dme-mir-2b-2- 12- and 20-way alignments

dme-mir-2b-2	chr2L:19570182-19570264 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 19570190-19570211
   star strand at position 19570234-19570256
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2L:19570167-19570279 -	ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------GCAAAAA
droSim1	chr2L:19258228-19258340 -	ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------GCAAAAA
droSec1	super_7:3184520-3184632 -	ACCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------GCAAAAA
droYak2	chr2R:6067209-6067321 -	ATCGAAGC-----------------------------------------AAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTCTGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------ACAAAAA
droEre2	scaffold_4845:4719511-4719623 +	ATCGAAGT-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------ACAAAAA
droAna3	scaffold_12916:12013306-12013411 +	-------C-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAAT-GCTCAAG--------ACttttt
dp4	chr4_group5:1152145-1152298 +	ACCCAAAGAATCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAAG--------ACAAAAG
droPer1	super_5:5559630-5559783 +	ACCCAAAGAACCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAAG--------ACAAAAG
droWil1	scaffold_180708:4283206-4283324 +	---GAGGC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATGGCTCAAGTTACATTTAAAAAAA
droVir3	scaffold_12723:2961084-2961196 -	GtGtGtGt-----------------------------------------ttGtGtATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAGC--------tgttttt
droMoj3	scaffold_6500:6907804-6907915 +	GACCAAGA-----------------------------------------GAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGC-TTTTTCTGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAGT--------ACAAAAT
droGri2	scaffold_15126:521314-521426 +	GtGtGtGt-----------------------------------------GtGtGtATTGTGTCCTTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAAC--------ACAAAAA

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2L:19570167-19570279 -	NA	ATCGAA-----------------------------------------ACAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAAA----------------
droSim1	chr2L:19258228-19258340 -	12	ATCGAA-----------------------------------------ACAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAAA----------------
droSec1	super_7:3184520-3184632 -	29	ACCGAA-----------------------------------------ACAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAAA----------------
droYak2	chr2R:6067209-6067321 -	46	ATCGAA-----------------------------------------GCAAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTCTGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAAA----------------
droEre2	scaffold_4845:4719511-4719623 +	20	ATCGAA-----------------------------------------GTAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAAA----------------
droEug1	scf7180000409752:567897-568009 -	105	ATCGAA-----------------------------------------GCAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAAA----------------
droBia1	scf7180000302408:482270-482382 -	55	ATCGAA-----------------------------------------GCAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAAA----------------
droTak1	scf7180000415115:947265-947384 +	9	ATCGAA-----------------------------------------GCAAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAAATTACAA---------A
droEle1	scf7180000491046:3394363-3394475 +	103	ATCGAA-----------------------------------------GCAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAGAA----------------
droRho1	scf7180000779863:41621-41749 -	24	ATCGAA-----------------------------------------GCAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAAACAAAAAGGACAAATTAAAAAAA
droFic1	scf7180000454003:5867-5979 +	1	ATCAAA-----------------------------------------GAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAAA----------------
droKik1	scf7180000302382:755387-755501 +	7	GTCAAA---------------------------------------TCGCAGGAGAATTGTGTCCTTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTTTTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAACAA----------------
droAna3	scaffold_12916:12013302-12013412 +	46	C----C-----------------------------------------ACAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATG-CTCAAGACAAAAA---------------A
droBip1	scf7180000396769:361922-362034 +	12	ACCAAC-----------------------------------------ACAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATG-CTCAAGACAAAAA----------------
dp4	chr4_group5:1152145-1152298 +	17	ACCCAAAGAATCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAAGACAAAAG----------------
droPer1	super_5:5559630-5559783 +	18	ACCCAAAGAACCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAAGACAAAAG----------------
droWil1	scaffold_180708:4283205-4283312 +	113	---GAG-----------------------------------------GCAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATGGCTCAAGTTA--------------------
droVir3	scaffold_12723:2961084-2961203 -	603	AGCGAGAGA----------------------------------GAGAGAAAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAGCACAAAAA----------------
droMoj3	scaffold_6500:6907804-6907929 +	137	GACCAA-----------------------------------------GAGAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGC-TTTTTCTGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAGTACAAAAT--TCAAAACATGAAAA
droGri2	scaffold_15126:521314-521426 +	159	GAGAGA-----------------------------------------GAGAGAGAATTGTGTCCTTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAACACAAAAA----------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------GCAAAAA

Size

Hit Count

Total Norm

droSim1

ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------GCAAAAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	2	66538.00	62522.00	2091.50	294.50	1630.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	4	21445.75	9273.25	8936.50	1849.25	1386.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	4	8259.50	7690.25	332.00	63.50	173.75
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	5	3314.00	2940.80	184.60	30.80	157.80
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	15348.00	821.00	6785.00	2127.00	5615.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	5431.50	5327.50	59.50	9.50	35.00
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	5	2071.60	1790.20	183.00	28.40	70.00
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	5	1550.80	456.20	1006.20	47.20	41.20
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	5	713.40	587.00	94.80	7.20	24.40
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	4	801.00	641.50	121.50	26.25	11.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAC................................	22	4	692.75	2.50	553.50	77.25	59.50
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	5	413.00	23.40	358.60	21.00	10.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	2	756.00	740.50	12.50	2.00	1.00
...............................................................................................................TCACAGCCAGCTTTGATG..................................	18	5	276.60	0.00	266.20	7.00	3.40
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	1286.00	126.00	738.00	163.00	259.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	2	538.00	536.00	1.50	0.50	0.00
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	2	466.50	464.50	2.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	2	455.50	455.00	0.50	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	5	173.00	171.00	0.40	0.40	1.20
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	4	196.00	191.25	3.25	1.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	5	152.80	148.80	2.40	0.60	1.00
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	5	150.80	42.60	98.80	2.80	6.60
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	4	181.25	67.75	80.25	20.25	13.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	2	326.00	323.50	0.50	0.50	1.50
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	5	129.00	68.80	52.00	4.20	4.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	2	314.50	311.50	1.50	0.00	1.50
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	2	292.00	292.00	0.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	5	115.20	42.40	20.60	3.60	48.60
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	5	105.80	87.00	5.40	0.80	12.60
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	4	130.00	13.00	107.00	7.25	2.75
.............................................................................................................TATCACAGCCAGCTTTGAGG..................................	20	5	102.80	2.40	92.00	6.00	2.40
.................................................................TCTTCAAAGTGGTTGTGAAATG............................................................................	22	1	497.00	71.00	125.00	38.00	263.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	121.67	118.00	2.33	0.00	1.33
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	4	90.00	2.25	70.00	8.00	9.75
...............................................................................................................TCACAGCCAGCTTTGATGAGCC..............................	22	5	72.00	16.20	30.40	3.40	22.00
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	3	114.67	109.33	3.00	0.67	1.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	4	83.00	61.75	14.00	6.50	0.75
................................................................TTCTTCAGAGTGGTTGTGAAATG............................................................................	23	1	328.00	1.00	304.00	20.00	3.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	5	65.40	64.20	0.60	0.60	0.00
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	4	78.25	61.25	10.25	4.00	2.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	2	154.50	144.50	8.00	1.50	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	5	59.60	22.80	24.60	7.40	4.80
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	2	145.50	82.00	59.00	3.00	1.50
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	4	72.50	70.25	2.25	0.00	0.00
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	1	280.00	27.00	164.00	42.00	47.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	2	139.50	138.50	1.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAC................................	20	5	55.60	0.60	52.60	0.80	1.60
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	5	55.40	3.60	50.20	1.20	0.40
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	2	132.00	121.50	6.50	1.50	2.50
.............................................................................................................TATCACAGCCAGCTTTGAGGTGCG..............................	24	2	131.00	131.00	0.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	5	49.40	36.80	7.60	1.60	3.40
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	2	119.00	116.50	2.00	0.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	2	118.50	109.00	7.00	0.50	2.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAG................................	22	4	58.50	9.50	44.75	3.25	1.00
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	4	58.25	53.25	2.25	1.25	1.50
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	2	115.50	54.50	61.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	2	110.50	107.00	1.50	0.50	1.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCAA.............................	25	3	73.33	73.00	0.00	0.00	0.33
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	4	54.75	20.25	27.50	5.25	1.75
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	2	107.00	105.50	0.50	0.00	1.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGC...............................	23	4	53.50	53.50	0.00	0.00	0.00
.................................................................................................................ACAGCCAGCTTTGAGGAGC...............................	19	4	53.00	52.50	0.00	0.50	0.00
.............................................................................................................TATCACACCCAGCTTTGAGGAG................................	22	4	51.25	2.50	36.00	5.50	7.25
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	4	50.50	50.50	0.00	0.00	0.00
.................................................................................................................ACAGCCAGCTTTGATGAGC...............................	19	5	37.40	36.80	0.20	0.00	0.40
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGCG..............................	24	2	93.00	93.00	0.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAGCG..............................	24	2	90.50	90.50	0.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	4	44.75	40.25	4.25	0.25	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	4	43.25	43.25	0.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	4	42.25	39.00	1.75	0.25	1.25
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	2	84.00	75.00	5.00	1.00	3.00
.................................................................................................................ACAGCCAGCTTTGATGAG................................	18	5	32.20	25.80	3.40	0.20	2.80
...............................................................................................................TCACAGCCAGCTTTGAGGAGCGT.............................	23	2	77.50	77.00	0.50	0.00	0.00
.............................................................................................................TATCAAAGCCAGCTTTGAGGAGCG..............................	24	2	76.50	75.50	0.50	0.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	4	38.00	37.75	0.00	0.00	0.25
.............................................................................................................TATCACAGTCAGCTTTGAGGAGCG..............................	24	2	76.00	74.50	1.00	0.00	0.50
.............................................................................................................TATCACAGACAGCTTTGAGGAGC...............................	23	4	37.00	37.00	0.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCG..............................	22	5	29.40	15.40	5.20	0.80	8.00
.............................................................................................................TATCACAGCCCGCTTTGCGGAGCG..............................	24	2	73.00	73.00	0.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	4	35.75	34.75	0.50	0.25	0.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	4	35.00	9.00	19.50	6.25	0.25
.............................................................................................................TATCACAGCCGGCTTTGAGGAGCG..............................	24	2	69.50	67.00	1.00	0.50	1.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAGCG..............................	24	2	69.00	66.50	0.50	0.50	1.50
...............................................................................................................TCACAGCCAGCTTTGACGAGCTA.............................	23	3	45.33	45.33	0.00	0.00	0.00
.............................................................................................................TATAACAGCCAGCTTTGAGGAGCG..............................	24	2	66.00	66.00	0.00	0.00	0.00
................................................................TTCTTCAAGGTGGTTGTGAAATG............................................................................	23	1	128.00	2.00	103.00	13.00	10.00
.............................................................................................................CATCACAGCCAGCTTTGAGGAGCG..............................	24	2	63.50	61.00	1.50	0.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGG...............................	23	4	30.75	17.00	9.00	2.75	2.00
.............................................................................................................TATCACAGCCAGCTTCGAGGAGCG..............................	24	2	60.50	59.50	0.00	0.50	0.50
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	4	29.75	12.75	13.00	2.25	1.75
............................................................................................................CTATCACAGCCAGCTTTGAGGAGCG..............................	25	2	58.50	58.50	0.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCCA.............................	23	3	38.67	38.67	0.00	0.00	0.00
................................................................TTCTTCAAAGTGGTTGTGAAATT............................................................................	23	1	116.00	99.00	3.00	6.00	8.00
.............................................................................................................TATCACAGCCAGCGTTGAGGAGCG..............................	24	2	56.00	56.00	0.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTG................................	22	5	22.20	21.00	0.80	0.20	0.20
.............................................................................................................TATCACAGCCAGCTTTGAGGCGC...............................	23	5	21.40	21.00	0.40	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	4	26.50	23.50	1.75	0.75	0.50
.............................................................................................................TATCACAGCAAGCTTTGAGGAGCG..............................	24	2	52.50	52.50	0.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	4	25.75	14.25	8.00	2.75	0.75
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	2	50.50	50.00	0.00	0.00	0.50
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	4	25.00	25.00	0.00	0.00	0.00

droSec1

ACCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------GCAAAAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	2	244301.50	23794.00	136655.00	83852.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	4	113588.25	17423.00	20487.50	75677.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	4	51274.50	6046.75	29322.00	15905.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	59718.50	9443.00	26371.50	23904.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	2	22244.50	6384.00	4008.00	11852.50
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	5	6204.60	408.80	3756.00	2039.80
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	5	4769.40	404.40	1663.20	2701.80
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	4	5018.75	495.25	524.75	3998.75
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	5	3959.60	83.60	384.00	3492.00
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	5	2555.20	135.00	643.40	1776.80
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	10341.00	3831.00	4157.00	2353.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	4	2066.75	731.00	158.00	1177.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	4	1412.25	519.00	123.75	769.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	2	2250.00	246.50	1107.00	896.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	4	926.25	292.75	278.75	354.75
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	5	726.00	124.80	332.00	269.20
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	1168.33	177.33	590.33	400.67
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	2	1579.00	29.50	1120.00	429.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	5	612.00	148.80	202.80	260.40
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	4	688.75	29.50	35.00	624.25
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	5	491.60	16.60	17.40	457.60
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	2	1185.00	15.50	759.00	410.50
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	2299.00	818.00	1225.00	256.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	2	1126.00	58.50	108.00	959.50
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	2	1115.50	69.50	230.50	815.50
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	4	512.00	13.25	158.00	340.75
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	5	408.80	28.80	47.80	332.20
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	4	475.75	6.00	117.25	352.50
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	2	935.00	54.00	194.00	687.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	4	437.75	32.75	34.25	370.75
...............................................................................................................TCACAGCCAGCTTTGAGGAGCGT.............................	23	2	743.50	42.00	407.50	294.00
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	5	278.00	1.40	17.80	258.80
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	5	269.40	60.40	1.80	207.20
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	4	317.25	7.75	239.50	70.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGC...............................	23	4	312.25	13.00	44.00	255.25
.............................................................................................................TGTCACAGCCAGCTTTGAGGAG................................	22	4	294.25	27.75	19.00	247.50
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	4	286.25	143.25	111.00	32.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	4	285.00	57.75	40.00	187.25
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	5	227.00	35.00	36.20	155.80
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	2	564.50	43.50	418.00	103.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	5	224.40	52.40	98.80	73.20
.............................................................................................................TATCACAGCCAGCxTTGAGGAGCG..............................	23	2	554.00	25.00	463.50	65.50
.............................................................................................................TATCACAGCCAGCTTTGAAGAG................................	22	5	210.80	112.40	4.40	94.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGAT............................	26	2	525.50	172.00	58.00	295.50
.................................................................................................................ACAGCCAGCTTTGAGGAGC...............................	19	4	262.00	2.50	180.75	78.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGAA............................	26	2	521.00	230.00	42.50	248.50
.............................................................................................................TATCACAGCTAGCTTTGAGGAGCG..............................	24	2	515.50	10.00	467.50	38.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	5	204.20	0.80	4.80	198.60
.............................................................................................................TATCACAGTCAGCTTTGAGGAGCG..............................	24	2	507.00	8.50	462.50	36.00
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	5	190.20	3.20	4.00	183.00
.............................................................................................................TATTACAGCCAGCTTTGAGGAGCG..............................	24	2	472.50	10.00	417.50	45.00
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	5	182.80	118.40	9.00	55.40
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	2	450.50	25.00	202.50	223.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	4	220.00	86.25	29.25	104.50
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	1	857.00	411.00	223.00	223.00
.............................................................................................................TATCACAGCCAGCTTTGACGAGCG..............................	24	4	200.00	109.00	52.25	38.75
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	4	199.50	23.50	75.00	101.00
.............................................................................................................TATCACACCCAGCTTTGAGGAGCG..............................	24	2	397.00	25.50	275.50	96.00
.............................................................................................................TATCACAGCCAGCxTTGAGGAG................................	21	4	182.75	16.00	87.75	79.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	5	143.40	20.60	21.80	101.00
...............................................................................................................TATCAGCCAGCTTTGAGGAGCG..............................	22	2	354.00	7.50	315.50	31.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGC...............................	23	4	169.50	14.75	37.75	117.00
.............................................................................................................TATCACAGCCAGCTTTGA....................................	18	5	134.60	0.00	21.60	113.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	4	167.75	16.25	35.25	116.25
.............................................................................................................TATCACAGCCAGCTTTGAAGAGCG..............................	24	4	167.50	85.75	22.25	59.50
.............................................................................................................TATCACAGCCAGCTTTGAAGAGCT..............................	24	4	165.75	108.75	13.75	43.25
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	5	122.00	10.00	39.00	73.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	5	121.40	13.80	83.60	24.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	5	120.60	33.40	15.00	72.20
.............................................................................................................TATCACAGCCAGCxTTGAGGAGC...............................	22	4	145.75	6.00	127.50	12.25
.............................................................................................................TATCACACCCAGCTTTGAGGAG................................	22	4	145.25	17.00	39.25	89.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAGC...............................	23	4	145.00	12.50	107.50	25.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGTA............................	26	3	192.67	52.67	41.67	98.33
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	4	142.75	15.25	13.50	114.00
.............................................................................................................TATCACAGCCAGCTTTGGGGA.................................	21	4	141.50	8.00	1.25	132.25
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	3	186.00	15.67	118.00	52.33
.............................................................................................................TATCACAACCAGCTTTGAGGAG................................	22	4	134.75	7.50	11.25	116.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	4	133.25	24.75	15.00	93.50
.................................................................TCTTCAAAGTGGTTGTGAAATG............................................................................	22	1	532.00	136.00	327.00	69.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGCGA.............................	23	2	261.00	18.00	78.50	164.50
.............................................................................................................TATCATAGCCAGCTTTGAGGAGCG..............................	24	2	260.00	9.00	210.00	41.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAGCG..............................	24	2	256.50	30.00	160.50	66.00
.............................................................................................................TATCACAGCAAGCTTTGAGGAG................................	22	4	126.75	4.50	13.25	109.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCCA.............................	23	3	167.67	13.67	121.67	32.33
.............................................................................................................CATCACAGCCAGCTTTGAGGAGCG..............................	24	2	247.00	19.50	152.00	75.50
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	2	247.00	37.50	115.00	94.50
...............................................................................................................TCACAGCCAGCTTTGATG..................................	18	5	96.60	0.00	2.60	94.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	2	241.00	26.50	103.00	111.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	4	118.75	20.00	6.50	92.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	2	237.00	11.50	177.50	48.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	4	115.00	26.75	52.50	35.75
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	4	114.25	14.00	76.00	24.25
.............................................................................................................TACCACAGCCAGCTTTGAGGAG................................	22	4	113.25	20.75	24.00	68.50
.............................................................................................................TATCACAGCCAGCTTCGAGGAGCG..............................	24	2	226.50	24.50	153.50	48.50
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	5	89.80	14.00	22.60	53.20
...............................................................................................................TCACAGCCAGCTTTGACGAGCTA.............................	23	3	148.00	8.67	112.00	27.33
.............................................................................................................TATCACAGCCGGCTTTGAGGAGCG..............................	24	2	221.50	15.50	150.00	56.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCGT.............................	25	2	221.00	24.50	43.00	153.50
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	4	108.50	25.75	11.75	71.00
.............................................................................................................CATCACAGCCAGCTTTGAGGAG................................	22	4	106.75	16.75	21.25	68.75
...............................................................................................................TCACAGCCAGCTTTGATGAGT...............................	21	5	85.00	3.80	3.80	77.40

droYak2

ATCGAAGC-----------------------------------------AAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTCTGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------ACAAAAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	2	100715.50	58013.50	6884.50	19368.00	15799.50	650.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	4	32717.50	3721.50	5994.00	7585.50	12631.50	2785.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	4	16572.00	5718.75	1775.00	5106.25	3873.50	98.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	14943.00	4746.00	1284.00	5836.50	3057.50	19.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	5	3616.20	2418.60	235.80	374.20	516.60	71.00
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	5	2385.40	1066.00	362.60	186.60	714.40	55.80
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	5	1063.80	454.60	149.00	116.80	320.60	22.80
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	5	1022.60	175.60	179.60	41.00	367.20	259.20
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	4	1241.50	297.75	244.75	180.75	489.25	29.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	2	1485.50	304.50	192.00	577.50	410.50	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	4	721.25	157.75	72.25	295.25	194.50	1.50
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	2628.00	602.00	41.00	553.00	304.00	1128.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	4	629.75	27.25	92.25	291.75	214.00	4.50
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	2	785.50	439.00	62.50	58.50	225.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	5	292.20	77.40	26.80	136.00	51.60	0.40
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	2	645.50	457.00	56.50	19.00	113.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	5	256.20	16.20	22.60	9.00	204.40	4.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	4	305.75	35.75	54.25	83.50	116.25	16.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	2	584.00	249.00	31.50	17.00	286.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	5	224.40	94.60	20.80	62.60	46.40	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	2	546.50	368.50	28.50	58.00	91.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	5	215.60	33.40	53.00	20.40	97.40	11.40
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	4	269.00	21.75	54.75	24.00	168.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	2	521.50	237.50	25.50	7.00	251.50	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGCGT.............................	23	2	496.50	206.50	33.00	145.50	110.50	1.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	4	236.25	4.00	53.75	16.00	116.00	46.50
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	5	180.60	13.00	40.40	14.20	61.80	51.20
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	4	215.25	4.25	36.75	6.00	168.25	0.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	2	421.00	52.50	99.00	60.00	196.00	13.50
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	2	419.00	72.50	85.50	53.00	191.00	17.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAC................................	22	4	207.25	1.25	1.25	5.50	17.00	182.25
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	4	197.50	13.00	18.25	0.75	165.50	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	256.00	108.00	16.00	82.00	49.67	0.33
.............................................................................................................TATCACAGCCAGCTTTGAGGTG................................	22	5	144.00	4.40	20.40	0.20	118.80	0.20
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	2	345.00	112.50	55.00	43.50	131.50	2.50
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	4	168.25	26.75	37.50	6.25	94.75	3.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	4	161.75	14.00	13.75	101.75	32.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	5	120.60	54.00	18.00	6.60	39.40	2.60
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	5	118.80	27.40	18.60	2.40	37.20	33.20
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	2	283.50	101.00	22.00	87.00	72.00	1.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	4	138.75	3.75	34.75	9.25	90.25	0.75
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	4	132.75	24.25	25.50	9.00	72.00	2.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGC...............................	23	4	131.50	36.50	16.25	14.25	64.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	2	253.00	180.00	28.50	6.00	38.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTGCG..............................	24	2	248.50	67.00	18.50	3.00	159.50	0.50
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	5	93.80	0.80	31.80	1.40	58.00	1.80
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	5	93.40	0.80	25.40	17.40	49.00	0.80
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	4	112.75	9.00	27.25	8.75	63.50	4.25
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	2	210.50	170.50	5.50	8.00	26.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	3	137.33	76.00	8.67	12.67	38.67	1.33
...............................................................................................................TCACAGCCAGCTTTGATG..................................	18	5	82.00	0.40	5.60	0.00	10.40	65.60
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	5	78.60	6.20	9.40	4.80	45.80	12.40
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	348.00	35.00	6.00	212.00	45.00	50.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	4	84.25	42.50	10.50	8.75	22.25	0.25
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	5	66.20	9.00	15.00	5.80	35.80	0.60
.............................................................................................................TGTCACAGCCAGCTTTGAGGAG................................	22	4	82.25	3.75	19.50	4.75	44.25	10.00
.............................................................................................................TATCACAGCCAGCTTTTAGGAG................................	22	4	81.00	1.50	25.75	19.00	33.50	1.25
.................................................................................................................ACAGCCAGCTTTGAGGAGC...............................	19	4	80.50	38.75	9.75	4.50	27.50	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	5	64.00	13.80	11.20	16.20	22.80	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	2	158.50	25.50	14.00	4.00	115.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	4	78.25	27.25	3.00	34.00	13.50	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	4	76.75	2.75	7.75	4.50	61.75	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGCG..............................	24	2	151.50	53.50	19.50	0.50	78.00	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAG................................	22	4	75.50	4.50	16.50	0.50	54.00	0.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	2	149.00	57.00	18.50	20.50	51.00	2.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	2	143.50	77.00	11.00	24.00	31.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	2	142.50	81.50	12.00	9.50	36.50	3.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	5	56.00	26.40	2.80	6.00	8.00	12.80
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	2	136.50	41.00	19.50	7.50	68.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	4	67.25	3.00	17.00	3.75	38.25	5.25
.............................................................................................................TATCACGGCCAGCTTTGAGGAGC...............................	23	4	66.00	5.75	12.50	12.75	34.50	0.50
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	5	52.60	21.20	6.60	2.00	19.40	3.40
...............................................................................................................TCACAGCCAGCTTTGATGAGCC..............................	22	5	48.40	13.60	6.00	8.00	13.00	7.80
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	4	60.25	16.00	8.75	11.25	24.25	0.00
.................................................................................................................ACAGCCAGCTTTGATGAGC...............................	19	5	47.80	32.00	5.60	2.20	8.00	0.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCGT.............................	25	2	117.00	36.00	16.50	17.50	47.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	5	46.60	5.80	7.40	1.00	26.00	6.40
.............................................................................................................TATCACAGCCAGCTTTGGGGAGC...............................	23	4	57.25	11.50	14.00	5.25	26.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	4	57.25	35.00	3.50	7.00	11.75	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGG..................................	20	5	45.80	0.20	7.20	4.40	12.00	22.00
.............................................................................................................TATCACAGCCAGCTTTCAGGAG................................	22	4	56.75	1.75	7.75	14.50	28.50	4.25
.............................................................................................................TATCACAGCCGGCTTTGAGGAGCG..............................	24	2	113.00	58.50	9.50	14.00	31.00	0.00
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	2	112.50	74.50	6.50	8.50	23.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAGC...............................	23	4	56.25	12.75	2.50	1.75	39.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAGCG..............................	24	4	55.75	36.50	12.50	3.50	3.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGC...............................	23	4	54.75	4.50	9.75	2.75	37.75	0.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAGCG..............................	24	2	108.50	54.00	5.50	5.00	44.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGC...............................	23	5	42.20	12.60	3.40	1.40	24.60	0.20
.............................................................................................................TATCACAGCCAGCTTTTAGGAGCG..............................	24	2	105.50	26.50	23.50	24.50	31.00	0.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAGCG..............................	24	2	105.00	64.50	8.50	14.00	18.00	0.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	4	52.25	4.75	10.50	6.00	25.75	5.25
...............................................................................................................TCACAGCCAGCTTTGACGAGCTA.............................	23	3	69.00	47.00	2.67	4.67	14.67	0.00
.............................................................................................................TATCACAGCCAGCTTTTAGGAGC...............................	23	4	51.00	5.50	13.00	15.75	16.75	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	4	50.00	6.25	11.75	10.25	18.75	3.00
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	4	49.50	0.25	9.00	8.50	12.50	19.25
.............................................................................................................CATCACAGCCAGCTTTGAGGAGCG..............................	24	2	97.00	56.50	8.00	12.50	19.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCAT.............................	25	4	47.00	8.00	3.25	25.75	10.00	0.00
.............................................................................................................TATCACAGCCGGCTTTGAGGAG................................	22	4	46.00	3.25	6.50	3.75	31.75	0.75
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	5	36.60	4.60	8.40	2.40	21.20	0.00
.............................................................................................................TATCACAGCCAGCTTTAAGGAG................................	22	4	43.75	2.75	12.00	10.00	18.25	0.75
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	4	43.25	5.00	9.50	4.00	24.75	0.00

droEre2

ATCGAAGT-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGAT-GCTCAAG--------ACAAAAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	4	150367.00	3307.50	7634.00	2641.25	136784.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	2	165469.00	22611.50	5846.00	14957.50	122054.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	4	30201.00	3571.25	2632.00	4147.75	19850.00
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	5	10189.60	960.20	761.60	218.20	8249.60
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	24220.00	1570.00	680.00	758.50	21211.50
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	5	7473.20	1898.00	507.20	710.60	4357.40
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	5	7446.60	321.00	382.80	121.60	6621.20
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	4	8776.75	330.75	239.00	91.00	8116.00
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	5	4262.80	609.20	247.80	238.40	3167.40
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	4	1699.50	18.25	134.75	15.75	1530.75
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	4	1698.25	63.00	87.00	44.75	1503.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	2	2855.50	125.00	68.00	67.50	2595.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	5	1121.40	137.40	10.80	87.00	886.20
.............................................................................................................TATCACAGCCAGCTTTTAGGAG................................	22	4	1387.25	44.75	17.00	33.25	1292.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	4	1369.75	162.25	54.25	140.50	1012.75
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	5	1021.60	49.00	88.80	7.20	876.60
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	4	1141.00	14.25	77.00	28.00	1021.75
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	5	894.00	15.20	72.00	1.40	805.40
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	4	933.75	12.00	8.75	8.00	905.00
.............................................................................................................TATCACAGCAAGCTTTGAGGAG................................	22	4	858.25	1.75	3.00	1.50	852.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	5	678.80	43.40	33.20	98.60	503.60
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	2	1676.50	42.50	26.00	26.50	1581.50
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	2	1674.00	206.50	38.00	136.50	1293.00
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	4	780.75	19.25	27.50	10.75	723.25
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	5	585.60	35.60	15.40	3.40	531.20
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	5	564.00	37.00	24.00	74.40	428.60
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	4	689.75	3.00	38.00	4.50	644.25
.............................................................................................................TATCACAGCCAGCTTTTAGGAGCG..............................	24	2	1336.00	234.50	12.50	118.50	970.50
.............................................................................................................TATCACAGCCATCTTTGAGGAG................................	22	4	659.00	9.75	5.25	8.75	635.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	4	624.25	30.50	20.50	15.50	557.75
.............................................................................................................TATAACAGCCAGCTTTGAGGAG................................	22	4	595.00	1.25	4.00	0.50	589.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	2	1174.50	37.50	7.50	12.00	1117.50
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	4	564.00	6.75	5.75	4.00	547.50
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	2	1055.00	269.50	28.00	134.50	623.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	2	974.00	27.00	35.00	20.50	891.50
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	2	966.00	157.50	23.00	59.00	726.50
.............................................................................................................TATCACATCCAGCTTTGAGGAGCG..............................	24	2	933.50	102.00	9.50	56.00	766.00
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	1801.00	170.00	106.00	158.00	1367.00
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	4	445.50	3.00	8.00	4.00	430.50
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	2	875.00	37.50	41.00	38.50	758.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	5	332.00	0.40	20.80	0.20	310.60
.............................................................................................................TATCACAGCCAGCTTTGAGGAGGG..............................	24	2	826.00	13.00	1.50	5.50	806.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	4	399.50	3.25	47.75	4.00	344.50
.............................................................................................................TATCACAGCAAGCTTTGAGGAGCG..............................	24	2	757.00	11.00	2.00	6.00	738.00
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	5	293.20	2.80	16.60	2.20	271.60
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	4	355.25	6.50	27.75	5.75	315.25
.............................................................................................................TATCACAGCCAGCTTTTAGGAGC...............................	23	4	349.50	74.25	13.25	68.00	194.00
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	4	348.50	26.50	58.00	20.25	243.75
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	5	268.40	9.40	17.00	11.80	230.20
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	2	669.50	22.50	31.50	15.50	600.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	439.33	78.67	17.33	31.00	312.33
.............................................................................................................TATCACAGCCATCTTTGAGGAGCG..............................	24	2	647.50	73.50	2.50	51.00	520.50
.............................................................................................................TATCACAGCCAGCTTTGAGTAGC...............................	23	4	314.75	50.00	18.00	55.00	191.75
...............................................................................................................TCACAGCCAGCTTTGAGGAGCGT.............................	23	2	629.50	75.00	17.50	2.00	535.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	5	246.00	6.60	22.60	3.40	213.40
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	5	245.80	13.40	20.60	9.40	202.40
...............................................................................................................TCACAGCCAGCTTTGATG..................................	18	5	219.60	0.20	0.20	0.00	219.20
.............................................................................................................TACCACAGCCAGCTTTGAGGAG................................	22	4	268.50	3.50	8.00	4.00	253.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	2	535.50	36.50	5.50	15.00	478.50
.............................................................................................................TATCACAGCCAGCTTTGA....................................	18	5	211.80	1.40	0.60	1.20	208.60
.............................................................................................................TATAACAGCCAGCTTTGAGGAGCG..............................	24	2	508.00	10.00	3.50	4.50	490.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	5	200.60	20.80	60.40	17.80	101.60
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	4	248.50	7.75	11.00	4.50	225.25
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	2	482.00	166.00	54.00	101.00	161.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	4	235.50	6.75	8.25	11.25	209.25
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	5	180.60	1.00	10.20	0.40	169.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	4	222.25	3.75	12.50	2.75	203.25
.............................................................................................................TGTCACAGCCAGCTTTGAGGAG................................	22	4	220.75	4.00	14.75	3.25	198.75
.............................................................................................................TATCACAGCCAGCTTTGATTAG................................	22	5	172.60	56.60	11.20	11.20	93.60
.............................................................................................................TATCAAAGCCAGCTTTGAGGAG................................	22	4	212.25	3.00	1.75	0.50	207.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	2	421.50	161.00	57.50	120.00	83.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCGT.............................	25	5	167.80	9.80	2.40	4.20	151.40
.............................................................................................................TATCACAGCCAGCTTTGAGG..................................	20	5	163.80	0.20	1.40	1.80	160.40
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	2	402.50	24.00	7.50	9.50	361.50
.............................................................................................................TATCACAGCCAGCxTTGAGGAG................................	21	4	199.00	0.00	6.75	0.25	192.00
.............................................................................................................TATCACAGCCAGCTTTGATTAGC...............................	23	5	158.80	78.80	4.00	27.80	48.20
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	2	388.00	43.00	14.50	12.50	318.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	4	191.25	18.00	39.00	9.75	124.50
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	4	180.50	23.00	11.50	17.00	129.00
.............................................................................................................TATCACAGCCAGCTTTGAGGATC...............................	23	4	179.75	35.00	9.00	29.00	106.75
.............................................................................................................TAACACAGCCAGCTTTGAGGAG................................	22	4	174.25	1.50	1.25	1.50	170.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGC...............................	23	4	173.75	4.00	12.50	6.00	151.25
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	2	345.50	108.50	34.00	95.50	107.50
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	2	337.00	29.50	11.00	15.50	281.00
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	5	134.80	14.20	8.40	7.00	105.20
.............................................................................................................TATCACATCCAGCTTTGAGGAGC...............................	23	4	167.75	17.00	3.25	17.00	130.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	4	167.50	48.50	4.00	31.75	83.25
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	4	166.75	20.75	21.25	13.00	111.75
.............................................................................................................CATCACAGCCAGCTTTGAGGAG................................	22	4	163.75	6.25	6.25	2.00	149.25
.................................................................................................................ACAGCCAGCTTTGATGAG................................	18	5	130.20	13.00	8.60	4.20	104.40
.............................................................................................................TATCACACCCAGCTTTGAGGAG................................	22	4	160.50	7.50	3.00	2.75	147.25
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	2	319.50	110.00	40.00	81.00	88.50
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	5	127.80	31.60	4.40	40.60	51.20
.............................................................................................................TATCACAGCCAGCTTTGAGGAGG...............................	23	4	155.75	6.25	1.50	6.00	142.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	4	154.50	17.50	46.25	13.25	77.50
.............................................................................................................TATCACAGCCAGCTTTGAG...................................	19	5	122.20	0.00	3.00	0.20	119.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAGCG..............................	24	2	296.50	32.00	6.50	22.00	236.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAG................................	22	5	118.00	9.20	25.40	9.00	74.40
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	5	114.60	6.00	13.60	4.80	90.20
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	2	280.00	43.50	5.00	27.50	204.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAGT.............................	25	2	277.00	1.00	1.00	0.00	275.00

droAna3

-------C-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAAT-GCTCAAG--------ACttttt	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	3	179602.33	10517.67	145826.33	15520.67	7737.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	1	309704.00	42925.00	243509.00	16346.00	6924.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	3	63291.67	9242.33	46821.33	5170.00	2058.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	27853.50	6027.50	20280.00	1081.00	465.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	4	10540.00	656.75	5942.50	604.00	3336.75
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	4	9269.25	332.50	5688.50	773.00	2475.25
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	4	8741.25	120.50	8080.00	306.00	234.75
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	3	11287.33	254.67	9257.00	689.00	1086.67
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	4	5681.75	370.75	4188.00	298.75	824.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	3	3013.00	613.67	1944.00	428.67	26.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	3	2792.33	542.00	1997.00	186.33	67.00
.............................................................................................................TATCACAGCCATCTTTGAGGAG................................	22	3	2137.00	139.00	1965.67	12.00	20.33
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	6248.00	1527.00	4087.00	562.00	72.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	3	1850.33	69.00	1646.67	52.33	82.33
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	3	1652.33	39.67	1315.00	139.33	158.33
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	3	1591.33	76.33	1465.00	19.67	30.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	1	4744.00	692.00	3188.00	230.00	634.00
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	3	1503.33	77.00	1341.00	70.33	15.00
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	4	1031.75	30.50	845.75	116.75	38.75
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	4	1030.75	47.50	677.50	145.50	160.25
.............................................................................................................TATCACAGCCAGCTTTTAGGAG................................	22	3	1246.33	25.67	1052.67	25.67	142.33
.............................................................................................................TAGCACAGCCAGCTTTGAGGAG................................	22	3	1230.67	0.33	1129.33	88.33	12.67
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	4	922.00	87.00	335.75	44.75	454.50
.............................................................................................................TATCACAGCCATCTTTGAGGAGCG..............................	24	1	3393.00	427.00	2921.00	23.00	22.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	3	1125.67	146.67	719.00	135.33	124.67
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	1	3284.00	278.00	2845.00	65.00	96.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	4	726.75	124.00	462.75	36.50	103.50
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	3	958.00	88.33	821.67	40.00	8.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	4	696.25	61.75	443.25	127.00	64.25
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	3	876.33	21.00	786.33	61.00	8.00
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	4	649.50	3.75	599.50	31.75	14.50
.............................................................................................................TATCACATCCAGCTTTGAGGAGCG..............................	24	1	2361.00	227.00	2090.00	18.00	26.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	1	2302.00	237.00	1962.00	88.00	15.00
.............................................................................................................TATCACAGCCATCTTTGAGGAGC...............................	23	3	734.00	109.67	612.00	5.67	6.67
.............................................................................................................TATCACAGCCAGCTTTGAGGATC...............................	23	3	666.33	59.33	563.00	19.67	24.33
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGCG..............................	24	1	1957.00	1.00	1854.00	87.00	15.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	4	462.50	58.75	340.00	24.25	39.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	3	611.33	171.00	392.67	36.00	11.67
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	1	1695.00	107.00	1465.00	58.00	65.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTG................................	22	4	409.25	49.25	234.25	111.25	14.50
.............................................................................................................TATCACATCCAGCTTTGAGGAGC...............................	23	3	543.33	63.67	459.00	8.67	12.00
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	1	1614.00	334.00	1235.00	37.00	8.00
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	4	382.50	56.75	262.00	60.00	3.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGTT............................	26	1	1481.00	355.00	981.00	130.00	15.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	4	364.50	5.25	241.50	113.50	4.25
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	1	1426.00	347.00	848.00	154.00	77.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGC...............................	23	3	472.67	52.67	394.67	21.33	4.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	471.67	113.33	299.00	20.67	38.67
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	3	466.67	15.00	379.33	57.67	14.67
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	4	349.00	29.00	254.25	20.50	45.25
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	3	450.00	24.00	377.33	30.33	18.33
.............................................................................................................TATCACAGCCAGCTTTTAGGAGCG..............................	24	1	1310.00	99.00	1109.00	23.00	79.00
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	4	321.75	6.00	292.00	17.25	6.50
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	1	1268.00	89.00	1060.00	107.00	12.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGC...............................	23	3	421.67	31.33	313.67	41.33	35.33
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	4	315.50	4.25	10.25	2.50	298.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	1	1230.00	117.00	1065.00	31.00	17.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGC...............................	23	3	395.33	1.00	356.33	33.00	5.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	1	1161.00	82.00	967.00	101.00	11.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	1	1131.00	100.00	914.00	110.00	7.00
.............................................................................................................TATCACAGCCAGCTTTTAGGAGC...............................	23	3	358.33	20.33	269.33	20.67	48.00
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	4	264.50	21.50	172.75	51.75	18.50
.............................................................................................................TGTCACAGCCAGCTTTGAGGAG................................	22	3	333.33	18.67	270.00	37.67	7.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	3	326.00	30.33	118.67	115.67	61.33
.............................................................................................................TATCACAGCAAGCTTTGAGGAG................................	22	3	325.67	8.00	290.33	23.00	4.33
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	3	322.00	10.67	272.33	29.67	9.33
.............................................................................................................TATCACAGCCAGATTTGAGGAGC...............................	23	3	321.33	73.00	234.33	10.67	3.33
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	4	239.00	6.25	87.75	21.00	124.00
.............................................................................................................TATCACAGCCATCTTTGAGGAT................................	22	1	952.00	55.00	885.00	4.00	8.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGC...............................	23	3	316.33	17.67	270.33	27.00	1.33
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	3	313.33	19.67	247.00	29.67	17.00
...............................................................................................................TCACAGCCAGCTTTGATGT.................................	19	4	233.75	1.75	218.00	14.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTGCG..............................	24	1	930.00	270.00	519.00	122.00	19.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	4	230.50	22.00	140.00	50.50	18.00
.............................................................................................................TATCACATCCATCTTTGAGGAG................................	22	1	837.00	43.00	788.00	3.00	3.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	1	812.00	121.00	636.00	32.00	23.00
.............................................................................................................TATCACAGCCAGCTTTGATTAGC...............................	23	4	200.50	1.75	34.75	6.25	157.75
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	3	259.33	9.33	76.33	118.67	55.00
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	4	194.25	3.00	81.25	65.00	45.00
.............................................................................................................TATAACAGCCAGCTTTGAGGAG................................	22	3	259.00	20.33	204.67	31.00	3.00
.............................................................................................................TATCACAGCCAGCTTTGAGG..................................	20	4	194.00	12.00	161.25	18.75	2.00
.............................................................................................................TATCACAGCCAGCTTTGATTAG................................	22	4	190.25	1.00	31.25	11.50	146.50
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	723.00	316.00	303.00	71.00	33.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGC...............................	23	3	239.67	11.67	200.67	23.33	4.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAG................................	22	3	217.33	7.33	172.00	24.00	14.00
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	3	215.67	1.67	51.00	107.67	55.33
.............................................................................................................TATCACAGCCATCTTTGAGGAGCGT.............................	25	1	633.00	115.00	511.00	4.00	3.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGC...............................	23	4	157.50	45.00	98.75	8.00	5.75
.............................................................................................................TATCACAGCCAGCTTTGATGATC...............................	23	4	154.00	5.25	78.00	4.00	66.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTT..............................	24	3	198.67	34.33	145.00	18.33	1.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	1	584.00	59.00	467.00	52.00	6.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	1	581.00	141.00	380.00	35.00	25.00
.............................................................................................................TATCACAGCCATCTTTGAGGATCG..............................	24	1	577.00	49.00	525.00	1.00	2.00
.............................................................................................................TATCACAGCCAGCxTTGAGGAG................................	21	3	191.33	15.67	171.00	2.67	2.00
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	3	189.67	23.00	112.00	38.33	16.33
.............................................................................................................TATCACATCCAGCTTTGAGGAT................................	22	1	548.00	22.00	518.00	2.00	6.00
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	1	544.00	192.00	259.00	89.00	4.00
.............................................................................................................TATCACAGCCAGCTTCGAGGAG................................	22	3	180.67	28.67	119.67	25.00	7.33
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	2	270.00	64.50	163.00	35.00	7.50
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	3	177.33	27.00	129.33	14.00	7.00
.............................................................................................................TATCACAGCCAGCTTTGAG...................................	19	4	133.00	6.75	111.75	13.25	1.25

dp4

ACCCAAAGAATCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAAG--------ACAAAAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	2	64795.50	16937.50	41689.00	6165.00	4.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	4	29245.00	9269.50	8374.50	11545.75	55.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	4	17804.50	3726.00	10491.25	3584.50	2.75
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	5	7907.60	288.00	6441.20	1171.00	7.40
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	5	5300.20	249.20	4238.20	806.60	6.20
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	5	5054.60	266.40	3196.80	1588.00	3.40
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	8870.50	4014.50	4035.50	820.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	4	2382.00	342.25	1310.00	728.00	1.75
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	5	1888.00	101.60	1057.40	725.00	4.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	4	819.75	499.25	79.75	240.50	0.25
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	2	1235.00	868.50	262.00	72.50	32.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	5	470.20	66.80	348.40	55.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	4	501.50	160.75	282.75	58.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	5	368.00	27.80	144.60	194.80	0.80
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	5	225.20	74.60	127.40	23.20	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	5	223.40	45.00	129.80	48.60	0.00
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	5	216.20	19.80	45.80	148.40	2.20
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	5	208.40	4.00	178.00	26.40	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	2	509.00	210.00	245.50	53.50	0.00
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	2	481.50	80.50	348.00	53.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	4	220.25	58.25	92.00	69.50	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	5	167.40	87.40	6.40	73.40	0.20
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	4	196.75	45.50	62.75	88.25	0.25
.................................................................................................................ACAGCCAGCTTTGATGAGC...............................	19	5	150.60	5.40	122.80	22.40	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	5	143.00	21.20	44.60	77.00	0.20
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	2	316.50	14.50	280.50	21.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	2	281.00	10.00	242.50	28.50	0.00
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	5	107.00	2.80	63.40	40.60	0.20
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	5	105.80	6.40	92.20	7.20	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	5	104.60	7.40	48.40	48.80	0.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	2	254.00	3.00	243.00	8.00	0.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	2	252.50	14.50	229.50	8.50	0.00
.................................................................................................................ACAGCCAGCTTTGAGGAGC...............................	19	4	126.25	23.00	79.75	23.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	2	216.50	11.00	182.00	23.50	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	4	107.00	5.00	90.50	11.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	4	105.75	13.00	26.50	66.25	0.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	2	206.00	69.50	37.00	99.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGTT............................	26	2	196.50	128.50	45.50	22.50	0.00
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	2	186.50	175.00	7.50	3.50	0.50
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	5	74.40	12.40	53.80	8.20	0.00
.................................................................................................................ACAGCCAGCTTTGATGAG................................	18	5	72.60	3.00	44.80	24.60	0.20
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	2	181.00	35.00	111.00	35.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	5	72.40	11.80	58.60	2.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	4	89.50	58.50	21.75	9.25	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	4	88.50	7.50	51.75	29.25	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	5	68.80	2.00	40.40	26.40	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	3	106.67	7.67	91.33	7.67	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	4	78.50	26.50	45.50	6.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	4	73.75	10.75	53.50	9.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	3	98.00	30.00	57.33	10.67	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTGCG..............................	24	2	145.50	4.50	125.00	16.00	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAG................................	22	4	71.50	0.50	20.75	50.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	4	71.00	4.00	36.75	30.25	0.00
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	4	70.50	2.25	51.75	16.50	0.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGC...............................	23	4	69.75	1.50	63.75	4.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	4	69.75	3.25	20.25	46.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	4	69.25	11.00	18.00	40.25	0.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	4	68.00	8.00	43.50	16.50	0.00
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	2	135.00	119.50	5.00	10.00	0.50
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	2	133.50	36.00	48.50	49.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	4	66.75	14.00	47.25	5.25	0.25
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	4	66.75	14.50	12.00	40.00	0.25
.............................................................................................................TATCACAGCCAGCTTTGAGGTG................................	22	5	51.80	1.40	23.80	26.60	0.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGC...............................	23	4	63.25	2.75	54.50	6.00	0.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAG................................	22	4	62.75	14.50	9.00	39.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	5	48.20	8.20	20.60	19.00	0.40
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	2	119.00	9.00	92.50	17.50	0.00
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	4	59.00	8.25	32.25	18.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	5	46.80	1.00	2.20	43.60	0.00
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	2	112.50	7.00	95.00	10.50	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCAA.............................	23	5	44.80	6.80	32.40	5.60	0.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	2	109.50	30.00	58.00	21.50	0.00
...............................................................................................................TCACAGCCAGCTTTGACGAGCTA.............................	23	4	53.75	4.75	43.75	5.25	0.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAG................................	22	4	53.50	11.50	10.50	31.50	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGCG..............................	24	2	106.50	0.50	78.00	28.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCC..............................	22	5	42.20	5.40	25.20	11.60	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	2	104.50	6.00	89.50	9.00	0.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	4	51.75	11.75	11.50	28.25	0.25
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	4	51.50	5.50	9.50	36.50	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	2	102.00	25.00	71.00	6.00	0.00
.............................................................................................................TATCAAAGCCAGCTTTGAGGAGCG..............................	24	2	99.00	5.50	87.00	6.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	2	96.00	4.00	78.50	13.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	5	37.80	4.00	17.20	16.60	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGT...............................	21	5	37.60	6.00	16.20	15.40	0.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAGCG..............................	24	2	93.50	2.00	83.50	8.00	0.00
.............................................................................................................TATCACAGACAGCTTTGATGAGC...............................	23	5	36.60	0.00	34.60	2.00	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	4	45.75	12.50	17.25	16.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCG..............................	22	5	35.60	1.40	28.20	6.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAG................................	22	5	35.60	2.60	16.40	16.60	0.00
.................................................................TCTTCAAAGTGGTTGTGAAATG............................................................................	22	2	88.50	55.50	28.00	4.00	1.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGC...............................	23	4	43.50	10.25	13.50	19.75	0.00
.............................................................................................................TATCACAGCCCGCTTTGATGAGC...............................	23	5	34.60	0.20	32.60	1.80	0.00
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	4	43.25	3.25	20.00	19.75	0.25
.............................................................................................................TATCACAGCCAGCTTTGATTAGC...............................	23	5	34.00	0.00	29.00	5.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGC...............................	23	4	42.00	4.50	23.75	13.50	0.25
.............................................................................................................TATCACAGCCAGCTTTGATTAG................................	22	5	33.60	0.00	24.60	9.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTT..............................	24	4	41.00	30.50	3.50	7.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGC...............................	23	4	40.75	1.25	24.00	15.50	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGC...............................	23	4	40.50	0.00	24.50	16.00	0.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGC...............................	23	4	40.25	4.75	8.50	27.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAGCG..............................	24	4	40.25	3.50	32.75	4.00	0.00

droPer1

ACCCAAAGAACCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAAG--------ACAAAAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	4	29338.00	2498.25	2524.00	9997.25	13877.50	441.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	2	33996.00	3064.50	7036.00	6459.00	17287.50	149.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	4	10762.50	867.25	2230.75	2931.50	4700.25	32.75
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	5	3080.20	89.00	1052.60	1187.80	725.20	25.60
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	5	2916.80	64.20	1553.60	794.00	473.00	32.00
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	5	2789.60	152.20	1379.40	669.20	575.80	13.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	4679.50	1075.50	559.50	790.50	2253.00	1.00
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	5	1607.80	73.00	397.40	657.20	449.40	30.80
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	4	1520.25	130.75	359.75	555.75	467.50	6.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	4	763.25	125.25	18.75	186.50	432.25	0.50
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	2	1408.00	655.50	72.50	66.00	296.00	318.00
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	5	352.80	6.80	50.80	153.60	139.80	1.80
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	5	262.80	13.40	116.00	53.20	79.60	0.60
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	5	262.60	6.20	15.80	118.80	116.60	5.20
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	5	262.00	37.40	50.40	62.00	111.60	0.60
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	2	653.50	73.50	48.50	109.50	422.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	4	317.75	33.50	34.00	45.75	204.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	4	245.75	18.00	33.25	72.25	118.50	3.75
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	5	192.60	19.40	2.80	45.40	124.40	0.60
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	4	194.25	2.25	23.75	68.00	100.00	0.25
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	5	150.20	2.00	14.20	40.00	93.60	0.40
.............................................................................................................TATCACAGCCAGCTTTGAGGTG................................	22	5	146.60	1.00	6.20	17.20	122.00	0.20
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	5	145.40	17.60	36.40	25.20	66.00	0.20
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	2	361.50	18.00	5.50	96.50	241.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	4	160.00	5.25	5.50	36.00	113.25	0.00
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	5	124.40	5.80	27.40	45.60	43.60	2.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	4	154.00	6.50	14.00	49.25	84.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	5	115.40	0.00	1.60	36.00	77.20	0.60
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	4	139.75	3.25	4.00	33.75	98.75	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	5	103.00	4.20	5.40	43.20	50.20	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	5	99.60	2.00	58.80	21.20	16.00	1.60
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	2	245.50	1.50	64.50	52.00	127.50	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAG................................	22	4	120.75	0.25	1.50	10.25	108.75	0.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	4	115.25	3.00	1.75	48.00	62.25	0.25
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	4	110.25	2.75	4.75	37.00	65.75	0.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	2	216.50	8.00	5.50	45.50	157.50	0.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAG................................	22	4	106.75	7.25	1.25	39.50	58.50	0.25
.............................................................................................................TATCACAGCCAGCTTTGAGGTGCG..............................	24	2	193.50	0.00	12.50	13.00	168.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	2	186.50	0.00	41.50	24.50	120.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	4	91.75	0.25	10.25	29.25	52.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	2	176.00	7.50	14.50	31.50	121.50	1.00
.................................................................................................................ACAGCCAGCTTTGATGAGC...............................	19	5	67.80	0.00	33.80	17.40	16.20	0.40
.................................................................................................................ACAGCCAGCTTTGAGGAGC...............................	19	4	83.00	0.25	16.25	29.25	37.25	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	4	81.75	1.75	9.75	33.25	36.25	0.75
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	5	65.20	1.80	6.40	11.40	44.60	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	3	108.00	7.00	20.33	19.00	61.67	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGCG..............................	24	2	154.50	0.00	5.00	7.00	142.50	0.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	2	151.00	8.50	5.00	41.50	95.50	0.50
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	5	60.40	2.60	11.00	21.60	25.20	0.00
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	5	59.00	1.40	2.60	14.40	40.60	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAC................................	22	4	72.25	0.25	0.50	12.50	30.25	28.75
.............................................................................................................TATCACAGCCAGCTTTCAGGAG................................	22	4	70.75	0.00	1.50	20.25	49.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	5	56.20	1.60	9.80	5.80	37.60	1.40
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	4	69.00	3.00	3.00	21.50	41.25	0.25
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	4	67.00	0.75	6.75	10.50	48.25	0.75
.................................................................................................................ACAGCCAGCTTTGATGAG................................	18	5	51.40	0.00	16.20	21.00	14.00	0.20
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	4	63.75	0.50	16.50	16.75	30.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	4	60.75	13.25	13.50	7.00	27.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	2	118.50	0.00	26.50	17.00	75.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGTT............................	26	2	115.50	26.00	5.50	17.50	66.50	0.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGC...............................	23	4	57.50	2.00	2.25	19.00	34.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGG..................................	20	5	45.80	1.20	0.40	15.00	25.80	3.40
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGC...............................	23	4	55.50	2.50	3.25	18.00	31.75	0.00
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	2	107.50	65.50	2.50	2.00	29.50	8.00
.............................................................................................................TATCAGAGCCAGCTTTGAGGAG................................	22	4	51.50	0.25	1.00	36.00	14.25	0.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGC...............................	23	4	51.25	0.00	1.75	6.75	42.75	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	2	101.50	4.50	20.00	25.50	51.50	0.00
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	4	50.00	2.00	2.50	11.50	34.00	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	4	49.50	0.75	13.50	14.25	21.00	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	4	47.75	4.25	2.25	10.00	30.75	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	4	47.50	13.00	1.00	5.00	28.50	0.00
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	2	93.50	56.50	1.50	3.50	28.50	3.50
.............................................................................................................TATCACAGCCAGCTTTGAAGAG................................	22	5	37.20	1.40	4.80	20.40	10.60	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGACCG..............................	24	2	92.50	1.00	2.00	15.50	72.00	2.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	2	91.50	2.00	39.50	8.00	41.50	0.50
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	4	45.50	1.00	3.75	11.00	29.25	0.50
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	2	90.50	1.50	21.00	13.50	54.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	4	44.75	3.75	1.25	9.00	30.50	0.25
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	5	35.80	0.80	29.40	1.20	4.40	0.00
.............................................................................................................TATCACAGCCAGCTTTAAGGAG................................	22	4	44.50	0.75	2.50	18.50	22.75	0.00
................................................................TTCTTCAAAGTGGTTGTGA................................................................................	19	2	82.00	50.00	0.00	5.00	27.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCC..............................	22	5	32.60	4.60	3.00	6.60	16.00	2.40
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	5	32.20	1.60	5.60	6.40	15.60	3.00
.............................................................................................................TATCACAGCCACCTTTGAGGAG................................	22	4	40.00	0.50	1.50	8.75	29.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	2	78.50	3.50	5.00	13.00	57.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	2	77.50	1.00	11.00	10.00	54.50	1.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAG................................	22	4	38.50	1.00	3.25	5.25	29.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGC...............................	23	4	38.25	1.25	2.75	4.50	29.75	0.00
.............................................................................................................TATCAAAGCCAGCTTTGAGGAG................................	22	4	37.75	0.00	1.25	17.25	19.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGCAGC...............................	23	4	37.50	1.00	2.00	8.75	25.75	0.00
.............................................................................................................TATCATAGCCAGCTTTGAGGAG................................	22	4	37.25	3.00	0.75	22.50	11.00	0.00
.............................................................................................................TATCACAGCCGGCTTTGAGGAG................................	22	4	37.25	1.25	3.00	11.25	21.75	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGAAG................................	22	4	37.00	1.50	2.00	23.00	10.50	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCAA.............................	23	5	29.40	3.00	8.80	6.00	11.60	0.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAG................................	22	4	36.50	1.50	1.75	10.75	22.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	4	36.00	5.50	6.00	5.50	19.00	0.00
.............................................................................................................TATCACAGCCAGCGTTGAGGAG................................	22	4	35.75	0.25	1.00	5.00	29.50	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGT...............................	21	5	28.40	3.00	4.40	7.00	14.00	0.00
.............................................................................................................TATAACAGCCAGCTTTGAGGAG................................	22	4	34.75	0.75	2.00	6.50	25.50	0.00
.............................................................................................................CATCACAGCCAGCTTTGAGGAG................................	22	4	34.50	1.75	2.25	8.75	21.50	0.25
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	2	68.50	0.50	12.50	6.00	49.50	0.00

droWil1

---GAGGC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATGGCTCAAGTTACATTTAAAAAAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	1	1062660.00	40207.00	455196.00	564063.00	3194.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	3	193494.33	6078.00	86366.00	95440.67	5609.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	3	120626.67	5501.00	60791.33	53921.33	413.00
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	4	28055.75	69.00	2061.75	24605.00	1320.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	1	104481.00	8449.00	30780.00	65177.00	75.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	4	21591.75	356.25	10806.00	10122.75	306.75
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	4	18400.50	233.50	9065.75	8811.75	289.50
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	4	15611.50	197.25	5838.25	9441.00	135.00
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	3	9320.00	178.00	4194.67	4876.33	71.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	1	13344.00	1192.00	6320.00	5829.00	3.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	3	4168.67	197.67	2516.67	1447.67	6.67
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	4	2302.25	35.50	1728.50	537.75	0.50
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	8725.00	273.00	5122.00	1442.00	1888.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	4	1937.25	97.00	873.00	966.00	1.25
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	4	1838.00	16.25	203.25	1344.00	274.50
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	4	1529.50	30.25	517.25	915.25	66.75
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	1	5363.00	29.00	2668.00	2666.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	4	1027.00	15.75	520.50	490.25	0.50
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	4	995.25	11.00	589.25	385.25	9.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	3	1288.00	207.33	374.67	697.00	9.00
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	4	953.50	2.25	55.25	803.00	93.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	3	1190.67	69.67	618.67	471.67	30.67
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	4	768.25	4.75	750.50	13.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	3	1009.00	37.67	386.00	583.67	1.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	1	2972.00	11.00	565.00	2395.00	1.00
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	3	933.33	4.00	451.67	477.00	0.67
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	4	656.00	1.50	34.50	580.00	40.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	1	2489.00	12.00	670.00	1803.00	4.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	1	2486.00	59.00	455.00	1963.00	9.00
.................................................................TCTTCAAAGTGGTTGTGAAATG............................................................................	22	1	2381.00	72.00	1609.00	374.00	326.00
.............................................................................................................TATCACAGCAAGCTTTGAGGAGCG..............................	24	1	2327.00	6.00	464.00	1857.00	0.00
.............................................................................................................CATCACAGCCAGCTTTGAGGAGCG..............................	24	1	2301.00	32.00	482.00	1786.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	4	548.50	10.75	324.50	171.75	41.50
.............................................................................................................TATAACAGCCAGCTTTGAGGAGCG..............................	24	1	2172.00	15.00	513.00	1644.00	0.00
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	1	2133.00	12.00	431.00	1688.00	2.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	2	1049.50	44.00	451.50	552.50	1.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAACG..............................	24	1	2092.00	23.00	168.00	1901.00	0.00
.............................................................................................................TATCACATCCAGCTTTGAGGAGCG..............................	24	1	2085.00	18.00	1268.00	795.00	4.00
.............................................................................................................TATCAAAGCCAGCTTTGAGGAGCG..............................	24	1	2018.00	6.00	154.00	1857.00	1.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	3	633.67	2.67	359.67	271.33	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	1	1776.00	56.00	708.00	1009.00	3.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	4	440.00	4.25	315.75	107.25	12.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	3	563.00	17.33	264.00	280.67	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCAA.............................	25	2	805.00	15.50	757.00	32.50	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	1	1567.00	10.00	988.00	565.00	4.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	1	1523.00	45.00	221.00	1240.00	17.00
.............................................................................................................TATCACAACCAGCTTTGAGGAGCG..............................	24	1	1481.00	16.00	152.00	1313.00	0.00
.................................................................................................................ACAGCCAGCTTTGATGAG................................	18	4	365.50	1.00	46.50	313.00	5.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	1	1459.00	40.00	531.00	882.00	6.00
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	3	483.33	3.00	264.00	171.00	45.33
.............................................................................................................TATCACAGCCAGCTTTTAGGAGCG..............................	24	1	1435.00	23.00	901.00	509.00	2.00
.............................................................................................................TATCACAGCCATCTTTGAGGAGCG..............................	24	1	1417.00	25.00	876.00	509.00	7.00
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	3	469.33	7.67	315.67	146.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATG..................................	18	4	343.50	0.00	7.50	144.00	192.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAGCG..............................	24	3	451.33	3.67	81.00	366.33	0.33
...............................................................................................................TCACAGCCAGCTTTGATGAGCAA.............................	23	4	336.75	1.25	283.00	52.50	0.00
.............................................................................................................TATCACAGCCAACTTTGAGGAGCG..............................	24	1	1347.00	15.00	141.00	1189.00	2.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAGCG..............................	24	1	1321.00	62.00	468.00	790.00	1.00
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	3	440.00	0.33	120.67	314.33	4.67
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	1	1310.00	45.00	507.00	757.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	1	1294.00	17.00	860.00	412.00	5.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	1	1223.00	56.00	273.00	893.00	1.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	407.33	21.33	225.67	160.00	0.33
.............................................................................................................TATCACAGCCAGCTTTGAGAAGCG..............................	24	1	1220.00	7.00	154.00	1059.00	0.00
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	3	406.00	0.33	90.00	304.67	11.00
..............................................................................................................ATCACAGCCAGCTTTGATGAG................................	21	4	299.25	1.50	57.75	236.50	3.50
.............................................................................................................TATCACAGCAAGCTTTGAGGAG................................	22	3	390.33	1.00	90.33	298.33	0.67
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	1	1145.00	41.00	374.00	722.00	8.00
.............................................................................................................TATAACAGCCAGCTTTGAGGAG................................	22	3	377.67	2.00	100.67	275.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	2	561.00	19.50	190.50	345.00	6.00
.............................................................................................................CATCACAGCCAGCTTTGAGGAG................................	22	3	372.67	4.33	71.33	294.67	2.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAC................................	22	3	364.00	7.67	45.33	69.67	241.33
.............................................................................................................TATCACAGCCAGCxTTGAGGAGCG..............................	23	1	1090.00	35.00	389.00	665.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	1	1087.00	50.00	344.00	692.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGACCG..............................	24	1	1081.00	94.00	352.00	631.00	4.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	4	269.25	2.00	18.00	235.00	14.25
...............................................................................................................TCACAGCCAGCTTTGATGAGCC..............................	22	4	263.00	8.75	100.00	124.00	30.25
.............................................................................................................TATCACAGCCAGCTTTAAGGAGCG..............................	24	1	1045.00	9.00	160.00	870.00	6.00
.............................................................................................................TATCACAGCCAGCTTCGAGGAGCG..............................	24	1	1026.00	41.00	358.00	625.00	2.00
.................................................................................................................ACAGCCAGCTTTGATGAGC...............................	19	4	253.50	2.75	101.25	149.50	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	3	328.00	9.33	139.00	176.33	3.33
.............................................................................................................TATCACAGCCAGCTTTTAGGAG................................	22	3	321.67	7.00	191.33	117.33	6.00
.............................................................................................................TATCACACCCAGCTTTGAGGAGCG..............................	24	1	957.00	32.00	348.00	575.00	2.00
.............................................................................................................TATCAAAGCCAGCTTTGAGGAG................................	22	3	313.67	0.67	23.33	289.67	0.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAG................................	22	4	235.00	2.25	40.50	191.50	0.75
.............................................................................................................TATCACAGCCAGCTTTGAGAAG................................	22	3	302.00	1.00	35.33	265.33	0.33
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	1	901.00	25.00	217.00	659.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	3	300.33	2.67	204.33	93.00	0.33
.............................................................................................................AATCACAGCCAGCTTTGAGGAGCG..............................	24	1	895.00	7.00	55.00	833.00	0.00
.............................................................................................................TATCACAGCCAGCxTTGAGGAG................................	21	3	295.33	7.33	83.33	202.67	2.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	3	290.67	33.33	103.00	154.33	0.00
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	869.00	90.00	489.00	198.00	92.00
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	3	282.00	12.00	143.67	126.00	0.33
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	4	206.50	10.75	83.25	110.00	2.50
.............................................................................................................TATCACAGCCAGCTTTGACGAGCG..............................	24	3	270.00	7.00	93.67	169.33	0.00
.............................................................................................................TATCACAGCCAGCTCTGAGGAGCG..............................	24	1	810.00	25.00	258.00	527.00	0.00
.............................................................................................................TATCACAGCCATCTTTGAGGAG................................	22	3	269.67	2.67	169.00	89.67	8.33
.............................................................................................................GATCACAGCCAGCTTTGAGGAGCG..............................	24	1	806.00	5.00	87.00	714.00	0.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAG................................	22	3	268.67	6.00	95.33	162.67	4.67
.............................................................................................................TATCACATCCAGCTTTGAGGAGC...............................	23	3	266.33	3.00	176.67	86.00	0.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	1	792.00	12.00	319.00	454.00	7.00

droVir3

GtGtGtGt-----------------------------------------ttGtGtATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAGC--------tgttttt	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	3	29251.67	12853.00	9636.33	3521.67	1674.00	1566.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	1	75974.00	35069.00	10252.00	29915.00	273.00	465.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	3	15830.00	7603.33	2577.67	5530.33	57.33	61.33
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	4	1474.00	213.25	336.00	888.25	15.25	21.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	2422.00	1362.00	296.50	758.50	2.00	3.00
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	4	1170.50	212.00	636.50	272.75	24.25	25.00
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	3	1485.00	433.00	867.33	121.33	38.33	25.00
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	4	839.50	50.75	449.00	152.00	34.25	153.50
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	4	725.00	100.50	302.00	298.00	9.75	14.75
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	1546.00	844.00	217.00	158.00	87.00	240.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	3	467.67	206.67	72.67	187.33	0.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	3	401.00	269.33	106.67	21.00	2.67	1.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	4	261.00	141.75	26.00	93.00	0.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	3	291.00	153.00	75.33	37.33	13.00	12.33
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	4	195.50	18.25	121.50	1.75	9.00	45.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	4	181.25	38.00	19.75	123.25	0.00	0.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	1	681.00	453.00	93.00	135.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	4	163.25	23.00	122.00	9.00	3.75	5.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAC................................	22	3	212.33	11.67	19.33	5.33	94.67	81.33
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	4	134.25	15.00	93.50	22.25	2.75	0.75
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	1	521.00	222.00	30.00	269.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	4	126.75	7.00	10.50	108.75	0.00	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	3	157.00	89.00	37.33	20.67	4.33	5.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	3	152.00	76.00	69.67	5.33	0.67	0.33
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	440.00	343.00	46.00	20.00	13.00	18.00
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	3	143.67	13.33	112.67	17.33	0.00	0.33
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	3	139.33	11.67	94.00	27.00	4.00	2.67
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	1	414.00	46.00	123.00	240.00	0.00	5.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	4	96.25	2.50	90.25	0.25	0.50	2.75
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	1	338.00	41.00	95.00	202.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	3	107.67	4.00	44.00	59.67	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTTAGGAGC...............................	23	3	101.67	5.67	5.33	90.67	0.00	0.00
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	1	301.00	223.00	55.00	3.00	9.00	11.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	1	300.00	9.00	18.00	273.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	4	73.00	36.50	35.25	0.50	0.25	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGATC...............................	23	3	94.33	48.67	7.00	38.67	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	4	68.75	10.75	3.75	50.75	0.50	3.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTG................................	22	4	67.50	3.00	60.75	3.25	0.25	0.25
.............................................................................................................TATCACAGCCAGCTTTTAGGAGCG..............................	24	1	256.00	16.00	3.00	237.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAGC...............................	23	3	85.00	4.00	7.67	73.33	0.00	0.00
.................................................................................................................ACAGCCAGCTTTGAGGAGC...............................	19	3	83.00	17.33	24.33	41.33	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	3	83.00	33.00	6.67	42.33	0.00	1.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	4	61.75	25.75	21.25	14.75	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	4	60.25	2.50	0.75	57.00	0.00	0.00
................................................................TTCTTCAAAGTGGTTGTGA................................................................................	19	1	240.00	145.00	90.00	0.00	2.00	3.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	1	230.00	23.00	16.00	191.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGG..................................	20	4	55.50	8.75	18.50	2.25	12.50	13.50
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	4	53.00	15.00	18.75	6.00	8.50	4.75
.............................................................................................................TATCACAGCCAGCTTTGAGCAGC...............................	23	3	69.00	7.00	30.33	31.67	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTTAGGAG................................	22	3	67.33	9.33	10.67	44.33	1.67	1.33
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	1	201.00	66.00	56.00	77.00	1.00	1.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	1	200.00	9.00	29.00	162.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	4	46.75	0.25	30.50	4.25	1.25	10.50
.............................................................................................................TAGCACAGCCAGCTTTGAGGAG................................	22	3	57.33	1.00	52.67	3.67	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	3	57.00	14.00	29.67	7.67	3.00	2.67
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	3	56.00	11.00	16.00	29.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	3	53.67	33.33	5.00	15.00	0.00	0.33
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	4	40.25	2.75	28.00	2.75	2.00	4.75
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	4	39.25	4.50	20.25	11.75	1.50	1.25
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	3	52.00	11.33	10.33	10.67	10.33	9.33
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	1	156.00	18.00	20.00	118.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTAAGGAG................................	22	3	51.67	29.33	13.33	7.33	0.67	1.00
.............................................................................................................TATCACAGCCAGCTTTGATTAGC...............................	23	4	37.00	0.50	1.75	34.75	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGACGAGCTA.............................	23	3	49.00	2.33	5.67	41.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	2	72.50	23.00	7.50	41.00	0.50	0.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCAA.............................	25	2	70.00	19.00	3.50	47.50	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTCAGGAGCG..............................	24	1	139.00	32.00	13.00	94.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATG..................................	18	4	34.75	0.00	1.25	0.00	3.00	30.50
.............................................................................................................TATCACAGCCAGCTTTGAGGACCG..............................	24	1	137.00	47.00	41.00	49.00	0.00	0.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGC...............................	23	3	45.67	5.00	4.33	36.33	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCG..............................	22	4	33.75	10.25	10.75	12.25	0.25	0.25
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	4	33.75	4.75	20.25	8.75	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGCAGCG..............................	24	1	135.00	9.00	62.00	64.00	0.00	0.00
.............................................................................................................TATCACATCCAGCTTTGAGGAGCG..............................	24	1	134.00	15.00	7.00	112.00	0.00	0.00
.............................................................................................................TATCACAGCCATCTTTGAGGAGCG..............................	24	1	132.00	22.00	8.00	102.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	44.00	10.67	2.33	31.00	0.00	0.00
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	3	43.67	10.33	28.00	5.33	0.00	0.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	3	43.67	14.00	15.33	6.00	4.00	4.33
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	3	43.00	8.00	4.00	31.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCC..............................	22	4	32.25	10.00	7.25	10.25	2.00	2.75
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	3	43.00	18.67	15.00	6.00	1.00	2.33
.............................................................................................................TATCACAGCCAGCTTTGAG...................................	19	4	31.50	7.50	21.25	0.25	0.50	2.00
.............................................................................................................TATCACAGCCAGCTTTCAGGAGC...............................	23	3	40.67	8.00	8.67	23.67	0.00	0.33
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	4	30.00	6.50	18.50	4.25	0.50	0.25
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	3	39.67	3.67	18.33	17.67	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAG................................	22	3	39.67	1.67	34.67	3.33	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	3	39.33	4.67	20.00	14.33	0.33	0.00
.............................................................................................................TATCACAGCCACCTTTGAGGAGCG..............................	24	1	117.00	30.00	10.00	75.00	2.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGC...............................	23	4	28.50	0.75	8.25	19.25	0.25	0.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTGCG..............................	24	1	113.00	8.00	61.00	43.00	1.00	0.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	1	112.00	46.00	10.00	55.00	1.00	0.00
.............................................................................................................TATCACAGCCAGCTTTCAGGAG................................	22	3	37.00	8.33	15.67	12.00	0.67	0.33
.............................................................................................................TATCACATCCAGCTTTGAGGAGC...............................	23	3	36.33	11.00	2.33	22.67	0.00	0.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	1	109.00	41.00	15.00	53.00	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTAAGGAGCG..............................	24	1	106.00	57.00	10.00	39.00	0.00	0.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	3	33.67	5.33	5.67	22.67	0.00	0.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAG................................	22	4	25.00	6.00	7.50	11.25	0.00	0.25
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	1	100.00	33.00	23.00	41.00	1.00	2.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	3	33.00	7.67	11.33	13.00	0.67	0.33
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	1	97.00	27.00	36.00	31.00	0.00	3.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCCA.............................	23	3	32.00	5.00	5.00	21.67	0.00	0.33

droMoj3

GACCAAGA-----------------------------------------GAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGC-TTTTTCTGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAGT--------ACAAAAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	1	265874.00	53800.00	32733.00	19120.00	160221.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	3	45569.00	12538.33	13718.00	9242.67	10070.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	3	27009.33	6350.33	4554.33	3141.67	12963.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	4	5015.25	491.25	425.25	322.75	3776.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	9110.00	3023.00	1462.00	858.50	3766.50
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	4	3087.75	324.75	578.75	459.75	1724.50
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	3	3910.67	679.67	924.67	671.33	1635.00
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	4	1485.00	179.25	342.25	263.50	700.00
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	4	1158.25	104.25	440.75	338.50	274.75
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	2943.00	1231.00	780.00	246.00	686.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	1	2538.00	1202.00	368.00	212.00	756.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	3	716.67	182.67	147.00	101.67	285.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	3	669.33	228.67	231.00	154.67	55.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	4	465.50	110.00	45.75	27.00	282.75
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	1	1716.00	18.00	259.00	155.00	1284.00
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	1	1661.00	22.00	112.00	247.00	1280.00
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	4	409.50	34.50	154.25	114.25	106.50
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	1	1498.00	11.00	85.00	236.00	1166.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	3	470.00	129.67	127.33	92.67	120.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	4	346.50	112.25	48.50	30.00	155.75
.............................................................................................................TATCACAGCCCGCTTTGAGGAGCG..............................	24	1	1372.00	7.00	46.00	343.00	976.00
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	4	285.50	22.75	125.00	104.00	33.75
...............................................................................................................TCACAGCCAGCTTTGAGGAGCG..............................	22	1	1028.00	38.00	76.00	46.00	868.00
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	976.00	595.00	258.00	77.00	46.00
.............................................................................................................TATCACAGCCAGCTTTGAT...................................	19	4	228.75	6.25	120.50	100.50	1.50
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	4	216.50	5.25	49.25	95.00	67.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCG..............................	24	4	211.25	29.50	26.50	37.00	118.25
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	1	787.00	93.00	236.00	93.00	365.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	1	728.00	14.00	44.00	18.00	652.00
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	3	236.33	2.00	97.67	61.33	75.33
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	3	230.33	2.67	18.67	150.00	59.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	3	205.33	1.00	28.33	111.33	64.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	3	202.67	35.33	85.67	53.00	28.67
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	195.33	55.00	14.33	8.00	118.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTGCG..............................	24	1	581.00	11.00	225.00	131.00	214.00
.............................................................................................................TATCACAGCCAGCTTTGAGGGGCG..............................	24	2	282.00	19.00	38.50	19.50	205.00
.............................................................................................................TATCACAGCCAGCTTTGAGGTG................................	22	4	139.00	1.75	81.25	43.75	12.25
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	1	554.00	267.00	203.00	73.00	11.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCAA.............................	25	4	137.25	63.00	3.50	2.75	68.00
.............................................................................................................TATCACAGCCAGCTTTGAGTAG................................	22	3	176.33	22.00	73.33	65.33	15.67
................................................................TTCTTCAAAGTGGTTGTGA................................................................................	19	1	511.00	197.00	215.00	95.00	4.00
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	4	123.00	24.00	56.75	39.50	2.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	1	483.00	24.00	43.00	24.00	392.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGTT............................	26	1	475.00	128.00	152.00	94.00	101.00
.................................................................................................................ACAGCCAGCTTTGAGGAGC...............................	19	3	147.67	4.00	30.33	18.67	94.67
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	4	108.50	25.75	24.75	19.50	38.50
.............................................................................................................TATCGCAGCCAGCTTTGAGGAGCG..............................	24	1	422.00	71.00	92.00	45.00	214.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAGC...............................	23	3	140.33	0.67	4.67	54.67	80.33
.............................................................................................................TATCACAGCCAGCCTTGAGGAGCG..............................	24	1	412.00	67.00	66.00	49.00	230.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGC.............................	25	1	398.00	157.00	44.00	29.00	168.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	1	390.00	61.00	91.00	47.00	191.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	4	94.75	10.75	15.25	7.50	61.25
...............................................................................................................TCACAGCCAGCTTTGATGA.................................	19	4	91.25	5.25	40.50	34.25	11.25
.............................................................................................................TAGCACAGCCAGCTTTGAGGAGCG..............................	24	1	353.00	2.00	113.00	56.00	182.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	4	87.25	5.75	15.25	12.50	53.75
...............................................................................................................TCACAGCCAGCTTTGAGGAG................................	20	3	115.00	9.33	28.67	21.67	55.33
.............................................................................................................TATCACAGCCAGCTTTGAGGATCG..............................	24	1	344.00	37.00	68.00	53.00	186.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	1	343.00	18.00	84.00	27.00	214.00
.............................................................................................................TATCACAGCCAGCTTTGAAGAGCG..............................	24	3	112.00	6.00	6.33	14.67	85.00
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGCG..............................	24	1	327.00	29.00	120.00	62.00	116.00
...............................................................................................................TCACAGCCAGCTTTGAGGAGC...............................	21	3	106.67	3.33	13.33	7.67	82.33
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	3	103.67	11.00	19.67	10.00	63.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	3	102.67	10.00	45.33	30.67	16.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	3	102.00	10.67	35.67	45.67	10.00
...............................................................................................................TCACAGCCAGCTTTGACGAGCTA.............................	23	3	101.33	3.67	10.33	7.00	80.33
.............................................................................................................TATCACAGCCAGCTTTGAGGGG................................	22	4	75.75	6.75	28.25	16.75	24.00
.................................................................................................................ACAGCCAGCTTTGATGAGC...............................	19	4	75.50	0.75	13.00	8.50	53.25
.............................................................................................................TATCACAGCCAGATTTGAGGAGCG..............................	24	1	299.00	12.00	65.00	31.00	191.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	3	97.00	11.67	13.67	7.67	64.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAGCG..............................	24	1	281.00	32.00	51.00	22.00	176.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	4	70.25	4.75	30.25	20.25	15.00
.............................................................................................................TATCACAGCCGGCTTTGAGGAGCG..............................	24	1	276.00	24.00	46.00	29.00	177.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCAA.............................	25	2	137.00	33.00	4.50	5.00	94.50
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	3	89.00	6.67	32.33	18.67	31.33
.............................................................................................................TATCACAGCCAGCTTTGAGTAGCG..............................	24	1	264.00	52.00	56.00	70.00	86.00
.............................................................................................................TATCACAGCCAGCTTCGAGGAGCG..............................	24	1	258.00	26.00	49.00	33.00	150.00
.............................................................................................................TAGCACAGCCAGCTTTGAGGAG................................	22	3	86.00	0.33	46.67	29.00	10.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAGC...............................	23	3	85.67	0.33	6.33	23.33	55.67
.............................................................................................................TATCACAGCCAGCTTTGAGG..................................	20	4	64.25	12.25	26.75	24.50	0.75
.............................................................................................................CATCACAGCCAGCTTTGAGGAGCG..............................	24	1	256.00	26.00	42.00	23.00	165.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAGCG..............................	24	1	250.00	4.00	67.00	18.00	161.00
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	3	82.67	7.00	47.33	23.67	4.67
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	3	82.33	13.33	33.67	20.67	14.67
.............................................................................................................TATCACAGCCAGCTTTGAGGCGC...............................	23	4	60.75	0.50	5.25	16.50	38.50
.............................................................................................................TATCACAGTCAGCTTTGAGGAGCG..............................	24	1	239.00	18.00	38.00	15.00	168.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	3	77.67	29.00	20.00	8.67	20.00
................................................................TTCTTCAAAGTGGTTGTGAAATT............................................................................	23	1	232.00	7.00	69.00	85.00	71.00
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	3	77.00	15.67	26.67	21.00	13.67
...............................................................................................................TCACAGCCAGCTTTGATGAGCCA.............................	23	3	76.00	6.00	7.00	4.00	59.00
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	3	73.33	3.00	17.00	9.67	43.67
...............................................................................................................TCACAGCCAGCTTTGATGAGA...............................	21	4	54.00	3.50	28.75	15.75	6.00
.............................................................................................................TATCACAGCCAGCTTTTAGGAG................................	22	3	72.00	8.67	13.00	42.00	8.33
.............................................................................................................TATCACAGCCCGCTTTGCGGAGCG..............................	24	1	216.00	0.00	3.00	36.00	177.00
.............................................................................................................TATCACAGCCAGCTTTAAGGAGCG..............................	24	1	201.00	15.00	28.00	35.00	123.00
.............................................................................................................TATCACAGCCAGCTTTTAGGAGCG..............................	24	1	199.00	28.00	36.00	58.00	77.00
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	3	66.00	13.00	23.00	15.33	14.67
.............................................................................................................TATCACAGCCAGCTTTGAGTAGC...............................	23	3	65.00	12.67	17.33	21.00	14.00
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	4	47.25	2.50	22.75	13.25	8.75
.............................................................................................................TATCACAGACAGCTTTGAGGAGC...............................	23	3	62.33	0.67	8.00	2.00	51.67
...............................................................................................................TCACAGCCAGCTTTGATGAGCAA.............................	23	4	46.50	19.50	3.00	2.25	21.75
.............................................................................................................TATCACAGCTAGCTTTGAGGAGCG..............................	24	1	185.00	26.00	37.00	16.00	106.00

droGri2

GtGtGtGt-----------------------------------------GtGtGtATTGTGTCCTTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGAT-GCTCAAC--------ACAAAAA	Size	Hit Count	Total Norm	V109 Male body
.............................................................................................................TATCACAGCCAGCTTTGAGGAG................................	22	3	5339.33	5339.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGC...............................	23	3	2850.67	2850.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCG..............................	24	1	6335.00	6335.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGC...............................	23	4	386.00	386.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGT.............................	25	2	445.50	445.50
.............................................................................................................TATCACAGCCAGCTTTGATGAG................................	22	4	170.25	170.25
...............................................................................................................TCACAGCCAGCTTTGATGAGC...............................	21	4	121.50	121.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCT..............................	24	3	161.67	161.67
................................................................TTCTTCAAAGTGGTTGTGAAATG............................................................................	23	1	355.00	355.00
.............................................................................................................TATCACAGCCAGCTTTGAGGA.................................	21	3	115.33	115.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGT...............................	23	3	93.33	93.33
................................................................TTCTTCAAAGTGGTTGTGAAAT.............................................................................	22	1	224.00	224.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGA...............................	23	3	68.67	68.67
.............................................................................................................TATCACAGCCAGCTTTGCGGAG................................	22	3	62.67	62.67
.............................................................................................................TATCACAGCCAGCTTTGATGAGCA..............................	24	4	41.75	41.75
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCA..............................	24	4	33.75	33.75
.............................................................................................................TATCACAGCCAGCTTTGCGGAGC...............................	23	3	40.00	40.00
................................................................TTCTTCAAAGTGGTTGTGAAA..............................................................................	21	1	114.00	114.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAG................................	22	3	36.67	36.67
.............................................................................................................TATCACAGCCAGCTTTGTGGAG................................	22	3	33.67	33.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCTT.............................	25	3	33.33	33.33
................................................................TTCTTCAAAGTGGTTGTGA................................................................................	19	1	91.00	91.00
.............................................................................................................TATCACAGCCAGCTTTGATGA.................................	21	4	20.75	20.75
...............................................................................................................TCACAGCCAGCTTTGATGAG................................	20	4	20.50	20.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAA................................	22	3	27.00	27.00
.............................................................................................................TATCACAGCCAGCTTTGCGGAGCG..............................	24	1	79.00	79.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGC...............................	23	3	22.00	22.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGTG..............................	24	1	58.00	58.00
.............................................................................................................TACCACAGCCAGCTTTGAGGAG................................	22	3	18.33	18.33
.............................................................................................................TATCAAAGCCAGCTTTGAGGAG................................	22	3	18.33	18.33
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGA.............................	25	1	54.00	54.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAGC...............................	23	3	17.33	17.33
.............................................................................................................TATCACAGTCAGCTTTGAGGAG................................	22	3	16.00	16.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAGG...............................	23	3	16.00	16.00
.............................................................................................................TATCACAGCCAGCTTTGGGGAGCG..............................	24	1	48.00	48.00
................................................................TTCTTCAAAGTGGTTGTGAA...............................................................................	20	1	43.00	43.00
.............................................................................................................TATCACAGCCAGCTTTGTGGAGCG..............................	24	1	43.00	43.00
.............................................................................................................TATCACCGCCAGCTTTGAGGAG................................	22	3	14.33	14.33
...............................................................................................................TCACAGCCAGCTTTGATGAGCA..............................	22	4	10.25	10.25
...............................................................................................................TCACAGCCAGCTTTGATGAGCTAC............................	24	3	13.33	13.33
.............................................................................................................TATCACCGCCAGCTTTGAGGAGC...............................	23	3	13.33	13.33
.............................................................................................................TATCACAGCCAGCTTTGAGGCG................................	22	4	9.50	9.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGAG..............................	24	1	37.00	37.00
.............................................................................................................TATCACAGACAGCTTTGAGGAGC...............................	23	3	11.67	11.67
.............................................................................................................TATCACAGACAGCTTTGAGGAG................................	22	3	11.67	11.67
.............................................................................................................TAACACAGCCAGCTTTGAGGAG................................	22	3	11.67	11.67
.............................................................................................................TATCAAAGCCAGCTTTGAGGAGC...............................	23	3	11.67	11.67
.............................................................................................................TATCACAGCCAGCTTTGATG..................................	20	4	8.50	8.50
...............................................................................................................TCACAGCCAGCTTTGACGAGCT..............................	22	3	10.67	10.67
.............................................................................................................TATCACGGCCAGCTTTGAGGAG................................	22	3	9.67	9.67
.............................................................................................................TATCACAGTCAGCTTTGAGGAGC...............................	23	3	9.67	9.67
.............................................................................................................TATCACTGCCAGCTTTGAGGAG................................	22	3	9.67	9.67
.............................................................................................................TACCACAGCCAGCTTTGAGGAGC...............................	23	3	8.67	8.67
.............................................................................................................TACCACAGCCAGCTTTGAGGAGCG..............................	24	1	26.00	26.00
.............................................................................................................TATCACAGCCAGCTTTGAGGT.................................	21	4	6.25	6.25
.............................................................................................................TATCACAGCCAGCTTTGATGAGCC..............................	24	4	6.25	6.25
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCGTT............................	26	1	24.00	24.00
.............................................................................................................TATCACAGCCAGCTTTGACGAGCT..............................	24	3	8.00	8.00
...............................................................................................................TCACAGCCAGCTTTGATGAGCC..............................	22	4	6.00	6.00
.............................................................................................................TATCAGAGCCAGCTTTGAGGAG................................	22	3	8.00	8.00
.............................................................................................................TATCACAGGCAGCTTTGAGGAG................................	22	3	7.67	7.67
.............................................................................................................TATCACACCCAGCTTTGAGGAG................................	22	3	7.67	7.67
.............................................................................................................TATCACCGCCAGCTTTGAGGAGCG..............................	24	1	23.00	23.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAC................................	22	3	7.67	7.67
.............................................................................................................TATCACAGACAGCTTTGAGGAGCG..............................	24	1	22.00	22.00
.............................................................................................................TATCACAGCCAGCTTTGAGCAG................................	22	3	7.33	7.33
.............................................................................................................TATCACAGCCAGCTTTGCTGAGC...............................	23	4	5.50	5.50
.............................................................................................................TATCACAGCCAGCTTTGAGGAGGG..............................	24	1	22.00	22.00
.............................................................................................................TATCACAGCCACCTTTGAGGAG................................	22	3	7.00	7.00
.............................................................................................................TATCATAGCCAGCTTTGAGGAG................................	22	3	7.00	7.00
.............................................................................................................TATCACAGCCAGATTTGAGGAG................................	22	3	7.00	7.00
.............................................................................................................TATCACAGCCAGCTTTGATGAGT...............................	23	4	5.25	5.25
.............................................................................................................TATCACAGCCAGCTTTGAGGACC...............................	23	3	7.00	7.00
.............................................................................................................TATCACAGCCAGCTTTGAGGAT................................	22	3	6.33	6.33
.............................................................................................................TATCACAGCCAGCCTTGAGGAG................................	22	3	6.00	6.00
.................................................................................................................ACAGCCAGCTTTGAGGAG................................	18	3	6.00	6.00
.............................................................................................................TATCACAGTCAGCTTTGAGGAGCG..............................	24	1	18.00	18.00
.............................................................................................................TATCACAGCCAGCTTTGACGAG................................	22	4	4.25	4.25
.............................................................................................................TATCGCAGCCAGCTTTGAGGAG................................	22	3	5.67	5.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAAC...............................	23	3	5.67	5.67
.............................................................................................................TATCACAGCCAGCTTTGATGAGA...............................	23	4	4.25	4.25
.............................................................................................................TATCATAGCCAGCTTTGAGGAGC...............................	23	3	5.67	5.67
.............................................................................................................TATCACAGCCAGCCTTGAGGAGC...............................	23	3	5.33	5.33
.............................................................................................................TATCACATCCAGCTTTGAGGAG................................	22	3	5.33	5.33
.............................................................................................................TATCACAGCCAGCTTTGAGGCGCG..............................	24	1	16.00	16.00
.............................................................................................................TATCACAGGCAGCTTTGAGGAGC...............................	23	3	5.33	5.33
.............................................................................................................TAACACAGCCAGCTTTGAGGAGC...............................	23	3	5.33	5.33
.............................................................................................................TATCACAGCCAGCTTTGAAGAG................................	22	4	3.75	3.75
.............................................................................................................TATCACAGCCAGCxTTGAGGAG................................	21	3	5.00	5.00
.............................................................................................................TATCACAGCCCGCTTTGAGGAG................................	22	3	5.00	5.00
.............................................................................................................TATCACAGCCATCTTTGAGGAG................................	22	3	5.00	5.00
.................................................................TCTTCAAAGTGGTTGTGAAATG............................................................................	22	1	15.00	15.00
.................................................................................................................ACAGCCAGCTTTGAGGAGCG..............................	20	1	15.00	15.00
.............................................................................................................TATCACGGCCAGCTTTGAGGAGCG..............................	24	1	15.00	15.00
.............................................................................................................TATCAAAGCCAGCTTTGAGGAGCG..............................	24	1	15.00	15.00
.............................................................................................................TCTCACAGCCAGCTTTGAGGAG................................	22	3	4.67	4.67
.............................................................................................................TATCACGGCCAGCTTTGAGGAGC...............................	23	3	4.67	4.67
.............................................................................................................TATCACAGCCAGCTTTAAGGAG................................	22	3	4.67	4.67
.............................................................................................................TATCACAGCCAGCTTCGAGGAG................................	22	3	4.67	4.67
.............................................................................................................TATCACAGCCAGCTTTGAGGAGCC..............................	24	3	4.33	4.33
.............................................................................................................TGTCACAGCCAGCTTTGAGGAGC...............................	23	3	4.33	4.33

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image