dme-mir-315- Best orthologs

dme-mir-315	chr3L:18854071-18854154 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_intron

Legend:

   mature strand at position 18854082-18854104
   star strand at position 18854124-18854145
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:18854056-18854169 +		1	GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG-TTT-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTG------
droSim1	chr3L:18159364-18159477 +	LASTZ	1	GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTT-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTG------
droSec1	super_19:820227-820338 +	LASTZ	1	GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---T-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTG------
droYak2	chr3L:21787014-21787126 -	LASTZ	1	GAGTTCC---G----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATTG------
droEre2	scaffold_4784:18670595-18670707 +	LASTZ	1	GAGTTCCT--A----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA-TCT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTG------
droEug1	scf7180000409471:636152-636265 -	LASTZ	4	GAGCTCCA--A----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTT-----AACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGTTT------
droBia1	scf7180000302529:650405-650518 -	LASTZ	4	GAGCTCCT--C----------AGCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTT-----AACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTT------
droTak1	scf7180000415184:198583-198696 -	LASTZ	4	GAGCTCCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-CTT-----AACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGATT------
droEle1	scf7180000490993:1762457-1762571 +	LASTZ	4	GAGTTCCTG-G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGAAT------
droRho1	scf7180000758207:1470-1583 +	LASTZ	4	GAGTTTCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATA-TTT-----A-CAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGTTTT-----
droFic1	scf7180000453824:210602-210715 +	LASTZ	4	GAGCTCCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA-CTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGAAA------
droKik1	scf7180000302248:117514-117633 -	LASTZ	4	GAGTTCCTGGA----------AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TA-TTT-----ATCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTATGAAGT
droAna3	scaffold_13337:18585473-18585582 -	LASTZ	1	GAGCTCCT--A----------AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATT-----ATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAAC----------
droBip1	scf7180000396741:1773734-1773847 -	LASTZ	4	GAGATCCT--A----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAT-ATT-----TAAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACATTT------
dp4	chrXR_group6:4103840-4103943 -	LASTZ	1	G---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTA-----ACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT-------
droPer1	super_9:2393048-2393151 -	LASTZ	1	A---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTA-----ACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT-------
droWil1	scaffold_180955:104826-104946 +	LASTZ	1	GGTTTGCTTATTTGCCCA---TCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTT-----ATCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACA---------
droVir3	scaffold_13049:18083575-18083698 -	LASTZ	1	CATTTCCTTCCTACCTCACAAAACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA-TTC-----AATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGTTT------
droMoj3	scaffold_6680:23648550-23648660 -	LASTZ	1	----------------------ACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAAT---TTAACTTA--ACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCA-
droGri2	scaffold_15110:24135484-24135597 -	LASTZ	1	CAGCCAACTAC----------TATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA-CTT-----GACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAATT------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG-TTT-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTG------
droSim1	GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTT-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTG------
droSec1	GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---T-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTG------
droYak2	GAGTTCC---G----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATTG------
droEre2	GAGTTCCT--A----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA-TCT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTG------
droEug1	GAGCTCCA--A----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTT-----AACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGTTT------
droBia1	GAGCTCCT--C----------AGCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTT-----AACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTT------
droTak1	GAGCTCCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-CTT-----AACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGATT------
droEle1	GAGTTCCTG-G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGAAT------
droRho1	GAGTTTCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATA-TTT-----A-CAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGTTTT-----
droFic1	GAGCTCCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA-CTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGAAA------
droKik1	GAGTTCCTGGA----------AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TA-TTT-----ATCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTATGAAGT
droAna3	GAGCTCCT--A----------AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATT-----ATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAAC----------
droBip1	GAGATCCT--A----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAT-ATT-----TAAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACATTT------
dp4	G---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTA-----ACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT-------
droPer1	A---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTA-----ACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT-------
droWil1	GGTTTGCTTATTTGCCCA---TCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTT-----ATCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACA---------
droVir3	CATTTCCTTCCTACCTCACAAAACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA-TTC-----AATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGTTT------
droMoj3	----------------------ACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAAT---TTAACTTA--ACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCA-
droGri2	CAGCCAACTAC----------TATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA-CTT-----GACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAATT------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTT-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTG------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	474509.00	8652.00	180667.00	743.00	284447.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	57920.00	2182.00	31932.00	134.00	23672.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	11957.00	140.00	5477.00	26.00	6314.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	11773.00	229.00	8981.00	33.00	2530.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	3011.00	7.00	1242.00	6.00	1756.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	1709.00	16.00	1514.00	4.00	175.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	1424.00	26.00	447.00	1.00	950.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	1022.00	2.00	973.00	5.00	42.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	1005.00	5.00	284.00	0.00	716.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	989.00	3.00	398.00	1.00	587.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	947.00	6.00	353.00	2.00	586.00
......................................TTTTGATTGTTxCTCAGAAAGCC.............................................................................	22	1	847.00	0.00	354.00	0.00	493.00
......................................TTTTGATTGTTGCTCAxAAAGCC.............................................................................	22	1	816.00	0.00	293.00	1.00	522.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	761.00	20.00	285.00	5.00	451.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	757.00	26.00	433.00	1.00	297.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	735.00	10.00	294.00	3.00	428.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	653.00	20.00	503.00	1.00	129.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	624.00	16.00	241.00	0.00	367.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	552.00	24.00	215.00	0.00	313.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	521.00	2.00	488.00	2.00	29.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	477.00	22.00	222.00	0.00	233.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	473.00	5.00	85.00	0.00	383.00
......................................................................................CTTTCGAGCAATAATTGAAACC..............................	22	1	450.00	13.00	232.00	0.00	205.00
......................................TTTTGATTGTTGCTCAGAAAA...............................................................................	21	1	417.00	0.00	403.00	3.00	11.00
......................................TTTTGATTGTTGCTCAxAAAGC..............................................................................	21	1	396.00	0.00	201.00	0.00	195.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	390.00	11.00	147.00	0.00	232.00
......................................TTTTGATTGTTGCTCAGAAAGCCG............................................................................	24	1	353.00	0.00	136.00	0.00	217.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	265.00	12.00	63.00	0.00	190.00
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	1	259.00	14.00	143.00	2.00	100.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	242.00	26.00	85.00	1.00	130.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	231.00	47.00	80.00	0.00	104.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	228.00	9.00	87.00	0.00	132.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	219.00	10.00	81.00	0.00	128.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	197.00	1.00	73.00	2.00	121.00
.......................................TTTTATTGTTGCTCAGAAAGCC.............................................................................	22	1	187.00	0.00	73.00	1.00	113.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	172.00	0.00	94.00	0.00	78.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	165.00	37.00	55.00	0.00	73.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	165.00	4.00	146.00	0.00	15.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	161.00	9.00	66.00	0.00	86.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	159.00	0.00	75.00	0.00	84.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	147.00	12.00	55.00	1.00	79.00
......................................TTTTGATTGTTGCTCAGG..................................................................................	18	1	140.00	0.00	136.00	0.00	4.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	137.00	10.00	48.00	0.00	79.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	133.00	3.00	52.00	0.00	78.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	133.00	8.00	62.00	2.00	61.00
......................................TTTTCATTGTTGCTCAGAAAGCC.............................................................................	23	1	130.00	1.00	44.00	0.00	85.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	128.00	24.00	26.00	0.00	78.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	128.00	9.00	38.00	0.00	81.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	126.00	17.00	37.00	0.00	72.00
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	1	126.00	0.00	45.00	0.00	81.00
......................................TTTTGATTGTTGGTCAGAAAGCC.............................................................................	23	1	124.00	5.00	28.00	0.00	91.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	122.00	7.00	42.00	0.00	73.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	118.00	4.00	48.00	0.00	66.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	112.00	14.00	38.00	0.00	60.00
......................................TTTTGATTGTTGCTCAAAAAGC..............................................................................	22	1	100.00	2.00	66.00	0.00	32.00
......................................TTTTGACTGTTGCTCAGAAAGCC.............................................................................	23	1	98.00	8.00	39.00	0.00	51.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	95.00	5.00	42.00	0.00	48.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	92.00	19.00	32.00	0.00	41.00
......................................TTTTGATTGTTGCTCAGT..................................................................................	18	1	88.00	0.00	86.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	84.00	4.00	32.00	0.00	48.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	84.00	3.00	46.00	0.00	35.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	81.00	1.00	56.00	0.00	24.00
.....................................CTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	81.00	3.00	25.00	1.00	52.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	80.00	7.00	31.00	0.00	42.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	1	77.00	3.00	40.00	0.00	34.00
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	1	76.00	6.00	9.00	0.00	61.00
......................................TTTTGATTGTTGCCCAGAAAGC..............................................................................	22	1	74.00	5.00	38.00	0.00	31.00
......................................TTTTGATTGATGCTCAGAAAGCC.............................................................................	23	1	73.00	2.00	25.00	0.00	46.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	73.00	9.00	59.00	0.00	5.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	73.00	7.00	34.00	0.00	32.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	71.00	46.00	10.00	0.00	15.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	70.00	7.00	31.00	0.00	32.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	70.00	8.00	24.00	0.00	38.00
.........................................TGATTGTTGCTCAGAAAGCC.............................................................................	20	1	69.00	0.00	26.00	0.00	43.00
........................................TTTATTGTTGCTCAGAAAGCC.............................................................................	21	1	65.00	0.00	32.00	0.00	33.00
......................................TTTTGATTGTTGCTCAGAAGCC..............................................................................	22	1	64.00	0.00	41.00	0.00	23.00
......................................TTTTGATTGTTCCTCAGAAAGC..............................................................................	22	1	59.00	0.00	21.00	0.00	38.00
......................................ATTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	58.00	2.00	20.00	4.00	32.00
......................................TTTTGATTGxTCCTCAGAAAGCC.............................................................................	22	1	57.00	0.00	29.00	0.00	28.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	57.00	17.00	10.00	0.00	30.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	54.00	46.00	4.00	0.00	4.00
......................................TTTTGTTTGTTGCTCAGAAAGCC.............................................................................	23	1	53.00	4.00	9.00	0.00	40.00
......................................GTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	50.00	2.00	18.00	2.00	28.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	48.00	3.00	25.00	0.00	20.00
......................................TTTTGATTGTTACTCAGAAAGC..............................................................................	22	1	46.00	3.00	16.00	0.00	27.00
......................................TTTTGATTGTTxCTCAGAAAGC..............................................................................	21	1	43.00	0.00	28.00	0.00	15.00
......................................TTTTGATTGGTGCTCAGAAAGC..............................................................................	22	1	43.00	6.00	28.00	0.00	9.00
......................................TTTTGATTGTTGCTCAGAAT................................................................................	20	1	42.00	0.00	41.00	1.00	0.00
......................................TTTTGATTCTTGCTCAGAAAGCC.............................................................................	23	1	40.00	0.00	17.00	0.00	23.00
......................................TTTTGATTGTTGCTCACAAAGC..............................................................................	22	1	40.00	5.00	14.00	0.00	21.00
......................................TTTTGATTGTTGCTCAGAAAC...............................................................................	21	1	38.00	0.00	32.00	0.00	6.00
......................................TTTTGATTGTxxCTCAGAAAGCC.............................................................................	21	1	36.00	0.00	18.00	0.00	18.00
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	1	36.00	4.00	18.00	0.00	14.00
...........................................ATTGTTGCTCAGAAAGCC.............................................................................	18	1	34.00	0.00	11.00	0.00	23.00
......................................TTTTGATTGTTGCTCAAAAG................................................................................	20	1	34.00	0.00	22.00	0.00	12.00
......................................TTTTGATTGTTGCTCAGAAAGGC.............................................................................	23	1	34.00	15.00	5.00	0.00	14.00
......................................TTTTTATTGTTGCTCAGAAAGC..............................................................................	22	1	32.00	0.00	23.00	0.00	9.00
........................................TTGATTGTTGCTCAGAAAGC..............................................................................	20	1	32.00	1.00	17.00	0.00	14.00
......................................TTTTGATTGTTGCTGAGAAAGCC.............................................................................	23	1	31.00	0.00	12.00	0.00	19.00
......................................TTTTGAGTGTTGCTCAGAAAGCC.............................................................................	23	1	31.00	12.00	12.00	0.00	7.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	30.00	24.00	3.00	0.00	3.00

droSec1

GAGTTCCT--T----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---T-----ACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTG------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	53353.00	183.00	38375.00	14795.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	13050.00	75.00	7285.00	5690.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	3619.00	58.00	1053.00	2508.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	905.00	5.00	634.00	266.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	324.00	2.00	287.00	35.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	287.00	1.00	66.00	220.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	257.00	0.00	37.00	220.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	253.00	1.00	233.00	19.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	167.00	1.00	109.00	57.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	165.00	0.00	140.00	25.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	164.00	3.00	15.00	146.00
......................................................................................CTTTCGAGCAATAATTGAAACC..............................	22	1	151.00	2.00	86.00	63.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	137.00	3.00	71.00	63.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	117.00	0.00	10.00	107.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	115.00	0.00	14.00	101.00
......................................TTTTGATTGTTGCTCAGAAGCC..............................................................................	22	1	112.00	0.00	100.00	12.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	97.00	0.00	90.00	7.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	92.00	1.00	67.00	24.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	89.00	0.00	76.00	13.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	88.00	0.00	70.00	18.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	83.00	0.00	72.00	11.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	78.00	1.00	57.00	20.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	77.00	0.00	58.00	19.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	72.00	1.00	56.00	15.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	72.00	0.00	59.00	13.00
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	1	65.00	2.00	48.00	15.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	63.00	1.00	39.00	23.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	63.00	0.00	57.00	6.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	61.00	2.00	12.00	47.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	60.00	0.00	47.00	13.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	58.00	0.00	46.00	12.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	56.00	0.00	44.00	12.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	54.00	0.00	41.00	13.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	53.00	0.00	42.00	11.00
......................................TCTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	51.00	0.00	42.00	9.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	47.00	0.00	40.00	7.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	46.00	1.00	32.00	13.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	45.00	0.00	37.00	8.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	44.00	0.00	34.00	10.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	43.00	0.00	35.00	8.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	42.00	0.00	33.00	9.00
......................................TTTTGATTCTTGCTCAGAAAGCC.............................................................................	23	1	40.00	1.00	33.00	6.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	37.00	0.00	26.00	11.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	37.00	1.00	23.00	13.00
......................................TTTTGACTGTTGCTCAGAAAGCC.............................................................................	23	1	35.00	0.00	29.00	6.00
......................................TTTTGATTGATGCTCAGAAAGCC.............................................................................	23	1	34.00	0.00	19.00	15.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	33.00	0.00	22.00	11.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	33.00	0.00	20.00	13.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	32.00	0.00	16.00	16.00
......................................TTTTGATTGTTGCTCAxAAAGCC.............................................................................	22	1	31.00	0.00	19.00	12.00
......................................TTTTGATTGTTxCTCAGAAAGCC.............................................................................	22	1	30.00	0.00	27.00	3.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	30.00	0.00	20.00	10.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	28.00	0.00	19.00	9.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	28.00	0.00	23.00	5.00
......................................TTTTGATTGTTGCTTAGAAAGC..............................................................................	22	1	27.00	0.00	26.00	1.00
......................................TTTTCATTGTTGCTCAGAAAGCC.............................................................................	23	1	26.00	0.00	22.00	4.00
.......................................TTTTATTGTTGCTCAGAAAGCC.............................................................................	22	1	26.00	0.00	24.00	2.00
......................................TTTTGATTGTTGCTCAGTAAGCC.............................................................................	23	1	26.00	0.00	24.00	2.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	25.00	0.00	16.00	9.00
......................................TTTTGATTGTTGCTCAxAAAGC..............................................................................	21	1	24.00	0.00	14.00	10.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	23.00	0.00	8.00	15.00
......................................TTTTGAATGTTGCTCAGAAAGCC.............................................................................	23	1	23.00	0.00	7.00	16.00
......................................TTTTGATAGTTGCTCAGAAAGCC.............................................................................	23	1	21.00	0.00	7.00	14.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	21.00	0.00	12.00	9.00
......................................TTTTGATTGTTGCTCAGAAACC..............................................................................	22	1	21.00	0.00	9.00	12.00
......................................TTTTGATTGTTGCTCAGAAGC...............................................................................	21	1	21.00	0.00	19.00	2.00
......................................TTTTGATTGTTCCTCAGAAAGC..............................................................................	22	1	21.00	0.00	16.00	5.00
......................................TTTTGATxxTTGCTCAGAAAGC..............................................................................	20	1	21.00	0.00	8.00	13.00
......................................TTTTGATTGTTGCTCAGAATGCC.............................................................................	23	1	21.00	0.00	20.00	1.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	19.00	0.00	14.00	5.00
......................................TTTTGATTGTTGCTCAGAGAGC..............................................................................	22	1	19.00	0.00	14.00	5.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	19.00	0.00	12.00	7.00
......................................TTTTGGTTGTTGCTCAGAAAGC..............................................................................	22	1	19.00	0.00	15.00	4.00
......................................ATTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	18.00	1.00	7.00	10.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	17.00	0.00	14.00	3.00
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	1	17.00	0.00	13.00	4.00
......................................TTTTGATTGTTGCTCAAAAAGC..............................................................................	22	1	17.00	0.00	10.00	7.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	17.00	0.00	12.00	5.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	17.00	0.00	14.00	3.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	17.00	0.00	13.00	4.00
......................................TTTTGATTATTGCTCAGAAAGC..............................................................................	22	1	17.00	0.00	11.00	6.00
......................................TTTAGATTGTTGCTCAGAAAGCC.............................................................................	23	1	16.00	0.00	8.00	8.00
.....................................CTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	16.00	0.00	12.00	4.00
......................................GTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	16.00	0.00	9.00	7.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	16.00	2.00	8.00	6.00
.......................................TTTGATTGTTGCTCAGAAAG...............................................................................	20	1	15.00	0.00	12.00	3.00
......................................TTTTGATCGTTGCTCAGAAAGC..............................................................................	22	1	15.00	0.00	5.00	10.00
......................................TTTTGATTGTTGCTCGGAAAGC..............................................................................	22	1	15.00	0.00	13.00	2.00
......................................TTTCGATTGTTGCTCAGAAAGC..............................................................................	22	1	15.00	0.00	10.00	5.00
......................................TTTTGATTGTTGCTCAGAAAA...............................................................................	21	1	14.00	1.00	1.00	12.00
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	1	14.00	0.00	5.00	9.00
......................................TTCTGATTGTTGCTCAGAAAGC..............................................................................	22	1	14.00	0.00	9.00	5.00
......................................TTTTGATTGTCGCTCAGAAAGC..............................................................................	22	1	14.00	1.00	9.00	4.00
......................................TTTTGATTGTTGTTCAGAAAGC..............................................................................	22	1	14.00	0.00	12.00	2.00
......................................TTTTGATTGTTGCACAGAAAGCC.............................................................................	23	1	14.00	0.00	14.00	0.00
......................................TTTTGATTGTTGCTCAAAAG................................................................................	20	1	14.00	0.00	1.00	13.00
......................................TTTTGATTGTTGCTCAGATAGCC.............................................................................	23	1	13.00	0.00	12.00	1.00
......................................TTTTGATTxTTGCTCAGAAAGCC.............................................................................	22	1	12.00	0.00	8.00	4.00
......................................TTTTGATTGTAGCTCAGAAAGCC.............................................................................	23	1	12.00	0.00	12.00	0.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	12.00	0.00	6.00	6.00
......................................TTTTGATTGTTACTCAGAAAGC..............................................................................	22	1	12.00	0.00	6.00	6.00

droYak2

GAGTTCC---G----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATTG------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	3	19220.33	2539.00	238.00	15.00	789.67	15638.67
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	3	3081.33	512.00	64.33	3.00	188.33	2313.67
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	3	920.00	54.33	4.67	1.00	20.33	839.67
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	3	798.67	34.67	54.67	1.67	142.33	565.33
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	3	134.67	6.33	0.33	0.00	2.33	125.67
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	3	109.33	1.67	6.33	0.33	17.67	83.33
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	3	77.33	1.67	0.33	0.00	1.67	73.67
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	3	65.33	0.00	3.33	0.00	5.67	56.33
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	3	55.67	6.67	1.33	0.00	11.33	36.33
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	3	54.00	7.00	8.33	0.00	12.00	26.67
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	3	52.00	7.00	0.33	0.00	10.00	34.67
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	3	48.00	5.67	2.00	0.00	7.00	33.33
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	3	43.33	0.33	3.33	0.00	6.33	33.33
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	3	40.33	6.00	6.33	0.00	24.33	3.67
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	3	38.67	1.00	0.00	0.33	1.33	36.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	3	33.33	4.67	0.67	0.00	2.00	26.00
......................................TTTTGATTGTTGCTCAGAAAA...............................................................................	21	3	32.00	0.00	0.33	0.00	0.33	31.33
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	3	30.33	7.67	0.67	0.00	10.33	11.67
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	3	27.67	0.67	2.67	0.33	8.00	16.00
......................................TTTTGATTGTTGCTCAxAAAGCC.............................................................................	22	3	27.33	0.00	0.00	0.00	0.00	27.33
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	3	27.00	7.00	0.33	0.00	3.00	16.67
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	3	26.33	2.00	0.00	0.00	2.33	22.00
......................................................................................CTTTCGAGCAATAATTGAAACC..............................	22	2	38.50	7.00	1.00	0.00	12.00	18.50
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	3	25.67	5.33	0.00	0.00	6.00	14.33
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	3	22.67	2.33	2.33	0.00	16.00	2.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	3	22.33	1.00	0.67	0.00	0.67	20.00
......................................TTTTGATTGTTGCTCAGAAAGCCG............................................................................	24	3	21.67	0.00	0.00	0.00	0.00	21.67
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	3	21.33	4.33	0.00	0.00	3.67	13.33
......................................TTTTGATTGTTxCTCAGAAAGCC.............................................................................	22	3	21.33	0.00	0.00	0.00	0.00	21.33
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	3	20.00	2.67	0.00	0.00	0.33	17.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	3	18.00	10.67	0.67	0.00	6.67	0.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	3	15.67	2.00	0.33	0.00	0.00	13.33
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	3	14.67	6.00	1.33	0.00	6.33	1.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	3	14.00	6.00	1.00	0.00	1.00	6.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	3	13.67	6.00	0.00	0.00	1.33	6.33
......................................TTTTGATTGTTGCTCAxAAAGC..............................................................................	21	3	13.67	0.00	0.00	0.00	0.00	13.67
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	3	13.00	2.33	0.33	0.00	2.67	7.67
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	3	11.67	2.33	0.00	0.33	1.00	8.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	3	11.67	2.00	0.33	0.00	3.33	6.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	3	11.67	7.67	0.00	0.00	1.67	2.33
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	3	11.00	2.33	0.00	0.00	0.67	8.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	3	9.33	2.00	1.67	0.00	3.00	2.67
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	3	8.67	0.33	0.33	0.00	1.67	6.33
......................................TTTTGATTGATGCTCAGAAAGCC.............................................................................	23	3	8.67	1.00	0.00	0.00	0.67	7.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	3	8.67	3.00	0.00	0.00	0.33	5.33
......................................TTGTGATTGTTGCTCAGAAAGCC.............................................................................	23	3	8.67	4.67	0.67	0.00	3.33	0.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	3	8.33	2.00	0.00	0.00	1.33	5.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	3	8.33	1.33	1.33	0.00	5.33	0.33
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	3	8.33	2.33	0.67	0.00	1.33	4.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	3	8.33	2.33	0.00	0.00	1.67	4.33
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	3	7.67	2.33	0.33	0.00	1.00	4.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	3	7.33	3.33	0.33	0.00	0.67	3.00
......................................TTTTGATTGTTGCTCAGAACGC..............................................................................	22	3	7.00	1.67	0.00	0.00	2.67	2.67
.......................................TTTTATTGTTGCTCAGAAAGCC.............................................................................	22	3	6.67	0.00	0.00	0.00	0.00	6.67
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	3	6.67	0.67	0.33	0.00	0.00	5.67
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	3	6.33	2.67	0.00	0.00	0.00	3.67
......................................TTTTGATTGTTGCTCAGG..................................................................................	18	3	6.33	0.00	0.00	0.00	0.00	6.33
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	3	6.00	2.00	1.33	0.00	1.00	1.67
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	3	6.00	3.33	0.33	0.00	1.00	1.33
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	3	5.67	1.00	0.00	0.00	0.33	4.33
......................................TTTTGATTGTTGCTCAGCAAGC..............................................................................	22	3	5.67	3.67	1.00	0.00	1.00	0.00
......................................TTTTCATTGTTGCTCAGAAAGCC.............................................................................	23	3	5.67	1.00	0.00	0.00	0.67	4.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	3	5.33	0.67	0.33	0.00	2.67	1.67
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	3	5.33	0.67	0.00	0.00	0.33	4.33
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	3	5.33	2.00	0.33	0.00	2.67	0.33
......................................TTTTGATTGTTGCTCATAAAG...............................................................................	21	3	5.33	0.33	1.33	0.00	3.33	0.33
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	3	5.33	0.67	0.00	0.00	0.33	4.33
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	3	5.33	0.00	0.00	0.00	0.33	5.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	3	5.00	2.00	0.00	0.00	2.67	0.33
......................................TTTTGATTGTTGCTCAGACAGC..............................................................................	22	3	5.00	1.00	0.33	0.00	0.67	3.00
......................................TTTTGATTGTTGCTCATAAATCC.............................................................................	23	3	5.00	1.00	0.33	0.00	3.67	0.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	3	5.00	1.00	0.00	0.00	0.00	4.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	3	4.67	1.67	0.00	0.00	1.00	2.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	3	4.67	0.67	0.67	0.00	0.67	2.67
......................................TGTTGATTGTTGCTCAGAAAGCC.............................................................................	23	3	4.67	2.33	0.00	0.00	1.33	1.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	3	4.67	0.67	0.33	0.00	0.00	3.67
......................................TTTTGATTGTTGCTCAGACAG...............................................................................	21	3	4.67	0.33	0.67	0.00	2.67	1.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	3	4.33	1.00	0.00	0.00	3.33	0.00
......................................TTTTGATTGTTGCTCAAAAAGC..............................................................................	22	3	4.33	0.33	0.33	0.00	0.33	3.33
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	3	4.33	1.67	0.00	0.00	1.00	1.67
......................................TTTTGACTGTTGCTCAGAAAGCC.............................................................................	23	3	4.00	1.67	0.00	0.00	0.33	2.00
......................................TTTTGATTGTTGGTCAGAAAGCC.............................................................................	23	3	4.00	1.67	0.00	0.00	0.33	2.00
......................................TTTTGATTGTTTCTCATAAAGCC.............................................................................	23	3	4.00	0.67	0.33	0.00	3.00	0.00
......................................TTTTGATTGTTGCTCTGAAAGCC.............................................................................	23	3	3.67	1.67	0.00	0.00	1.67	0.33
......................................TTTTGATTGTTTCTCAGAAAG...............................................................................	21	3	3.67	0.00	1.00	0.00	2.00	0.67
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	3	3.33	2.33	0.00	0.00	0.00	1.00
......................................TTTTGATTGTTGCTCAGAAAGGC.............................................................................	23	3	3.33	3.33	0.00	0.00	0.00	0.00
.....................................CTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	3	3.33	1.67	0.00	0.00	0.33	1.33
......................................TTTTGATTGTTGCTCAGT..................................................................................	18	3	3.33	0.00	0.33	0.00	0.33	2.67
......................................TTTGGATTGTTGCTCAGAAAGCC.............................................................................	23	3	3.00	0.33	0.00	0.00	2.67	0.00
......................................TTTTGATTGTTGCTCAGAACG...............................................................................	21	3	3.00	0.00	0.33	0.00	2.33	0.33
......................................TTTTGAGTGTTGCTCAGAAAGCC.............................................................................	23	3	3.00	1.67	0.33	0.00	0.67	0.33
......................................TTTTGATTGTTGCGCAGAAAGCC.............................................................................	23	3	3.00	0.33	0.33	0.00	1.33	1.00
......................................TTTTGATTGTTGCTCAGAAGCC..............................................................................	22	3	3.00	0.33	0.00	0.00	0.00	2.67
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	3	3.00	0.00	0.00	0.00	0.00	3.00
......................................TTTTGATTGTTGCTCAGCAAG...............................................................................	21	3	3.00	0.00	1.00	0.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGTAAGCC.............................................................................	23	3	3.00	2.67	0.00	0.00	0.33	0.00
......................................TTTTGATTGTTGCTCCGAAAGC..............................................................................	22	3	3.00	0.67	0.00	0.00	2.00	0.33
......................................TTTTGGTTGTTGCTCAGAAAGC..............................................................................	22	3	2.67	0.33	0.33	0.00	1.00	1.00
......................................TCTTGATTGTTGCTCAGAAAGC..............................................................................	22	3	2.67	0.33	0.33	0.00	0.33	1.67
.........................................TGATTGTTGCTCAGAAAGCC.............................................................................	20	3	2.67	0.00	0.00	0.00	0.33	2.33

droEre2

GAGTTCCT--A----------CACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA-TCT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTG------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	21198.00	4020.00	1547.00	0.00	15631.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	8187.00	965.00	492.00	0.00	6730.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	3550.00	125.00	338.00	0.00	3087.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	553.00	13.00	26.00	0.00	514.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	368.00	73.00	7.00	0.00	288.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	336.00	9.00	34.00	0.00	293.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	333.00	204.00	32.00	0.00	97.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	277.00	131.00	45.00	0.00	101.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	240.00	2.00	26.00	0.00	212.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	229.00	90.00	22.00	0.00	117.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	209.00	6.00	4.00	0.00	199.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	148.00	1.00	1.00	0.00	146.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	145.00	10.00	2.00	0.00	133.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	139.00	8.00	2.00	0.00	129.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	121.00	4.00	9.00	0.00	108.00
......................................................................................CTTTCGAGCAATAATTGAAACC..............................	22	1	114.00	4.00	14.00	0.00	96.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	101.00	9.00	15.00	0.00	77.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	96.00	12.00	0.00	0.00	84.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	91.00	23.00	13.00	0.00	55.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	90.00	50.00	4.00	0.00	36.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	1	81.00	1.00	0.00	0.00	80.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	1	80.00	24.00	6.00	0.00	50.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	74.00	6.00	3.00	0.00	65.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	69.00	26.00	5.00	0.00	38.00
......................................TTTTGATTGTTGATCAGAAAGC..............................................................................	22	1	59.00	0.00	1.00	0.00	58.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	58.00	4.00	7.00	0.00	47.00
......................................TTTTGATTGTTGCTAAGAAAGC..............................................................................	22	1	52.00	1.00	0.00	0.00	51.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	47.00	14.00	3.00	0.00	30.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	44.00	5.00	4.00	0.00	35.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	37.00	26.00	1.00	0.00	10.00
......................................TTTTGATTGTTGCTCATAAAG...............................................................................	21	1	37.00	4.00	9.00	0.00	24.00
......................................TTTTGATTGTTGCTCATAAATCC.............................................................................	23	1	36.00	26.00	8.00	0.00	2.00
......................................TTTTTATTGTTGCTCAGAAAGC..............................................................................	22	1	36.00	1.00	0.00	0.00	35.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	36.00	6.00	0.00	0.00	30.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	35.00	13.00	0.00	0.00	22.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	33.00	9.00	2.00	0.00	22.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	32.00	9.00	4.00	0.00	19.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	31.00	4.00	1.00	0.00	26.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	30.00	13.00	10.00	0.00	7.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	30.00	22.00	1.00	0.00	7.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	29.00	17.00	7.00	0.00	5.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	29.00	0.00	1.00	0.00	28.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	29.00	8.00	4.00	0.00	17.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	28.00	11.00	4.00	0.00	13.00
......................................TTTTGATTGTTTCTCATAAAGCC.............................................................................	23	1	28.00	23.00	5.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	28.00	14.00	6.00	0.00	8.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	27.00	3.00	2.00	0.00	22.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	27.00	5.00	1.00	0.00	21.00
......................................TTTTGATTGTTTCTCAGAAAG...............................................................................	21	1	26.00	3.00	0.00	0.00	23.00
......................................TTTTGATTTTTGCTCAGAAAGC..............................................................................	22	1	25.00	6.00	0.00	0.00	19.00
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	1	25.00	0.00	0.00	0.00	25.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	25.00	6.00	0.00	0.00	19.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	25.00	3.00	5.00	0.00	17.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	24.00	1.00	1.00	0.00	22.00
......................................TTTTGATTGTTTCTCAGAAATCC.............................................................................	23	1	24.00	16.00	5.00	0.00	3.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	23.00	6.00	0.00	0.00	17.00
......................................TTTTGATTGTTGCTAAGAAAG...............................................................................	21	1	23.00	0.00	1.00	0.00	22.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	22.00	6.00	1.00	0.00	15.00
......................................TTTTTATTGTTGCTCAGAAAG...............................................................................	21	1	21.00	0.00	0.00	0.00	21.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	21.00	3.00	1.00	0.00	17.00
......................................TTTTGATTGTTGCTCAGAAAT...............................................................................	21	1	21.00	2.00	8.00	0.00	11.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	21.00	5.00	0.00	0.00	16.00
......................................TTTTGATTGTTGCTCAGAAAA...............................................................................	21	1	20.00	0.00	4.00	0.00	16.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	20.00	6.00	2.00	0.00	12.00
......................................TTTTGATTGTTGATCAGAAAG...............................................................................	21	1	20.00	0.00	1.00	0.00	19.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	20.00	5.00	2.00	0.00	13.00
......................................TTGTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	19.00	9.00	1.00	0.00	9.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	19.00	5.00	2.00	0.00	12.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	18.00	9.00	1.00	0.00	8.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	18.00	6.00	1.00	0.00	11.00
......................................TTTTGATTCTTGCTCAGAAAGCC.............................................................................	23	1	17.00	6.00	2.00	0.00	9.00
......................................TTATGATTGTTGCTCAGAAAGCC.............................................................................	23	1	17.00	0.00	0.00	0.00	17.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	16.00	4.00	1.00	0.00	11.00
......................................TTTTGATTGTTGCTCAGAAACC..............................................................................	22	1	15.00	2.00	1.00	0.00	12.00
......................................TTTTGATTGTTGCTCAGAAAAC..............................................................................	22	1	15.00	5.00	2.00	0.00	8.00
......................................TTTTGATTGTTGCTCAAAAAGC..............................................................................	22	1	15.00	2.00	0.00	0.00	13.00
......................................TCTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	15.00	1.00	0.00	0.00	14.00
......................................TTTTGATTGTTGCTCACAAAGC..............................................................................	22	1	14.00	7.00	2.00	0.00	5.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	14.00	0.00	0.00	0.00	14.00
......................................TTTTCATTGTTGCTCAGAAAGCC.............................................................................	23	1	13.00	2.00	0.00	0.00	11.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	13.00	3.00	3.00	0.00	7.00
......................................TTTGGATTGTTGCTCAGAAAGCC.............................................................................	23	1	13.00	6.00	0.00	0.00	7.00
......................................TTTTGATTTTTTCTCAGAAAGCC.............................................................................	23	1	13.00	12.00	1.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAACGC..............................................................................	22	1	13.00	2.00	4.00	0.00	7.00
......................................TTCTGATTGTTGCTCAGAAAGC..............................................................................	22	1	12.00	0.00	1.00	0.00	11.00
......................................................................................CTTTCGAGCAATAATTGAAAC...............................	21	1	12.00	1.00	2.00	0.00	9.00
......................................TTTTGATTGTTGCTCATAAAACC.............................................................................	23	1	12.00	12.00	0.00	0.00	0.00
......................................TTTTGATTGTTCCTCAGAAAGC..............................................................................	22	1	12.00	2.00	0.00	0.00	10.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	12.00	1.00	1.00	0.00	10.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	12.00	4.00	3.00	0.00	5.00
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	1	11.00	4.00	0.00	0.00	7.00
......................................TTTTGATTGTTGCCCAGAAAGC..............................................................................	22	1	11.00	2.00	2.00	0.00	7.00
......................................TTTTGATTTTTGCTCAGAAAG...............................................................................	21	1	11.00	1.00	1.00	0.00	9.00
......................................TTTTGATTGTTGCTCAGAAGCC..............................................................................	22	1	11.00	0.00	0.00	0.00	11.00
........................................TTGATTGTTGCTCAGAAAGC..............................................................................	20	1	11.00	1.00	0.00	0.00	10.00
......................................TTTTGATxxTTGCTCAGAAAGC..............................................................................	20	1	11.00	0.00	0.00	0.00	11.00
......................................CTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	10.00	1.00	1.00	0.00	8.00
......................................TTTTGATTGTTGCTCAGAGAGC..............................................................................	22	1	10.00	0.00	2.00	0.00	8.00
......................................................................................CTTTCGAGCAATAATTGA..................................	18	1	10.00	0.00	0.00	0.00	10.00
......................................TTTTGATTGTTGCTCCGAAAGC..............................................................................	22	1	10.00	2.00	1.00	0.00	7.00
......................................TTTTGATTGTTGCTCAGAATGCC.............................................................................	23	1	10.00	1.00	1.00	0.00	8.00

droEug1

GAGCTCCA--A----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTT-----AACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGTTT------

Size

Hit Count

Total Norm

droBia1

GAGCTCCT--C----------AGCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTT-----AACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTT------

Size

Hit Count

Total Norm

droTak1

GAGCTCCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-CTT-----AACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGATT------

Size

Hit Count

Total Norm

droEle1

GAGTTCCTG-G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGAAT------

Size

Hit Count

Total Norm

droRho1

GAGTTTCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATA-TTT-----A-CAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGTTTT-----

Size

Hit Count

Total Norm

droFic1

GAGCTCCT--G----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA-CTT-----AACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGAAA------

Size

Hit Count

Total Norm

droKik1

GAGTTCCTGGA----------AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TA-TTT-----ATCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTATGAAGT

Size

Hit Count

Total Norm

droAna3

GAGCTCCT--A----------AATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATT-----ATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAAC----------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	9516.00	136.00	6924.00	1980.00	476.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	6669.00	58.00	5510.00	894.00	207.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	1822.00	38.00	1199.00	568.00	17.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	474.00	3.00	417.00	42.00	12.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	245.00	3.00	202.00	37.00	3.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	185.00	6.00	141.00	38.00	0.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	173.00	4.00	112.00	54.00	3.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	146.00	1.00	117.00	16.00	12.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	126.00	9.00	77.00	40.00	0.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	110.00	3.00	67.00	15.00	25.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	1	105.00	0.00	92.00	7.00	6.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	97.00	1.00	77.00	4.00	15.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	91.00	0.00	35.00	56.00	0.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	81.00	1.00	72.00	8.00	0.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	80.00	1.00	57.00	22.00	0.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	66.00	1.00	22.00	20.00	23.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	64.00	1.00	44.00	16.00	3.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	60.00	1.00	56.00	2.00	1.00
......................................TTTTGATTGTTGATCAGAAAGC..............................................................................	22	1	55.00	1.00	49.00	5.00	0.00
......................................TTGTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	54.00	0.00	45.00	9.00	0.00
......................................................................................CTTTCGAGCAATAATTGAAACC..............................	22	1	53.00	2.00	28.00	23.00	0.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	42.00	0.00	34.00	8.00	0.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	40.00	0.00	40.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	37.00	0.00	28.00	9.00	0.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	37.00	1.00	34.00	0.00	2.00
......................................TTGTGATTGTTGCTCAGAAAGC..............................................................................	22	1	35.00	0.00	31.00	3.00	1.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	32.00	0.00	18.00	8.00	6.00
......................................TTTTGATTGTTGCTAAGAAAGC..............................................................................	22	1	30.00	0.00	27.00	2.00	1.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	26.00	0.00	24.00	2.00	0.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	25.00	0.00	18.00	5.00	2.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	25.00	2.00	20.00	3.00	0.00
......................................TTTTGATTGTTGCTCAGAAAAC..............................................................................	22	1	25.00	1.00	18.00	1.00	5.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	24.00	0.00	14.00	10.00	0.00
......................................TTTTGATTGTTTCTCAGAAATCC.............................................................................	23	1	22.00	0.00	17.00	2.00	3.00
......................................TTTTGATTGTTTCTCAGAAAG...............................................................................	21	1	22.00	0.00	19.00	3.00	0.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	22.00	0.00	18.00	3.00	1.00
......................................TTTTGATTGTTGCTCAGAAACC..............................................................................	22	1	21.00	0.00	15.00	4.00	2.00
......................................TTTTTATTGTTGCTCAGAAAGC..............................................................................	22	1	20.00	0.00	20.00	0.00	0.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	20.00	1.00	6.00	10.00	3.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	19.00	1.00	15.00	1.00	2.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	19.00	1.00	15.00	3.00	0.00
......................................TTTTGATTGTTGATCAGAAAG...............................................................................	21	1	19.00	0.00	17.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGAAAA...............................................................................	21	1	18.00	0.00	16.00	2.00	0.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	17.00	0.00	14.00	3.00	0.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	16.00	0.00	12.00	4.00	0.00
......................................TTTTGATTGTTGCTCAGAAAT...............................................................................	21	1	16.00	0.00	16.00	0.00	0.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	15.00	0.00	12.00	3.00	0.00
......................................TTTTGATTGTTTCTCAGAAATC..............................................................................	22	1	15.00	0.00	13.00	0.00	2.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	15.00	1.00	11.00	1.00	2.00
......................................TTGTGATTGTTGCTCAGAAAG...............................................................................	21	1	14.00	0.00	13.00	1.00	0.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	14.00	0.00	0.00	13.00	1.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	14.00	0.00	0.00	12.00	2.00
......................................TTTTGATTGTTCCTCAGAAAGC..............................................................................	22	1	14.00	1.00	8.00	2.00	3.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	14.00	0.00	5.00	2.00	7.00
......................................TTTTGATTGTTGCTCGGAAAGC..............................................................................	22	1	14.00	1.00	9.00	3.00	1.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	14.00	0.00	5.00	5.00	4.00
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	1	13.00	0.00	1.00	10.00	2.00
......................................TTTTGATTGTTGCTCATAAAG...............................................................................	21	1	13.00	0.00	4.00	7.00	2.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	13.00	0.00	8.00	5.00	0.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	12.00	1.00	1.00	4.00	6.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	12.00	1.00	8.00	3.00	0.00
......................................TTTTGATTGTTGCTCACAAAGC..............................................................................	22	1	12.00	0.00	2.00	7.00	3.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	10.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAGAGC..............................................................................	22	1	11.00	0.00	9.00	2.00	0.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	11.00	0.00	11.00	0.00	0.00
........................................TTGATTGTTGCTCAGAAAGC..............................................................................	20	1	11.00	0.00	11.00	0.00	0.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	11.00	0.00	5.00	4.00	2.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	11.00	0.00	8.00	2.00	1.00
.......................................TTTGATTGTTGCTCAGAAAG...............................................................................	20	1	9.00	0.00	8.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGAA.............................................................................	23	1	9.00	0.00	8.00	1.00	0.00
......................................TCTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	9.00	0.00	8.00	1.00	0.00
......................................TTTTGATTGTTTCTCATAAAGCC.............................................................................	23	1	9.00	0.00	3.00	1.00	5.00
......................................TTTTGATTGTCGCTCAGAAAGC..............................................................................	22	1	9.00	0.00	7.00	2.00	0.00
......................................TTTTGATTTTTGCTCAGAAAGC..............................................................................	22	1	9.00	0.00	5.00	0.00	4.00
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	1	9.00	0.00	9.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	9.00	0.00	1.00	8.00	0.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	9.00	0.00	8.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGCTT............................................................................	24	1	9.00	1.00	6.00	2.00	0.00
......................................TTTGGATTGTTGCTCAGAAAGCC.............................................................................	23	1	9.00	0.00	0.00	7.00	2.00
......................................TTTTGATTGTTGCTCAGAACGC..............................................................................	22	1	9.00	0.00	0.00	8.00	1.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	9.00	0.00	4.00	5.00	0.00
........................................TTTATTGTTGCTCAGAAAGC..............................................................................	20	1	9.00	0.00	9.00	0.00	0.00
......................................TTTTGATTGTTGCCCAGAAAGC..............................................................................	22	1	8.00	0.00	6.00	1.00	1.00
......................................TTTTGATTGTTGCTCAGT..................................................................................	18	1	8.00	0.00	4.00	4.00	0.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	8.00	0.00	4.00	3.00	1.00
......................................TTTTGATTGTTGCTCAGAAGC...............................................................................	21	1	8.00	0.00	8.00	0.00	0.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	7.00	1.00	0.00
......................................TTTTGGTTGTTGCTCAGAAAGC..............................................................................	22	1	8.00	0.00	4.00	2.00	2.00
......................................GTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	5.00	3.00	0.00
......................................TTTTGATTGTTACTCAGAAAGC..............................................................................	22	1	8.00	1.00	5.00	1.00	1.00
......................................TTTTGATTGTTGCTAAGAAAG...............................................................................	21	1	8.00	0.00	8.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	8.00	0.00	2.00	3.00	3.00
......................................TTTCGATTGTTGCTCAGAAAGC..............................................................................	22	1	8.00	0.00	4.00	3.00	1.00
......................................TTTTGATTGTTGCTCTGAAAGC..............................................................................	22	1	7.00	0.00	4.00	2.00	1.00
......................................TTTTGCTTGTTGCTCAGAAAGC..............................................................................	22	1	7.00	0.00	2.00	4.00	1.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	1	7.00	0.00	6.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAATCCT............................................................................	24	1	7.00	0.00	7.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAGAG...............................................................................	21	1	7.00	0.00	4.00	3.00	0.00
......................................TTCTGATTGTTGCTCAGAAAGC..............................................................................	22	1	7.00	0.00	4.00	2.00	1.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	7.00	0.00	6.00	1.00	0.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	7.00	0.00	3.00	4.00	0.00

droBip1

GAGATCCT--A----------AACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAT-ATT-----TAAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACATTT------

Size

Hit Count

Total Norm

dp4

G---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTA-----ACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT-------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	8439.00	21.00	6602.00	1793.00	23.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	2546.00	6.00	1872.00	663.00	5.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	613.00	12.00	203.00	397.00	1.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	99.00	0.00	70.00	28.00	1.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	61.00	1.00	12.00	48.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	48.00	0.00	30.00	18.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	45.00	0.00	30.00	15.00	0.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	44.00	0.00	37.00	7.00	0.00
......................................................................................CTTTCGAGCAATTATCAAAGCC..............................	22	1	40.00	0.00	32.00	8.00	0.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	35.00	0.00	32.00	3.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	32.00	0.00	29.00	2.00	1.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	29.00	0.00	27.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	28.00	0.00	1.00	25.00	2.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	27.00	0.00	18.00	9.00	0.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	26.00	0.00	25.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	25.00	4.00	8.00	13.00	0.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	25.00	0.00	23.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	24.00	0.00	16.00	7.00	1.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	23.00	0.00	20.00	3.00	0.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	23.00	0.00	19.00	4.00	0.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	21.00	0.00	15.00	6.00	0.00
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	1	20.00	0.00	17.00	3.00	0.00
.....................................TTTTTGATTGTTGCTCAGAAAGC..............................................................................	23	1	20.00	0.00	19.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	19.00	0.00	17.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	19.00	0.00	16.00	3.00	0.00
......................................TTGTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	18.00	0.00	15.00	3.00	0.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	18.00	0.00	15.00	3.00	0.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	16.00	0.00	6.00	10.00	0.00
............................ATTTATGTATTTTTGATT............................................................................................	18	3	5.33	0.00	5.33	0.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	16.00	0.00	12.00	4.00	0.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	15.00	0.00	12.00	3.00	0.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	15.00	0.00	13.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	15.00	1.00	6.00	8.00	0.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	14.00	0.00	11.00	3.00	0.00
......................................TTTTGATTGTTGCTCAGTAAGCC.............................................................................	23	1	14.00	0.00	14.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	14.00	0.00	10.00	4.00	0.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	13.00	0.00	7.00	6.00	0.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	13.00	0.00	11.00	2.00	0.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	13.00	0.00	13.00	0.00	0.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	13.00	0.00	13.00	0.00	0.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	12.00	0.00	10.00	2.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGGC.............................................................................	23	1	12.00	0.00	9.00	3.00	0.00
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	1	12.00	0.00	9.00	3.00	0.00
......................................TTATGATTGTTGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	5.00	6.00	0.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	1	11.00	0.00	7.00	4.00	0.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	10.00	1.00	0.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	11.00	1.00	9.00	1.00	0.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	11.00	0.00	10.00	1.00	0.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	10.00	0.00	9.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	1	10.00	0.00	9.00	1.00	0.00
......................................TGTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	7.00	3.00	0.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	10.00	0.00	10.00	0.00	0.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	10.00	0.00	6.00	4.00	0.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	10.00	0.00	1.00	8.00	1.00
......................................TTTGGATTGTTGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	7.00	3.00	0.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	10.00	0.00	7.00	3.00	0.00
......................................TTTTGATTGTTGCTCTGAAAGCC.............................................................................	23	1	10.00	0.00	10.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	9.00	0.00	5.00	4.00	0.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	9.00	0.00	7.00	2.00	0.00
......................................TTTTGATTGATGCTCAGAAAGCC.............................................................................	23	1	9.00	0.00	8.00	1.00	0.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	8.00	0.00	8.00	0.00	0.00
......................................TTTTGATTGTTGGTCAGAAAGCC.............................................................................	23	1	8.00	0.00	8.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGCAAGC..............................................................................	22	1	8.00	0.00	8.00	0.00	0.00
......................................TTTTGAGTGTTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	6.00	2.00	0.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	6.00	2.00	0.00
......................................ATTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	7.00	0.00	4.00	1.00	2.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	7.00	1.00	5.00	1.00	0.00
......................................TTTTGATTGTTGCGCAGAAAGCC.............................................................................	23	1	7.00	0.00	6.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	1	7.00	0.00	5.00	2.00	0.00
......................................TTTTGATTGTTGCTCCGAAAGC..............................................................................	22	1	6.00	0.00	5.00	1.00	0.00
......................................TTTTGTTTGTTGCTCAGAAAGCC.............................................................................	23	1	6.00	0.00	5.00	1.00	0.00
......................................TTTTGATTGTTGCTTAGAAAGC..............................................................................	22	1	5.00	0.00	5.00	0.00	0.00
......................................GTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	5.00	0.00	4.00	1.00	0.00
......................................TTTTGATTGTTTCTCATAAAGCC.............................................................................	23	1	5.00	0.00	4.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGCAAGTC.............................................................................	23	1	5.00	0.00	5.00	0.00	0.00
......................................TTTTGGTTGTTGCTCAGAAAGC..............................................................................	22	1	5.00	0.00	4.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	5.00	0.00	5.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAATGCC.............................................................................	23	1	5.00	0.00	5.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAACGC..............................................................................	22	1	5.00	0.00	4.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	5.00	0.00	4.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGG..............................................................................	22	1	5.00	0.00	5.00	0.00	0.00
......................................TTTTCATTGTTGCTCAGAAAGCC.............................................................................	23	1	4.00	0.00	4.00	0.00	0.00
......................................TTTTGATTGGTGCTCAGAAAGC..............................................................................	22	1	4.00	0.00	4.00	0.00	0.00
......................................................................................CTTTCGAGCAATTATCAAAGC...............................	21	1	4.00	0.00	2.00	2.00	0.00
......................................TTTTGATTGTCGCTCAGAAAGC..............................................................................	22	1	4.00	0.00	2.00	2.00	0.00
......................................TTTTGATGGTTGCTCAGAAAGCC.............................................................................	23	1	4.00	0.00	2.00	2.00	0.00
......................................TTGTGATTGTTGCTCAGAAAGC..............................................................................	22	1	4.00	0.00	3.00	1.00	0.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	4.00	0.00	4.00	0.00	0.00
......................................TTTTGATTGTTGTTCAGAAAGTC.............................................................................	23	1	4.00	0.00	4.00	0.00	0.00
......................................TTTTGATTGTTGCTGAGAAAGCC.............................................................................	23	1	4.00	0.00	4.00	0.00	0.00
.....................................TTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	4.00	0.00	4.00	0.00	0.00
......................................TTTGGATTGTTGCTCAGAAAGC..............................................................................	22	1	4.00	0.00	3.00	1.00	0.00
......................................TTCTGATTGTTGCTCAGAAAGC..............................................................................	22	1	4.00	0.00	4.00	0.00	0.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	4.00	0.00	3.00	1.00	0.00
......................................TTTTGATTGTTGCTCTGAAAGC..............................................................................	22	1	4.00	0.00	3.00	1.00	0.00
......................................TTTTGATTGTTGCTCAGAAATCT.............................................................................	23	1	4.00	0.00	4.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGTAAGC..............................................................................	22	1	4.00	0.00	4.00	0.00	0.00
......................................CTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	3.00	0.00	1.00	2.00	0.00
......................................TTTGGTTTGTTGCTCAGAAAGCC.............................................................................	23	1	3.00	0.00	2.00	1.00	0.00
......................................TTTTGATTGTCGCTCAGAAAG...............................................................................	21	1	3.00	0.00	2.00	1.00	0.00
...........................CATTTATGTATTTTTGATT............................................................................................	19	1	3.00	0.00	3.00	0.00	0.00

droPer1

A---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTA-----ACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT-------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	43768.00	53.00	1437.00	1830.00	1836.00	38612.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	6151.00	19.00	436.00	664.00	507.00	4525.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	1569.00	20.00	51.00	427.00	410.00	661.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	1055.00	3.00	10.00	42.00	55.00	945.00
.....................................TTTTTGATTGTTGCTCAGAAAGC..............................................................................	23	1	169.00	0.00	4.00	3.00	0.00	162.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	168.00	0.00	4.00	1.00	2.00	161.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	163.00	0.00	2.00	2.00	4.00	155.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	131.00	0.00	2.00	45.00	36.00	48.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	119.00	0.00	2.00	1.00	4.00	112.00
......................................TTTTGATTGTTGGTCAGAAAGCC.............................................................................	23	1	109.00	0.00	1.00	1.00	2.00	105.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	103.00	1.00	5.00	31.00	32.00	34.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	98.00	0.00	5.00	3.00	12.00	78.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	97.00	0.00	1.00	4.00	7.00	85.00
......................................TTTTGATTGTTxCTCAGAAAGCC.............................................................................	22	1	92.00	0.00	0.00	0.00	0.00	92.00
.....................................TTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	82.00	0.00	0.00	0.00	2.00	80.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	78.00	0.00	5.00	16.00	15.00	42.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	68.00	0.00	7.00	20.00	27.00	14.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	68.00	0.00	1.00	21.00	34.00	12.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	66.00	0.00	2.00	17.00	28.00	19.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	65.00	0.00	3.00	5.00	11.00	46.00
......................................TTTTGATTGTTGCTCAxAAAGCC.............................................................................	22	1	65.00	0.00	0.00	0.00	0.00	65.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	62.00	0.00	1.00	3.00	3.00	55.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	58.00	0.00	0.00	0.00	2.00	56.00
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	1	58.00	0.00	3.00	2.00	15.00	38.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	52.00	1.00	1.00	3.00	0.00	47.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	51.00	0.00	2.00	3.00	4.00	42.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	47.00	0.00	0.00	8.00	25.00	14.00
......................................TTTTGATTGTTGCTCAxAAAGC..............................................................................	21	1	41.00	0.00	0.00	0.00	0.00	41.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	36.00	0.00	2.00	20.00	13.00	1.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	35.00	0.00	1.00	3.00	11.00	20.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	33.00	0.00	2.00	6.00	12.00	13.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	31.00	0.00	2.00	3.00	1.00	25.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	30.00	0.00	5.00	2.00	3.00	20.00
......................................................................................CTTTCGAGCAATTATCAAAGCC..............................	22	1	29.00	0.00	9.00	8.00	6.00	6.00
......................................TTTTGATTGTTGCTCAGAAAGCCG............................................................................	24	1	26.00	0.00	0.00	0.00	1.00	25.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	25.00	0.00	1.00	1.00	2.00	21.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	25.00	0.00	1.00	14.00	6.00	4.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	24.00	0.00	4.00	1.00	4.00	15.00
......................................TTTTGATTGTTGCTCAAAAAGC..............................................................................	22	1	23.00	0.00	0.00	3.00	4.00	16.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	23.00	0.00	1.00	4.00	6.00	12.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	22.00	0.00	5.00	2.00	3.00	12.00
......................................TTTTGATTGTTGATCAGAAAGC..............................................................................	22	1	19.00	0.00	1.00	2.00	6.00	10.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	19.00	0.00	2.00	0.00	0.00	17.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	18.00	0.00	2.00	0.00	0.00	16.00
......................................TTTTCATTGTTGCTCAGAAAGCC.............................................................................	23	1	17.00	0.00	0.00	0.00	1.00	16.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	17.00	0.00	4.00	4.00	2.00	7.00
......................................TTTGGATTGTTGCTCAGAAAGCC.............................................................................	23	1	17.00	0.00	1.00	3.00	12.00	1.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	16.00	0.00	5.00	0.00	8.00	3.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	16.00	0.00	0.00	2.00	1.00	13.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	16.00	0.00	5.00	1.00	3.00	7.00
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	1	15.00	0.00	0.00	0.00	0.00	15.00
......................................TTTTGATTGATGCTCAGAAAGCC.............................................................................	23	1	15.00	0.00	1.00	1.00	3.00	10.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	15.00	0.00	0.00	3.00	6.00	6.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	14.00	0.00	1.00	1.00	2.00	10.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	14.00	0.00	2.00	1.00	0.00	11.00
.....................................CTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	13.00	0.00	2.00	0.00	1.00	10.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	13.00	0.00	1.00	1.00	0.00	11.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	13.00	0.00	0.00	1.00	0.00	12.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	12.00	0.00	0.00	2.00	4.00	6.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	1	12.00	0.00	0.00	1.00	10.00	1.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	12.00	0.00	1.00	0.00	3.00	8.00
.........................................TGATTGTTGCTCAGAAAGCC.............................................................................	20	1	12.00	0.00	0.00	0.00	0.00	12.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	11.00	0.00	0.00	0.00	3.00	8.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	1.00	3.00	0.00	7.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	11.00	0.00	1.00	4.00	2.00	4.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	11.00	1.00	0.00	0.00	6.00	4.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	11.00	0.00	3.00	3.00	2.00	3.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	11.00	0.00	4.00	0.00	7.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	11.00	0.00	3.00	1.00	3.00	4.00
......................................TTTTGATTGTTGGTCAGAAAGC..............................................................................	22	1	11.00	0.00	0.00	0.00	0.00	11.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	10.00	0.00	0.00	2.00	1.00	7.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	10.00	0.00	6.00	1.00	3.00	0.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	0.00	2.00	0.00	8.00
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	0.00	5.00	2.00	3.00
......................................ATTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	9.00	0.00	0.00	1.00	1.00	7.00
.....................................TTTTTGATTGTTGCTCAGAAAG...............................................................................	22	1	9.00	0.00	0.00	1.00	0.00	8.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	9.00	0.00	2.00	1.00	1.00	5.00
......................................TTGTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	3.00	1.00	4.00	0.00
......................................TTTTGATTGTTGCTCAAAAG................................................................................	20	1	8.00	0.00	0.00	0.00	0.00	8.00
......................................TTTTGACTGTTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	0.00	1.00	2.00	5.00
......................................TTTTGATTCTTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	0.00	1.00	3.00	4.00
......................................TTTTGATTGTTGCTCAGAAAAC..............................................................................	22	1	7.00	0.00	0.00	3.00	1.00	3.00
......................................TTTTGATTGTTGCTCAGTAAGCC.............................................................................	23	1	7.00	0.00	1.00	0.00	5.00	1.00
......................................TTTTGATTGGTGCTCAGAAAGC..............................................................................	22	1	7.00	0.00	0.00	0.00	2.00	5.00
......................................TGTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	7.00	0.00	1.00	0.00	4.00	2.00
......................................TTTTGGTTGTTGCTCAGAAAGC..............................................................................	22	1	7.00	0.00	1.00	2.00	0.00	4.00
......................................TTTTGATTGCTGCTCAGAAAG...............................................................................	21	1	7.00	0.00	0.00	3.00	4.00	0.00
.......................................TTTTATTGTTGCTCAGAAAGCC.............................................................................	22	1	7.00	0.00	0.00	0.00	0.00	7.00
......................................TTTTGATTGTTGCTCTGAAAGCC.............................................................................	23	1	7.00	0.00	0.00	1.00	5.00	1.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	1	7.00	0.00	0.00	3.00	0.00	4.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	6.00	1.00	0.00	3.00	1.00	1.00
......................................GTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	6.00	0.00	1.00	0.00	1.00	4.00
.......................................TTTGATTGTTGCTCAGAAAG...............................................................................	20	1	6.00	0.00	0.00	3.00	1.00	2.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	6.00	0.00	0.00	0.00	1.00	5.00
......................................TTTTGATTGTTGCTCAGAATGCC.............................................................................	23	1	6.00	0.00	0.00	0.00	3.00	3.00
......................................TTTTGATTGTTGCTCAGAAGCC..............................................................................	22	1	6.00	0.00	0.00	0.00	2.00	4.00
......................................TTTTGAGTGTTGCTCAGAAAGCC.............................................................................	23	1	6.00	0.00	1.00	0.00	3.00	2.00
......................................TTTTGATTGTTGCTCAGAAACC..............................................................................	22	1	6.00	0.00	0.00	3.00	3.00	0.00
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	1	5.00	0.00	1.00	0.00	1.00	3.00
......................................TTTTGATTGxTCCTCAGAAAGCC.............................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
......................................TTTTGATTGTTGCTCAGAAAC...............................................................................	21	1	5.00	0.00	0.00	2.00	3.00	0.00

droWil1

GGTTTGCTTATTTGCCCA---TCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTT-----ATCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACA---------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	312474.00	140.00	56517.00	30382.00	225435.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	56003.00	26.00	13896.00	13143.00	28938.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	15664.00	23.00	2588.00	4346.00	8707.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	9776.00	3.00	595.00	769.00	8409.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	4084.00	0.00	400.00	232.00	3452.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	1772.00	0.00	110.00	367.00	1295.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	1281.00	0.00	83.00	129.00	1069.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	1077.00	0.00	8.00	44.00	1025.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	801.00	2.00	186.00	301.00	312.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	728.00	0.00	80.00	118.00	530.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	720.00	0.00	98.00	89.00	533.00
......................................TTTTGATTGTTGGTCAGAAAGCC.............................................................................	23	1	684.00	0.00	10.00	1.00	673.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	677.00	0.00	115.00	37.00	525.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	588.00	0.00	140.00	124.00	324.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	583.00	0.00	93.00	141.00	349.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	520.00	0.00	19.00	83.00	418.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	515.00	0.00	54.00	55.00	406.00
......................................TTTTGATTGTTGCTCAxAAAGCC.............................................................................	22	1	504.00	0.00	34.00	15.00	455.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	479.00	0.00	63.00	75.00	341.00
......................................TTTTGATTGTTxCTCAGAAAGCC.............................................................................	22	1	454.00	0.00	31.00	14.00	409.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	445.00	1.00	67.00	52.00	325.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	380.00	0.00	50.00	41.00	289.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	377.00	0.00	75.00	63.00	239.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	353.00	0.00	49.00	206.00	98.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	335.00	1.00	84.00	86.00	164.00
......................................................................................CTTTCGAGCAATAATTGAAACC..............................	22	1	305.00	1.00	139.00	37.00	128.00
......................................TTTTGATTGTTGCTCAxAAAGC..............................................................................	21	1	301.00	0.00	18.00	15.00	268.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	227.00	0.00	56.00	86.00	85.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	225.00	0.00	40.00	70.00	115.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	225.00	0.00	84.00	121.00	20.00
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	1	216.00	0.00	99.00	30.00	87.00
......................................TTTTGATTGTTGCTCAGAAAGCCG............................................................................	24	1	215.00	0.00	2.00	2.00	211.00
......................................TTTTGATTGTTGCTCAGAAAA...............................................................................	21	1	215.00	0.00	2.00	17.00	196.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	197.00	0.00	63.00	33.00	101.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	197.00	0.00	68.00	66.00	63.00
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	1	193.00	0.00	5.00	5.00	183.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	188.00	0.00	81.00	17.00	90.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	185.00	1.00	96.00	58.00	30.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	178.00	0.00	63.00	40.00	75.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	176.00	0.00	50.00	24.00	102.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	173.00	0.00	53.00	35.00	85.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	171.00	0.00	58.00	14.00	99.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	164.00	0.00	103.00	13.00	48.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	159.00	0.00	59.00	41.00	59.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	159.00	0.00	48.00	24.00	87.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	155.00	0.00	43.00	31.00	81.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	154.00	0.00	20.00	24.00	110.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	150.00	0.00	49.00	41.00	60.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	149.00	0.00	48.00	53.00	48.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	148.00	0.00	32.00	36.00	80.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	147.00	0.00	42.00	37.00	68.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	140.00	0.00	34.00	25.00	81.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	139.00	0.00	28.00	70.00	41.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	132.00	0.00	43.00	42.00	47.00
......................................TTTTGATTGTTGATCAGAAAGC..............................................................................	22	1	131.00	0.00	23.00	41.00	67.00
......................................TTTTGATTGTTGCTCAAAAAGC..............................................................................	22	1	116.00	0.00	24.00	26.00	66.00
......................................TTTTGATTGTTGCTCAGAAGCC..............................................................................	22	1	113.00	0.00	37.00	28.00	48.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	110.00	0.00	26.00	41.00	43.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	109.00	0.00	29.00	55.00	25.00
.......................................TTTTATTGTTGCTCAGAAAGCC.............................................................................	22	1	109.00	0.00	28.00	12.00	69.00
......................................TTTTGATTGATGCTCAGAAAGCC.............................................................................	23	1	105.00	0.00	12.00	34.00	59.00
......................................TTTTCATTGTTGCTCAGAAAGCC.............................................................................	23	1	101.00	0.00	33.00	15.00	53.00
......................................TTTTGACTGTTGCTCAGAAAGCC.............................................................................	23	1	96.00	0.00	35.00	17.00	44.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	91.00	0.00	35.00	19.00	37.00
......................................TTTTGATTGTTGCTCAGG..................................................................................	18	1	91.00	0.00	0.00	0.00	91.00
......................................ATTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	89.00	0.00	6.00	63.00	20.00
......................................TTTTGATTGTTGGTCAGAAAGC..............................................................................	22	1	84.00	0.00	2.00	0.00	82.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	77.00	0.00	24.00	18.00	35.00
......................................TTTTGATTCTTGCTCAGAAAGCC.............................................................................	23	1	77.00	0.00	34.00	23.00	20.00
......................................TTTTGATTGTTGCTAAGAAAGC..............................................................................	22	1	74.00	0.00	29.00	42.00	3.00
.....................................CTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	72.00	0.00	14.00	6.00	52.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	65.00	0.00	8.00	14.00	43.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	64.00	0.00	11.00	19.00	34.00
......................................TTTTGATTGTTGCCCAGAAAGC..............................................................................	22	1	64.00	0.00	17.00	20.00	27.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	58.00	0.00	21.00	25.00	12.00
......................................TTTTGATTGTTGCACAGAAAGCC.............................................................................	23	1	57.00	0.00	13.00	23.00	21.00
......................................TTTTGATTGTTGCTCAGAAAAC..............................................................................	22	1	55.00	0.00	12.00	32.00	11.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	55.00	0.00	16.00	27.00	12.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	54.00	0.00	17.00	5.00	32.00
......................................TTTTGATTGTTGCTCAGAAACC..............................................................................	22	1	54.00	0.00	30.00	23.00	1.00
......................................TCTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	53.00	0.00	16.00	25.00	12.00
......................................TTTTGATxxTTGCTCAGAAAGC..............................................................................	20	1	53.00	0.00	17.00	26.00	10.00
......................................TTTTGATTGTTGCTCAAAAG................................................................................	20	1	50.00	1.00	3.00	14.00	32.00
......................................TTTTGATTGTTACTCAGAAAGC..............................................................................	22	1	49.00	0.00	11.00	28.00	10.00
......................................GTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	49.00	0.00	8.00	32.00	9.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	48.00	0.00	12.00	16.00	20.00
......................................TTTTGATTGTTCCTCAGAAAGC..............................................................................	22	1	48.00	0.00	15.00	18.00	15.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	48.00	0.00	18.00	26.00	4.00
........................................TTGATTGTTGCTCAGAAAGC..............................................................................	20	1	47.00	0.00	8.00	26.00	13.00
......................................CTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	46.00	0.00	3.00	32.00	11.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	45.00	0.00	19.00	26.00	0.00
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	1	45.00	0.00	18.00	23.00	4.00
......................................TTTTGATTATTGCTCAGAAAGC..............................................................................	22	1	45.00	0.00	21.00	21.00	3.00
......................................TTTTGATTGTTGCTCGGAAAGC..............................................................................	22	1	45.00	0.00	10.00	20.00	15.00
......................................TTTCGATTGTTGCTCAGAAAGC..............................................................................	22	1	44.00	0.00	20.00	15.00	9.00
......................................TTCTGATTGTTGCTCAGAAAGC..............................................................................	22	1	43.00	0.00	17.00	22.00	4.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	1	43.00	0.00	30.00	12.00	1.00
.........................................TGATTGTTGCTCAGAAAGCC.............................................................................	20	1	43.00	0.00	1.00	10.00	32.00
......................................TTTTGATTGTCGCTCAGAAAGC..............................................................................	22	1	42.00	0.00	12.00	20.00	10.00
.......................................TTTGATTGTTGCTCAGAAAG...............................................................................	20	1	42.00	1.00	5.00	32.00	4.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	1	40.00	0.00	6.00	5.00	29.00

droVir3

CATTTCCTTCCTACCTCACAAAACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA-TTC-----AATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGTTT------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	25905.00	22.00	1915.00	3095.00	319.00	20554.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	4567.00	5.00	682.00	742.00	44.00	3094.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	1580.00	0.00	40.00	88.00	10.00	1442.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	1327.00	3.00	499.00	82.00	18.00	725.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	274.00	0.00	98.00	4.00	2.00	170.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	191.00	0.00	5.00	1.00	4.00	181.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	190.00	0.00	17.00	135.00	1.00	37.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	177.00	0.00	1.00	2.00	1.00	173.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	155.00	0.00	3.00	5.00	0.00	147.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	131.00	0.00	19.00	106.00	0.00	6.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	121.00	0.00	45.00	2.00	1.00	73.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	119.00	0.00	17.00	3.00	1.00	98.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	92.00	0.00	15.00	28.00	0.00	49.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	77.00	0.00	24.00	12.00	0.00	41.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	76.00	0.00	15.00	59.00	0.00	2.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	55.00	0.00	4.00	15.00	0.00	36.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	55.00	0.00	3.00	4.00	1.00	47.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	44.00	0.00	30.00	0.00	1.00	13.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	42.00	0.00	4.00	1.00	3.00	34.00
......................................TTTTGATTGTTGCTCAGAAAGCCG............................................................................	24	1	39.00	0.00	1.00	1.00	0.00	37.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	38.00	0.00	4.00	4.00	2.00	28.00
......................................TTTTGATTGTTGCTCAGAAAA...............................................................................	21	1	38.00	0.00	1.00	0.00	0.00	37.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	36.00	0.00	5.00	29.00	0.00	2.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	35.00	0.00	5.00	6.00	0.00	24.00
......................................TTTTGATTGTTGCTCAGG..................................................................................	18	1	34.00	0.00	0.00	0.00	0.00	34.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	33.00	0.00	9.00	7.00	0.00	17.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	32.00	0.00	6.00	12.00	0.00	14.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	32.00	0.00	2.00	8.00	0.00	22.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	30.00	0.00	0.00	5.00	0.00	25.00
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	1	30.00	0.00	9.00	5.00	0.00	16.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	26.00	0.00	3.00	10.00	0.00	13.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	23.00	0.00	0.00	5.00	0.00	18.00
......................................TTTTGATTGTTTCTCATAAAGCC.............................................................................	23	1	22.00	0.00	4.00	18.00	0.00	0.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	21.00	0.00	2.00	5.00	0.00	14.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	20.00	0.00	0.00	16.00	0.00	4.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	20.00	0.00	1.00	3.00	0.00	16.00
......................................TTTTGATTGTTGCTCATAAATCC.............................................................................	23	1	20.00	0.00	4.00	16.00	0.00	0.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	19.00	0.00	4.00	11.00	0.00	4.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	18.00	0.00	10.00	6.00	0.00	2.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	18.00	0.00	2.00	13.00	0.00	3.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	18.00	0.00	1.00	4.00	0.00	13.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	17.00	0.00	1.00	12.00	0.00	4.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	17.00	0.00	2.00	15.00	0.00	0.00
......................................TTTTGATTGTTGCTCAxAAAGCC.............................................................................	22	1	17.00	0.00	0.00	0.00	0.00	17.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	16.00	0.00	1.00	6.00	0.00	9.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	1	16.00	0.00	4.00	12.00	0.00	0.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	15.00	0.00	0.00	11.00	0.00	4.00
......................................TTTTGATTGTTxCTCAGAAAGCC.............................................................................	22	1	15.00	0.00	0.00	0.00	0.00	15.00
......................................TGTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	14.00	0.00	6.00	6.00	0.00	2.00
......................................TTTTGATTGTTTCTCAGAAATCC.............................................................................	23	1	14.00	0.00	2.00	12.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	13.00	1.00	6.00	3.00	0.00	3.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	13.00	0.00	4.00	5.00	0.00	4.00
......................................TTGTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	12.00	0.00	7.00	5.00	0.00	0.00
......................................TTTTGATTGTTGCTCAxAAAGC..............................................................................	21	1	12.00	0.00	0.00	0.00	2.00	10.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	12.00	0.00	6.00	0.00	0.00	6.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	0.00	7.00	0.00	4.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	0.00	6.00	0.00	5.00
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	5.00	3.00	0.00	3.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	11.00	0.00	2.00	8.00	0.00	1.00
......................................TTTTGATTGTTGCTCATAAAG...............................................................................	21	1	11.00	0.00	7.00	4.00	0.00	0.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	0.00	3.00	0.00	7.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	10.00	0.00	2.00	2.00	0.00	6.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	1.00	7.00	0.00	2.00
......................................TTTTGATTGATGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	2.00	1.00	1.00	6.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	10.00	0.00	1.00	3.00	0.00	6.00
......................................TTTTGATTGTTGCTCAGTAAGCC.............................................................................	23	1	10.00	0.00	3.00	3.00	0.00	4.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	10.00	0.00	5.00	3.00	0.00	2.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	2.00	2.00	0.00	6.00
......................................TTTTGAGTGTTGCTCAGAAAGCC.............................................................................	23	1	9.00	0.00	5.00	4.00	0.00	0.00
......................................TTTTGATTGTTGCCCAGAAAGC..............................................................................	22	1	9.00	0.00	4.00	1.00	0.00	4.00
......................................TTTTGATxxTTGCTCAGAAAGCC.............................................................................	21	1	9.00	0.00	0.00	0.00	1.00	8.00
......................................TTTTGATTGTTGCTCTGAAAGCC.............................................................................	23	1	9.00	0.00	3.00	5.00	0.00	1.00
......................................TTTTGATTGTTGGTCAGAAAGCC.............................................................................	23	1	9.00	0.00	0.00	3.00	0.00	6.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	9.00	0.00	3.00	3.00	0.00	3.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	8.00	0.00	0.00	1.00	1.00	6.00
.....................................CTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	8.00	0.00	1.00	2.00	1.00	4.00
......................................TTTTGGTTGTTGCTCAGAAAGC..............................................................................	22	1	8.00	1.00	4.00	2.00	0.00	1.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	8.00	0.00	2.00	3.00	0.00	3.00
......................................TTTTGATTGTTGCTCAGAACGC..............................................................................	22	1	8.00	0.00	0.00	5.00	0.00	3.00
......................................TTTTGATTCTTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	2.00	3.00	0.00	3.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	7.00	0.00	1.00	1.00	0.00	5.00
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	1	7.00	0.00	4.00	1.00	0.00	2.00
......................................TTTTGATTGTTGCTCAGT..................................................................................	18	1	7.00	0.00	0.00	0.00	0.00	7.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	7.00	0.00	1.00	4.00	0.00	2.00
......................................TTTTGATTGTTGCTCAGCAAGC..............................................................................	22	1	7.00	0.00	1.00	6.00	0.00	0.00
......................................GTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	7.00	0.00	0.00	5.00	1.00	1.00
......................................TTTTGATTGTTGCTCAGAAACC..............................................................................	22	1	7.00	0.00	4.00	2.00	0.00	1.00
......................................TTTTGATTGTTGCTCAGAACG...............................................................................	21	1	7.00	0.00	4.00	2.00	0.00	1.00
......................................TTTGGATTGTTGCTCAGAAAGCC.............................................................................	23	1	7.00	0.00	3.00	3.00	0.00	1.00
......................................TTTTGATTGTTGCTCAGACAG...............................................................................	21	1	6.00	0.00	1.00	0.00	0.00	5.00
......................................TTTTGATTGTTTCTCAGAAAGCCT............................................................................	24	1	6.00	0.00	0.00	6.00	0.00	0.00
......................................TTTTGATTTTTGCTCAGAAAGC..............................................................................	22	1	6.00	0.00	0.00	6.00	0.00	0.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	6.00	0.00	0.00	1.00	0.00	5.00
......................................TTTTGATTGTTGCTCAGAAAGCG.............................................................................	23	1	6.00	0.00	2.00	1.00	0.00	3.00
......................................TTTTGATTGTTTCTCAGAAAG...............................................................................	21	1	6.00	0.00	1.00	5.00	0.00	0.00
......................................TTTTGATTGTTGCTTAGAAAGC..............................................................................	22	1	6.00	0.00	1.00	3.00	0.00	2.00
......................................TTTTGATTGTTGCTCAGAAAAC..............................................................................	22	1	6.00	0.00	3.00	2.00	0.00	1.00
......................................TTTTGATTGTTGCTCAGGAAG...............................................................................	21	1	5.00	0.00	2.00	2.00	0.00	1.00
......................................TTTTGATTGTTGCCCAGAAAG...............................................................................	21	1	5.00	0.00	1.00	1.00	0.00	3.00
......................................TTTTGATTGTTGCTCAGAAAT...............................................................................	21	1	5.00	0.00	2.00	3.00	0.00	0.00
......................................TTTTGATTGTTGCTCAGAAGCC..............................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00

droMoj3

----------------------ACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAAT---TTAACTTA--ACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCA-	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	16379.00	200.00	3434.00	1495.00	11250.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	3586.00	70.00	724.00	294.00	2498.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	1378.00	38.00	755.00	354.00	231.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	310.00	11.00	63.00	35.00	201.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	183.00	6.00	109.00	60.00	8.00
......................................TTTTGATTGTTTCTCAGAAAGCC.............................................................................	23	1	115.00	0.00	18.00	62.00	35.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	92.00	9.00	37.00	13.00	33.00
......................................TTTTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	91.00	0.00	3.00	12.00	76.00
......................................TTTTGATTGTTGCTCAGAAAGCCA............................................................................	24	1	84.00	3.00	23.00	11.00	47.00
......................................TTTTGATTGTTGCTCAGA..................................................................................	18	1	74.00	0.00	38.00	33.00	3.00
......................................TTTTGATTGTTGCTCAGAAAGCA.............................................................................	23	1	71.00	1.00	31.00	9.00	30.00
......................................TTTTGATTGTTGCTCAGAA.................................................................................	19	1	71.00	1.00	47.00	20.00	3.00
......................................TTTTGATTGTTGCTCATAAAGCC.............................................................................	23	1	65.00	0.00	13.00	19.00	33.00
......................................TTTTGATTGTTGCTCCGAAAGCC.............................................................................	23	1	55.00	0.00	10.00	15.00	30.00
......................................TTTTGATTGTTGCTCAGAAAGCCC............................................................................	24	1	52.00	0.00	8.00	4.00	40.00
......................................TTTTGATTGTTGCTCAGAAATCC.............................................................................	23	1	50.00	0.00	15.00	20.00	15.00
......................................TTTTGATTGTTGCTCAGAACGCC.............................................................................	23	1	46.00	0.00	7.00	12.00	27.00
......................................TTTTGATTGTTGCTCAGACAGCC.............................................................................	23	1	44.00	0.00	2.00	12.00	30.00
......................................TTTTGATTGTTGCTCAGAAAGT..............................................................................	22	1	39.00	1.00	22.00	8.00	8.00
......................................TTTTGATTGTTGCTCAGAAAGTC.............................................................................	23	1	39.00	0.00	7.00	2.00	30.00
......................................TTTTGATTGTTGCTCAGAAAGA..............................................................................	22	1	38.00	3.00	22.00	9.00	4.00
......................................TTTTGATTGCTGCTCAGAAAGCC.............................................................................	23	1	37.00	0.00	9.00	5.00	23.00
.......................................TTTGATTGTTGCTCAGAAAGCC.............................................................................	22	1	36.00	2.00	8.00	3.00	23.00
......................................TTTTGATTGTTGTTCAGAAAGCC.............................................................................	23	1	35.00	0.00	10.00	1.00	24.00
......................................TTTTGATTGTTGCCCAGAAAGCC.............................................................................	23	1	33.00	0.00	10.00	4.00	19.00
......................................TTTTGATTGTTGCTCAGAAAGAC.............................................................................	23	1	32.00	0.00	3.00	4.00	25.00
......................................TTTTGATTGTTGCTCAGGAAGCC.............................................................................	23	1	31.00	0.00	5.00	3.00	23.00
......................................TTTTGATTGTTGCTCACAAAGCC.............................................................................	23	1	30.00	0.00	14.00	4.00	12.00
......................................TTGTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	29.00	0.00	10.00	3.00	16.00
......................................CTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	27.00	0.00	7.00	5.00	15.00
......................................TTTTGATTGTTGCTCAGAAGGCC.............................................................................	23	1	26.00	0.00	5.00	3.00	18.00
......................................TTTTGATTGTTGCTCTGAAAGCC.............................................................................	23	1	25.00	0.00	3.00	4.00	18.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	25.00	0.00	3.00	1.00	21.00
......................................TTTTGATTGTTGATCAGAAAGCC.............................................................................	23	1	25.00	0.00	3.00	5.00	17.00
......................................TTTTGGTTGTTGCTCAGAAAGCC.............................................................................	23	1	24.00	1.00	7.00	4.00	12.00
......................................TTTTGATTGGTGCTCAGAAAGCC.............................................................................	23	1	23.00	0.00	7.00	4.00	12.00
......................................TCTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	23.00	0.00	5.00	3.00	15.00
......................................TTTTGATTGTTTCTCAGAAAGC..............................................................................	22	1	22.00	0.00	6.00	9.00	7.00
......................................TTTTGATTGTTGCTCAGCAAGC..............................................................................	22	1	21.00	0.00	0.00	3.00	18.00
......................................TTCTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	20.00	0.00	4.00	1.00	15.00
......................................TGTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	19.00	0.00	6.00	2.00	11.00
......................................TTTGGATTGTTGCTCAGAAAGCC.............................................................................	23	1	18.00	0.00	6.00	3.00	9.00
......................................TTTTGCTTGTTGCTCAGAAAGCC.............................................................................	23	1	18.00	0.00	6.00	4.00	8.00
......................................TTTCGATTGTTGCTCAGAAAGCC.............................................................................	23	1	17.00	0.00	1.00	7.00	9.00
......................................TTTTGATTGTTGCTCAGAAAGGC.............................................................................	23	1	17.00	0.00	0.00	0.00	17.00
......................................TTTTGATTGTTCCTCAGAAAGCC.............................................................................	23	1	17.00	1.00	5.00	5.00	6.00
......................................TTTTGATTGTTGCTCAGAAAACC.............................................................................	23	1	16.00	0.00	1.00	1.00	14.00
......................................TTTTGATTGTTACTCAGAAAGCC.............................................................................	23	1	16.00	0.00	1.00	1.00	14.00
......................................TTTTGATTGTTGCTAAGAAAGCC.............................................................................	23	1	15.00	0.00	8.00	2.00	5.00
......................................TTTTAATTGTTGCTCAGAAAGCC.............................................................................	23	1	15.00	0.00	1.00	1.00	13.00
......................................TTTTGATTGTTGCTCAGAACGC..............................................................................	22	1	15.00	0.00	1.00	6.00	8.00
......................................TTTTGATTGTTTCTCATAAAGCC.............................................................................	23	1	14.00	0.00	2.00	8.00	4.00
......................................TTTTGATTGTTGCTCAGAAACCC.............................................................................	23	1	13.00	0.00	4.00	1.00	8.00
......................................TTTTGATTGTTGCTCAGAACG...............................................................................	21	1	13.00	0.00	4.00	8.00	1.00
......................................TTTTGATTATTGCTCAGAAAGCC.............................................................................	23	1	13.00	0.00	3.00	1.00	9.00
......................................TTTTGATTGTTGCTCAGTAAGCC.............................................................................	23	1	12.00	0.00	3.00	1.00	8.00
......................................TTTTGATTGTTGCTCAGCAAG...............................................................................	21	1	12.00	0.00	1.00	9.00	2.00
......................................TTTTGATCGTTGCTCAGAAAGCC.............................................................................	23	1	12.00	0.00	4.00	0.00	8.00
......................................TTTTGATTGTTGCTCATAAAG...............................................................................	21	1	12.00	0.00	4.00	8.00	0.00
......................................TTTTGATTGTTGCTCAAAAAGCC.............................................................................	23	1	12.00	0.00	3.00	0.00	9.00
......................................TTTTGATTGTTGCTCGGAAAGCC.............................................................................	23	1	11.00	0.00	3.00	0.00	8.00
......................................TTTTGAGTGTTGCTCAGAAAGCC.............................................................................	23	1	11.00	0.00	3.00	1.00	7.00
......................................TTTTGATTGTTGCTTAGAAAGCC.............................................................................	23	1	11.00	0.00	1.00	1.00	9.00
.....................................ATTTTGATTGTTGCTCAGAAAGC..............................................................................	23	1	10.00	0.00	4.00	2.00	4.00
......................................TTTTGATTGTCGCTCAGAAAGCC.............................................................................	23	1	10.00	0.00	4.00	0.00	6.00
......................................TTTTGATTGTTGCTCAGGAAGC..............................................................................	22	1	10.00	0.00	3.00	2.00	5.00
......................................TTTTGATTGTTGCTCAGAGAGC..............................................................................	22	1	9.00	0.00	2.00	0.00	7.00
......................................TTTTGATTGTTTCTCAGAAAG...............................................................................	21	1	9.00	0.00	2.00	7.00	0.00
......................................TTTTGATTGGTGCTCAGAAAG...............................................................................	21	1	9.00	0.00	5.00	1.00	3.00
......................................TTTTGATTGTTGCTCGGAAAGC..............................................................................	22	1	9.00	0.00	3.00	0.00	6.00
......................................TTTTGATTGTTGCTCCGAAAGC..............................................................................	22	1	9.00	0.00	1.00	5.00	3.00
......................................TTTTGATTGTTGCTCATAAAGC..............................................................................	22	1	9.00	0.00	5.00	4.00	0.00
......................................TTTTGATTGTTGCTCAGAAATC..............................................................................	22	1	9.00	0.00	5.00	1.00	3.00
......................................TTTTGATTTTTGCTCAGAAAGCC.............................................................................	23	1	8.00	0.00	1.00	5.00	2.00
......................................TTTTGATTGTTGCTCAGAAGGC..............................................................................	22	1	8.00	1.00	5.00	1.00	1.00
......................................TTTTGATTGTTTCTCAGCAAGCC.............................................................................	23	1	8.00	0.00	3.00	2.00	3.00
......................................TTTTGATTGCTGCTCAGAAAGC..............................................................................	22	1	8.00	0.00	2.00	2.00	4.00
......................................CTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	7.00	0.00	1.00	1.00	5.00
......................................TTTTGATTGGTGCTCAGAAAGC..............................................................................	22	1	7.00	0.00	1.00	2.00	4.00
......................................TTTTGATTGTTGCGCAGAAAGCC.............................................................................	23	1	7.00	0.00	2.00	1.00	4.00
......................................TTTTGATTGTTGCTCATCAAGCC.............................................................................	23	1	7.00	0.00	0.00	0.00	7.00
......................................TTTTGACTGTTGCTCAGAAAGCC.............................................................................	23	1	7.00	0.00	2.00	0.00	5.00
.......................................TTTGATTGTTGCTCAGAAAGC..............................................................................	21	1	7.00	0.00	1.00	0.00	6.00
......................................TTTTGATTGTTTCTCAGAAATCC.............................................................................	23	1	7.00	0.00	3.00	3.00	1.00
........................................TTGATTGTTGCTCAGAAAGCC.............................................................................	21	1	7.00	0.00	2.00	0.00	5.00
......................................TTTTGATTGTTGCTCAGAAAGG..............................................................................	22	1	7.00	0.00	0.00	0.00	7.00
......................................TTTTGATTGTTGCTCAGACAGC..............................................................................	22	1	7.00	0.00	2.00	2.00	3.00
......................................TTTGGATTGTTGCTCAGAAAGC..............................................................................	22	1	6.00	0.00	3.00	1.00	2.00
......................................TTTTGATTGTTGGTCAGAAAGCC.............................................................................	23	1	6.00	0.00	3.00	0.00	3.00
......................................TTTTGTTTGTTGCTCAGAAAGCC.............................................................................	23	1	6.00	0.00	1.00	0.00	5.00
.......................................TTTGATTGTTGCTCAGAAAGCCC............................................................................	23	1	6.00	0.00	1.00	1.00	4.00
......................................TGGTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	6.00	0.00	3.00	1.00	2.00
.....................................CTTTTGATTGTTGCTCAGAAAGCC.............................................................................	24	1	6.00	0.00	1.00	0.00	5.00
......................................TTTTGATTGTTGCTCAGAAAGCCTT...........................................................................	25	1	6.00	0.00	0.00	0.00	6.00
......................................TTGTGATTGTTGCTCAGCAAGCC.............................................................................	23	1	6.00	0.00	0.00	0.00	6.00
......................................TTTTGATGGTTGCTCAGAAAGCC.............................................................................	23	1	6.00	0.00	3.00	0.00	3.00
......................................TTTTGATTGTTGCTCCGAACGCC.............................................................................	23	1	5.00	0.00	0.00	1.00	4.00
......................................TTTTGATTGTTGCTCAGAAT................................................................................	20	1	5.00	0.00	4.00	1.00	0.00
......................................TTTTTATTGTTGCTCAGAAAGCC.............................................................................	23	1	5.00	0.00	1.00	1.00	3.00
......................................TTTTGATTGTTCCTCAGAAAGC..............................................................................	22	1	5.00	0.00	2.00	2.00	1.00
......................................TTTTGATTGTTGATAAGAAAGCC.............................................................................	23	1	5.00	0.00	2.00	1.00	2.00

droGri2

CAGCCAACTAC----------TATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA-CTT-----GACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAATT------	Size	Hit Count	Total Norm	V109 Male body
......................................TTTTGATTGTTGCTCAGAAAGCC.............................................................................	23	1	13.00	13.00
......................................TTTTGATTGTTGCTCAGAAAGC..............................................................................	22	1	3.00	3.00
......................................TTTTGATTGTTGCTCAGAAAGCT.............................................................................	23	1	1.00	1.00
......................................TTTTGATTGTTGCTCAGAAA................................................................................	20	1	1.00	1.00
......................................TTTTGATTGTTGCTCAGAGAGCC.............................................................................	23	1	1.00	1.00
......................................TTTTGATTGTTGCTCAGAAAG...............................................................................	21	1	1.00	1.00
......................................TTTTGATTGTTGCTCAGAAAGCCT............................................................................	24	1	1.00	1.00

Generated: 04/20/2012 at 05:21:42 EDT

dme-mir-315

chr3L:18854071-18854154 +

Known_mirbase

antisense_to_intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup