGCGATGACAAGAAGGTCCTGTCGGGGGGAGAACGGAAACGATTGGCTTTCGCCGTCGAGCTGCTCAACAATCCGGTGATTCTGTTCTGCGATGAGCCGACCACGGGATTGGAC-----

Size

Hit Count

Total Norm

scf7180000491201:1379297-1379449 +

38.83

AGACGAGCCCACAACGTGAGTG---AGAGCGAGTTCCAATGTGGTCCTCGAAACCA-------GTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCG------ACCTTGAATCACCC----------------------AC----AGCGGATTGGACAGCTC
CGATGAACCCACCACGGGACTGGACAGTTTTAGTGCCTACTCGGTGATCAAAACCCTGAGGCACTTGTGCA-CGAGGAG------------GCGCATTGGGAAGCACTCCCTGAGTCACGTTTACGGCGAGGATTCGTTCGAGACAGCGAGTGGACAGAGCAGTGC

Size

Hit Count

Total Norm

scf7180000491186:2994104-2994198 -

37.05

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCCACAACGTAGGAAAAAATAGATTTTAA-GCCATCCTAG-------------------------CCAAGATATATATATTTTTCTTTT---TCTCCGCCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

scf7180000490216:35177-35265 -

34.71

AGACGAGCCCACAACGTGAGTG----AGAGCGA--------------------GTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACGACGTGAGTATATGGAGACAAATAAAAAATAAATGATTAACGTCCC------------------------------A----------------------CCCGATTCCGA-------ATAGCGGCCTGGATGATTT

Size

Hit Count

Total Norm

scf7180000491046:1990373-1990462 -

32.13

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGA----------ATCACCCACAGCGGATTGGACAGCTC
GGATGAACCAACAACGTAGGTTATTT--------------------------------------------CTTCTATATTTATACATTATAAAACTAATTGAAAACTTATTATGTTTAGGGGCCTGGATAGTTC

Size

Hit Count

Total Norm

scf7180000491273:1622278-1622300 -

15.57

Size

Hit Count

Total Norm

None

scf7180000491273:1621056-1621072 -

12.3

Size

Hit Count

Total Norm

None

scf7180000490458:267860-267889 +

4.96

Size

Hit Count

Total Norm

None

scf7180000490216:41525-41554 -

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATGAACCCACGTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000490993:2170872-2170901 -

4.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCAAC----------------------------------------------------------------------------------------------CAGCGGCCTGGACGAGGT

Size

Hit Count

Total Norm

None

scf7180000491046:1986019-1986048 -

3.97

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAACCCAC----------------------------------------------------------------------------------------------CAGTGGCTTGGATTGTGT

Size

Hit Count

Total Norm

None

droRho1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000766156:89923-90047 -

66.55

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGT-GCTTCGATCAGATTCCAAAATTGA-CACATTCCGA-CCTTGAA-----------------TCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTGAGTGAGA----GGTCCACTG---TCCTCGAAACCAGTTGTTG-------CAG---TC-ACAGTGACCACAT-CCGAGCCTTGAACCCTTTCTTAATTCTGATCTCCCACAGTGGCCTGGACAGTTC

Size

Hit Count

Total Norm

scf7180000779409:170927-171055 -

45.88

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCT---CGAAACCAGTTGTGCTTCG---ATCAGATT--CCAAAATTGACACATTCCGACCTTGAATCACC-CACAGC-GGATTGGACAGCTC
ACTCGAATTGGCAGCGGCGATGACAAGAAGGTCCTTTCGGGGGGCGAACGGAAACGATTGGCTTTCGCCGTGGAGCTGCTCAACAATCCCGTGATTCTGTTCTGCGATGAGCCGACAACGGGATTGGAC-----

Size

Hit Count

Total Norm

scf7180000779252:125984-126079 -

37.44

AGACGAGCCCACAACGTGAGTG----AGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTG-----TGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGACGAGCCTACTACGTGAGTACTTGAAAAAAAGTAAAAAAAA-------AAAATAAATTGCTTAATGTCCCATACAAATC------------------------------CAAACAGCGGCCTAGATGATTT

Size

Hit Count

Total Norm

scf7180000779234:252514-252605 +

35.27

AGACGAGCCCACAACGTGAG-----TGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCCACAACGTAAGGCAAATAAGACTATTTACCCATCTAGTCT--GAA-------------------------------TATATATTTTCCCTTT----CATTTCCAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

scf7180000777227:129925-130012 -

31.41

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGACGAACCCACAACGTAGGTTATAGT---TTACCATATTAAACATTCAACTAATTGTGAATTTATTGGTTTTT---------------------------------AGGGGCCTAGATAGTTC

Size

Hit Count

Total Norm

scf7180000768740:1619-1641 +

15.57

Size

Hit Count

Total Norm

None

scf7180000760310:77-99 -

15.57

Size

Hit Count

Total Norm

None

scf7180000779252:132645-132674 -

5.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAACCCACCTC----------------------------------------------------------------------------------------------CGGCCTTGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000778291:10925-10954 -

4.96

Size

Hit Count

Total Norm

None

scf7180000776863:15291-15320 +

4.76

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAACTCTCCTC----------------------------------------------------------------------------------------------CGGCCTTGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000779952:25429-25458 -

4.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCCAC----------------------------------------------------------------------------------------------CAGTGGCCTGGACGAGGT

Size

Hit Count

Total Norm

None

droKik1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302473:48902-49018 -

63.21

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCG-----AAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAAT-------------------CACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTGAGTGAGAG-GTGCCCCA------TCCTCGGTGCAGAACCAGT------------------------TGACAGAACCCGACCTTGAACCTGATCTCTGATCTCCATTCTCCCACAGCGGCCTGGACAGCTC

Size

Hit Count

Total Norm

scf7180000302670:258997-259099 -

40.6

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACC-AGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGGCCACCTCGG------------------CGCTGGATCTCGAGAGCGAGAAGGTGGTGCAGCAGGCCCTGGACGAGGCCCGTTCCGGCCGCACCTGCCTGACC----ATTGCCCATCGC

Size

Hit Count

Total Norm

scf7180000302570:980559-980655 -

35.27

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGATGAACCCACGACGTGAGTGGTTCTC-----CACTATAATAT------CTATATATATATTAACTAAGTTCTCAA-------CACCCTAAT---------CCCTTAGAGGCCTCGATGACCT

Size

Hit Count

Total Norm

scf7180000302677:182617-182704 +

32.58

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTG---------AATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACAACGTAAG----GCTAACATTCTATATGTAC-----------------------------------------CAAACCCACCCTAATTAAATATATTTGCTTACAGAGGCTTGGACAGTAG

Size

Hit Count

Total Norm

scf7180000302679:1551463-1551553 +

32.48

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGG-----TCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAACCAACTACGTGAGTAAGCTAAATAAT-TGAATGGAACAACTCTTGAATTCATTTAATTTTCT-------------------------------------TTCTGTAGAGGCTTGGATAGTTC

Size

Hit Count

Total Norm

scf7180000302382:552878-552954 +

32.37

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTT-GAATCACCCACAGCGGATTGGACAGCTC
AATCATATACTCTACAAG------------------------------------------------TTAAACTTAAAGCTTACAATTTTTTTTTTGAAATTTATTTCCAGGGGTCTCGATAGCTC

Size

Hit Count

Total Norm

scf7180000302382:551888-551913 +

18.03

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACGACGTGAGTGACAG--------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302329:252151-252203 +

12.61

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAACCCACCACCGGTCTGGA----------------------------------------------------------C--------TCCTTCAGTGCCCAGCAGCTGGTG-G----CCA

Size

Hit Count

Total Norm

scf7180000302570:1192702-1192731 +

5.16

Size

Hit Count

Total Norm

None

scf7180000302570:987568-987597 -

4.96

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATGAGCCCACCTC----------------------------------------------------------------------------------------------CGGCTTGGACAGCTC

Size

Hit Count

Total Norm

None

scf7180000302592:2032179-2032208 -

4.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCCACC----------------------------------------------------------------------------------------------TCCGGACTGGATTCCTT

Size

Hit Count

Total Norm

None

scf7180000302391:1204212-1204241 -

3.97

Size

Hit Count

Total Norm

None

droAna3 - 13 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12916:13439490-13439581 +

38.31

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGACGAGCCAACAACGTAAGT--------------------TCTCTGAAACCATT----------CCAATTTTCAAACTTATCAAGTTGT--TAATGTCTTTCACACAGGGGCTTGGATAGTTC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................................................GTCTGTCACGCAGGGGC...........	17	1	1.00	0.00	0.00	1.00	0.00

scaffold_12984:201945-202113 +

36.93

AGACGAGCCCACAACGTGAGTGAGAG---CGAGTTCCAATGTGGTCCTCGA----------------------AACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACA---TTCCGACCTTGAA----------------------------------TCACCCACAGCGGATTGGACAGCTC AGACGAGCCTACAACGTGAGTGAGAGGATCGAG----------ATTCTCGAACCTCGAATTAAAACACTAACAAACCTGTTG-------CTCAGGCTGTTAAAATGACAGTGCTATAAGTCCTTGAACCTCAGTGATATGATCTTCTCGTTTTTTCTCTGATCTCGCACAGTGGCCTGGACAGTTC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............AACGTAAGTTAGAGGATC............................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
............AACGAAAGTGAGAGGATC............................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................................GTGAACCTCAGTGATTTGAT............................................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................GCTATAAGTGGTTGAACCTC.......................................................	20	1	1.00	0.00	0.00	1.00	0.00
............AACGGGAGTGAGAGGTTC............................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.....AGCGAACAACGTGAGTG....................................................................................................................................................................	17	2	0.50	0.00	0.00	0.50	0.00

scaffold_12916:13782076-13782166 -

33.69

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCTACAACGTAAGTGT---------CCTTTC-------TAATACTTGCT-------AGTCTAGTTCTAACTTTATTACTCTTC----------CTTTTTCAGTGGCTTGGACAGCAG

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12916:1990918-1991005 +

31.41

AGACGAGCCCACAACGTGAGTGAG--------------------------------AGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCAC--CCACAGCGGATTGGACAGCTC
AGATGAGCCCACCACGTGAGTAATCCGGATAATAGCCAGCCAAGTGCCAAGTACTAAGTGCC----------------------------------------------------------------------TACTCATGCAGCGGCCTGGACGACTT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12916:13443905-13443953 +

25.41

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC-------------------
CGACGAACCCACAA----------------------------------------------------------------------------------------------GCGGCCTGGACTGCGTGGCCAGTTACCAGGTGATC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_12916:15842326-15842351 -

18.85

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGACGAGCCGACAACGTGAGTGACAG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....AGCGAACAACGTGAGTG......................................................................................................	17	2	0.50	0.00	0.00	0.50	0.00

scaffold_13340:17324951-17324972 +

13.93

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAGCCCACCGTGGGAGTG------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_13337:14074422-14074471 -

10.91

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCGACCACAGG--------------------------------------------------------------------------CCTGGACTCTTTCAGTGCCCAGCAGCTGGTGG

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12916:15841511-15841527 -

10.66

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_13117:3380699-3380712 -

8.2

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGGCGACGA--------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_12916:1984652-1984681 +

5.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCGACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_12916:1533606-1533635 +

5.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCCACCT----------------------------------------------------------------------------------------------CCGGCCTCGACAGCTC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_13337:5904960-5904989 +

4.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCGAC----------------------------------------------------------------------------------------------CAGCGGACTGGACGAGGT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

droBip1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396580:12674-12774 -

41.72

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCAC--------------------CCACAGCGGATTGGACAGCTC
GGATGAACCCACAACGTAAG----------------------------------TTGTCTTTCG-TAAGGTTTCGT---TTG-----TATAATCTTGAATTTATTAAACTGTTGATATCTTTAACGCAGGGGCTTGGACAGTTC

Size

Hit Count

Total Norm

scf7180000396574:340011-340173 +

38.11

AGACGAGCCCACAACGTGAGTGAGAG---CGAGTTCCAATGTG------------------------------------------------------GTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGATGAGCCCACAACGTGAGTGAGAGGATCGGGATTCTTTGGGAGTTAAAACACTAACAAACCTGTTATTGGGGCTGTTAAAGTGACAGTCGTATATGTCCTTGAACC--GCAGTGATCTGATCT----------------TCTTTTTATCTCTGATCTCGCACAGAGGCCTGGACAGCTC

Size

Hit Count

Total Norm

scf7180000396535:746036-746123 -

32.58

AGACGAGCCCACAACGTGAGTGA------GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCTACAACGTAAGTATCCCTACTAATACTTGCTA-----------------AGCTGTTTCTT--------------ATTTAAATATTTCTATTT-----------TAGTGGCTTGGACAGTAG

Size

Hit Count

Total Norm

scf7180000396728:644698-644784 +

30.48

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACCACGTGAG-------------------------------------TACTCCGGATAACCGCCAGTCGAGAATAATACTAACCGCCACCTACCAACAGCGGCCTAGACGACTT

Size

Hit Count

Total Norm

scf7180000396717:79374-79399 -

18.85

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACAACGTGAGTGATAG--------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000396580:6347-6410 -

18.19

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAACCCACAA-----------GCGGCTTGGACTGCGTGGCTAGTTACCAGGTGATCTGCCATCTG-------------------------------------------------CAGCGG

Size

Hit Count

Total Norm

scf7180000396424:828213-828234 +

13.93

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATGAGCCCACAGTGGGAGTG------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000396717:78498-78517 -

12.3

Size

Hit Count

Total Norm

None

scf7180000396728:195285-195314 +

5.16

Size

Hit Count

Total Norm

None

scf7180000396728:638444-638473 +

5.16

Size

Hit Count

Total Norm

None

scf7180000396371:1240845-1240874 +

3.77

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAACCGAC----------------------------------------------------------------------------------------------CAGCGGCCTGGACGAAGT

Size

Hit Count

Total Norm

None

dp4 - 14 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr4_group3:8468658-8468770 +

45.51

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAA-----------------TCACCCACAGCGGATTGGACAGCTC
CGAGTTG-------------------------CGAATTTGCTGCCATAGGTCAGGTGAACACTCATTAAAAGCCG---TTGAGTCATACCATACTTAAAGTGTAATTTGTTTTCTCTCATTTTTAGTGGTCTAGACAGCTC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group4:2073904-2074060 +

41.03

AGACGAGCCCACAACGTGAGTGA-GAGCGAG--------------------------TTCCAATGTGGTCC----------------------TCGAAACCAGTTGT-GCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCA-CCCACAGCGGATTGGACAGCTC AGACGAGCCCACAACGTAAGTATCGAACGAGTGAGAGGACCAGACCAGAGGCAGCATCTGCGATGCGGTCGAAAAGAGAAGAGAAACCAGAGAGCTAAACCAGTTGCTG------------------ACTGACATTCCACAACCTTGAACCATCCCACAGAGGCCTGGATAGTTC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................................................................AAAAAAGxGAAGAGAAACCA......................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................................CACAxACAGGCCTGGATAGTT.	20	1	1.00	0.00	0.00	1.00	0.00

chr4_group3:227131-227222 +

38.01

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACCACGTAGG----ACCCCTTCTCTACGTCA--GTCCAAGCTAGTTGTTCATCCATTTCTCACCCCAT--------------------------TTCAGTGGTTTGGACAGCAG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group4:2704182-2704276 -

37.68

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATT----------------GACACATTCCGACCTTGAA---TCACCCACAGCGGATTGGACAGCTC
AGACGAGCCGACCACGTAAGT-----------------------------------------TGTGCAGACTCCATAGTTCGGTATAGCGGAACGGAACTCA-------CTTGATTTCTCATATTCAGCGGCTTGGACAGCTT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr3:8978106-8978261 +

33.87

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAAT------GTG-------------------------------------------------GTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCA-CCCACAGCGGATTGGACAGCTC CGACGAGCCCACGACAGGCCTGGAC---AGCTTCAGCGCCTACTCGGTGATCAAGACGCTGCGTCATTTGTGCACCCGTCGCCGCATAACCAAGCACTCTCTGAGCCAGGTGTACGGCGAGGACT--C-------------------CTTCGAAACGGCCAGTGGCGAGAGCAGCGGCAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.............................................................................................................................................................GACAGTGGCCAGAGCAGC.....	18	1	1.00	1.00	0.00	0.00	0.00

chr4_group2:140594-140677 -

31.09

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAG-ATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCCACAACGTAAGTGCA--------------------------------------TGATAAGTATTTCCAAATCTGTAAATCCTAAT--TGAA-GGCCAAAAGCGGCCTGGACGATCT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group1:671238-671295 +

26.33

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCCACAGTGGGCTTG-------GATCCCATGTTGCGGGAGAAGTAAGTGGCGCATGGA-----------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group3:8467163-8467204 +

22.95

AGACGAGCCCACAACGTGAGTG--AGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCAACGACGTGAGTATGAATACGAATACAAGTATG------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXR_group8:2198271-2198306 +

15.83

A-----------GACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
ATTCTGTTCTGCGATGAGCCCACCAC----------------------------------------------------------------------------------------------CGGCCTGGAC-----

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chr4_group4:2699104-2699117 -

9.02

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCCACCA--------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chr4_group4:2699088-2699104 -

9.02

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chr4_group2:148111-148140 -

5.16

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chr4_group2:338200-338229 +

4.76

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chrXR_group6:10050361-10050390 -

4.36

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

droPer1 - 14 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_1:9919618-9919741 +

41.87

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAA-----------------TCACCCACAGCGGATTGGACAGCTC TAATGAGTTACCGACTTG--------------CGAATTTGCTGCCATAGGTCAGGTGAACACTCATTAAAAGCCG---TTGAGTCATACCATACTTAAAGTGTAATTTGTTTTCTCTCATTTTTAGTGGTCTAGACAGCTC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................................................ATTTGTTTTCTCTxxTTTTTAGT..............	21	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TTTGATGCCATAGATCAGGT.....................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00

super_10:1078988-1079144 +

41.03

AGACGAGCCCACAACGTGAGTGA-GAGCGAG--------------------------TTCCAATGTGGTCC----------------------TCGAAACCAGTTGT-GCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCA-CCCACAGCGGATTGGACAGCTC AGACGAGCCCACAACGTAAGTATCGAACGAGTGAGAGGACCAGACCAGAGGCAGCATCTGCGATGCGGTCGAAAAGAGAAGAGAAACCAGAGAGCTAAACCAGTTGCTG------------------ACTGACATTCCACAACCTTGAACCATCCCACAGAGGCCTGGATAGTTC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................................................................................................CCACAGAGGCCAGGATAA...	18	1	1.00	0.00	0.00	0.00	1.00	0.00

super_1:1701967-1702058 +

37.7

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACC----CACAGCGGATTGGACAGCTC AGACGAGCCCACCACGTAGG-----ACGCCTTCTC-TACGTCAGTCCAAGCTAGTTGTTCATCCATTT------------------------------CTCACCCCATTACAGTGGTTTGGACAGCAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..............................................................................................................CACTGGTTTGGACAGCAG	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_10:1712523-1712617 -

37.68

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATT----------------GACACATTCCGACCTTGAA---TCACCCACAGCGGATTGGACAGCTC AGACGAGCCGACCACGTAAGT-----------------------------------------TGTGCAGACTCCATAGTTCGGTATAGCGGAACGGAACTCA-------CTTGATTTCTCATATTCAGCGGCTTGGACAGCTT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................................................................CATATTCATCGGCCTGGAC.....	19	2	1.00	0.00	0.00	0.00	0.00	1.00
..........................................................................................GAACGGAACTCA-------CTTGATTTCT........................	22	1	1.00	0.00	0.00	0.00	0.00	1.00

super_4:4299284-4299439 +

32.88

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATG-------------------------------------------------------TGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATC-ACCCACAGCGGATTGGACAGCTC CGACGAGCCCACGACAGGCCTGGAC--A-GCTTCAGCGCCTACTCAGTGATCAAGACGCTGCGTCATCTGTGCACCCGTCGCCGCATAACCAAGCACTCTCTGAGCCAGGTGTACGGCGAGGAC--TC-------------------CTTCGAAACGGCCAGTGGCGAGAGCAGCGGCAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................CTGCGTCGTCTGCGCACC........................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
...............................................................................................................GTGCTGCGAGGAC--TC-------------------CTT..............................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................................................AGTATGGCGAGGAC--TC-------------------CT...............................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................CTCGATGATCAAGACGCT........................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_31:401807-401969 -

32.6

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTC-------CTCGAAACCAGTTGTGCTTCGATCAGAT-------------------------------TCCAAAATTGAC-ACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAAGCCACCTCGGCACTGGACGCCGAGAGTGAAAAGGTTGGTACATCCCTCATTCAGCTGAGCTCTCAACAATCATTATCTTTCGCTTTATTCTTTGGTAGGTTGTCCAAGATGCTCTGGATGCCGCATCCGAGGGTCGCACAACGATCAGCATAGCTC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.........CACCTCGGCACTGGACGCC.......................................................................................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................................AAGATGCTCTGGATGCCGCATCCGAGGGT......................	29	1	2.00	0.00	0.00	0.00	0.00	2.00
............................................................................................................GTCCAAGATGCTCTGGATGCC..................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
........................................................................................GCTTTATTCTTTGGTACT.........................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
..............................................................................................................CCAAGATGCTCTGGATGCC..................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
CGACGAAGCCACCTCGGCACTGGACGCC.......................................................................................................................................	28	1	1.00	0.00	0.00	0.00	0.00	1.00
CGACGAAGCCACCTCGGCACTG.............................................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................GATGCTCTGGATGCCGCATCCGA..........................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................................................................GCTCTGGATGCCGCATCCGAG.........................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GGCACTGGACGCCGAGAGTGAAAA............................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................................................AAGATGCTCTGGATGCCGCATCCGAGGGG......................	29	1	1.00	0.00	0.00	0.00	0.00	1.00

super_8:3753961-3754044 +

31.09

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_1:667553-667604 +

23.84

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGATGAGCCCACAGTGGGCTTG-------GATCCCATGTTGCGTGAGAAGTAAGTGGCG-----------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_1:9918121-9918162 +

22.95

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_24:858649-858684 -

15.83

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

super_8:3741169-3741198 +

5.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC TGACGAACCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....GAACCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	26	2	1.50	0.00	0.00	0.00	0.00	1.50
......AGCCACCTC----------------------------------------------------------------------------------------------CCGCCTGGAC.....	19	1	3.00	0.00	0.00	0.00	0.00	3.00
............CTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	18	2	1.00	0.00	0.00	0.00	0.00	1.00
.....AACCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	25	2	1.00	0.00	0.00	0.00	0.00	1.00
...........CCTC----------------------------------------------------------------------------------------------CGGGCTGGACAGCTC	19	2	0.50	0.00	0.00	0.00	0.50	0.00
...CGAACCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGA......	21	2	0.50	0.00	0.00	0.00	0.00	0.50
...........CCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCT.	18	2	0.50	0.00	0.00	0.00	0.50	0.00

None

super_8:3551438-3551467 -

4.76

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAACCCACCTC----------------------------------------------------------------------------------------------CGGGCTGGACAGCTC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....GAACCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	26	2	1.50	0.00	0.00	0.00	0.00	1.50
............CTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	18	2	1.00	0.00	0.00	0.00	0.00	1.00
.....AACCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	25	2	1.00	0.00	0.00	0.00	0.00	1.00
...........CCTC----------------------------------------------------------------------------------------------CGGGCTGGACAGCTC	19	2	0.50	0.00	0.00	0.00	0.50	0.00
...CGAACCCACCTC----------------------------------------------------------------------------------------------CGGCCTGGA......	21	2	0.50	0.00	0.00	0.00	0.00	0.50
......ACCCTCCGC----------------------------------------------------------------------------------------------CGGGCTGGA......	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...........CCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCT.	18	2	0.50	0.00	0.00	0.00	0.50	0.00

None

super_10:1707456-1707485 -

4.36

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

super_61:330759-330788 -

4.36

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

droWil1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_180772:1508923-1509021 +

43.79

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAAT--------------CACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTAAGTAATAACAAA---------------AAAGACCGGTTATTTC-CTGTT-----------------------AGCCTTGAACTTAACCAACATCTCAACCAACAGAGGCCTGGACAGCTC

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

scaffold_180764:2127346-2127445 -

38.34

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAGCCAACCACGTAAGAGAGAGAGAGAGACAGAGA-----------------AAGCTTAATATGGAATAAATAATTAATAAATTTCCTA-------TTTTTTCAGGGGCCTAGATAGTTC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................ATAGAAAGAGAGAGACAGAGA-----------------....................................................................	21	49	0.08	0.06	0.02	0.00	0.00
..............TGTAAGAGAGAAAGAGAGA...........................................................................................	19	14	0.21	0.21	0.00	0.00	0.00
................TAAGAGAGAGAGAGAGAGAGA.......................................................................................	21	45	0.04	0.04	0.00	0.00	0.00
...............GTAAGAGAGGGAGAGAGAGAGA.......................................................................................	22	31	0.06	0.00	0.00	0.06	0.00
...............GTAACAGAGAGAGAGAGAGAGAGA-----------------....................................................................	24	33	0.06	0.06	0.00	0.00	0.00
...............GTAAGAAAGAGAGAGAGAA..........................................................................................	19	13	0.15	0.15	0.00	0.00	0.00
...............GTAAGAGAGGGAGAGAGAGA.........................................................................................	20	40	0.05	0.00	0.00	0.05	0.00
...................GAGAGAGAAAGAGGCAGAGA-----------------....................................................................	20	31	0.03	0.03	0.00	0.00	0.00
...............GTAACAGAGAGAGAGAGA...........................................................................................	18	78	0.01	0.00	0.01	0.00	0.00
...............GTAAGAGAGAGAGAGAGAGAGAGT-----------------....................................................................	24	25	0.04	0.04	0.00	0.00	0.00
...............GTAAxAGAGAGAGAGAGGCAGA.......................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..............AGTAAGAGAGAGAGAGAG............................................................................................	18	43	0.02	0.02	0.00	0.00	0.00
..................AAAGAGCGAGAGAGACAGAGA-----------------....................................................................	21	38	0.03	0.03	0.00	0.00	0.00
........................AGAGAGCGATAGAGA-----------------AAG.................................................................	18	42	0.02	0.00	0.02	0.00	0.00
........................GTAGAGAGACAGAGA-----------------AAG.................................................................	18	6	0.17	0.00	0.17	0.00	0.00
..................AAAGAGAGAGAGAGACAGAGA-----------------....................................................................	21	33	0.03	0.00	0.03	0.00	0.00
..................AGCGCGAGAGAGAGACAGA.......................................................................................	19	22	0.05	0.05	0.00	0.00	0.00
.............AGCTAAGAGAGAGAGAGAGA...........................................................................................	20	12	0.08	0.08	0.00	0.00	0.00
...........GCACGTAGGAGAGAGAGAGAGA...........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.....................GAAAGAGAGAGACAGAGA-----------------....................................................................	18	36	0.03	0.00	0.03	0.00	0.00
.............ATTTAAGAGAGAGAGAGAGA...........................................................................................	20	11	0.09	0.00	0.09	0.00	0.00
...............GTAAGAGTGAGATAGAGA...........................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
...............GTAAGAAAGAGAGAGAGA...........................................................................................	18	84	0.01	0.01	0.00	0.00	0.00
....................AGAGAGAGAGAAACAGAGG-----------------AA..................................................................	21	3	0.33	0.33	0.00	0.00	0.00
...................GATAGTGAGAGAGACAGAGA-----------------....................................................................	20	29	0.03	0.03	0.00	0.00	0.00
...................GATAGTGAGAGAGACAGAG......................................................................................	19	31	0.03	0.00	0.03	0.00	0.00
...............GTAAGTGGGAGAGAGAGA...........................................................................................	18	11	0.09	0.00	0.09	0.00	0.00
...........GCACGTAGGAGAGAGAGAGAG............................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................TAGAGAGAGAGAGACAGA.......................................................................................	18	34	0.03	0.00	0.03	0.00	0.00
.................AAGAGAGTGAAAGAGACAGA.......................................................................................	20	6	0.17	0.00	0.17	0.00	0.00
......................AGAGAGACAGACAGAGA-----------------AAGA................................................................	21	39	0.03	0.03	0.00	0.00	0.00
....................ATAGTGAGAGAGACAGAGA-----------------....................................................................	19	41	0.02	0.02	0.00	0.00	0.00
....................AGCGATAGAGAGACAGAGA-----------------....................................................................	19	24	0.04	0.00	0.04	0.00	0.00
..................AGAGACAGACAGAGACAGA.......................................................................................	19	45	0.02	0.02	0.00	0.00	0.00
...............GAAAGAGAGAGAGAGAAACAGA.......................................................................................	22	43	0.02	0.02	0.00	0.00	0.00
...................GACAGAGAGAGACACAGAGA-----------------....................................................................	20	35	0.03	0.03	0.00	0.00	0.00
...............GTAAGGGAGAGAGAGAGAGAGA.......................................................................................	22	34	0.03	0.00	0.03	0.00	0.00
...............GTAACAGAGAGAGAGAGAGAGA.......................................................................................	22	51	0.02	0.02	0.00	0.00	0.00
...............GTAAGAGAGAGAGAGAGATGG........................................................................................	21	11	0.09	0.09	0.00	0.00	0.00
.........................GAGAGACACCGAGA-----------------AAGC................................................................	18	2	0.50	0.00	0.00	0.50	0.00
....................AGAGAGAGAGTCACAGAGA-----------------....................................................................	19	17	0.06	0.00	0.06	0.00	0.00
........................ACAGACAGACAGAGA-----------------AAG.................................................................	18	12	0.08	0.00	0.08	0.00	0.00
...............GAAAGAGAGAGAGAGAAACAGAGA-----------------....................................................................	24	20	0.05	0.05	0.00	0.00	0.00
...............CTACGAGAGAGAGAGAGA...........................................................................................	18	20	0.05	0.00	0.05	0.00	0.00
...............CTAAGAGAAAGAGAGAGA...........................................................................................	18	33	0.03	0.00	0.00	0.03	0.00
.........................GAGAGAGACAGAGA-----------------AAGA................................................................	18	63	0.02	0.02	0.00	0.00	0.00
...................GAGAGAGAGAGAGACAGA.......................................................................................	18	373	0.00	0.00	0.00	0.00	0.00
....GAGCCAACCACGTAAGAGAGAGA.................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.................................CAGAGA-----------------AAGCxTAATATGT.......................................................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180772:1831735-1831837 -

36.09

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACAC-----------------------ATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAACCTACAACGTAAG---------------------------------------CTT---CTAGTTTGTAGAATTAATATTGAAGGGTATAAATTGATAGCAAGTTTTCTCCTTTAGTGGCCTAGAT--GATCAATCGAGTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................................................................GGGTxTACATTGATAGCAA.......................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................ATATTGAATGGTACAAATT...............................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_180708:12240191-12240284 -

36.04

AGACGAGCCCACAACGTGAGTG--------------------AGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGACGAGCCCACAACGTAAGTTTTACAAAGATTTTCCCTTTTATCGGGAATACTAACGAA---------ATTTCTTGT--------CA---------------------------------AATTACAGCGGCTTGGATAGTAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................TAGCGAA---------ATTCCTTGT--------CA---------------------------------.......................	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_181132:846275-846295 -

14.75

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCAACAACGTGAGT-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

scaffold_181061:360-380 -

14.75

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

scaffold_176328:157-177 +

14.75

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

scaffold_181132:844953-844970 -

11.48

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

scaffold_176328:1486-1503 +

11.48

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

scaffold_180916:2504418-2504455 +

6.78

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGATGAACCGACCAG---------------------------------------T--GGCTTGGATGAGGT---------------------------------------------AACGGCTG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........................................................GTTGGxTGAGGT---------------------------------------------AACGGCT.	18	1	8.00	6.00	0.00	2.00	0.00
.GATGAACCGGCAAG---------------------------------------T--GGCT...............................................................	19	1	2.00	2.00	0.00	0.00	0.00
............................................................TTGGATGAGGT---------------------------------------------AACGGCTG	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_180772:2075030-2075059 +

5.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGACGAGCCGACCTCG----------------------------------------------------------------------------------------------GGTTTGGACAGTTC

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

scaffold_180772:1845867-1845896 -

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGATGAGCCCACCTC----------------------------------------------------------------------------------------------TGGTCTTGATAGCTC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........CCTC----------------------------------------------------------------------------------------------TGGTCTTGATAGCTC	19	1	3.00	0.00	2.00	1.00	0.00
.........CACCTC----------------------------------------------------------------------------------------------TGGTCTTGATAGCT.	20	1	2.00	0.00	2.00	0.00	0.00
.GATGAACACACCTC----------------------------------------------------------------------------------------------TGGT...........	18	1	2.00	0.00	0.00	0.00	2.00
.........CACCTC----------------------------------------------------------------------------------------------TGGTCTTGATAGC..	19	1	1.00	0.00	1.00	0.00	0.00
.GATGAGCCCACCTC----------------------------------------------------------------------------------------------AGGT...........	18	1	1.00	0.00	1.00	0.00	0.00
.GATGAGCCCACCTC----------------------------------------------------------------------------------------------CGGACT.........	20	1	1.00	0.00	0.00	0.00	1.00
........CCACCTC----------------------------------------------------------------------------------------------TGGTCTTGATAGCT.	21	1	1.00	1.00	0.00	0.00	0.00
.........CACCTC----------------------------------------------------------------------------------------------TGGTCTTGATAGAT.	20	1	1.00	0.00	1.00	0.00	0.00
......GCCCACCTC----------------------------------------------------------------------------------------------TGGTCTTGATAGCT.	23	1	1.00	1.00	0.00	0.00	0.00

None

droVir3 - 15 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12963:11356884-11356997 +

51.15

AGACGAGCCCACAACGTGAGTGAGAGC---GAGTT---CCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGA-------ATCACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTAAGCAAGAATAGAGAATGCAATCAATGCG------GAAACCAGTTGC----TG-------------ACTAACATGTGCTTACCTTGAAATTGTAACCATTCGCAGGGGCCTGGATAGTTC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12963:17577314-17577403 +

37.18

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGG-TCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAACCCACGTCGTATGC---AGCCATTTGCAGTGAATCACCTTGAACTCAA-------------------CTAAAGTGTCACTTT-------------TCTTACAGCGGATTGGACAGCTC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12963:8130997-8131079 -

36.75

AGACGAGCCCACAACGTGAG-------TGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC TGATGTGAGTACATAGAAAATAGGCAGAGAGAGAAAGATA--------TATTTTAATAAAGCTGAGCTTAGACTAGATCC--------------TCCGAATTTGA--------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.........................AGAGAGAGAAAGAAA--------GATT...............................................................................	19	9	0.11	0.00	0.11	0.00	0.00	0.00
.....................AGTCAGTGAGAGAAAGAT............................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_12723:4007036-4007122 +

35.37

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTT------GTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACGACGTAAGTG----------------------TCTAAGCCACTTGGAGTTGTGG--------------------AGCCCATTTTAATCTTGTCTC-CTTACAGCGGCTTGGACAGCAG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12875:18733996-18734157 -

33.94

AGACGAGCCCACAACGTGAGTGAGA---GCGAGTTCCAATGTGGTCCTCGAAAC-------CAGTTGTGCTTCGA----------------------------TCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAACCAACCACCGGCCTGGATAGCTTCAGTGCGTACACGGTCATCAAGACGCTGCGACATCTGTGCACCAGGCGGCGCATAGCCAAGCACTCGCTGACCCAGGTTTACGGCGAGGACTCGTTCGCGACGCCCAGTGACAACGGCAGCTCGGGCAGCAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................................ATCAAGGCGCTGxGACATC.................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................AGCTTCAGCGCGTGCACG.......................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
............................................................................CGGCACGTAGCCAAGC......................................................................	16	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_12875:566459-566535 -

31.56

AGACGAGCCCACAA-------------CGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGACGAGGCGACGTCCGCCCTGGATCTGGAGAGCGAAAAGGTGGTGCAACA-GGCCCTCGA--CGAGGCACGCGCCGGTC---------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................ATCTGGAGAGCGAAAAGGTGGT............................................................................................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
................GCTGTGGATCTGGAGAGC.......................................................................................................	18	1	2.00	1.00	0.00	0.00	1.00	0.00
..............CCGCCCTGGATCTGGAGAGC.......................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................GGCCCTCGA--CGAGGCACGCGCC.............................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
............GTCCGCCCTGGATCTGGAGAGC.......................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........CGACGTCCGCCCTGGATCTGGAGAGC.......................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
.........GACGTCCGCCCTGGATCTGGAGAGC.......................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
...........CGTCCGCCCTGGATCTGGAGAGC.......................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................AACA-GGCCCTCGA--CGAGGCACGCGCCGGT..........................................................	29	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................ATCTGGAGAGCGAAAAGGT...............................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_13246:244147-244235 -

31.18

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC AGATGAGCCAACAACGTATG-----------------------TTTGATGTTATGTGTGCATTGATTCGCTTT----ACTAGTCTATTCTGTT--------TCTTGCAGGGGACTGGACGATCT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............GTATG-----------------------CTAGATGTTATGT....................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_13049:1491332-1491412 +

24.63

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGAT--------------------------TGGACAGCTC TGACGAGCCCACAACCGGGCTG---------------------------------------------------------------------GACTCGTACAGCGCACAGCAGCTGGTGGCCACGCTGCACGAGCTGGCCCAGAAGGGCAC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................................................CTGCTCGAACTGGCCCAG........	18	1	2.00	0.00	0.00	0.00	0.00	2.00
....................................................................................................................................GCTGGTTCAGAAGGGCA.	17	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................................................................................................................TCTGGCGCAGAAGGGCAC	18	1	1.00	0.00	0.00	0.00	0.00	1.00

scaffold_12963:12839162-12839184 -

15.57

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCAACGACGTGAGTAA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

scaffold_12963:8130439-8130462 -

13.93

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCG-GATTGGACAGCTC A-----------------------------------------------------------------------------------------------------CCCACCTCGGGGCTGGACAGCCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................................CCACCTCGGGGCTGGACAGCC.	21	1	1.00	0.00	0.00	0.00	1.00	0.00

None

scaffold_12963:12838011-12838029 -

13.11

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

scaffold_12875:569033-569048 -

10.66

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
AGACGAGGCAACATCG------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

scaffold_12472:35056-35070 +

8.2

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

scaffold_13246:411910-411939 +

5.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAGCCAACCTC----------------------------------------------------------------------------------------------CGGCCTGGACAGCTC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........ACCTC----------------------------------------------------------------------------------------------TGGACTGGACAGCT.	19	1	2.00	0.00	0.00	0.00	0.00	2.00
...........CCTC----------------------------------------------------------------------------------------------TGGACTGGACAGCT.	18	1	1.00	0.00	0.00	0.00	0.00	1.00

None

scaffold_13049:23845042-23845071 +

4.36

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAGCCCAC----------------------------------------------------------------------------------------------CAGCGGCCTGGACGAGGT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......CACxC----------------------------------------------------------------------------------------------CAGCGGCCTGGAGG....	18	1	1.00	0.00	0.00	1.00	0.00	0.00

None

droMoj3 - 14 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6308:1548466-1548588 -

47.3

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGAC--------------------ACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCCACGTCGGGCCTGG------ACTCCTTTACCGCCCAC-----------AGCGTCGTCCAGGTGCTGAAGAAGCTATCGCAAAAGGGCAAGACCGTCATACTGACCATACATCAGCCATCG----TCGGAGCTCTT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:20105720-20105814 +

42.36

AGACGAGCCCACAACGTGAGTGA---------GAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGA------AT-CACCCACAGCGGATTGGACAGCTC
AGACGAGCCCACAACGTAAGCAACATCTACAACAGCACGATCAGATGTAGCAT---------------------------------------------TAACCTTGAGACTGTATCCCTTCACAGTGGCCTGGACAGCTC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:22618723-22618821 +

41.88

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGATGAGCCCACCTCGTATGTAGA----CAATCCCATATGGAAAAATAAACAAATTGAAATTCATTTA------------------TTCTTATCT---GTAACTCTTAGGGGTCTAGACAGCTC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................................................................................................AGCCAGCTT	19	4	0.25	0.25	0.00	0.00	0.00

scaffold_6500:14717984-14718077 -

37.9

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCCACAACGTAGGTG----CACATTTTCGTCTAGTCAACGT---CAATTC----------------TCAA-------TCTCTCGCTTTACTCTGTCCAATAGTGGCTTGGACAGCAG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:238620-238704 -

28.98

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC GGATGAGCCAACAACGTAGGT---------TTCAGAAAAGATTTTTGGAGATATT----------------------ATTATTATATTCTCGTT--------CTTACAGTGGCCTGGACGACCT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................AAAAAGATGTTTGGAGAT........................................................................	18	1	1.00	1.00	0.00	0.00	0.00
....................................AAAGATGTTTGGACATAT......................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_6496:12390088-12390276 -

24.59

AGACGAGCCCACAACGTGAGTGAGA-G--CGAGTTCCAATGTGGTCCTCG------------------------------------------------------------------------------------------------AAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC CGACGAGCCAACCACCGGCCTGGACAGCTTCAGTGCCTACTCAGTGATCAAGACGCTGCGCCATCTGTGCACCAGGCGGCGCATAGCGAAGCACTCGCTCACCCAGGTCTACGGCGAGGACTCGTTCTCCACGCCCAGCGAGGAGAGCACCAGCAGCAACTCGATCGAAATGGAAAT-C---------------------------------GTGGACAAGTC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................................................................................................................................AGCCCCAGCAGCCACTCGAT..........................................................	20	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................................CAGCTGGGAGAGCACCAGC.....................................................................	19	2	0.50	0.50	0.00	0.00	0.00
.......................................................................................................................................CAGCTAGGAGAGCACCTGC.....................................................................	19	2	0.50	0.00	0.00	0.50	0.00
.......................................................................................................................................CAGCGxGGAGAGCACCTGC.....................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................................CAGCGGGGAGAGCACCTGC.....................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_6500:7224728-7224748 +

15.57

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACAACGTGAGT-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

scaffold_6500:7225929-7225945 +

12.3

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

scaffold_6654:2332039-2332085 -

10.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGATGAGCCCACCACGGGAC----------------------------------------------TCGATTCCTACAGTGC-----------------------TCAGCAGCTGG--------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6496:3570396-3570410 -

9.02

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAGGCGACATC-------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

scaffold_6328:2038652-2038665 -

7.38

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGACGAAGCGACGA--------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

scaffold_6500:22624763-22624792 +

4.76

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATGAGCCCAC----------------------------------------------------------------------------------------------CAGCGGACTGGATAGCGT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

scaffold_6500:245437-245466 -

4.76

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC TGATGAGCCCACTTCG----------------------------------------------------------------------------------------------GGACTGGATAGCTC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.GATGAGCCCACTTCG----------------------------------------------------------------------------------------------GGACTGGATAGCT.	28	1	1.00	1.00	0.00	0.00	0.00

None

scaffold_6680:18468834-18468863 +

4.16

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
CGACGAGCCGAC----------------------------------------------------------------------------------------------CAGCGGGCTGGACGAGGT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

droGri2 - 9 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15252:5474360-5474483 +

53.53

AGACGAGCCCACAACGTGAGTGAGA--GCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATC--------ACC--CACAGCGGATTGGACAGCTC
GGACGAGCCCACAACGTAAGTGAAACACCGAAACACCACACAATC--GAGAACCAGTTAC----TGACTAA------GCATTATTATTTTTTAACCTTGAAATTGCATCGCATCCATACAGGGGCCTGGACAGTTC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15252:3652930-3653030 -

41.07

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGT-GGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATC----ACCCACAGCGGATTGGACAGCTC
GGACGAGCCGACGACGTAAGTGCTT------------GAAGACTTTGGAAACTATTAAAGCAATGCCTAATCTCT----------------GATTTTTACTCGCATTTTTACAGCGGCTTGGACAGCAG

Size

Hit Count

Total Norm

V109
Male body

scaffold_15252:15001696-15001792 +

38.47

AGACGAGCCCACAACGTGAGTGAG-AGCGAGTTCCAA-TGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGAC--ACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCCACATCGTAGGTCCAAAATCCGTTTCAACTCTT-----------------------G--------TCCAGCTTAACTAATGTTTCCCTCTTTATGCTCCATTAGCGGCCTGGATAGCTC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15252:17045886-17045988 +

33.64

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGA---------AACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCGACAACGTAAGTTTAAACCATTGTGTGTGTCTACCGTAAAGAGGAGATAACCAATTATTGTTTCATCTGATGC------------------------------TTTCAGTGGCCTCGACGATCT

Size

Hit Count

Total Norm

V109
Male body

scaffold_14978:850305-850325 +

13.93

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
GGATGAGCCAACAACGTAAGT-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

None

scaffold_14978:851398-851415 +

13.11

Size

Hit Count

Total Norm

V109
Male body

None

scaffold_15110:13819003-13819047 -

9.52

AGACGAGCCCACAACGTGA----GTGAG-----AGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC---- CGACGAACCCACAAGCGGTCTGGATGAGGTGACG--------------------------------------------------------------------------------------------GCAGCCCAGTG	Size	Hit Count	Total Norm	V109 Male body
.............AGCGGTCTGGATGAGGTGACG--------------------------------------------------------------------------------------------GCAGC......	26	1	1.00	1.00
.............AGCGGTCTGGATGAGGTGACG--------------------------------------------------------------------------------------------GCAGCCC....	28	1	1.00	1.00

scaffold_15252:16828881-16828910 -

4.56

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATGAGCCCACCTCG----------------------------------------------------------------------------------------------GGCTTGGATAGTTC

Size

Hit Count

Total Norm

V109
Male body

None

scaffold_15252:17036699-17036728 +

4.36

AGACGAGCCCACAACGTGAGTGAGAGCGAGTTCCAATGTGGTCCTCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATTCCGACCTTGAATCACCCACAGCGGATTGGACAGCTC
TGATGAGCCCACTTCG----------------------------------------------------------------------------------------------GGGCTGGATAGTTC

Size

Hit Count

Total Norm

V109
Male body

None

Generated: 04/20/2012 at 05:34:06 EDT