Possible Orthologs for dme-mir-287

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2L:17277816-17277938 +	95.97	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AAGCTCACTCACAGAGGACGCCGTGGATGTATGGGTGTGTAGGGTCGGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..................................................................................TTTGAAAATGGTTTGCAC....................... 18 1 1.00 0.00 0.00 1.00 0.00 ...........................TGTATGTGTGTGTAGGTTC............................................................................. 19 1 1.00 0.00 0.00 1.00 0.00 ....................................................................................TGAAAATGGTTTGCACGC..................... 18 1 1.00 1.00 0.00 0.00 0.00 ..................................................................CAAAAATTGTACATGTGT....................................... 18 2 0.50 0.50 0.00 0.00 0.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_7:1215433-1215555 +	95.97	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AAGCTCACTCACAGAGGACGCCGTGGATGTATGGGTGTGTAGGGTCGGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..................................................................CAAAAATTGTACATGTGT....................................... 18 2 1.00 0.00 1.00 0.00 ......................GTGTATGTGTGGGTGTGT................................................................................... 18 1 1.00 0.00 1.00 0.00 ....................................................................................TGAAAATGGTTTGCACGC..................... 18 1 1.00 0.00 1.00 0.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:3525115-3525236 -	85.69	AAGC----CCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA A--CATATATACACACAGAGCAAGCCGTGGATGTATGGGTGT---GGGTCTGAAATTTTGCACACATTTACAGTAATTGTAAATGTGTTGAAAATCGTTTGCATGACTGTGAGCAAAACACTTCGGA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...........................TGGGTGGATGGGTGT---GGG............................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 0.00 ..........................GTGGGTGTGTGGGTGT---GGGT.............................................................................. 20 3 0.33 0.00 0.00 0.33 0.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_4845:6676077-6676186 -	76.13	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA GT-----------GTGGACGCTG--GATGTATGGGTGTGTGGGCTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGCGAGCAAAACACGTCGGA Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ............................................................TATTTACAACAATTGTAA............................................. 18 1 1.00 0.00 0.00 0.00 1.00 ....................................................................AAAATTGTACATGTGTTGA.................................... 19 1 1.00 1.00 0.00 0.00 0.00 ................GACGCxG--GATGGATGGGTG...................................................................................... 18 1 1.00 1.00 0.00 0.00 0.00 ..................................................................CAAAAATTGTACATGTGT....................................... 18 1 1.00 1.00 0.00 0.00 0.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000453855:358907-359016 +	74.7	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA A----CACT------GGGCGCTGGG--TGTATGGGT--GTAAGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAACACGTCCGA Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409016:198057-198168 +	73.75	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AA-----------TAAAGTGCTCTAGATGTATGGGTGTATAGGGTCTGAAATTTTGCACACATTTACAATTATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAGCACGTCGGT Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302422:6132274-6132381 -	72.57	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA CGGGGCGCT---------------GGTTGTGTGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000415617:9738-9849 -	78.31	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA -----CACT-----GGGGCGCTG--GTTGTATGGGTGTGTGGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000491046:278921-279029 +	73.97	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA G----------CACGGGGCACTG--GGTGTATGGGT--GTAAGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000777709:31207-31296 +	49.63	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA ----------------------------------GGTTGTAAGGTCTGAAATTTTGCACACATTTACAATTATTGTAAATGTGTTGAAAATCGCTTGCACAACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm

droKik1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000302246:110146-110268 -	82.51	AAGCCCACTCACAGAGGACGCCGGGG-ATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AGGACGAC-GACAACGAAGGCCAGTGCGTTTGTGTGGGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAGACATGTCGGA Size Hit Count Total Norm
2	scf7180000302577:788700-788817 +	35.2	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAA----------TGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA ATCTGTATCTGTAG-------------TGTATTTGTGTTTTGTATTTTGTGTTTTATGTGTTGCTTCTTCGATTTGAAAGTCCCAAAAACCCTCTAAGATCTGCTTGGTCAAAAGTGCGAAAGTCAA--CCCC Size Hit Count Total Norm

droAna3 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_12916:3302442-3302546 -	64.56	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTA--GGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AT--------------------AGGGCTGTGTGTATTGGTAGTGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAGCACGTCGGA Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ...........................................................................TGAAAATGCGTTGAAAAT................................ 18 2 0.50 0.00 0.00 0.00 0.50 ....................................................................................GTTGAAAATAGTATGCACA...................... 19 2 0.50 0.50 0.00 0.00 0.00 ........................................................................AAGTGTAAATxTGTTGAAAA................................. 19 2 0.50 0.00 0.50 0.00 0.00
1	scaffold_12916:3302414-3302538 +	51.21	AAGCCCACTCACAGAGG---------ACGCCGGGGAT------GTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA ACATACACACAAAGAGAGTGATTTCTACTCCGACGTGCTTTGCTCACAGTTGTGCAAA-----CGATTTTCAACACATTTACAATTATTGTAAATGTGTGCAAAAT----TTCAGACCCACTACCAATACACAC---- Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ACATACACACAAAGAGGGA....................................................................................................................... 19 2 0.50 0.00 0.00 0.00 0.50
2	scaffold_13335:1887826-1887958 +	40.74	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGT-------CTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGG-----------A GAGCGCACGTGTATGTGT--------TTGTGTGTGTGTGTTTGGGTGACAGACTGCGTGCGTGCTTATCTCCATGCTATGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTAAGCCAACCACAGCAGCCTGCTCTCGTT Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ..............................................................................................CGTGTGTGTGAATGTGTG............................. 18 1 30.00 7.00 20.00 3.00 0.00 ................................................................................TGTGTGTGTCTGTGTGTGTGA........................................ 21 5 2.80 0.00 2.80 0.00 0.00 ....................................................................................TGTGTGTGTCTGTGTGTGTGA.................................... 21 5 2.80 0.00 2.80 0.00 0.00 ..............................................................................TGTGTGTGTCTGTGTGTGTGA.......................................... 21 5 2.80 0.00 2.80 0.00 0.00 ..................................................................................TGTGTGTGTCTGTGTGTGTGA...................................... 21 5 2.80 0.00 2.80 0.00 0.00 .............AGTGT--------GTGTGTGTGTGTG...................................................................................................... 18 27 0.41 0.04 0.37 0.00 0.00 ............................................................................TGTGTGTGTGTGTGTGTGTGTGTG......................................... 24 4 2.75 0.00 2.75 0.00 0.00 ....................................................................................AGTGTGTGTGTGTGTGTG....................................... 18 27 0.41 0.04 0.37 0.00 0.00 ................................................................................AGTGTGTGTGTGTGTGTG........................................... 18 27 0.41 0.04 0.37 0.00 0.00 ..............................................................................AGTGTGTGTGTGTGTGTG............................................. 18 27 0.41 0.04 0.37 0.00 0.00 ................................................................................TGTGTGTGTGTGTGTGTGTGTGTG..................................... 24 4 2.75 0.00 2.75 0.00 0.00 ............................................................................AGTGTGTGTGTGTGTGTG............................................... 18 27 0.41 0.04 0.37 0.00 0.00 ..................................................................................AGTGTGTGTGTGTGTGTG......................................... 18 27 0.41 0.04 0.37 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGTGTGTGTGTG....................................... 24 4 2.75 0.00 2.75 0.00 0.00 ......................................................................................AGTGTGTGTGTGTGTGTG..................................... 18 27 0.41 0.04 0.37 0.00 0.00 .................................................................................GTGTGTGTGTGTGTGTGT.......................................... 18 20 0.50 0.00 0.50 0.00 0.00 .............................................................................GTGTGTGTGTGTGTGTGT.............................................. 18 20 0.50 0.00 0.50 0.00 0.00 .....................................................................................GTGTGTGTGTGTGTGTGT...................................... 18 20 0.50 0.00 0.50 0.00 0.00 .................................................................................GTGTGTGTGTGTGTGTGAGTGTGTA................................... 25 2 5.00 0.00 5.00 0.00 0.00 .......................................................................................GTGTGTGTGTGTGTGTGT.................................... 18 20 0.50 0.00 0.50 0.00 0.00 ...............................................................................GTGTGTGTGTGTGTGTGAGTGTGTA..................................... 25 2 5.00 0.00 5.00 0.00 0.00 ...............................................................................GTGTGTGTGTGTGTGTGT............................................ 18 20 0.50 0.00 0.50 0.00 0.00 ..............GTGT--------GTGTGTGTGTGTGT..................................................................................................... 18 20 0.50 0.00 0.50 0.00 0.00 ...................................................................................GTGTGTGTGTGTGTGTGT........................................ 18 20 0.50 0.00 0.50 0.00 0.00 .............................................................................GTGTGTGTGTGTGTGTGTGTGTGTG....................................... 25 2 4.00 0.00 4.00 0.00 0.00 ..................................................................................TGTGTGTGTGTGTGTGTGTGTG..................................... 22 8 1.00 0.00 1.00 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGTGTGTGTG......................................... 22 8 1.00 0.00 1.00 0.00 0.00 ................................................................................AGTGTGTGTGTGTGTGTGT.......................................... 19 22 0.36 0.00 0.36 0.00 0.00 ....................................................................................AGTGTGTGTGTGTGTGTGT...................................... 19 22 0.36 0.00 0.36 0.00 0.00 ..................................................................................AGTGTGTGTGTGTGTGTGT........................................ 19 22 0.36 0.00 0.36 0.00 0.00 .............................................................................GTGTGTGTGTGTGTGTGTGTGTG......................................... 23 4 2.00 0.25 1.75 0.00 0.00 .................................................................................GTGTGTGTGTGTGTGTGTGTGTG..................................... 23 4 2.00 0.25 1.75 0.00 0.00 ......................................................................................AGTGTGTGTGTGTGTGTGT.................................... 19 22 0.36 0.00 0.36 0.00 0.00 ...............................................................................GTGTGTGTGTGTGTGTGTGTGTGTG..................................... 25 2 4.00 0.00 4.00 0.00 0.00 ................................................................................TGTGTGTGTGTGTGTGTGTGTG....................................... 22 8 1.00 0.00 1.00 0.00 0.00 ...............................................................................GTGTGTGTGTGTGTGTGTGTGTG....................................... 23 4 2.00 0.25 1.75 0.00 0.00 ............................................................................TGTGTGTGTGTGTGTGTGTGTG........................................... 22 8 1.00 0.00 1.00 0.00 0.00 ..............................................................................AGTGTGTGTGTGTGTGTGT............................................ 19 22 0.36 0.00 0.36 0.00 0.00 ............................................................................AGTGTGTGTGTGTGTGTGT.............................................. 19 22 0.36 0.00 0.36 0.00 0.00 .............AGTGT--------GTGTGTGTGTGTGT..................................................................................................... 19 22 0.36 0.00 0.36 0.00 0.00 ....................................................................................TGTGTGTGTGTGTGTGTG....................................... 18 23 0.30 0.00 0.30 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGTGTG............................................. 18 23 0.30 0.00 0.30 0.00 0.00 ............................................................................TGTGTGTGTGTGTGTGTG............................................... 18 23 0.30 0.00 0.30 0.00 0.00 ................................................................................TGTGTGTGTGTGTGTGTG........................................... 18 23 0.30 0.00 0.30 0.00 0.00 ...................................................................................GTGTGTGTGAATGTGTGT........................................ 18 9 0.78 0.22 0.33 0.22 0.00 .................................................................................GTGTGTGTGAATGTGTGT.......................................... 18 9 0.78 0.22 0.33 0.22 0.00 ...............................................................................GTGTGTGTGTGTGTGTGTGTGTGC...................................... 24 3 2.33 0.33 2.00 0.00 0.00 ...............................................................................................GTGTGTGTGAATGTGTGT............................ 18 9 0.78 0.22 0.33 0.22 0.00 .....................................................................................GTGTGTGTGAATGTGTGT...................................... 18 9 0.78 0.22 0.33 0.22 0.00 .............TGTGT--------GTGTGTGTGTGTG...................................................................................................... 18 23 0.30 0.00 0.30 0.00 0.00 .................................................................................GTGTGTGTGTGTGTGTGTGTGTGC.................................... 24 3 2.33 0.33 2.00 0.00 0.00 ..................................................................................TGTGTGTGTGTGTGTGTG......................................... 18 23 0.30 0.00 0.30 0.00 0.00 ......................................................................................TGTGTGTGTGTGTGTGTG..................................... 18 23 0.30 0.00 0.30 0.00 0.00 ...............................................................................GTGTGTGTGAATGTGTGT............................................ 18 9 0.78 0.22 0.33 0.22 0.00 ................................................................................TGTGTGTGTGTGTGAGTGTGTGTGC.................................... 25 4 1.50 0.00 1.50 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGAGTGTGTGTGC...................................... 25 4 1.50 0.00 1.50 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGTGTGT............................................ 19 19 0.32 0.00 0.32 0.00 0.00 ................................................................................TGTGTGTGTGTGTGTGTGT.......................................... 19 19 0.32 0.00 0.32 0.00 0.00 ............................................................................TGTGTGTGTGTGTGTGTGT.............................................. 19 19 0.32 0.00 0.32 0.00 0.00 ...................................................................................GTGTGTGTGTGTGTGTGTGTG..................................... 21 8 0.75 0.00 0.75 0.00 0.00 .............TGTGT--------GTGTGTGTGTGTGT..................................................................................................... 19 19 0.32 0.00 0.32 0.00 0.00 .............................................................................GTGTGTGTGTGTGTGTGTGTG........................................... 21 8 0.75 0.00 0.75 0.00 0.00 ...............................................................................GTGTGTGTGTGTGTGTGTGTG......................................... 21 8 0.75 0.00 0.75 0.00 0.00 .................................................................................GTGTGTGTGTGTGTGTGTGTG....................................... 21 8 0.75 0.00 0.75 0.00 0.00 ..............................................................................................CGTGTGTGTGAATGTGTGT............................ 19 1 6.00 2.00 3.00 1.00 0.00 ..................................................................................TGTGTGTGTGTGTGTGTGT........................................ 19 19 0.32 0.00 0.32 0.00 0.00 ......................................................................................TGTGTGTGTGTGTGTGTGT.................................... 19 19 0.32 0.00 0.32 0.00 0.00 ....................................................................................TGTGTGTGTGTGTGTGTGT...................................... 19 19 0.32 0.00 0.32 0.00 0.00 ...............................................................................GTGTGTGTGTGTGTGTTG............................................ 18 12 0.42 0.00 0.42 0.00 0.00 ....................................................................................TGTGTGTGTGTGTGTGTGTG..................................... 20 15 0.33 0.00 0.33 0.00 0.00 ...................................................................................GTGTGTGTGTGTGTGTTG........................................ 18 12 0.42 0.00 0.42 0.00 0.00 .....................................................................................GTGTGTGTGTGTGTGTTG...................................... 18 12 0.42 0.00 0.42 0.00 0.00 .......................................................................................GTGTGTGTGTGTGTGTTG.................................... 18 12 0.42 0.00 0.42 0.00 0.00 ............................................................................TGTGTGTGTGTGTGTGTGTG............................................. 20 15 0.33 0.00 0.33 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGTGTGTG........................................... 20 15 0.33 0.00 0.33 0.00 0.00 .............................................................................GTGTGTGTGTGTGTGTGTGTGTGCG....................................... 25 4 1.25 0.00 1.25 0.00 0.00 .................................................................................GTGTGTGTGTGTGTGTGTGTGTGCG................................... 25 4 1.25 0.00 1.25 0.00 0.00 ................................................................................TGTGTGTGTGTGTGTGTGTG......................................... 20 15 0.33 0.00 0.33 0.00 0.00 ...............................................................................GTGTGTGTGTGTGTGTGTGTGTGCG..................................... 25 4 1.25 0.00 1.25 0.00 0.00 .................................................................................GTGTGTGTGTGTGTGTTG.......................................... 18 12 0.42 0.00 0.42 0.00 0.00 ..................................................................................TGTGTGTGTGTGTGTGTGTG....................................... 20 15 0.33 0.00 0.33 0.00 0.00 ................GT--------GTGTGTGTGTGTGTTG................................................................................................... 18 12 0.42 0.00 0.42 0.00 0.00 ...............................................................................ATGTGTGTGxGTGTGTGTGTGT........................................ 21 14 0.29 0.00 0.29 0.00 0.00 ......................................................................................TGTGTGTGTGTGTGTGTGCA................................... 20 3 1.33 0.00 1.33 0.00 0.00 .................................................................................ATGTGTGTGxGTGTGTGTGTGT...................................... 21 14 0.29 0.00 0.29 0.00 0.00 ..................................................................................TGTGTGTGTGTGTGGGTG......................................... 18 32 0.09 0.00 0.09 0.00 0.00 ...............................................................................GTGGGTGTGTGGGTGTGT............................................ 18 7 0.43 0.14 0.29 0.00 0.00 .......................................................................................GTGTGTGTGTGTGTGTGC.................................... 18 8 0.38 0.00 0.38 0.00 0.00 ...............................................................................................GTGTGTGTGAATGTGTGA............................ 18 1 3.00 2.00 1.00 0.00 0.00 ................................................................................TGTGTGTGTGTGTGTGTGTGT........................................ 21 10 0.30 0.00 0.20 0.10 0.00 .............................................................................GTGTGTGTGTGTGTGTGTGT............................................ 20 10 0.30 0.00 0.30 0.00 0.00 ................................................................................TGTGTGTGTGTGTGAGTGTGTGTG..................................... 24 5 0.60 0.00 0.60 0.00 0.00 ..........................................................................GGTGTGTGTGTGTGTGTGT................................................ 19 21 0.14 0.05 0.10 0.00 0.00 ............................................................................GGTGTGTGTGTGTGTGTGT.............................................. 19 21 0.14 0.05 0.10 0.00 0.00 .....................................................................................GTGTGTGTGTGTGTGTGTGT.................................... 20 10 0.30 0.00 0.30 0.00 0.00 ...............................................................................GTGTGTGTGTGTGAGTGTGTGTGCG..................................... 25 4 0.75 0.00 0.75 0.00 0.00 ......................................................................................TGTGTGTGTGTGTGTGTT..................................... 18 10 0.30 0.00 0.30 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGTGTGC............................................ 19 8 0.38 0.00 0.38 0.00 0.00 ..............................................................................TGTGTGTGTGTGTGGGTG............................................. 18 32 0.09 0.00 0.09 0.00 0.00 ..................................................................................TGTGTGTGTGTGAGTGTGTGTGCG................................... 24 5 0.60 0.00 0.60 0.00 0.00 ................................................................................TGTGTGTGTGTGTGGGTG........................................... 18 32 0.09 0.00 0.09 0.00 0.00

droBip1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000396737:1470812-1470916 +	64.56	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTA--GGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AT--------------------AGGGCTGTGTGTATTGGTAGTGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAGCACGTCGGA Size Hit Count Total Norm
4	scf7180000396712:2233699-2233710 -	4.96	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AAAGGAGCTGCA--------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None

dp4 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr4_group3:10858860-10858990 -	71.92	AAGCCCAC------------TCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA ACACACACACATAAATATATTCACGGAGACAGTCT----TATGTGTGAGTGTGGGGCCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body
2	chr4_group3:10858892-10858957 +	35.87	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA A--------------------------------------------------TTTTCAACACATTTACAATTATTGTAAATGTGTGCAAAATTTCAGGCCCCACACTCACACATAAG------- Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body .....................................................................TTATTGTGTATGTGTGCA.................................... 18 2 0.50 0.00 0.50 0.00 0.00
1	chr3:10128817-10128906 +	32.65	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAA---------CACGTCGGA A---CCACGCACTT--------GTGTGTGTGTGTGTGTGTGTATCCCAGA-------------------------------CATTAATATTTGTTCTTTCGGCTCTTGGCAACGCGCCCTTAACGCATTTTT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ......................GTACGTGTGTGTGTGTGTG........................................................................................... 19 46 0.11 0.04 0.04 0.02 0.00 ........GTACGT--------GTGTGTGTGTGTG................................................................................................. 19 46 0.11 0.04 0.04 0.02 0.00 .............T--------GTGTGTGTGTGTGTGTGTGTG......................................................................................... 22 49 0.08 0.00 0.00 0.08 0.00 .......................TTTGTGTGTGTGTGTGTG........................................................................................... 18 49 0.06 0.02 0.02 0.02 0.00 .............T--------GTGTGTGTGTGTGTGTGT............................................................................................ 19 35 0.09 0.03 0.00 0.06 0.00 ...........TTT--------GTGTGTGTGTGTGTG............................................................................................... 18 49 0.06 0.02 0.02 0.02 0.00 .......................TGTGTGTGTGTGTGTGTGT.......................................................................................... 19 35 0.09 0.03 0.00 0.06 0.00 .............T--------TTGTGTGTGTGTGTGTG............................................................................................. 18 49 0.06 0.02 0.02 0.02 0.00

droPer1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	super_8:2069946-2070076 -	71.92	AAGCCCAC------------TCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA ACACACACACATAAATATATTCACGGAGACC--TGCTTATGTGTGAGTGTG--GGGCCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAACACGTCGGA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ..............................C--TGCTTGTGTGTGTGTGTG--.................................................................................. 19 8 0.25 0.00 0.00 0.00 0.00 0.25 ..............................C--TGTGTATGTGTGAGTGT..................................................................................... 18 7 0.14 0.14 0.00 0.00 0.00 0.00 ....................................................................................GTGTAAATxTGTTGAAAAT................................ 18 3 0.33 0.00 0.00 0.00 0.00 0.33
1	super_8:2069916-2070042 +	48.36	AAGCCCACTCACAGAGGACGCCGGGGATGTATGG------GTGTGT---------------AGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA C-----ACACACAGAGAGAGAGAGTGATTTCTACTCCGACGTGTTTTGCTCACAGTTGTGCA-----AACGATTTTCAACACATTTACAATTATTGTAAATGTGTGCAAAATTTCAGGCCCCACACTCACACA--------TAA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo C-----ACAxGCAGAGAGAGAGAC........................................................................................................................ 18 7 0.43 0.00 0.00 0.00 0.00 0.43 ......ACACGCAGAGAGCGAGAGT....................................................................................................................... 19 1 2.00 2.00 0.00 0.00 0.00 0.00 .......CAGATAGAGAGAGAGAGTGA..................................................................................................................... 20 14 0.07 0.07 0.00 0.00 0.00 0.00 C-----ACACAATGAGAGAGAGA......................................................................................................................... 18 6 0.17 0.00 0.17 0.00 0.00 0.00 ...............................................................................................GTAAATGTGxGCAAAATGT.............................. 18 4 0.25 0.25 0.00 0.00 0.00 0.00 .....................................................................................................GTGAGCAAAATTTGAGGC......................... 18 3 0.33 0.00 0.00 0.00 0.33 0.00
4	super_8:2069943-2070064 -	46.23	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA--- AAATATATTCACGGAGA-C-CTGCTTATGTGTGAGTGTG--GGGCCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAAACACGTCGGAGTA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ....................CTGCTTGTGTGTGTGTGTG--..................................................................................... 19 8 0.25 0.00 0.00 0.00 0.00 0.25 ..........................................................................................................GAGxAAAACACGTCGGAGT. 18 2 1.00 0.00 0.00 0.00 0.00 1.00 ....................CTGTGTATGTGTGAGTGT........................................................................................ 18 7 0.14 0.14 0.00 0.00 0.00 0.00 ........................................................................GTGTAAATxTGTTGAAAAT................................... 18 3 0.33 0.00 0.00 0.00 0.00 0.33
2	super_2:3490396-3490446 -	24.4	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTG--TTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA A--------------------------------------------------------------------TAATTCAAAACGTGGCTGGGAAAATGTTTGCCCTGCCCTG------GCATGTGGGT Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo

droWil1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	scaffold_180764:928810-928950 -	61.47	AAGCCCACTCACAGAGGA--------CGCCGG-GGATGTATGGGTG----TGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGTGAGCAAAACAC----GTCGGA ACTCCCACATACATTGGAAAGAGCTTCTCCGTAATATGTATATGTATTGCTGTAAAGTCTGAAATTTTGCACACATTTACAATTATTGTAAATGTGTTGAAAATCGTTTGCACAAACTGTGAGCAAAATCCTGTAGCTGGG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ............................................................................TTACAATTxTTGGAAATGTG............................................. 19 1 1.00 0.00 1.00 0.00 0.00 ...................................................................................GATTGTAAATGTGTGGAA........................................ 18 2 0.50 0.00 0.50 0.00 0.00 ...................................................................................................ATAATCGTTTGCACAAAA........................ 18 1 1.00 0.00 1.00 0.00 0.00 .........................................................TCTGATATTTTGCACACC.................................................................. 18 1 1.00 0.00 0.00 0.00 1.00 ..................................................................................................AATAATCGTTTGCACAAA......................... 18 1 1.00 0.00 0.00 0.00 1.00 ........................................................................................AAAATGTGTTGATAATCGT.................................. 19 1 1.00 1.00 0.00 0.00 0.00 ....................................................................................ATTGTAAATGTATTGAAT....................................... 18 1 1.00 0.00 1.00 0.00 0.00
3	scaffold_180701:2615453-2615572 -	40.62	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACAT------------------TTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA GAG-------------AAAGAAGAGAGTGGGAGAATTGTTAGGGTCAGTTATTCTCTATCTATCTCTCTCTCTTTCGCTCAGTATAGTGCGTGTGTATTTTTCGGTCAGT---------TTTGTAATTGAATCACGTTTTG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head .....................................................................CTCTTTAGCTCAGTGTAG...................................................... 18 1 11.00 5.00 4.00 2.00 0.00 ..................AGAATAxAGTGGGAGAATT........................................................................................................ 18 1 2.00 2.00 0.00 0.00 0.00 ..........................................................TCTCTCTCTCTCTCTTTCGCT.............................................................. 21 19 0.05 0.00 0.00 0.05 0.00

droVir3 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_12963:16502531-16502646 +	66.25	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA AGATTGACTCCCACGCTTTCGCACACACACAAACGTGCATAATGTTTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAA-------CCGA Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head .....................CACACACACAACCGGGCA.................................................................................... 18 2 0.50 0.00 0.00 0.00 0.00 0.50
8	scaffold_13324:1567734-1567853 +	48.76	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGA-----AATTTTGCACACAT---------TTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGAC-TGTGAGCAAAACACGTCGGA CAC------------------CACGCACCTTTTGGTGTCTCAGGCCTGTCTCGGTTCCCTGCACACGTGCACTAACGTCACTTTAATTTCACAGGTTTATTTGGTTATTTTCACGGAGCAGTTGCAAATCGCGTCCGC Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ............................................................................................................TTTCACGGAGCAGTTGCAAATCGCG..... 25 1 2.00 0.00 0.00 2.00 0.00 0.00 .............................................................................................................TTCACGGAGCAGTTGCAAATCGCGTC... 26 1 2.00 0.00 0.00 1.00 1.00 0.00 ............................................................................................................TTTCACGGAGCAGTTACAAATC........ 22 1 1.00 0.00 0.00 0.00 1.00 0.00 .......................................TTAGGCCTGTCTCGGTTCCCTGCACACG....................................................................... 28 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................TAGGCCTGTCTCGGTTCCCTGCACACG....................................................................... 27 1 1.00 0.00 0.00 0.00 1.00 0.00 ............................................................................................................TTTCACGGAGCAGTTACAA........... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 .............................................................................................................TTCACGGAGCAGTTACAAATCGCGTTC.. 27 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................................................................TTCACGGAGCAGTTACAAATCGCCTCC.. 27 1 1.00 0.00 0.00 1.00 0.00 0.00 .............................................................................................................TTCACGGAGCAGTTACAAATCGCGTCC.. 27 1 1.00 0.00 0.00 0.00 1.00 0.00 ............................................................................................................TTTCACGGAGCAGTTACAAATCACGTCC.. 28 1 1.00 0.00 0.00 1.00 0.00 0.00 ......................................................................................TTTTAGAGGTTTATTTGGTT................................ 20 1 1.00 0.00 0.00 1.00 0.00 0.00 .............................................................................................................TTCACGGAGCAGTTACAAATCGC...... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 .............................................................................................................TTCACGGAGCAGTTACAAATCACGTCC.. 27 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................................................................TTCACGGAGCAGTTACAAATCGCGT.... 25 1 1.00 0.00 1.00 0.00 0.00 0.00 .............................................................................................................TTCACGGAGCAGTTGCAAATCGCGTCC.. 27 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................................................................GTTACAAATCGCGTCCGC 18 1 1.00 0.00 0.00 1.00 0.00 0.00 ...................................TGTCTTAGGCCTGTCTCGGTTCCCT.............................................................................. 25 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................................................................TTCACGGAGCAGTTGCAAATCGCG..... 24 1 1.00 0.00 0.00 1.00 0.00 0.00 .............................................................................................................TTCACGGAGCAGTTGCAAATC........ 21 1 1.00 0.00 0.00 0.00 1.00 0.00 .......................................................................................................................AGTTACAAATCGCGTCCG. 18 1 1.00 0.00 0.00 0.00 1.00 0.00
9	scaffold_12963:16502539-16502646 -	46.31	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAA----ATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATC-------GTTTGCACGACTGTGA----GCAAAACACGTCGGA TCGGTTGCTCACAGT-----------------------------TGTGCAAACGATTTTCAACACATTTACAATTATTGTAAATGTGTGCAAAATTTCAAACATTATGCACGTTTGTGTGTGTGCGAA-AGCGTGGGA Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ..................................................................................................................TGTGTGTGTGTGAA-ACCG..... 18 5 0.20 0.00 0.00 0.20 0.00 0.00 ..........................................................................TATTGAAATTGTGTGCAAA............................................. 19 2 0.50 0.00 0.00 0.50 0.00 0.00 ...............................................................................................................GTCTGTGTGAGTGCGAA-A........ 18 2 0.50 0.00 0.00 0.50 0.00 0.00 ................................................................................AAATGTGTGTAAAATATCA....................................... 19 2 0.50 0.00 0.50 0.00 0.00 0.00

droMoj3 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_6500:21428983-21429089 +	61.83	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA ACTCCCACGCACACA--------------CACACGCGCATAATGTTTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAACCAACAGC--A Size Hit Count Total Norm V110 Male body V056 Unknown V049 Head V041 Embryo ....................................................................................................................CAAC--A 20 3 0.33 0.00 0.00 0.33 0.00 ......ATACACACA--------------CACACGCGC..................................................................................... 18 29 0.03 0.03 0.00 0.00 0.00 ................................................................................GTGTTGAAAATxGGTTGCAC....................... 19 2 0.50 0.00 0.50 0.00 0.00
9	scaffold_6500:21428985-21429104 -	55.69	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCG-------TTTGCACGACTGTGAGCAAAACACGTCGGA ACACACACATACACATGCTGTTGGTTGCTCACAGTTGTGCAAAC-----GATTTTCAACACATTTACAATTATTGTAAATGTGTGCAAAATTTCAAACATTATGCGCGTGTGTGTGT-----GCGTGGGA Size Hit Count Total Norm V110 Male body V056 Unknown V049 Head V041 Embryo ..........................................................................GTAAATGTGTGCAAAAAGT..................................... 19 2 6.00 5.00 1.00 0.00 0.00 ....................................................................................................TATGCGTGTGTGTGTGT-----GCTT.... 21 7 0.29 0.14 0.00 0.14 0.00 ....................................................................................................TATGCGTGTGTGTGTGT-----GAGT.... 21 28 0.04 0.00 0.00 0.00 0.04 ........................................................................................................TGCGTGTGTGTGT-----GCGTG... 18 230 0.00 0.00 0.00 0.00 0.00 ...................................................................................................GTATGCGCGTGTGTGTGT-----G....... 19 20 0.05 0.00 0.00 0.05 0.00 ....................................................................................................TATGCGAGTGTGTGTGT-----GCGTGT.. 23 4 0.25 0.00 0.25 0.00 0.00 ..................................................................................................GTTATGTGCGTGTGTGTGT-----........ 19 9 0.11 0.11 0.00 0.00 0.00

droGri2 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
15	scaffold_15252:13917089-13917209 +	69.29	AAG------------CCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAA--AACACGTCGGA CAGTTTTCACTCCCACACACTCACAC----------------ACACATGCATAATGCTTGAAATTTTGCACACATTTACAATATTTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAGCAACACACATGT Size Hit Count Total Norm V109 Male body
1	scaffold_8166:231-343 +	65.0	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAA--AACACGTCGGA ACTCCCACACACTC------------ACACATACATGCATAATGCTTGAAATTTTGCACACATTTACAATATTTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAGCAACACACATGT Size Hit Count Total Norm V109 Male body
16	scaffold_15252:13917097-13917211 +	45.65	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAG----CAAAACACGTCGGA ACTCCCACACACTC------------ACACACACATGCATAATGCTTGAAATTTTGCACACATTTACAATATTTGTAAATGTGTTGAAAATCGTTTGCACAACTGTGAGCAAGCAACACACATGTGT Size Hit Count Total Norm V109 Male body
4	scaffold_9177:3281-3363 +	33.96	AAGCCCACTCACAGAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCA--C---ACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACGACTGTGAGCAAAACACGTCGGA ---------------------------TGTGTGTGTGTGCCGTGTCTGTGTTTGGTTAAATGGATTGTTTACTTTGATTACAAAAATATGGCAAAT-GTTTGCACGTTTTT----------------- Size Hit Count Total Norm V109 Male body

Generated: 04/20/2012 at 05:24:19 EDT