dme-mir-34- Best orthologs

dme-mir-34	chr3R:5926658-5926756 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 5926674-5926694
   star strand at position 5926725-5926747
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:5926643-5926771 +		1	C--AAACAA-GTATTCT------TAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TA--A-------------
droSim1	chr3R:15449371-15449500 -	LASTZ	1	C--AATCAAAGTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TG--G-------------
droSec1	super_0:15986833-15986962 -	LASTZ	1	C--AATCAAAGTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TA--G-------------
droYak2	chr3R:9974454-9974582 +	LASTZ	1	C--AATCAA-GTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTA-----------CT--C-------------
droEre2	scaffold_4770:15673299-15673427 -	LASTZ	1	C--AATCAA-GTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TC--ATTGC-TTGTGACA----AC-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTA-----------CT--C-------------
droEug1	scf7180000409470:260340-260477 +	LASTZ	4	A--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT---TTGC-CGTTGAAA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATAATGA----TA----G---TTTA-----T
droBia1	scf7180000302402:3423413-3423540 +	LASTZ	4	C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAGGCTAATGCAACGATA--------------A-------------
droTak1	scf7180000415245:179377-179514 -	LASTZ	4	CACAATCAA-GAAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAATGCAACGATAATGG----TATT--G-------------
droEle1	scf7180000490967:803608-803743 -	LASTZ	4	C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATAATGC----TATA--T-------------
droRho1	scf7180000779228:26249-26377 +	LASTZ	4	C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATA-----------A--T-------------
droFic1	scf7180000454104:900926-901074 -	LASTZ	4	C--AATCAA-GTTAACT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGACAA-TA--CTTGC-CACTGAAA----GT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTATAATGC----TAAT--CAGGGTAATAACAA
droKik1	scf7180000302706:2181098-2181227 +	LASTZ	4	A--ATCCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGCAGTCA----ATCCCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTT-----------TA--A-------------
droAna3	scaffold_13340:6489967-6490093 +	LASTZ	1	T--AATTCA-GTTACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCGTTGGCAATTAAT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAACTTA-----------------------------
droBip1	scf7180000396708:2359308-2359432 -	LASTZ	4	C--AAT------AACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCTTTGGCAATTAAT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAACTTA-----------TT--C-------------
dp4	chr2:5019555-5019683 -	LASTZ	1	A--AATCCA-GAAAATT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACC----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATA--------------A-------------
droPer1	super_19:724982-725124 -	LASTZ	1	A--AATCCA-GAAAATT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACC----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATAA-GCAACATATAATC------------G
droWil1	scaffold_181089:11166523-11166648 -	LASTZ	1	T--AAC------A--TT------CTATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TTAAATTGC-CAA-AACA-ATAAA-CCACAGCCACTATCTTCACTGCCGCCGCGACAGGCCATGACAACAAT-----------CG--G-------------
droVir3	scaffold_12855:2682541-2682664 -	LASTZ	1	A--AAAAAA-ATTACCTTAAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-T------------TGACA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACAGCAAA---------------A-------------
droMoj3	scaffold_6540:11883356-11883481 -	LASTZ	1	C--GAAAAA-ATACCCTTTAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAC-T------------TGAAA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCGAG-----------AG--A-------------
droGri2	scaffold_14624:2267430-2267555 +	LASTZ	1	A--AACCAA-ATTCCATT-----GAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-C------------TGACA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCAATAAA------TATA--A-------------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	C--AAACAA-GTATTCT------TAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TA--A-------------
droSim1	C--AATCAAAGTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TG--G-------------
droSec1	C--AATCAAAGTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TA--G-------------
droYak2	C--AATCAA-GTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTA-----------CT--C-------------
droEre2	C--AATCAA-GTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TC--ATTGC-TTGTGACA----AC-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTA-----------CT--C-------------
droEug1	A--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT---TTGC-CGTTGAAA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATAATGA----TA----G---TTTA-----T
droBia1	C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAGGCTAATGCAACGATA--------------A-------------
droTak1	CACAATCAA-GAAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAATGCAACGATAATGG----TATT--G-------------
droEle1	C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATAATGC----TATA--T-------------
droRho1	C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATA-----------A--T-------------
droFic1	C--AATCAA-GTTAACT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGACAA-TA--CTTGC-CACTGAAA----GT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTATAATGC----TAAT--CAGGGTAATAACAA
droKik1	A--ATCCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGCAGTCA----ATCCCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTT-----------TA--A-------------
droAna3	T--AATTCA-GTTACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCGTTGGCAATTAAT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAACTTA-----------------------------
droBip1	C--AAT------AACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCTTTGGCAATTAAT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAACTTA-----------TT--C-------------
dp4	A--AATCCA-GAAAATT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACC----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATA--------------A-------------
droPer1	A--AATCCA-GAAAATT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACC----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATAA-GCAACATATAATC------------G
droWil1	T--AAC------A--TT------CTATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TTAAATTGC-CAA-AACA-ATAAA-CCACAGCCACTATCTTCACTGCCGCCGCGACAGGCCATGACAACAAT-----------CG--G-------------
droVir3	A--AAAAAA-ATTACCTTAAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-T------------TGACA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACAGCAAA---------------A-------------
droMoj3	C--GAAAAA-ATACCCTTTAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAC-T------------TGAAA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCGAG-----------AG--A-------------
droGri2	A--AACCAA-ATTCCATT-----GAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-C------------TGACA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCAATAAA------TATA--A-------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

C--AATCAAAGTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TG--G-------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	88577.00	0.00	54372.00	34067.00	138.00
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	23135.00	64.00	14475.00	8561.00	35.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	14031.00	112.00	11743.00	2048.00	128.00
................................................................TAGCCAA-TT--ATTGC-CGTTGAC....................................................................................	21	1	11690.00	0.00	9782.00	1871.00	37.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	8840.00	261.00	5210.00	3342.00	27.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-TC..........................................................................	26	1	6542.00	0.00	5489.00	1034.00	19.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-............................................................................	24	1	4338.00	0.00	3499.00	828.00	11.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----...............................................................................	22	1	3415.00	0.00	2712.00	695.00	8.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-T...........................................................................	25	1	2993.00	1.00	2419.00	566.00	7.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	2563.00	12.00	1667.00	879.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	2061.00	936.00	696.00	424.00	5.00
........................................TGGCAGTGTGGTTAGCTGTA.................................................................................................................	20	1	2005.00	0.00	1118.00	884.00	3.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	1386.00	3.00	823.00	558.00	2.00
....................................................................................................CAGCCACTATCTTCACTG.......................................................	18	1	1370.00	0.00	1117.00	241.00	12.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	1332.00	1.00	978.00	350.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	1327.00	53.00	738.00	534.00	2.00
....................................................................................................CAGCCACTATCTTCACTGCCGC...................................................	22	1	1245.00	7.00	1087.00	141.00	10.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	984.00	0.00	639.00	343.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	935.00	14.00	670.00	247.00	4.00
........................................TGGCAGTGTGGTTAGCGG...................................................................................................................	18	1	922.00	0.00	480.00	440.00	2.00
........................................TTGCAGTGTGGTTAGCTG...................................................................................................................	18	1	806.00	0.00	572.00	232.00	2.00
....................................................................................................CAGCCACTATCTTCACTGC......................................................	19	1	756.00	0.00	594.00	144.00	18.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	635.00	0.00	418.00	216.00	1.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	539.00	0.00	231.00	307.00	1.00
....................................................................................................CAGCCACTATCTTCACTGCCGAC..................................................	23	1	473.00	0.00	429.00	39.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	388.00	0.00	191.00	196.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTGG...............................................................................................................	22	1	386.00	0.00	199.00	184.00	3.00
........................................TTGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	343.00	0.00	257.00	86.00	0.00
........................................TGGCAGTGTGGTTAGCTGGG.................................................................................................................	20	1	337.00	0.00	189.00	148.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACT----...............................................................................	22	1	319.00	0.00	256.00	58.00	5.00
....................................................................................................CAGCCACTATCTTCACTGCCGCCA.................................................	24	1	315.00	0.00	103.00	212.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----A..............................................................................	23	1	292.00	0.00	236.00	55.00	1.00
........................................TGTCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	260.00	0.00	222.00	38.00	0.00
........................................TCGCAGTGTGGTTAGCTG...................................................................................................................	18	1	259.00	0.00	189.00	68.00	2.00
........................................TGGCAGTGTTGTTAGCTG...................................................................................................................	18	1	254.00	0.00	181.00	72.00	1.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	245.00	0.00	118.00	127.00	0.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	233.00	0.00	168.00	65.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	211.00	1.00	121.00	88.00	1.00
........................................TGGCAGTGTGTTTAGCTG...................................................................................................................	18	1	185.00	0.00	133.00	50.00	2.00
.........................................TGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	180.00	0.00	136.00	44.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGG..............................................................................................................	23	1	170.00	0.00	70.00	100.00	0.00
........................................TGGCAGTTTGGTTAGCTG...................................................................................................................	18	1	165.00	0.00	122.00	43.00	0.00
........................................TGGCAGTGTGGTTAGCTGGAT................................................................................................................	21	1	163.00	0.00	71.00	92.00	0.00
........................................TGGCAGTGTGGTTAGCTGC..................................................................................................................	19	1	145.00	0.00	111.00	34.00	0.00
........................................TGGCATTGTGGTTAGCTGGTTG...............................................................................................................	22	1	140.00	0.00	119.00	21.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	139.00	0.00	87.00	52.00	0.00
........................................TCGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	125.00	0.00	101.00	24.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTG................................................................................................................	21	1	117.00	0.00	64.00	53.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCG....................................................	21	1	115.00	0.00	75.00	39.00	1.00
........................................TGGCAGCGTGGTTAGCTG...................................................................................................................	18	1	112.00	0.00	68.00	43.00	1.00
....................................................................................................CAGCCACTATCTTCACTGCC.....................................................	20	1	111.00	0.00	82.00	26.00	3.00
........................................TGGCAGTGGGGTTAGCTG...................................................................................................................	18	1	109.00	0.00	45.00	64.00	0.00
........................................TGGCAGTGTTGTTAGCTGGTT................................................................................................................	21	1	104.00	0.00	77.00	27.00	0.00
........................................TGGCAGTGTGGTTAGCTT...................................................................................................................	18	1	101.00	0.00	59.00	42.00	0.00
........................................TGCCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	95.00	0.00	71.00	24.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACG----...............................................................................	22	1	94.00	0.00	72.00	22.00	0.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	93.00	0.00	65.00	28.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	92.00	0.00	61.00	31.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	92.00	0.00	28.00	64.00	0.00
........................................TGGCAGTGTCGTTAGCTG...................................................................................................................	18	1	90.00	0.00	62.00	28.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGAT...........................................................................................................	26	1	89.00	0.00	13.00	76.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AC-............................................................................	24	1	87.00	0.00	74.00	13.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	81.00	41.00	26.00	14.00	0.00
........................................TGGCAGTGTGGTTAGCCG...................................................................................................................	18	1	80.00	0.00	49.00	30.00	1.00
........................................TGGCAGGGTGGTTAGCTG...................................................................................................................	18	1	78.00	0.00	47.00	31.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	75.00	3.00	26.00	46.00	0.00
........................................TGGCAGTGCGGTTAGCTG...................................................................................................................	18	1	75.00	0.00	39.00	36.00	0.00
........................................TGGCATTGTGGTTAGCTGGTT................................................................................................................	21	1	74.00	0.00	61.00	13.00	0.00
..........................................GCAGTGTGGTTAGCTGGTT................................................................................................................	19	1	71.00	0.00	54.00	17.00	0.00
........................................TTGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	69.00	0.00	50.00	19.00	0.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	69.00	0.00	44.00	25.00	0.00
........................................TGGCAGTGTGGTTAGCTGGAC................................................................................................................	21	1	65.00	0.00	37.00	28.00	0.00
....................................................................................................CATCCACTATCTTCACTGCCGCC..................................................	23	1	65.00	0.00	57.00	7.00	1.00
........................................TGGCAGTTTGGTTAGCTGGTT................................................................................................................	21	1	64.00	0.00	50.00	14.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	58.00	2.00	38.00	18.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	57.00	56.00	0.00	1.00	0.00
.......................................................................................................CCACTATCTTCACTGCCGCC..................................................	20	1	56.00	0.00	53.00	3.00	0.00
........................................TGGCAGTGTGCTTAGCTG...................................................................................................................	18	1	56.00	0.00	42.00	14.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGTG...............................................................................................................	22	1	55.00	2.00	27.00	26.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----CT-TC..........................................................................	26	1	53.00	0.00	48.00	5.00	0.00
........................................TGGCACTGTGGTTAGCTGGTTG...............................................................................................................	22	1	52.00	0.00	45.00	6.00	1.00
........................................TGGCAGTGTxGTTAGCTGGTT................................................................................................................	20	1	52.00	0.00	37.00	15.00	0.00
........................................TAGCAGTGTGGTTAGCTG...................................................................................................................	18	1	49.00	0.00	29.00	20.00	0.00
........................................TGGCAGTGTGGTTAGCTGAA.................................................................................................................	20	1	48.00	0.00	22.00	26.00	0.00
...........................................CAGTGTGGTTAGCTGGTT................................................................................................................	18	1	48.00	0.00	40.00	8.00	0.00
........................................TGGCAGTGTGGGTAGCTG...................................................................................................................	18	1	48.00	0.00	24.00	24.00	0.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	47.00	0.00	32.00	15.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-TCA.........................................................................	27	1	47.00	2.00	36.00	8.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGG............................................................................................................	25	1	46.00	1.00	18.00	26.00	1.00
....................................................................................................CAGCCACTATCTTCACTTCCGCC..................................................	23	1	46.00	0.00	40.00	5.00	1.00
.....................................................................................................AGCCACTATCTTCACTGCCGCC..................................................	22	1	46.00	0.00	37.00	9.00	0.00
.........................................TGCAGTGTGGTTAGCTGGTTG...............................................................................................................	21	1	45.00	0.00	36.00	9.00	0.00
........................................TGGCAGTGTGGTTATCTG...................................................................................................................	18	1	44.00	0.00	34.00	10.00	0.00
........................................TGGCAGTGTGGCTAGCTG...................................................................................................................	18	1	44.00	0.00	29.00	15.00	0.00
........................................TGGCAGTGTAGTTAGCTG...................................................................................................................	18	1	43.00	0.00	32.00	11.00	0.00
........................................TGGCGGTGTGGTTAGCTG...................................................................................................................	18	1	43.00	0.00	24.00	18.00	1.00
........................................CGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	43.00	0.00	21.00	19.00	3.00
........................................TGTCAGTGTGGTTAGCTG...................................................................................................................	18	1	41.00	0.00	31.00	10.00	0.00
........................................TGGCAGTGTGGTTAACTG...................................................................................................................	18	1	38.00	0.00	20.00	18.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	38.00	0.00	27.00	11.00	0.00
........................................TGTCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	37.00	0.00	27.00	10.00	0.00

droSec1

C--AATCAAAGTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTA-----------TA--G-------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	929829.00	336933.00	1067.00	591829.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	559788.00	165438.00	5809.00	388541.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	471772.00	135690.00	2168.00	333914.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	334260.00	120840.00	286.00	213134.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	110341.00	37138.00	98.00	73105.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	102056.00	70602.00	81.00	31373.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	82670.00	31089.00	721.00	50860.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	50582.00	19054.00	34.00	31494.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	31215.00	15219.00	153.00	15843.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	25314.00	16614.00	8.00	8692.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	21997.00	11805.00	15.00	10177.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	15593.00	8838.00	7.00	6748.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	13569.00	6757.00	10.00	6802.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	12558.00	207.00	24.00	12327.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	11051.00	3820.00	11.00	7220.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	7374.00	5560.00	2.00	1812.00
........................................TGGCAGTGTGGTTAGCTGATT................................................................................................................	21	1	3654.00	2908.00	4.00	742.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGC............................................................................................................	25	1	3314.00	1191.00	15.00	2108.00
........................................TGGCAGTGTGGTTAGCTGCTT................................................................................................................	21	1	3283.00	2916.00	0.00	367.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	3244.00	1457.00	0.00	1787.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	2909.00	2115.00	1.00	793.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGAA...........................................................................................................	26	1	2632.00	2030.00	1.00	601.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-............................................................................	24	1	2379.00	418.00	3.00	1958.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	2355.00	534.00	446.00	1375.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-T...........................................................................	25	1	1991.00	249.00	10.00	1732.00
........................................TGGCAGTGTGGTTAGCTGGAT................................................................................................................	21	1	1862.00	778.00	0.00	1084.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	1831.00	704.00	1.00	1126.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	1767.00	419.00	3.00	1345.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	1739.00	559.00	0.00	1180.00
........................................TGGCAGTGTGGTTAGCTGCTTGTG.............................................................................................................	24	1	1702.00	1412.00	1.00	289.00
........................................TGGCAGTGTGGTTAGCTGATTGTG.............................................................................................................	24	1	1675.00	1250.00	1.00	424.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----...............................................................................	22	1	1653.00	570.00	2.00	1081.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	1633.00	1009.00	9.00	615.00
........................................TGGCAGTGTGGTTAGCTGGTTAA..............................................................................................................	23	1	1609.00	1109.00	0.00	500.00
........................................TGGCAGTGTGGTTAGCTGAT.................................................................................................................	20	1	1563.00	1168.00	1.00	394.00
........................................TGGCAGTGTGGTTAGCTGATTG...............................................................................................................	22	1	1560.00	1128.00	2.00	430.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	1526.00	476.00	4.00	1046.00
.........................................TGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	1468.00	519.00	0.00	949.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	1457.00	534.00	3.00	920.00
........................................TGGCAGTGTGGTTAGCTGCTTG...............................................................................................................	22	1	1450.00	1184.00	2.00	264.00
........................................TGGCAGTGTGGTTAGCTGGAA................................................................................................................	21	1	1415.00	1080.00	2.00	333.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	1414.00	553.00	7.00	854.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	1283.00	518.00	2.00	763.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	1263.00	587.00	12.00	664.00
........................................TGGCAGTGTGGTTAGCTGCT.................................................................................................................	20	1	1256.00	1106.00	0.00	150.00
........................................TGGCCGTGTGGTTAGCTGGTT................................................................................................................	21	1	1244.00	515.00	0.00	729.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	1239.00	563.00	3.00	673.00
........................................TGTCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1220.00	328.00	0.00	892.00
........................................TTGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1183.00	287.00	0.00	896.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1167.00	475.00	1.00	691.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	1166.00	284.00	0.00	882.00
........................................TGGCAGTGTGGTTAGCTGGTAA...............................................................................................................	22	1	1116.00	779.00	0.00	337.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	1116.00	292.00	1.00	823.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	1057.00	760.00	2.00	295.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	1047.00	742.00	3.00	302.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGAT...........................................................................................................	26	1	1015.00	704.00	1.00	310.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	1002.00	368.00	3.00	631.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	963.00	284.00	3.00	676.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	957.00	362.00	1.00	594.00
........................................TGGCAGTGTGGTTAGCTGGTTGAT.............................................................................................................	24	1	943.00	509.00	1.00	433.00
........................................TCGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	940.00	349.00	2.00	589.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGTT...........................................................................................................	26	1	926.00	427.00	3.00	496.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	900.00	406.00	3.00	491.00
.........................................GGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	893.00	325.00	2.00	566.00
........................................TGGCAGTGTGGTTAGCTGGCTGTG.............................................................................................................	24	1	887.00	260.00	10.00	617.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	881.00	351.00	3.00	527.00
........................................TGGCAGTGTGGTTAGCTGGTAT...............................................................................................................	22	1	880.00	504.00	0.00	376.00
........................................TGGCAGTGTGGTTAGCTGGTTTA..............................................................................................................	23	1	871.00	403.00	0.00	468.00
........................................TGGCAGAGTGGTTAGCTGGTT................................................................................................................	21	1	843.00	65.00	0.00	778.00
........................................TGGCAATGTGGTTAGCTGGTT................................................................................................................	21	1	822.00	89.00	0.00	733.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGAAA..........................................................................................................	27	1	807.00	737.00	0.00	70.00
........................................TGGAAGTGTGGTTAGCTGGTT................................................................................................................	21	1	806.00	171.00	1.00	634.00
.......................................CTGGCAGTGTGGTTAGCTGGTT................................................................................................................	22	1	792.00	296.00	1.00	495.00
........................................TGGCAGTGCGGTTAGCTGGTTGTG.............................................................................................................	24	1	789.00	319.00	8.00	462.00
........................................TGGCAGTATGGTTAGCTGGTT................................................................................................................	21	1	770.00	89.00	0.00	681.00
.........................................TGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	23	1	770.00	188.00	9.00	573.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	759.00	281.00	1.00	477.00
........................................TGGCAGTGTGTTTAGCTGGTTGTG.............................................................................................................	24	1	747.00	170.00	14.00	563.00
........................................TGCCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	743.00	216.00	1.00	526.00
........................................TGGCAGTGTGGTTAGCTGGTTAT..............................................................................................................	23	1	732.00	441.00	0.00	291.00
........................................TGGCAGTGTGTTTAGCTGGTT................................................................................................................	21	1	732.00	241.00	1.00	490.00
........................................TGGCAGCGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	727.00	279.00	13.00	435.00
........................................TGGCCGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	727.00	285.00	5.00	437.00
........................................TGGCAGTGTAGTTAGCTGGTT................................................................................................................	21	1	725.00	116.00	0.00	609.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	724.00	114.00	1.00	609.00
.........................................TGCAGTGTGGTTAGCTGGTTG...............................................................................................................	21	1	720.00	208.00	5.00	507.00
........................................TGGCAGTGTGGTTAGCTGGTTGAA.............................................................................................................	24	1	718.00	460.00	0.00	258.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGTA...........................................................................................................	26	1	695.00	420.00	2.00	273.00
........................................TGGCAGTGTTGTTAGCTGGTT................................................................................................................	21	1	685.00	108.00	1.00	576.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	683.00	242.00	3.00	438.00
........................................CGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	680.00	223.00	6.00	451.00
........................................TGGCAGTGTGGTTAGCTGGTTGTC.............................................................................................................	24	1	662.00	248.00	13.00	401.00
........................................TTGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	658.00	150.00	4.00	504.00
........................................TGGCAGTGTGGTTAGCTGGTTGCG.............................................................................................................	24	1	657.00	198.00	5.00	454.00
........................................TGGCAGTGTGGTTAGCTGTA.................................................................................................................	20	1	642.00	355.00	1.00	286.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	635.00	243.00	3.00	389.00
........................................TGGCAGTGTGGTTAGCTAGTT................................................................................................................	21	1	625.00	139.00	1.00	485.00
........................................TGGCGGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	624.00	205.00	10.00	409.00
........................................TGGCAGTGTGGTTAGCTxGTTGTG.............................................................................................................	23	1	615.00	125.00	10.00	480.00
........................................TGGCAGTGTGGTCAGCTGGTT................................................................................................................	21	1	613.00	273.00	1.00	339.00
........................................TGGCAGTGTGGTTAGCTGCTTGTGA............................................................................................................	25	1	612.00	595.00	0.00	17.00

droYak2

C--AATCAA-GTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTA-----------CT--C-------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	579221.00	21.00	172330.00	116002.00	288829.00	2039.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	319249.00	54.00	83494.00	96890.00	137519.00	1292.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	207976.00	437.00	46350.00	84460.00	76309.00	420.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	145287.00	9.00	43367.00	39737.00	62045.00	129.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	64892.00	0.00	28743.00	7486.00	28547.00	116.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	64587.00	12.00	15639.00	24285.00	24250.00	401.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	42421.00	3.00	12368.00	13612.00	16371.00	67.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	25772.00	0.00	18253.00	83.00	7433.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	16503.00	11.00	7986.00	69.00	8434.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	14300.00	9.00	7926.00	430.00	5915.00	20.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	12245.00	1.00	8091.00	144.00	4008.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	11746.00	1.00	1961.00	5658.00	4097.00	29.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	8452.00	71.00	414.00	248.00	495.00	7224.00
........................................TGGCAGTGTGGTTAGCTTGTTT...............................................................................................................	22	1	8208.00	1.00	6746.00	3.00	1458.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTT.............................................................................................................	24	1	8072.00	3.00	5663.00	44.00	2362.00	0.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	7605.00	0.00	5679.00	38.00	1888.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	7555.00	0.00	2223.00	2244.00	3080.00	8.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	6602.00	1.00	822.00	4337.00	1434.00	8.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	5753.00	0.00	899.00	89.00	1156.00	3609.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	5741.00	0.00	2929.00	290.00	2516.00	6.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	5003.00	3.00	3256.00	72.00	1671.00	1.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	4762.00	0.00	2918.00	190.00	1629.00	25.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	4539.00	0.00	1062.00	136.00	3340.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	3211.00	0.00	1069.00	708.00	1425.00	9.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	2846.00	0.00	934.00	496.00	1384.00	32.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	2737.00	0.00	1213.00	77.00	1443.00	4.00
........................................TGGCAGTGTGGTTAGCTTGTTGTT.............................................................................................................	24	1	2641.00	0.00	2137.00	4.00	500.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTTTG.............................................................................................................	24	1	2614.00	1.00	1921.00	1.00	691.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGTG...............................................................................................................	22	1	2602.00	0.00	1500.00	172.00	914.00	16.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-TC..........................................................................	26	1	2378.00	0.00	76.00	33.00	153.00	2116.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	2311.00	0.00	543.00	894.00	871.00	3.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	2275.00	0.00	409.00	66.00	1800.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTT................................................................................................................	21	1	2253.00	0.00	500.00	13.00	1740.00	0.00
........................................TGGCAGTGTGGTTAGCTTG..................................................................................................................	19	1	2211.00	0.00	1482.00	78.00	651.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	2113.00	0.00	570.00	403.00	1135.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	1964.00	0.00	616.00	166.00	1175.00	7.00
........................................TGGCAGGGTGGTTAGCTGGTT................................................................................................................	21	1	1927.00	0.00	224.00	44.00	1655.00	4.00
........................................TGGCAGTGTGGTTAGATGGTT................................................................................................................	21	1	1915.00	0.00	484.00	29.00	1402.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTGT..............................................................................................................	23	1	1806.00	1.00	1270.00	31.00	503.00	1.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	1750.00	0.00	447.00	150.00	1122.00	31.00
........................................TGGCAGTGTGGTTCGCTGGTT................................................................................................................	21	1	1691.00	0.00	205.00	34.00	1452.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-............................................................................	24	1	1465.00	0.00	180.00	159.00	269.00	857.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	1372.00	0.00	273.00	144.00	950.00	5.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----AT-T...........................................................................	25	1	1281.00	0.00	143.00	130.00	289.00	719.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	1270.00	0.00	294.00	397.00	577.00	2.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	1222.00	0.00	164.00	16.00	1039.00	3.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	1143.00	0.00	192.00	87.00	863.00	1.00
........................................TGGCAGTGTGGTTAGCTGTTTT...............................................................................................................	22	1	1103.00	0.00	463.00	7.00	633.00	0.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	1085.00	0.00	293.00	370.00	420.00	2.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	1073.00	0.00	430.00	115.00	528.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1062.00	0.00	253.00	187.00	618.00	4.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	1051.00	0.00	292.00	104.00	655.00	0.00
........................................TGGCAGTGTGGTTAGCTGGG.................................................................................................................	20	1	1042.00	0.00	393.00	95.00	534.00	20.00
................................................................TAGCCAA-TT--ATTGC-CGTTGAC....................................................................................	21	1	1041.00	0.00	26.00	17.00	45.00	953.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	1022.00	1.00	314.00	138.00	505.00	64.00
........................................TGGCAGTGTGGGTAGCTGGTTG...............................................................................................................	22	1	1011.00	0.00	213.00	10.00	788.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	1008.00	0.00	215.00	177.00	615.00	1.00
........................................TGGCAGTGTGGTTAGCTTGTTTT..............................................................................................................	23	1	957.00	0.00	781.00	0.00	176.00	0.00
........................................TGGCAGTGTGGTTATCTGGTTG...............................................................................................................	22	1	930.00	0.00	359.00	68.00	499.00	4.00
........................................TGGCAGTGTGGTTAGCTGGGTGTG.............................................................................................................	24	1	929.00	1.00	486.00	103.00	335.00	4.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	917.00	1.00	200.00	530.00	180.00	6.00
........................................TGGCAGGGTGGTTAGCTGGTTG...............................................................................................................	22	1	915.00	0.00	115.00	70.00	728.00	2.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	901.00	0.00	184.00	86.00	630.00	1.00
........................................TGGCAGTGTGGTTAACTGGTT................................................................................................................	21	1	901.00	0.00	351.00	51.00	497.00	2.00
........................................TGGCCGTGTGGTTAGCTGGTT................................................................................................................	21	1	893.00	0.00	152.00	60.00	681.00	0.00
........................................TGGCAGTGTGGTTGGCTGGTT................................................................................................................	21	1	866.00	0.00	357.00	42.00	467.00	0.00
........................................TGGCAGTGTTGTTAGCTGGTT................................................................................................................	21	1	863.00	0.00	401.00	34.00	422.00	6.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	840.00	0.00	129.00	316.00	377.00	18.00
........................................AGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	824.00	0.00	146.00	64.00	613.00	1.00
........................................TGGCAGTGTGGTTATCTTGTT................................................................................................................	21	1	824.00	0.00	607.00	0.00	217.00	0.00
................................................................TAGCCAA-TT--ATTGC-CGTTGACA----...............................................................................	22	1	814.00	0.00	176.00	73.00	246.00	319.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	799.00	0.00	484.00	98.00	217.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTTT............................................................................................................	25	1	798.00	0.00	298.00	62.00	438.00	0.00
........................................TGGCAGTGTGGTTCGCTGGTTG...............................................................................................................	22	1	788.00	0.00	112.00	33.00	643.00	0.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	757.00	0.00	189.00	19.00	549.00	0.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	714.00	0.00	146.00	101.00	462.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTAA..............................................................................................................	23	1	671.00	0.00	143.00	256.00	269.00	3.00
........................................TGGCAGTGTGGTTAGCTGGCTGTG.............................................................................................................	24	1	661.00	2.00	116.00	296.00	247.00	0.00
........................................TGGCAGTGTAGTTAGCTGGTT................................................................................................................	21	1	655.00	0.00	492.00	38.00	122.00	3.00
........................................TGGCAGTGTGGTTATCTGGTTT...............................................................................................................	22	1	645.00	0.00	399.00	8.00	237.00	1.00
........................................TGGCAGTGTGGTTAGCTAGTT................................................................................................................	21	1	634.00	0.00	446.00	54.00	133.00	1.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	632.00	0.00	121.00	110.00	400.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	632.00	2.00	105.00	115.00	410.00	0.00
........................................TGGCAGTGTGGTTCGCTGGTTGTG.............................................................................................................	24	1	606.00	1.00	76.00	16.00	513.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTTGTG.............................................................................................................	24	1	579.00	0.00	148.00	10.00	421.00	0.00
........................................TGGCAGTGTGGTTATCTGGT.................................................................................................................	20	1	577.00	0.00	246.00	34.00	295.00	2.00
........................................TGGCAGTGTGGTTAGCCGGTTG...............................................................................................................	22	1	564.00	1.00	212.00	84.00	267.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	554.00	0.00	143.00	72.00	301.00	38.00
........................................TGGCAGTGTGGTTAGCTGATT................................................................................................................	21	1	552.00	0.00	226.00	48.00	278.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGGG.............................................................................................................	24	1	545.00	0.00	92.00	46.00	404.00	3.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	540.00	0.00	106.00	159.00	272.00	3.00
........................................TGGCAGTGTGGTTAGCTGGGTT...............................................................................................................	22	1	523.00	0.00	331.00	25.00	165.00	2.00
........................................CGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	515.00	0.00	98.00	157.00	260.00	0.00
........................................TGGCAGTGGGGTTAGCTGGTTG...............................................................................................................	22	1	513.00	0.00	65.00	15.00	433.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTTG...............................................................................................................	22	1	498.00	0.00	111.00	89.00	298.00	0.00
........................................TGGCAGTGTGGGTAGCTGGT.................................................................................................................	20	1	497.00	0.00	117.00	4.00	376.00	0.00
........................................TGGCAGTGTGTTTAGCTGGTT................................................................................................................	21	1	495.00	0.00	67.00	65.00	359.00	4.00
........................................TGGCAGTGTGGTTAGCGGGTT................................................................................................................	21	1	494.00	0.00	102.00	14.00	378.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTTTG.............................................................................................................	24	1	490.00	0.00	147.00	0.00	343.00	0.00
.......................................CTGGCAGTGTGGTTAGCTGGTT................................................................................................................	22	1	488.00	0.00	114.00	125.00	249.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	488.00	0.00	56.00	55.00	376.00	1.00

droEre2

C--AATCAA-GTATTCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TC--ATTGC-TTGTGACA----AC-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTA-----------CT--C-------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1020222.00	160.00	163165.00	0.00	856897.00
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	951230.00	79.00	255144.00	0.00	696007.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	620607.00	438.00	62545.00	0.00	557624.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	189305.00	17.00	43899.00	0.00	145389.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	162809.00	30.00	30794.00	0.00	131985.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	60196.00	3.00	6861.00	0.00	53332.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	58978.00	30.00	27011.00	0.00	31937.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	15913.00	3.00	1801.00	0.00	14109.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	15079.00	15.00	7131.00	0.00	7933.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	12210.00	15.00	4984.00	0.00	7211.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	10889.00	98.00	8904.00	0.00	1887.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	10579.00	1.00	3125.00	0.00	7453.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	8075.00	69.00	5134.00	0.00	2872.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	7988.00	3.00	886.00	0.00	7099.00
........................................TGGCAGTGTTGTTAGCTGGTTG...............................................................................................................	22	1	7545.00	0.00	171.00	0.00	7374.00
........................................TTGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	7521.00	0.00	52.00	0.00	7469.00
........................................TGGCAGTGTTGTTAGCTGGTT................................................................................................................	21	1	7092.00	2.00	337.00	0.00	6753.00
........................................TGGCAGTGTGGTTAGCTGGTTGCG.............................................................................................................	24	1	7077.00	2.00	109.00	0.00	6966.00
........................................TTGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	6925.00	0.00	73.00	0.00	6852.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	6494.00	0.00	47.00	0.00	6447.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	6092.00	103.00	561.00	0.00	5428.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	5636.00	6.00	3676.00	0.00	1954.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	5611.00	37.00	1338.00	0.00	4236.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	5524.00	0.00	1753.00	0.00	3771.00
........................................TGGCAGTGTTGTTAGCTGGTTGTG.............................................................................................................	24	1	5224.00	2.00	35.00	0.00	5187.00
........................................TGGCAGTGTGGTTATCTGGTTG...............................................................................................................	22	1	4902.00	2.00	766.00	0.00	4134.00
........................................TTGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	4886.00	0.00	16.00	0.00	4870.00
........................................TGGCAGTGTGGTTAGCTGGTTGAG.............................................................................................................	24	1	4557.00	0.00	18.00	0.00	4539.00
........................................TGGAAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	4500.00	0.00	40.00	0.00	4460.00
........................................TGGCAGTGTGGTTAGCTGGTTGGG.............................................................................................................	24	1	4499.00	0.00	459.00	0.00	4040.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	4350.00	6.00	3572.00	0.00	772.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	4093.00	2.00	1555.00	0.00	2536.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	3926.00	6.00	2496.00	0.00	1424.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	3646.00	1.00	537.00	0.00	3108.00
........................................TGTCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	3531.00	1.00	50.00	0.00	3480.00
........................................TGGAAGTGTGGTTAGCTGGTT................................................................................................................	21	1	3517.00	0.00	92.00	0.00	3425.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	3499.00	2.00	587.00	0.00	2910.00
........................................TGGCAGTGTGGTTAGATGGTT................................................................................................................	21	1	3456.00	0.00	1022.00	0.00	2434.00
........................................TGTCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	3232.00	0.00	79.00	0.00	3153.00
........................................TGGCAGTGTGGTTATCTGGTTGTG.............................................................................................................	24	1	2962.00	4.00	172.00	0.00	2786.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	2760.00	0.00	898.00	0.00	1862.00
........................................TGGAAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	2702.00	1.00	12.00	0.00	2689.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	2475.00	1.00	866.00	0.00	1608.00
........................................TGGCAGTGTGGTTAGCTGGTTTTT.............................................................................................................	24	1	2442.00	47.00	2322.00	0.00	73.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	2437.00	0.00	308.00	0.00	2129.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	2359.00	1.00	243.00	0.00	2115.00
........................................TGGCAGTGTGGTTAGATGGTTGTG.............................................................................................................	24	1	2313.00	0.00	160.00	0.00	2153.00
........................................TGGCAGTGTGGTTAGCTTGTTT...............................................................................................................	22	1	2281.00	1.00	1976.00	0.00	304.00
........................................TGTCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	2187.00	1.00	22.00	0.00	2164.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	2156.00	0.00	907.00	0.00	1249.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	2079.00	4.00	826.00	0.00	1249.00
........................................TGGCAGTGTGGTTAGCTTG..................................................................................................................	19	1	2022.00	0.00	269.00	0.00	1753.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	1638.00	1.00	1405.00	0.00	232.00
........................................TGGCAGTGTGGTTAGCTTGTTGT..............................................................................................................	23	1	1608.00	2.00	660.00	0.00	946.00
.........................................TGCAGTGTGGTTAGCTGGTTG...............................................................................................................	21	1	1604.00	1.00	38.00	0.00	1565.00
........................................TGACAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1584.00	0.00	83.00	0.00	1501.00
........................................TGGCAGTGTGTTTAGCTGGTTG...............................................................................................................	22	1	1552.00	0.00	135.00	0.00	1417.00
........................................CGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1506.00	1.00	188.00	0.00	1317.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	1450.00	2.00	311.00	0.00	1137.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	1446.00	0.00	524.00	0.00	922.00
.........................................GGCAGTGTGGTTAGCTGGTTG...............................................................................................................	21	1	1415.00	0.00	151.00	0.00	1264.00
........................................TGACAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1406.00	0.00	120.00	0.00	1286.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1395.00	0.00	320.00	0.00	1075.00
........................................TGGCAGTGTGTTTAGCTGGTT................................................................................................................	21	1	1393.00	1.00	329.00	0.00	1063.00
.........................................TGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	1360.00	0.00	42.00	0.00	1318.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	1354.00	0.00	248.00	0.00	1106.00
........................................TGGCAGTGTGTTTAGCTGGTTGTG.............................................................................................................	24	1	1345.00	1.00	38.00	0.00	1306.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	1342.00	1.00	389.00	0.00	952.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	1338.00	1.00	374.00	0.00	963.00
........................................TGGCAGTGTGGTTAGCTGGGTG...............................................................................................................	22	1	1334.00	3.00	1031.00	0.00	300.00
........................................TGCCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1294.00	0.00	27.00	0.00	1267.00
........................................TGGCGGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1288.00	0.00	180.00	0.00	1108.00
.........................................GGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	1278.00	0.00	257.00	0.00	1021.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	1274.00	1.00	209.00	0.00	1064.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	1271.00	0.00	203.00	0.00	1068.00
........................................TTGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	1269.00	0.00	14.00	0.00	1255.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	1262.00	0.00	333.00	0.00	929.00
........................................TGGCATTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1235.00	1.00	24.00	0.00	1210.00
................................................................TAGCCAA-TC--ATTGC-TTGTGACA----AC-T...........................................................................	25	1	1232.00	0.00	86.00	0.00	1146.00
........................................TGGCAGTGTTGTTAGCTGGT.................................................................................................................	20	1	1210.00	0.00	53.00	0.00	1157.00
........................................TGGCATTGTGGTTAGCTGGTT................................................................................................................	21	1	1210.00	2.00	44.00	0.00	1164.00
........................................TGGCAGTTTGGTTAGCTGGTTG...............................................................................................................	22	1	1195.00	0.00	82.00	0.00	1113.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	1188.00	0.00	302.00	0.00	886.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1184.00	0.00	547.00	0.00	637.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	1180.00	0.00	164.00	0.00	1016.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	1170.00	0.00	319.00	0.00	851.00
........................................TGGCCGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1165.00	0.00	117.00	0.00	1048.00
........................................TGGCAGTGTGGTTAGCTGGTTGG..............................................................................................................	23	1	1151.00	1.00	141.00	0.00	1009.00
........................................TAGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1144.00	0.00	371.00	0.00	773.00
........................................TGGCAGTTTGGTTAGCTGGTT................................................................................................................	21	1	1142.00	0.00	186.00	0.00	956.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	1132.00	0.00	336.00	0.00	796.00
........................................TGGCAGTGTGGTTAGCCGGTTG...............................................................................................................	22	1	1131.00	1.00	222.00	0.00	908.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	1129.00	0.00	356.00	0.00	773.00
........................................TGGCAGTGTGGTTAGCTAGTT................................................................................................................	21	1	1122.00	0.00	668.00	0.00	454.00
........................................TTGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	1121.00	0.00	13.00	0.00	1108.00
........................................TGGCAGTGTAGTTAGCTGGTT................................................................................................................	21	1	1119.00	0.00	605.00	0.00	514.00
........................................TGGCAGTGTGGTTACCTGGTTG...............................................................................................................	22	1	1114.00	1.00	159.00	0.00	954.00
........................................TGGCAGTGTGGCTAGCTGGTTG...............................................................................................................	22	1	1106.00	0.00	176.00	0.00	930.00
........................................TGGCAGTGTTGTTAGCTGGTTGT..............................................................................................................	23	1	1078.00	0.00	24.00	0.00	1054.00
........................................TGCCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1049.00	0.00	44.00	0.00	1005.00
........................................TGGCAGTGTGGTTAGCTAGTTG...............................................................................................................	22	1	1037.00	0.00	405.00	0.00	632.00

droEug1

A--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT---TTGC-CGTTGAAA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATAATGA----TA----G---TTTA-----T

Size

Hit Count

Total Norm

droBia1

C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAGGCTAATGCAACGATA--------------A-------------

Size

Hit Count

Total Norm

droTak1

CACAATCAA-GAAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAATGCAACGATAATGG----TATT--G-------------

Size

Hit Count

Total Norm

droEle1

C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATAATGC----TATA--T-------------

Size

Hit Count

Total Norm

droRho1

C--AATCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACA----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGATA-----------A--T-------------

Size

Hit Count

Total Norm

droFic1

C--AATCAA-GTTAACT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGACAA-TA--CTTGC-CACTGAAA----GT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTATAATGC----TAAT--CAGGGTAATAACAA

Size

Hit Count

Total Norm

droKik1

A--ATCCAA-GTAACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGCAGTCA----ATCCCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACGTT-----------TA--A-------------

Size

Hit Count

Total Norm

droAna3

T--AATTCA-GTTACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCGTTGGCAATTAAT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAACTTA-----------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	334515.00	136792.00	57566.00	140134.00	23.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	254204.00	63723.00	165963.00	24469.00	49.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	150906.00	66764.00	28186.00	55951.00	5.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	150831.00	58188.00	58456.00	34186.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	147593.00	63511.00	43326.00	40746.00	10.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	26230.00	12465.00	2146.00	11613.00	6.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	18318.00	10125.00	2367.00	5826.00	0.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	13272.00	464.00	11063.00	1745.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	11823.00	94.00	11216.00	502.00	11.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	11804.00	3615.00	5439.00	2750.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	8134.00	3770.00	3343.00	1021.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	8086.00	4436.00	1453.00	2197.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	4278.00	2784.00	378.00	1116.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	3627.00	735.00	1221.00	1661.00	10.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	3494.00	1871.00	630.00	993.00	0.00
........................................TGTCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	3312.00	193.00	3114.00	5.00	0.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	3003.00	1442.00	926.00	635.00	0.00
........................................TGGCAGTGTGGTTATCTGGTTGTG.............................................................................................................	24	1	2820.00	462.00	2306.00	51.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	2767.00	2071.00	354.00	342.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	2710.00	100.00	180.00	2420.00	10.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	2415.00	1305.00	850.00	260.00	0.00
........................................TGGCAGTGTGGTTAGATGGTT................................................................................................................	21	1	2246.00	1050.00	344.00	852.00	0.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	2015.00	606.00	600.00	809.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTG................................................................................................................	21	1	1982.00	976.00	653.00	353.00	0.00
........................................TGTCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1964.00	654.00	1246.00	63.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	1944.00	866.00	104.00	973.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTAGTG.............................................................................................................	24	1	1801.00	744.00	1054.00	3.00	0.00
........................................TGGCAGTGTGGTTAGATGGTTGTG.............................................................................................................	24	1	1649.00	474.00	1037.00	138.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	1457.00	801.00	221.00	435.00	0.00
........................................TGGCAGTGTGGTTAGCTTG..................................................................................................................	19	1	1436.00	313.00	698.00	424.00	1.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	1431.00	182.00	283.00	964.00	2.00
........................................TGGCAGTGTGGTTATCTGG..................................................................................................................	19	1	1413.00	432.00	752.00	229.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTT................................................................................................................	21	1	1351.00	66.00	15.00	1270.00	0.00
........................................TGGAAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	1316.00	253.00	1037.00	26.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	1313.00	627.00	65.00	621.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	1287.00	225.00	77.00	985.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTT................................................................................................................	21	1	1278.00	404.00	2.00	872.00	0.00
........................................TGTCAGTGTGGTTAGCTGG..................................................................................................................	19	1	1277.00	231.00	1023.00	23.00	0.00
........................................TGGCAGTGTGGTTATCTGGT.................................................................................................................	20	1	1266.00	626.00	428.00	212.00	0.00
........................................TGGAAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1254.00	616.00	401.00	237.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTCGTG.............................................................................................................	24	1	1251.00	489.00	725.00	37.00	0.00
........................................TGGCAGTGTGGTTATCTGGTTG...............................................................................................................	22	1	1145.00	429.00	559.00	156.00	1.00
........................................TGGCAGTGTGGTTAGATGGT.................................................................................................................	20	1	1087.00	527.00	164.00	396.00	0.00
........................................TGGCAGTGTGGTTAGATGG..................................................................................................................	19	1	1086.00	543.00	383.00	160.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTAG...............................................................................................................	22	1	1081.00	705.00	345.00	31.00	0.00
........................................TGTCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1061.00	214.00	824.00	23.00	0.00
........................................TGGCAGTGTGGATAGCTGGTT................................................................................................................	21	1	1009.00	877.00	8.00	124.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	980.00	193.00	67.00	720.00	0.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	964.00	157.00	49.00	758.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	962.00	309.00	143.00	508.00	2.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	952.00	479.00	258.00	215.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCGC...................................................	22	1	915.00	26.00	839.00	50.00	0.00
................................................................TAGCTGG-------TGCTCGTTGGCAATT................................................................................	22	1	903.00	33.00	861.00	9.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	858.00	237.00	86.00	535.00	0.00
........................................TGTCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	852.00	284.00	533.00	35.00	0.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	840.00	534.00	176.00	130.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	823.00	519.00	213.00	91.00	0.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	813.00	103.00	201.00	506.00	3.00
........................................TGGAAGTGTGGTTAGCTGG..................................................................................................................	19	1	812.00	293.00	458.00	61.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	811.00	63.00	24.00	724.00	0.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	800.00	37.00	6.00	757.00	0.00
........................................AGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	795.00	80.00	26.00	689.00	0.00
........................................GGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	768.00	118.00	25.00	625.00	0.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	734.00	130.00	73.00	531.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTT.............................................................................................................	24	1	714.00	158.00	27.00	514.00	15.00
........................................TTGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	706.00	428.00	183.00	95.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGC............................................................................................................	25	1	686.00	273.00	377.00	36.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTCG...............................................................................................................	22	1	683.00	467.00	157.00	59.00	0.00
........................................TGGCAGTGTGGTCAGCTGGTT................................................................................................................	21	1	672.00	497.00	55.00	120.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	656.00	171.00	66.00	419.00	0.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	651.00	365.00	80.00	206.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	636.00	97.00	54.00	485.00	0.00
........................................TGGCAGTGTGATTAGCTGGTT................................................................................................................	21	1	635.00	498.00	31.00	106.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	624.00	72.00	148.00	404.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	622.00	57.00	389.00	167.00	9.00
........................................TTGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	621.00	181.00	423.00	17.00	0.00
................................................................TAGCTGG-------TGCTCGTTGGCAATTAAT-............................................................................	25	1	615.00	13.00	599.00	3.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	612.00	133.00	82.00	396.00	1.00
........................................TGGAAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	608.00	254.00	296.00	58.00	0.00
........................................TGGAAGTGTGGTTAGCTGGT.................................................................................................................	20	1	607.00	298.00	211.00	98.00	0.00
........................................TGGCAGGGTGGTTAGCTGGT.................................................................................................................	20	1	563.00	27.00	9.00	527.00	0.00
.....................................................................................................AGCCACTATCTTCACTGCCGCC..................................................	22	1	550.00	2.00	530.00	16.00	2.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	550.00	131.00	63.00	355.00	1.00
........................................TGGCAGTGTGGCTAGCTGGTTGTG.............................................................................................................	24	1	545.00	296.00	178.00	71.00	0.00
........................................TGGCAGTGTGGTTAGCTGGG.................................................................................................................	20	1	541.00	50.00	16.00	475.00	0.00
........................................TGGCAGTGTGGTAAGCTGGTT................................................................................................................	21	1	541.00	518.00	2.00	21.00	0.00
........................................TGGCAGTGTTGTTAGCTGGTTGTG.............................................................................................................	24	1	533.00	60.00	450.00	23.00	0.00
........................................TGGCAGTGTGGCTAGCTGGT.................................................................................................................	20	1	520.00	260.00	29.00	231.00	0.00
........................................TGGCAGTGTGGTTAGCTT...................................................................................................................	18	1	512.00	17.00	327.00	168.00	0.00
........................................TGGCAGTGTTGTTAGCTGGTT................................................................................................................	21	1	506.00	162.00	180.00	163.00	1.00
........................................TGGCAGTGTGGGTAGCTGGT.................................................................................................................	20	1	495.00	177.00	3.00	315.00	0.00
........................................TGGCAGTGTGGTTAGTTGGTT................................................................................................................	21	1	494.00	244.00	43.00	207.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTGTG.............................................................................................................	24	1	474.00	117.00	241.00	116.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTAT...............................................................................................................	22	1	468.00	283.00	39.00	146.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTAA..............................................................................................................	23	1	467.00	351.00	42.00	74.00	0.00
........................................TGGCAGAGTGGTTAGCTGGTT................................................................................................................	21	1	465.00	109.00	5.00	351.00	0.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	462.00	84.00	60.00	318.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	461.00	81.00	286.00	94.00	0.00
........................................TAGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	457.00	177.00	242.00	38.00	0.00
........................................TGGCAGTGTGTTTAGCTGGTTGTG.............................................................................................................	24	1	454.00	104.00	341.00	9.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTA..............................................................................................................	23	1	451.00	302.00	34.00	115.00	0.00

droBip1

C--AAT------AACCT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCTTTGGCAATTAAT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAACTTA-----------TT--C-------------

Size

Hit Count

Total Norm

dp4

A--AATCCA-GAAAATT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACC----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATA--------------A-------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	300918.00	140779.00	36.00	160025.00	78.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	106434.00	57317.00	11.00	49100.00	6.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	100393.00	42759.00	69.00	57549.00	16.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	98925.00	65150.00	289.00	33484.00	2.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	50087.00	27262.00	4.00	22819.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	17693.00	8391.00	12.00	9285.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	14108.00	6688.00	2.00	7416.00	2.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	6525.00	2759.00	0.00	3752.00	14.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	4863.00	4100.00	4.00	759.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	2840.00	1593.00	0.00	1242.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	1992.00	71.00	17.00	1904.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	1745.00	359.00	10.00	1376.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	1664.00	1032.00	0.00	632.00	0.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	1447.00	768.00	0.00	679.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	1353.00	1119.00	1.00	233.00	0.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	1166.00	511.00	0.00	629.00	26.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	1000.00	107.00	0.00	462.00	431.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	910.00	409.00	0.00	500.00	1.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	740.00	45.00	0.00	695.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	735.00	268.00	53.00	397.00	17.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	630.00	184.00	0.00	446.00	0.00
........................................TGACAGTGTGGTTAGCTGGTT................................................................................................................	21	1	619.00	54.00	0.00	565.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	600.00	417.00	0.00	183.00	0.00
........................................TGGCAGTGTGGTTAGATGGTT................................................................................................................	21	1	594.00	49.00	1.00	544.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTT................................................................................................................	21	1	566.00	7.00	0.00	559.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	564.00	220.00	0.00	343.00	1.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	531.00	138.00	0.00	393.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	526.00	155.00	0.00	371.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	470.00	139.00	0.00	331.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	468.00	131.00	0.00	337.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	464.00	16.00	0.00	446.00	2.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	457.00	156.00	1.00	300.00	0.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	451.00	148.00	0.00	303.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	430.00	126.00	0.00	304.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	430.00	158.00	1.00	271.00	0.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	423.00	119.00	0.00	304.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTT.............................................................................................................	24	1	423.00	66.00	4.00	353.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTT................................................................................................................	21	1	413.00	4.00	0.00	409.00	0.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	404.00	221.00	0.00	183.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	390.00	156.00	0.00	234.00	0.00
........................................TGCCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	379.00	73.00	0.00	306.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	375.00	20.00	3.00	352.00	0.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	334.00	138.00	0.00	196.00	0.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	320.00	14.00	0.00	306.00	0.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	298.00	97.00	0.00	201.00	0.00
.........................................GGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	290.00	130.00	0.00	160.00	0.00
........................................TGTCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	289.00	111.00	0.00	178.00	0.00
........................................TGGCAGTGTGGTTGGCTGGTT................................................................................................................	21	1	261.00	77.00	0.00	184.00	0.00
.......................................CTGGCAGTGTGGTTAGCTGGTT................................................................................................................	22	1	258.00	129.00	0.00	129.00	0.00
........................................TGGCAGTGTGGTTAACTGGTT................................................................................................................	21	1	256.00	51.00	0.00	204.00	1.00
........................................AGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	256.00	53.00	0.00	203.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	254.00	186.00	0.00	68.00	0.00
........................................TGGCAGTGTGGTTAGCTGGG.................................................................................................................	20	1	249.00	20.00	0.00	229.00	0.00
........................................TGGCAGTGTGGTTCGCTGGTT................................................................................................................	21	1	243.00	65.00	0.00	178.00	0.00
........................................TGGCAGTGTGGTCAGCTGGTT................................................................................................................	21	1	239.00	86.00	0.00	153.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	233.00	48.00	0.00	185.00	0.00
........................................TGGCAGTGTGGTTAGCTGATT................................................................................................................	21	1	226.00	51.00	0.00	175.00	0.00
........................................TGGCAGTGTGGTTAGCTAGTT................................................................................................................	21	1	226.00	46.00	0.00	180.00	0.00
........................................TGACAGTGTGGTTAGCTGGT.................................................................................................................	20	1	222.00	27.00	0.00	195.00	0.00
........................................GGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	215.00	43.00	0.00	172.00	0.00
........................................TGACAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	214.00	9.00	0.00	205.00	0.00
........................................TGGCAGTGTAGTTAGCTGGTT................................................................................................................	21	1	214.00	49.00	0.00	165.00	0.00
........................................TGGCAGTGTGGTTAGCTTT..................................................................................................................	19	1	214.00	114.00	0.00	100.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGTG...............................................................................................................	22	1	213.00	5.00	2.00	206.00	0.00
........................................TGGCAGTGTGGTTAGCTGTA.................................................................................................................	20	1	211.00	70.00	0.00	116.00	25.00
........................................TGGCAGGGTGGTTAGCTGGTTG...............................................................................................................	22	1	195.00	4.00	0.00	191.00	0.00
........................................TGGCAGTGTGGTTAGCTTG..................................................................................................................	19	1	194.00	12.00	0.00	182.00	0.00
........................................TGGCAGTGTGTTTAGCTGGTT................................................................................................................	21	1	190.00	136.00	0.00	54.00	0.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	186.00	17.00	0.00	169.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	186.00	35.00	4.00	147.00	0.00
........................................TGGCAGTGTGGTTAGATGGT.................................................................................................................	20	1	186.00	25.00	0.00	161.00	0.00
........................................TGGCAGGGTGGTTAGCTGGT.................................................................................................................	20	1	185.00	5.00	0.00	180.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTAA..............................................................................................................	23	1	180.00	127.00	0.00	53.00	0.00
........................................TGGCAGTGTGGTTACCTGGT.................................................................................................................	20	1	180.00	69.00	0.00	111.00	0.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	178.00	19.00	0.00	159.00	0.00
........................................TGACAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	177.00	35.00	0.00	142.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	172.00	35.00	0.00	137.00	0.00
........................................TGGCAGCGTGGTTAGCTGGT.................................................................................................................	20	1	171.00	69.00	0.00	102.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	171.00	78.00	0.00	93.00	0.00
.........................................TGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	170.00	138.00	0.00	30.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGTT...........................................................................................................	26	1	168.00	120.00	0.00	48.00	0.00
........................................TGGCAGTGTGGCTAGCTGGT.................................................................................................................	20	1	166.00	47.00	0.00	119.00	0.00
........................................TGGCAGTGCGGTTAGCTGGT.................................................................................................................	20	1	164.00	85.00	0.00	79.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	160.00	50.00	0.00	110.00	0.00
........................................TGGCAGTGTGGTTAGCTCGTT................................................................................................................	21	1	157.00	66.00	0.00	91.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTC.............................................................................................................	24	1	155.00	69.00	0.00	86.00	0.00
........................................TGGCCGTGTGGTTAGCTGGTT................................................................................................................	21	1	155.00	80.00	0.00	75.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTTG...............................................................................................................	22	1	153.00	45.00	0.00	108.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTTG...............................................................................................................	22	1	152.00	37.00	0.00	115.00	0.00
........................................TGGCAGTGTGGTTAGTTGGTT................................................................................................................	21	1	152.00	70.00	0.00	82.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTGTG.............................................................................................................	24	1	150.00	77.00	0.00	73.00	0.00
........................................TGCCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	146.00	24.00	0.00	122.00	0.00
........................................TGGTAGTGTGGTTAGCTGGTT................................................................................................................	21	1	146.00	64.00	0.00	82.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	146.00	29.00	0.00	117.00	0.00
........................................TCGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	143.00	95.00	0.00	48.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGCG.............................................................................................................	24	1	141.00	75.00	0.00	66.00	0.00
........................................TGGCAGTGTGATTAGCTGGTT................................................................................................................	21	1	141.00	54.00	0.00	87.00	0.00
........................................TGGCAGTGTGGTTAGCTT...................................................................................................................	18	1	140.00	5.00	0.00	134.00	1.00
........................................TGGCAGGGGGGTTAGCTGGTT................................................................................................................	21	1	139.00	0.00	0.00	139.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	136.00	39.00	0.00	97.00	0.00
........................................TGGCAGTGTGGTTATCTGGT.................................................................................................................	20	1	136.00	55.00	0.00	81.00	0.00

droPer1

A--AATCCA-GAAAATT------CAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACC----AT-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATAA-GCAACATATAATC------------G	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	447385.00	88603.00	22.00	116552.00	242197.00	11.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	189384.00	38406.00	53.00	57350.00	93572.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	149288.00	51654.00	137.00	44280.00	53216.00	1.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	145598.00	36981.00	7.00	31126.00	77483.00	1.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	52003.00	14296.00	4.00	10416.00	27287.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	29892.00	7870.00	7.00	9432.00	12583.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	17722.00	4306.00	6.00	4174.00	9234.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	8067.00	4156.00	3.00	1059.00	2849.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	6790.00	45.00	8.00	2434.00	4303.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	5591.00	251.00	6.00	2057.00	3277.00	0.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	4753.00	1341.00	0.00	744.00	2667.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	3018.00	1466.00	0.00	437.00	1115.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	2823.00	487.00	0.00	637.00	1699.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTT................................................................................................................	21	1	2619.00	36.00	0.00	165.00	2418.00	0.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	2482.00	241.00	0.00	265.00	1935.00	41.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	2327.00	61.00	0.00	755.00	1511.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	2301.00	463.00	1.00	562.00	1275.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	2002.00	491.00	0.00	485.00	1026.00	0.00
........................................TGGCAGTGTGGTTAGATGGTT................................................................................................................	21	1	1943.00	30.00	0.00	450.00	1463.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	1882.00	111.00	0.00	377.00	1394.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTT................................................................................................................	21	1	1785.00	6.00	0.00	179.00	1600.00	0.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	1527.00	36.00	0.00	83.00	1408.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	1527.00	108.00	0.00	172.00	1247.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	1442.00	33.00	1.00	306.00	1102.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	1389.00	198.00	1.00	404.00	786.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTT.............................................................................................................	24	1	1364.00	22.00	0.00	418.00	924.00	0.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	1334.00	324.00	0.00	289.00	721.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	1326.00	31.00	0.00	433.00	862.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	1322.00	73.00	0.00	245.00	1004.00	0.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	1312.00	111.00	0.00	267.00	934.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	1131.00	67.00	0.00	225.00	839.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	1106.00	56.00	0.00	205.00	845.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	1086.00	16.00	20.00	356.00	652.00	42.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	1082.00	104.00	0.00	335.00	643.00	0.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	1025.00	61.00	0.00	252.00	712.00	0.00
.........................ATTGGCTCTGxGCTTTGGC.................................................................................................................................	18	2	509.00	0.00	0.00	0.00	0.00	509.00
........................................AGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1000.00	75.00	0.00	114.00	811.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTTG...............................................................................................................	22	1	980.00	27.00	0.00	79.00	874.00	0.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	977.00	48.00	0.00	191.00	738.00	0.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	974.00	238.00	0.00	180.00	556.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	902.00	105.00	0.00	153.00	644.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	900.00	120.00	0.00	132.00	648.00	0.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	872.00	17.00	0.00	269.00	586.00	0.00
........................................TGGCAGGGTGGTTAGCTGGT.................................................................................................................	20	1	818.00	22.00	0.00	50.00	746.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	813.00	95.00	0.00	173.00	545.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	795.00	39.00	0.00	183.00	573.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	784.00	115.00	0.00	144.00	525.00	0.00
........................................TGGCAGGGGGGTTAGCTGGTT................................................................................................................	21	1	783.00	0.00	0.00	67.00	716.00	0.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	703.00	55.00	0.00	121.00	527.00	0.00
........................................TGGCAGTGTGGTTAGCTGGG.................................................................................................................	20	1	689.00	25.00	0.00	137.00	527.00	0.00
........................................GGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	687.00	34.00	0.00	68.00	585.00	0.00
........................................TGGCAGTGTGGTTAACTGGTT................................................................................................................	21	1	680.00	28.00	0.00	171.00	481.00	0.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	670.00	16.00	0.00	159.00	495.00	0.00
........................................TGGCAGTGTGGTTAGATGGT.................................................................................................................	20	1	647.00	23.00	0.00	127.00	497.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGTG...............................................................................................................	22	1	630.00	12.00	1.00	176.00	441.00	0.00
........................................TGGCAGTGTGGTTCGCTGGTT................................................................................................................	21	1	613.00	5.00	0.00	101.00	507.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	584.00	35.00	1.00	197.00	351.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTTG...............................................................................................................	22	1	554.00	1.00	0.00	97.00	456.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	542.00	43.00	0.00	168.00	331.00	0.00
........................................TGGCAGAGTGGTTAGCTGGTT................................................................................................................	21	1	526.00	20.00	0.00	76.00	430.00	0.00
........................................TGGCAGTGTGGGTAGCTGGT.................................................................................................................	20	1	521.00	2.00	0.00	47.00	472.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	516.00	42.00	0.00	90.00	384.00	0.00
........................................TGGCAGCGTGGTTAGCTGGT.................................................................................................................	20	1	499.00	45.00	0.00	51.00	403.00	0.00
........................................TGGCAGTGGGGTTAGCTGGTTG...............................................................................................................	22	1	495.00	13.00	0.00	35.00	447.00	0.00
........................................TGGCAGTGTGGTTGGCTGGTT................................................................................................................	21	1	480.00	45.00	0.00	120.00	315.00	0.00
........................................TGGCACTGTGGTTAGCTGGTT................................................................................................................	21	1	475.00	11.00	0.00	381.00	83.00	0.00
.........................................GGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	474.00	119.00	0.00	113.00	242.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	472.00	44.00	0.00	146.00	282.00	0.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	469.00	47.00	0.00	122.00	300.00	0.00
........................................TGGCAGTGTGGTTAGTTGGTT................................................................................................................	21	1	458.00	54.00	0.00	82.00	322.00	0.00
........................................TGGCAGTGGGGTTAGCTGGT.................................................................................................................	20	1	457.00	15.00	0.00	25.00	417.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	453.00	17.00	0.00	51.00	385.00	0.00
........................................TGGCAGTGTGGGTAGATGGTT................................................................................................................	21	1	446.00	0.00	0.00	41.00	405.00	0.00
........................................TGGCAGTGTGGTTATCTGGTTG...............................................................................................................	22	1	444.00	57.00	0.00	107.00	280.00	0.00
........................................TGGCAGTGTGGTTAGCTTG..................................................................................................................	19	1	443.00	20.00	0.00	98.00	325.00	0.00
........................................TGGCAGTGTGGTTAGATGGTTGTG.............................................................................................................	24	1	418.00	25.00	1.00	119.00	273.00	0.00
........................................TGGCAGTGTGGTTAGGTGGTT................................................................................................................	21	1	406.00	7.00	0.00	64.00	335.00	0.00
........................................TGGCAGTGTGGTTAGCGGGTT................................................................................................................	21	1	406.00	14.00	0.00	43.00	349.00	0.00
.......................................CTGGCAGTGTGGTTAGCTGGTT................................................................................................................	22	1	404.00	34.00	0.00	107.00	263.00	0.00
........................................TGGCAGTGTGGTTAGCTGATT................................................................................................................	21	1	403.00	13.00	0.00	194.00	196.00	0.00
........................................TGGCAGTGTGGTTAGCTCGTT................................................................................................................	21	1	398.00	14.00	0.00	62.00	322.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTTG...............................................................................................................	22	1	388.00	25.00	0.00	106.00	257.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTTG...............................................................................................................	22	1	385.00	28.00	0.00	103.00	254.00	0.00
........................................TGGCAGTGAGGTTAGCTGGTT................................................................................................................	21	1	379.00	26.00	0.00	56.00	297.00	0.00
........................................TGGCAGTGTGGTTAGCTGCTT................................................................................................................	21	1	378.00	17.00	0.00	80.00	281.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTGTG.............................................................................................................	24	1	377.00	55.00	0.00	112.00	210.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	365.00	50.00	0.00	126.00	189.00	0.00
........................................TGGCAGTGTGGTTATCTGGT.................................................................................................................	20	1	364.00	48.00	0.00	67.00	249.00	0.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	349.00	84.00	0.00	72.00	193.00	0.00
........................................TGTCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	349.00	141.00	0.00	42.00	166.00	0.00
........................................TGACAGTGTGGTTAGCTGGTT................................................................................................................	21	1	348.00	73.00	0.00	78.00	197.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTC.............................................................................................................	24	1	344.00	23.00	0.00	139.00	182.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	339.00	43.00	0.00	76.00	220.00	0.00
........................................TGGCAGTGTGGTTACCTGGT.................................................................................................................	20	1	339.00	22.00	0.00	71.00	246.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	336.00	50.00	0.00	70.00	216.00	0.00
........................................TGGCAGTGTGGTTACCTGGTTG...............................................................................................................	22	1	332.00	26.00	0.00	88.00	218.00	0.00
........................................TGGAAGTGTGGTTAGCTGGTT................................................................................................................	21	1	332.00	40.00	0.00	45.00	247.00	0.00
........................................TGGTAGTGTGGTTAGCTGGTT................................................................................................................	21	1	331.00	72.00	0.00	75.00	184.00	0.00
........................................TGGCAGTGTGGTCAGCTGGTT................................................................................................................	21	1	329.00	31.00	0.00	100.00	198.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	328.00	77.00	0.00	146.00	105.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	328.00	60.00	0.00	71.00	197.00	0.00

droWil1

T--AAC------A--TT------CTATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TTAAATTGC-CAA-AACA-ATAAA-CCACAGCCACTATCTTCACTGCCGCCGCGACAGGCCATGACAACAAT-----------CG--G-------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	399831.00	83170.00	9762.00	306095.00	804.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	129141.00	46048.00	1540.00	78349.00	3204.00
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	118160.00	54128.00	1787.00	59011.00	3234.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	72555.00	32330.00	477.00	39375.00	373.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	33925.00	13695.00	198.00	19887.00	145.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	22088.00	169.00	613.00	7852.00	13454.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	18827.00	158.00	16.00	9268.00	9385.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	14101.00	8180.00	325.00	4743.00	853.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	9228.00	4771.00	117.00	4311.00	29.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	4567.00	1039.00	12.00	3428.00	88.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	4180.00	2981.00	69.00	1124.00	6.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	3847.00	2413.00	94.00	1269.00	71.00
....................................................................................................CAGCCACTATCTTCACTGCCGC...................................................	22	1	1785.00	72.00	84.00	1012.00	617.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	1574.00	1009.00	19.00	542.00	4.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	1506.00	859.00	16.00	623.00	8.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	1332.00	299.00	8.00	1015.00	10.00
........................................CGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	1237.00	117.00	9.00	1111.00	0.00
........................................TGGCAGTGTGGTTAGATGGTTGTG.............................................................................................................	24	1	1073.00	15.00	8.00	1050.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	1067.00	302.00	0.00	648.00	117.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	1051.00	823.00	14.00	212.00	2.00
........................................TGGAAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	981.00	43.00	25.00	913.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTATG.............................................................................................................	24	1	951.00	32.00	3.00	916.00	0.00
........................................TGGCAGTGTGTTTAGCTGGTTGTG.............................................................................................................	24	1	782.00	100.00	21.00	655.00	6.00
........................................TGGCAGTGTGGTTAACTGGTTGTG.............................................................................................................	24	1	759.00	35.00	10.00	714.00	0.00
.........................................TGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	23	1	719.00	84.00	16.00	612.00	7.00
.........................................GGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	23	1	696.00	60.00	10.00	625.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	677.00	44.00	11.00	622.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	663.00	267.00	21.00	361.00	14.00
........................................TGGCAGTGTGGTTAGCTGGCTGTG.............................................................................................................	24	1	655.00	196.00	19.00	440.00	0.00
........................................TGGCCGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	644.00	49.00	24.00	571.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTTGTG.............................................................................................................	24	1	643.00	141.00	25.00	477.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGC............................................................................................................	25	1	639.00	96.00	12.00	522.00	9.00
........................................TGGCAGTATGGTTAGCTGGTTGTG.............................................................................................................	24	1	609.00	29.00	3.00	577.00	0.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	606.00	290.00	12.00	296.00	8.00
........................................TGGCAGTGTGGTTAGCTGGTTGCG.............................................................................................................	24	1	584.00	98.00	18.00	467.00	1.00
........................................TGGCAGTGTGGTTAGCTAGTTGTG.............................................................................................................	24	1	583.00	57.00	5.00	521.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	578.00	92.00	12.00	474.00	0.00
........................................AGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	574.00	32.00	4.00	538.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCGCCA.................................................	24	1	574.00	34.00	3.00	352.00	185.00
........................................TGGCAGTGTGGTTAGCTGATTGTG.............................................................................................................	24	1	573.00	33.00	1.00	539.00	0.00
........................................TGGCGGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	571.00	78.00	11.00	482.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTTGTG.............................................................................................................	24	1	569.00	118.00	14.00	435.00	2.00
........................................TAGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	543.00	75.00	7.00	460.00	1.00
........................................TGGCAGTGTGGTTATCTGGTTGTG.............................................................................................................	24	1	533.00	48.00	25.00	458.00	2.00
........................................TGGCAGTGTxGTTAGCTGGTTGTG.............................................................................................................	23	1	510.00	55.00	18.00	437.00	0.00
........................................TGGCAGTGTGGTTAGCTxGTTGTG.............................................................................................................	23	1	509.00	88.00	10.00	411.00	0.00
........................................GGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	490.00	30.00	9.00	451.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTCGTG.............................................................................................................	24	1	471.00	96.00	7.00	368.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTTGTG.............................................................................................................	24	1	463.00	84.00	7.00	372.00	0.00
........................................TTGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	457.00	83.00	27.00	338.00	9.00
........................................TGGCAGTGTAGTTAGCTGGTTGTG.............................................................................................................	24	1	439.00	32.00	2.00	405.00	0.00
........................................TGGCAGTGTGGTTACCTGGTTGTG.............................................................................................................	24	1	435.00	66.00	8.00	359.00	2.00
........................................TGACAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	434.00	45.00	2.00	386.00	1.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	429.00	132.00	4.00	239.00	54.00
........................................TGGCAGCGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	427.00	98.00	18.00	311.00	0.00
........................................TGGCAATGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	427.00	24.00	5.00	398.00	0.00
........................................TGTCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	419.00	57.00	25.00	332.00	5.00
........................................TCGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	404.00	94.00	4.00	300.00	6.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	398.00	85.00	4.00	309.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTC.............................................................................................................	24	1	397.00	86.00	9.00	293.00	9.00
........................................TGGCAGTGTGGTCAGCTGGTTGTG.............................................................................................................	24	1	392.00	59.00	7.00	326.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGG............................................................................................................	25	1	389.00	30.00	1.00	354.00	4.00
....................................................................................................CAGCCACTATCTTCACTGCCGAC..................................................	23	1	388.00	0.00	3.00	41.00	344.00
........................................TGGCAGTGTGGATAGCTGGTTGTG.............................................................................................................	24	1	384.00	15.00	2.00	367.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	381.00	74.00	1.00	306.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	378.00	128.00	3.00	244.00	3.00
........................................TGGCAGTGTGGTTAGTTGGTTGTG.............................................................................................................	24	1	368.00	29.00	5.00	334.00	0.00
........................................TGGCAGTGTGATTAGCTGGTTGTG.............................................................................................................	24	1	352.00	23.00	3.00	326.00	0.00
........................................TGGCAGTGTTGTTAGCTGGTTGTG.............................................................................................................	24	1	349.00	48.00	13.00	287.00	1.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	347.00	47.00	11.00	285.00	4.00
........................................TGGCAGTGTGGTTGGCTGGTTGTG.............................................................................................................	24	1	319.00	62.00	7.00	250.00	0.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	318.00	146.00	2.00	169.00	1.00
........................................TGGCAGTGTGGTTAGCTCGTTGTG.............................................................................................................	24	1	317.00	60.00	7.00	250.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	313.00	85.00	1.00	227.00	0.00
........................................TGCCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	308.00	53.00	6.00	247.00	2.00
........................................TGGTAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	308.00	46.00	6.00	254.00	2.00
........................................TGGCAxxGTGGTTAGCTGGTTGTG.............................................................................................................	22	1	294.00	38.00	5.00	251.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	294.00	128.00	1.00	117.00	48.00
........................................TGGAAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	286.00	18.00	7.00	261.00	0.00
..........................................GCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	22	1	285.00	13.00	5.00	258.00	9.00
........................................TGGCAGTGTGGTTCGCTGGTTGTG.............................................................................................................	24	1	284.00	36.00	5.00	242.00	1.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	281.00	142.00	0.00	103.00	36.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	272.00	8.00	2.00	261.00	1.00
........................................TGGCAGTGTCGTTAGCTGGTTGTG.............................................................................................................	24	1	262.00	37.00	6.00	218.00	1.00
........................................TGGCAGTGAGGTTAGCTGGTTGTG.............................................................................................................	24	1	258.00	23.00	3.00	232.00	0.00
........................................TGGCAGTCTGGTTAGCTGGTTGTG.............................................................................................................	24	1	251.00	43.00	4.00	204.00	0.00
........................................TGGCATTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	249.00	31.00	4.00	203.00	11.00
........................................TGGCAGTTTGGTTAGCTGGTTGTG.............................................................................................................	24	1	246.00	18.00	10.00	214.00	4.00
........................................TGGCAGTGTGGTTAACTGGTTG...............................................................................................................	22	1	245.00	22.00	4.00	219.00	0.00
........................................TGGCAGTGTGGTTAGCTGCTTGTG.............................................................................................................	24	1	244.00	47.00	2.00	195.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGGG.............................................................................................................	24	1	244.00	21.00	1.00	216.00	6.00
........................................TGGCACTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	237.00	30.00	3.00	200.00	4.00
........................................TGGCAGTGTGGTTAGCTGGTG................................................................................................................	21	1	235.00	27.00	1.00	198.00	9.00
........................................TTGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	233.00	52.00	1.00	89.00	91.00
........................................TGGCAGTGTGCTTAGCTGGTTGTG.............................................................................................................	24	1	232.00	29.00	4.00	199.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	231.00	108.00	1.00	115.00	7.00
........................................TGGCAGTGTGGTTAGCTGGTTCC..............................................................................................................	23	1	226.00	12.00	0.00	203.00	11.00
.........................................TGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	225.00	63.00	3.00	103.00	56.00
.........................................TGCAGTGTGGTTAGCTGGTTG...............................................................................................................	21	1	218.00	40.00	3.00	145.00	30.00
........................................TGGCAGTGTGGTTAGCTGGATGTG.............................................................................................................	24	1	217.00	23.00	1.00	193.00	0.00
.........................................GGCAGTGTGGTTAGCTGGTTG...............................................................................................................	21	1	213.00	38.00	0.00	173.00	2.00

droVir3

A--AAAAAA-ATTACCTTAAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-T------------TGACA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACAGCAAA---------------A-------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	588774.00	296014.00	288816.00	223.00	1741.00	1980.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	280897.00	171260.00	107101.00	530.00	1136.00	870.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	180946.00	93494.00	86959.00	73.00	226.00	194.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	166185.00	129911.00	35742.00	200.00	220.00	112.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	70551.00	50003.00	19806.00	114.00	345.00	283.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	49507.00	28551.00	20693.00	90.00	96.00	77.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	30896.00	15607.00	15048.00	113.00	62.00	66.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	12667.00	8709.00	3920.00	15.00	14.00	9.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	11237.00	321.00	1731.00	1.00	3682.00	5502.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	9749.00	8745.00	985.00	2.00	14.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	8794.00	6119.00	2293.00	6.00	241.00	135.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	8051.00	4355.00	3628.00	21.00	21.00	26.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	6319.00	5152.00	1151.00	4.00	6.00	6.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	5404.00	4206.00	1179.00	4.00	14.00	1.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	4236.00	2919.00	1295.00	1.00	10.00	11.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	4044.00	396.00	233.00	8.00	1404.00	2003.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	3569.00	2052.00	1486.00	7.00	19.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	3475.00	975.00	2472.00	27.00	1.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	3196.00	506.00	2683.00	0.00	5.00	2.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	3114.00	1389.00	1614.00	2.00	45.00	64.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	2512.00	710.00	1753.00	34.00	12.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	2244.00	989.00	1226.00	22.00	3.00	4.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	2155.00	105.00	2030.00	20.00	0.00	0.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	1822.00	204.00	1606.00	6.00	2.00	4.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	1744.00	363.00	1338.00	1.00	22.00	20.00
........................................TGGCAGGGTGGTTAGCTGGTT................................................................................................................	21	1	1718.00	150.00	1561.00	3.00	2.00	2.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	1524.00	377.00	1142.00	1.00	2.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTTAA..............................................................................................................	23	1	1447.00	1121.00	312.00	11.00	2.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	1393.00	1139.00	239.00	0.00	11.00	4.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	1363.00	314.00	1036.00	2.00	4.00	7.00
........................................TGGCAGTGTGGTTAGATGGTT................................................................................................................	21	1	1358.00	271.00	1086.00	1.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	1292.00	290.00	997.00	2.00	2.00	1.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1282.00	403.00	878.00	0.00	1.00	0.00
........................................TGGCAGAGTGGTTAGCTGGTT................................................................................................................	21	1	1273.00	154.00	1117.00	0.00	0.00	2.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	1203.00	90.00	1055.00	57.00	0.00	1.00
........................................TGGCAGTGTGGGTAGCTGGTT................................................................................................................	21	1	1191.00	147.00	1041.00	2.00	0.00	1.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	1127.00	468.00	656.00	0.00	1.00	2.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	1095.00	390.00	568.00	1.00	49.00	87.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	1070.00	396.00	673.00	0.00	1.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	1051.00	193.00	794.00	5.00	31.00	28.00
........................................TGGCAGTGTGGTTAGCTGGTAA...............................................................................................................	22	1	1026.00	712.00	309.00	5.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	998.00	781.00	209.00	0.00	3.00	5.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	955.00	335.00	612.00	0.00	3.00	5.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	946.00	300.00	639.00	5.00	1.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTGTC.............................................................................................................	24	1	852.00	585.00	159.00	0.00	71.00	37.00
........................................TGGCAGTGTGGTTCGCTGGTT................................................................................................................	21	1	782.00	107.00	675.00	0.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTAGTT................................................................................................................	21	1	756.00	592.00	163.00	0.00	1.00	0.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	755.00	37.00	705.00	11.00	0.00	2.00
........................................TGGCAGTGTGGTTAACTGGTT................................................................................................................	21	1	737.00	325.00	411.00	0.00	1.00	0.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	646.00	287.00	355.00	1.00	3.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTTG...............................................................................................................	22	1	645.00	121.00	517.00	4.00	1.00	2.00
........................................GGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	617.00	319.00	297.00	1.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTTT.............................................................................................................	24	1	614.00	88.00	501.00	25.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGGG.................................................................................................................	20	1	596.00	138.00	383.00	2.00	40.00	33.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	567.00	223.00	341.00	1.00	1.00	1.00
........................................TGGCAGTGTGGTTAGCTGGAT................................................................................................................	21	1	567.00	399.00	155.00	1.00	6.00	6.00
........................................TGGCAGTGTGGTTAGCTGGTAT...............................................................................................................	22	1	566.00	370.00	195.00	0.00	1.00	0.00
........................................TGGCAGGGTGGTTAGCTGGT.................................................................................................................	20	1	559.00	75.00	482.00	0.00	1.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTTA..............................................................................................................	23	1	552.00	371.00	178.00	1.00	2.00	0.00
........................................TGGCAGTGTGGTTAGCAGGTT................................................................................................................	21	1	539.00	436.00	103.00	0.00	0.00	0.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	537.00	65.00	469.00	0.00	0.00	3.00
........................................TGGCAGTGTGGTTATCTGGTTG...............................................................................................................	22	1	530.00	122.00	396.00	7.00	3.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTG................................................................................................................	21	1	528.00	149.00	348.00	1.00	17.00	13.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	526.00	221.00	305.00	0.00	0.00	0.00
.........................................GGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	515.00	231.00	279.00	0.00	3.00	2.00
........................................CGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	506.00	241.00	264.00	0.00	1.00	0.00
.......................................CTGGCAGTGTGGTTAGCTGGTT................................................................................................................	22	1	501.00	261.00	240.00	0.00	0.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	492.00	188.00	297.00	2.00	4.00	1.00
........................................TGGCAGCGTGGTTAGCTGGT.................................................................................................................	20	1	486.00	119.00	367.00	0.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTTG...............................................................................................................	22	1	484.00	248.00	232.00	4.00	0.00	0.00
........................................AGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	478.00	149.00	329.00	0.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTGTG.............................................................................................................	24	1	477.00	233.00	241.00	1.00	1.00	1.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	473.00	172.00	300.00	1.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGTG...............................................................................................................	22	1	467.00	100.00	332.00	14.00	11.00	10.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	466.00	195.00	265.00	0.00	4.00	2.00
........................................TGGCAGTGTGGTTAGCTGATT................................................................................................................	21	1	464.00	157.00	304.00	0.00	0.00	3.00
........................................TGGCAGTGTGGTTATCTGGT.................................................................................................................	20	1	455.00	53.00	400.00	2.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTCGTT................................................................................................................	21	1	454.00	240.00	214.00	0.00	0.00	0.00
........................................TGGCAGTGCGGTTAGCTGGT.................................................................................................................	20	1	454.00	120.00	331.00	1.00	2.00	0.00
........................................TGGCAGTGTGGTTAGCTAGTTG...............................................................................................................	22	1	453.00	392.00	60.00	1.00	0.00	0.00
.........................................TGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	453.00	376.00	53.00	0.00	17.00	7.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	451.00	158.00	250.00	1.00	18.00	24.00
........................................TGGCAGTGTGTTTAGCTGGTT................................................................................................................	21	1	450.00	268.00	174.00	0.00	5.00	3.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	444.00	118.00	323.00	3.00	0.00	0.00
........................................TGGCAGTGTGGTCAGCTGGTT................................................................................................................	21	1	443.00	228.00	214.00	1.00	0.00	0.00
........................................TGGCAGTGTGGTTAGATGGT.................................................................................................................	20	1	440.00	95.00	345.00	0.00	0.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTTG...............................................................................................................	22	1	439.00	239.00	198.00	1.00	1.00	0.00
........................................TGGCAGTGTGGTTAGGTGGTT................................................................................................................	21	1	437.00	39.00	397.00	0.00	1.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTAT..............................................................................................................	23	1	434.00	308.00	123.00	2.00	1.00	0.00
........................................TGGCAGAGTGGTTAGCTGGTTG...............................................................................................................	22	1	430.00	88.00	342.00	0.00	0.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTTG...............................................................................................................	22	1	429.00	93.00	332.00	4.00	0.00	0.00
........................................TGGCAGTGTGGTTGGCTGGTT................................................................................................................	21	1	425.00	161.00	264.00	0.00	0.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCGC...................................................	22	1	415.00	125.00	56.00	1.00	104.00	129.00
........................................TGGCAGGGGGGTTAGCTGGTT................................................................................................................	21	1	406.00	0.00	406.00	0.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTCT...............................................................................................................	22	1	405.00	231.00	127.00	3.00	33.00	11.00
........................................TGGCAGTGTGGTTAGTTGGTT................................................................................................................	21	1	387.00	130.00	255.00	1.00	1.00	0.00
........................................CGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	377.00	120.00	257.00	0.00	0.00	0.00
........................................TGGCAGTGTGGTTACCTGGTTG...............................................................................................................	22	1	373.00	179.00	189.00	4.00	1.00	0.00
........................................TTGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	364.00	233.00	88.00	2.00	23.00	18.00
........................................TGGCAGAGTGGTTAGCTGGT.................................................................................................................	20	1	357.00	41.00	316.00	0.00	0.00	0.00
........................................TGGCAGTGTGGTTAGCTGCTT................................................................................................................	21	1	356.00	96.00	259.00	0.00	0.00	1.00

droMoj3

C--GAAAAA-ATACCCTTTAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAC-T------------TGAAA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCGAG-----------AG--A-------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	873869.00	315298.00	312208.00	246291.00	72.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	498217.00	226950.00	155775.00	115363.00	129.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	393882.00	176984.00	114316.00	102557.00	25.00
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	180803.00	72438.00	64821.00	43205.00	339.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	90257.00	45346.00	25529.00	19364.00	18.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	89774.00	43277.00	23857.00	22621.00	19.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	70444.00	14014.00	20573.00	35848.00	9.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	26210.00	223.00	1897.00	24090.00	0.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	13093.00	122.00	996.00	11974.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	12909.00	6657.00	3402.00	2844.00	6.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	12865.00	67.00	4856.00	7933.00	9.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	12193.00	129.00	1340.00	10722.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	11925.00	299.00	3263.00	8353.00	10.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	11641.00	6311.00	2870.00	2458.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	11085.00	4893.00	3365.00	2816.00	11.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	10021.00	3651.00	4038.00	2329.00	3.00
........................................TGGCAGTGTGGTTAGCTTGTTT...............................................................................................................	22	1	8457.00	14.00	324.00	8119.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	7141.00	4558.00	1652.00	930.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	6875.00	2885.00	2135.00	1854.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTTTT.............................................................................................................	24	1	5716.00	39.00	862.00	4813.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	5537.00	393.00	1464.00	3680.00	0.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	4499.00	1507.00	1510.00	1482.00	0.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	4128.00	2469.00	935.00	722.00	2.00
........................................TGGCAGTGTGGTTAGCTG...................................................................................................................	18	1	3913.00	743.00	1674.00	1496.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGT................................................................................................................	21	1	3885.00	81.00	778.00	3025.00	1.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	3361.00	1889.00	889.00	582.00	1.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	3299.00	38.00	405.00	2855.00	1.00
........................................TGGCAGTGTGGTTAGCTTG..................................................................................................................	19	1	3296.00	239.00	265.00	2792.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	2695.00	360.00	807.00	1528.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCT................................................................................................................	21	1	2636.00	359.00	1099.00	1178.00	0.00
........................................TGGCAGTGTGGTTATCTGGTT................................................................................................................	21	1	2597.00	276.00	850.00	1471.00	0.00
........................................TGGCAGTGTGGTTAGATGGTT................................................................................................................	21	1	2312.00	66.00	1449.00	797.00	0.00
........................................TGGCAGTGTGGTTAGCTGGGTG...............................................................................................................	22	1	2129.00	54.00	432.00	1642.00	1.00
........................................TGGCAGTGTGGTTAGCTTGTTGTT.............................................................................................................	24	1	2117.00	0.00	103.00	2014.00	0.00
........................................TGGCAGTGTGGTTAGCTGTT.................................................................................................................	20	1	2098.00	491.00	633.00	974.00	0.00
........................................TGGCAGTGTGGTTCGCTGGTT................................................................................................................	21	1	1968.00	26.00	512.00	1430.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTT................................................................................................................	21	1	1922.00	128.00	829.00	964.00	1.00
........................................TGGCAGGGTGGTTAGCTGGTT................................................................................................................	21	1	1855.00	62.00	1284.00	509.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTTTG.............................................................................................................	24	1	1786.00	0.00	117.00	1669.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTT................................................................................................................	21	1	1773.00	40.00	836.00	897.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	1730.00	250.00	985.00	495.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTGT..............................................................................................................	23	1	1639.00	17.00	125.00	1497.00	0.00
........................................TGGCAGTGTGGTTAGCTGGCTG...............................................................................................................	22	1	1513.00	370.00	565.00	578.00	0.00
........................................TGGCAGTGTGGTTAGCTGGC.................................................................................................................	20	1	1437.00	301.00	648.00	487.00	1.00
........................................CGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1393.00	309.00	631.00	453.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	1385.00	156.00	539.00	690.00	0.00
........................................TGGCAGTGTGGTTAGCTGGG.................................................................................................................	20	1	1358.00	124.00	450.00	784.00	0.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	1325.00	215.00	759.00	351.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	1294.00	158.00	620.00	516.00	0.00
........................................TGGCAGTGTGGTTAACTGGTT................................................................................................................	21	1	1213.00	116.00	429.00	668.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	1124.00	250.00	535.00	339.00	0.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	1080.00	228.00	421.00	391.00	40.00
........................................TGGCAGTGTGGTTATCTGGT.................................................................................................................	20	1	1040.00	169.00	271.00	600.00	0.00
........................................TGGCAGTGTGGTTATCTGGTTG...............................................................................................................	22	1	1031.00	187.00	334.00	510.00	0.00
........................................TAGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1029.00	218.00	273.00	538.00	0.00
........................................TGGCAGTGTGGTTAGATGGTTG...............................................................................................................	22	1	997.00	53.00	642.00	301.00	1.00
........................................TGGCAGTGTGGTTCGCTGGT.................................................................................................................	20	1	985.00	19.00	223.00	743.00	0.00
........................................TGGCGGTGTGGTTAGCTGGTT................................................................................................................	21	1	972.00	160.00	519.00	293.00	0.00
........................................TGGCAGTGTGGTTAGCCGGTTG...............................................................................................................	22	1	958.00	118.00	381.00	459.00	0.00
........................................TGGCAGTGTGGTTAGATGGT.................................................................................................................	20	1	941.00	42.00	557.00	342.00	0.00
........................................TGGCAGTGTGGTTAGCTTGTTTT..............................................................................................................	23	1	929.00	0.00	42.00	887.00	0.00
........................................TGGCAGTGTGGTTCGCTGGTTG...............................................................................................................	22	1	899.00	14.00	180.00	705.00	0.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	879.00	564.00	168.00	147.00	0.00
........................................TGGCAGGGTGGTTAGCTGGTTG...............................................................................................................	22	1	863.00	53.00	595.00	215.00	0.00
........................................TGGCCGTGTGGTTAGCTGGTT................................................................................................................	21	1	862.00	44.00	251.00	567.00	0.00
........................................TGGCAGTGTTGTTAGCTGGTT................................................................................................................	21	1	849.00	176.00	123.00	550.00	0.00
........................................TGGCAGTGTAGTTAGCTGGTT................................................................................................................	21	1	844.00	123.00	160.00	561.00	0.00
........................................TGGCAGTGTGGTTGGCTGGTT................................................................................................................	21	1	822.00	86.00	282.00	454.00	0.00
........................................TGGCAGTGTGGGTAGCTGGTTG...............................................................................................................	22	1	806.00	27.00	335.00	444.00	0.00
........................................TGGCAGTGTGGTTATCTTGTT................................................................................................................	21	1	790.00	0.00	97.00	693.00	0.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	783.00	167.00	390.00	226.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTG................................................................................................................	21	1	778.00	67.00	319.00	392.00	0.00
........................................TGGCAGTGTGGTTAGCTAGTT................................................................................................................	21	1	777.00	119.00	149.00	508.00	1.00
.........................................GGCAGTGTGGTTAGCTGGTT................................................................................................................	20	1	766.00	313.00	255.00	198.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGC..............................................................................................................	23	1	763.00	190.00	323.00	250.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTC.............................................................................................................	24	1	758.00	328.00	268.00	162.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTCTG.............................................................................................................	24	1	745.00	238.00	317.00	190.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTAA..............................................................................................................	23	1	741.00	419.00	190.00	130.00	2.00
........................................TGGCAGTGTGGTTAGCTGGTAA...............................................................................................................	22	1	727.00	288.00	243.00	195.00	1.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	727.00	54.00	463.00	210.00	0.00
........................................TGGCAGGGTGGTTAGCTGGT.................................................................................................................	20	1	719.00	39.00	444.00	236.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTA.............................................................................................................	24	1	719.00	357.00	185.00	177.00	0.00
........................................TGGCAGTGTGGGTAGCTGGT.................................................................................................................	20	1	711.00	18.00	294.00	399.00	0.00
........................................TGGCAGTGTGGTTAGCTGTTTT...............................................................................................................	22	1	707.00	9.00	134.00	564.00	0.00
........................................CGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	695.00	203.00	310.00	182.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTCT...............................................................................................................	22	1	672.00	386.00	171.00	115.00	0.00
.......................................CTGGCAGTGTGGTTAGCTGGTT................................................................................................................	22	1	665.00	220.00	282.00	163.00	0.00
........................................TGGCAGCGTGGTTAGCTGGT.................................................................................................................	20	1	665.00	116.00	352.00	196.00	1.00
........................................AGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	659.00	84.00	386.00	189.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTGTTT............................................................................................................	25	1	644.00	27.00	268.00	349.00	0.00
........................................TGGCAGTGTGGTTAGCTGGTTTG..............................................................................................................	23	1	615.00	31.00	337.00	247.00	0.00
........................................TGGCAGTGTGGTTAGCTGATT................................................................................................................	21	1	613.00	93.00	240.00	280.00	0.00
........................................TGGCAGTGTGGTCAGCTGGTT................................................................................................................	21	1	599.00	97.00	276.00	226.00	0.00
........................................TGGCAGTGTGGCTAGCTGGTTG...............................................................................................................	22	1	596.00	119.00	250.00	227.00	0.00
........................................CGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	591.00	174.00	239.00	178.00	0.00
........................................TTGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	584.00	449.00	75.00	60.00	0.00
........................................TGGCAGTGTGGTTAGTTGGTT................................................................................................................	21	1	584.00	135.00	345.00	104.00	0.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	580.00	182.00	230.00	168.00	0.00
........................................TGGCAGTGTGTTTAGCTGGTT................................................................................................................	21	1	579.00	273.00	184.00	122.00	0.00
........................................GGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	577.00	104.00	310.00	163.00	0.00
........................................TGGCAGTGTGGCTAGCTGGT.................................................................................................................	20	1	567.00	98.00	231.00	238.00	0.00

droGri2

A--AACCAA-ATTCCATT-----GAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-C------------TGACA----AA-TCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCAATAAA------TATA--A-------------	Size	Hit Count	Total Norm	V109 Male body
........................................TGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	2384.00	2384.00
........................................TGGCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	1241.00	1241.00
........................................TGGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	1160.00	1160.00
........................................TGGCAGTGTGGTTAGCTGGT.................................................................................................................	20	1	291.00	291.00
........................................TGGCAGTGTGGTTAGCTGGTTGT..............................................................................................................	23	1	262.00	262.00
........................................TGGCAGTGTGGTTAGCTGG..................................................................................................................	19	1	110.00	110.00
........................................TGGCAGTGTGGTTAGCTGGTTT...............................................................................................................	22	1	52.00	52.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGT............................................................................................................	25	1	50.00	50.00
........................................TGGCAGTGTGGTTAGCTCGTTGTG.............................................................................................................	24	1	39.00	39.00
........................................TGGCAGTGTGGTTAGCTGGTTGCG.............................................................................................................	24	1	27.00	27.00
........................................TGGCAGTGTGGTTAGCTGGTTGAG.............................................................................................................	24	1	25.00	25.00
........................................TGGCAGTGTGGTTAGCTGGTTGTGA............................................................................................................	25	1	23.00	23.00
........................................TGGCAGTGTGGTTAGCTGGTTA...............................................................................................................	22	1	21.00	21.00
........................................TGGCAGTGTGGTTAGCTGGTA................................................................................................................	21	1	19.00	19.00
........................................TGGCAGTGTGGTTAGCTGGTTGA..............................................................................................................	23	1	17.00	17.00
........................................TGGCAGTGTGGTTAGCTAGTTGTG.............................................................................................................	24	1	16.00	16.00
........................................TGGCAGTGTGGTTAGCTAGTTG...............................................................................................................	22	1	16.00	16.00
........................................TGGCAGTGTGGTTAGCTAGTT................................................................................................................	21	1	14.00	14.00
........................................TGGCAGCGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	14.00	14.00
........................................TGGCAGTGTGGTTAGCTCGTT................................................................................................................	21	1	13.00	13.00
........................................TGGCAGTGTGGTTAGCTTGTTGTG.............................................................................................................	24	1	12.00	12.00
........................................TGGCAGTGTGGTTAGCTGGTC................................................................................................................	21	1	11.00	11.00
........................................TGGCAGTGTGGTTAGCTCGTTG...............................................................................................................	22	1	11.00	11.00
........................................TGGCAGTGTGGTTAGCTTGTTG...............................................................................................................	22	1	10.00	10.00
........................................TGGCAATGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	10.00	10.00
........................................TGGCAGTGAGGTTAGCTGGTTGTG.............................................................................................................	24	1	9.00	9.00
........................................TGGCAGTGCGGTTAGCTGGTTG...............................................................................................................	22	1	9.00	9.00
........................................TGGCAGTGTGGTTAGCTTGTT................................................................................................................	21	1	8.00	8.00
........................................TGGCAGTGTGGTTAGCTGGTTGGG.............................................................................................................	24	1	8.00	8.00
........................................TGGCAGTGTGGTTAGCTGGA.................................................................................................................	20	1	8.00	8.00
........................................TGGCAGTGCGGTTAGCTGGTTGTG.............................................................................................................	24	1	8.00	8.00
....................................................................................................CAGCCACTATCTTCACTGCCGCC..................................................	23	1	7.00	7.00
........................................TGGCATTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	7.00	7.00
........................................TGTCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	7.00	7.00
........................................TGGCAGTGAGGTTAGCTGGTT................................................................................................................	21	1	6.00	6.00
........................................TGGCAGTGTGGTTAGCTGT..................................................................................................................	19	1	6.00	6.00
........................................TGGCAGAGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	6.00	6.00
........................................TGGCAGTGTGGTTAGCTCGTTGT..............................................................................................................	23	1	6.00	6.00
........................................TGGCAGTGCGGTTAGCTGGTT................................................................................................................	21	1	5.00	5.00
........................................TGGCCGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	5.00	5.00
........................................TGGCAGTGTGGTTAGATGGTTGTG.............................................................................................................	24	1	5.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTGTT.............................................................................................................	24	1	5.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTCGTG.............................................................................................................	24	1	5.00	5.00
........................................TGGCAGTGTGGTTAGCTGGTTC...............................................................................................................	22	1	5.00	5.00
........................................TGGCACTGTGGTTAGCTGGTTG...............................................................................................................	22	1	5.00	5.00
........................................CGGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	5.00	5.00
........................................TGCCAGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTGTTTG...............................................................................................................	22	1	4.00	4.00
........................................TGGCAGTGCGGTTAGCTGGTTGT..............................................................................................................	23	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTGGTTTTG.............................................................................................................	24	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTGA..................................................................................................................	19	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTCGT.................................................................................................................	20	1	4.00	4.00
........................................TCGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTGGTTTT..............................................................................................................	23	1	4.00	4.00
........................................TGGCAATGTGGTTAGCTGGTT................................................................................................................	21	1	4.00	4.00
........................................TGGCAGTGGGGTTAGCTGGTTGTG.............................................................................................................	24	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTAGTTGT..............................................................................................................	23	1	4.00	4.00
........................................TGGCAGTGTGGTTCGCTGGTTG...............................................................................................................	22	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTGGTTTA..............................................................................................................	23	1	4.00	4.00
........................................TGACAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	4.00	4.00
........................................TGCCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	4.00	4.00
........................................TGGCAGTGTGGTTAGCTGTTT................................................................................................................	21	1	3.00	3.00
........................................TGGCAGTGTGGCTAGCTGGTT................................................................................................................	21	1	3.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTTAA..............................................................................................................	23	1	3.00	3.00
........................................TTGCAGTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	3.00	3.00
........................................TGGCAGTGTGGTTAGCTTGT.................................................................................................................	20	1	3.00	3.00
........................................TGGCAGTGTGGTTAGCTxGTTGTG.............................................................................................................	23	1	3.00	3.00
........................................TGGCAGGGTGGTTAGCTGGTTG...............................................................................................................	22	1	3.00	3.00
........................................TGGCAGAGTGGTTAGCTGGTT................................................................................................................	21	1	3.00	3.00
....................................................................................................CAGCCACTATCTTCACTGCCGC...................................................	22	1	3.00	3.00
........................................TCGCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	3.00	3.00
.......................................CTGGCAGTGTGGTTAGCTGGT.................................................................................................................	21	1	3.00	3.00
........................................TGTCAGTGTGGTTAGCTGGTT................................................................................................................	21	1	3.00	3.00
........................................TGGCAGTGGGGTTAGCTGGTT................................................................................................................	21	1	3.00	3.00
........................................TGGCAGTGTGGTTAGCTGTTTGTG.............................................................................................................	24	1	3.00	3.00
........................................TGGCAGTGTCGTTAGCTGGTTGTG.............................................................................................................	24	1	3.00	3.00
........................................TGGCAGTGTGGTTACCTGGTT................................................................................................................	21	1	3.00	3.00
........................................TGGCACTGTGGTTAGCTGGTTGTG.............................................................................................................	24	1	3.00	3.00
........................................TGGCAGTGTGGTTAGCTGGTTATG.............................................................................................................	24	1	3.00	3.00
........................................TGGCAGCGTGGTTAGCTGGTTG...............................................................................................................	22	1	3.00	3.00
........................................TGGCCGTGTGGTTAGCTGGTTG...............................................................................................................	22	1	3.00	3.00
........................................TGGCCGTGTGGTTAGCTGGTT................................................................................................................	21	1	3.00	3.00
........................................TGGCAGCGTGGTTAGCTGGTT................................................................................................................	21	1	3.00	3.00

Generated: 04/20/2012 at 05:17:17 EDT

dme-mir-34

chr3R:5926658-5926756 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup