dme-mir-276a- Best orthologs

dme-mir-276a	chr3L:10358328-10358425 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 10358381-10358402
   star strand at position 10358344-10358365
   mutations
   read mismatches

Notes: Fully conserved.

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:10358313-10358440 +		1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droSim1	chr3L:9747980-9748107 +	LASTZ	1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droSec1	super_0:2571151-2571278 +	LASTZ	1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droYak2	chr3L:10348871-10348998 +	LASTZ	1	GCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droEre2	scaffold_4784:10353122-10353248 +	LASTZ	1	GCAA----------GATA-------TT-TTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droEug1	scf7180000409711:2221453-2221580 +	LASTZ	4	GCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AC-TAA-------------ATGCAAAAAT---C------------------------C
droBia1	scf7180000302428:7389635-7389762 -	LASTZ	4	CCGA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCAAAAAT---C------------------------C
droTak1	scf7180000415515:147698-147825 -	LASTZ	4	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCAAAAAT---C------------------------C
droEle1	scf7180000490564:1195760-1195887 +	LASTZ	4	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TAA-------------ATGCAAAAAT---C------------------------T
droRho1	scf7180000778277:12893-13020 +	LASTZ	4	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TAA-------------ATGCAAAAAT---C------------------------C
droFic1	scf7180000453841:693857-693984 -	LASTZ	4	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCTAAAAT---C------------------------C
droKik1	scf7180000302334:36986-37129 -	LASTZ	4	CCGA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-AAAATTTAAGAAAATAATGCAAAGTT--CC------------------------C
droAna3	scaffold_13337:15274238-15274391 +	LASTZ	1	CCAA----------GATA-------TTTCTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAAC-GA-----AAAC------------ATAAAGCGGAGTT----GGTTTCCCCTTCAACCA-AAAAATC
droBip1	scf7180000395933:129274-129383 +	LASTZ	4	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAA-------------------------------------------------------------------
dp4	chrXR_group6:8756376-8756505 +	LASTZ	1	CGAACGGAGGAGAAGATGTGTGTATTTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA---------------------------------------------------------------
droPer1	super_27:1191188-1191317 +	LASTZ	1	CGAACGGAGGAGAAGATGTGTGTATTTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA---------------------------------------------------------------
droWil1	scaffold_181024:222598-222734 -	LASTZ	1	CTGA---------AA--A-------TATGCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATTTAATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GTTACGAAAAC------------A----GCAA----------------------CAAGAAAAAAC
droVir3	scaffold_13049:16143973-16144087 +	LASTZ	1	TGAA----------AATA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTATATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TG-----------------------------------------------------
droMoj3	scaffold_6680:20621809-20621940 -	LASTZ	1	CCAA----------AGTA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTAAATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAACTCA-----AA-CAA-------------AAACGAAAACGAGC------------------------G
droGri2	scaffold_15110:12521926-12522042 -	LASTZ	1	CAAA----------AATA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAAATTTAAATACTCATAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAAC-AA-----AG-AAA---------------------------------------------------C

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droSim1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droSec1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droYak2	GCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droEre2	GCAA----------GATA-------TT-TTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C
droEug1	GCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AC-TAA-------------ATGCAAAAAT---C------------------------C
droBia1	CCGA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCAAAAAT---C------------------------C
droTak1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCAAAAAT---C------------------------C
droEle1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TAA-------------ATGCAAAAAT---C------------------------T
droRho1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TAA-------------ATGCAAAAAT---C------------------------C
droFic1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCTAAAAT---C------------------------C
droKik1	CCGA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-AAAATTTAAGAAAATAATGCAAAGTT--CC------------------------C
droAna3	CCAA----------GATA-------TTTCTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAAC-GA-----AAAC------------ATAAAGCGGAGTT----GGTTTCCCCTTCAACCA-AAAAATC
droBip1	CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAA-------------------------------------------------------------------
dp4	CGAACGGAGGAGAAGATGTGTGTATTTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA---------------------------------------------------------------
droPer1	CGAACGGAGGAGAAGATGTGTGTATTTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA---------------------------------------------------------------
droWil1	CTGA---------AA--A-------TATGCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATTTAATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GTTACGAAAAC------------A----GCAA----------------------CAAGAAAAAAC
droVir3	TGAA----------AATA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTATATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TG-----------------------------------------------------
droMoj3	CCAA----------AGTA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTAAATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAACTCA-----AA-CAA-------------AAACGAAAACGAGC------------------------G
droGri2	CAAA----------AATA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAAATTTAAATACTCATAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAAC-AA-----AG-AAA---------------------------------------------------C

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	160317.13	2437.00	134020.13	16354.75	7505.25
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	55338.63	25.38	54109.63	566.00	637.63
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	23326.13	2.13	20608.00	1769.00	947.00
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	21377.75	12.75	18466.75	2713.38	184.88
.......................................................................................TAGGAACTTAATACCGTGCTCC.....................................................................................	22	8	8294.50	0.00	8149.00	60.50	85.00
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	6550.63	2.50	5728.88	800.88	18.38
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	5672.25	0.38	5598.00	51.75	22.13
.......................................................................................TAGGAACTTCATACCGTGCTCG.....................................................................................	22	8	4209.50	1.13	3297.88	629.50	281.00
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	2902.63	2789.63	90.13	17.25	5.63
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	8	1735.50	0.13	1718.00	13.88	3.50
.......................................................................................TAGGAACTTAATACCGTGCTCG.....................................................................................	22	8	1315.63	0.00	1272.13	20.25	23.25
.......................................................................................TAGGAACTTCATACCGTGCC.......................................................................................	20	8	911.75	0.00	830.13	79.13	2.50
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	870.63	3.63	692.88	166.50	7.63
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	385.13	1.63	328.25	30.63	24.63
.......................................................................................TAGGAACTTCATACCGTGC........................................................................................	19	8	307.75	0.13	262.00	37.38	8.25
.......................................................................................TAGGAACTTAATACCTTGCTCT.....................................................................................	22	8	274.00	0.13	268.50	1.13	4.25
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	265.63	0.00	261.75	2.88	1.00
.......................................................................................TAGGAACTTCATACCGTGCG.......................................................................................	20	8	246.63	0.00	199.38	45.63	1.63
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	234.38	3.63	205.88	17.50	7.38
.......................................................................................TAGGAACTTAATACCGTGCC.......................................................................................	20	8	232.13	0.00	231.63	0.50	0.00
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	193.88	0.00	148.75	44.88	0.25
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	193.38	0.63	161.25	17.38	14.13
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	185.38	6.88	154.88	17.13	6.50
.......................................................................................TAGGAACTTCATACCxTGCTCT.....................................................................................	21	8	166.50	0.13	142.63	10.25	13.50
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	162.50	2.75	133.75	18.00	8.00
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	8	142.00	2.25	117.38	15.75	6.63
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	125.63	8.50	100.50	12.63	4.00
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	123.38	0.38	100.63	21.63	0.75
.......................................................................................TAGGAACTTAATACCxTGCTCT.....................................................................................	21	8	120.00	0.00	118.88	0.25	0.88
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	110.13	3.38	92.38	9.88	4.50
.......................................................................................TAGGAACTTCATGCCGTGCTCT.....................................................................................	22	8	106.38	2.88	86.25	12.13	5.13
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	8	103.25	0.13	83.50	6.25	13.38
.......................................................................................TAGGAACTTAATACCGGGCTCT.....................................................................................	22	8	95.75	0.00	94.88	0.50	0.38
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	91.13	1.50	76.13	13.25	0.25
.......................................................................................TAGGAACTTTATACCGTGCTCT.....................................................................................	22	8	88.50	4.63	77.50	4.88	1.50
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	8	88.50	2.00	70.88	10.63	5.00
........................................................................................AGGAACTTCATACCGTGCTCT.....................................................................................	21	8	80.25	0.88	68.13	8.38	2.88
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	80.00	3.88	63.50	9.13	3.50
.........................................................................................TGAACTTCATACCGTGCTCT.....................................................................................	20	8	78.50	0.00	66.38	5.00	7.13
.......................................................................................TAGGGACTTAATACCGTGCTCT.....................................................................................	22	8	76.00	0.38	74.63	0.00	1.00
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	75.63	3.25	58.00	9.63	4.75
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	74.50	6.13	59.88	7.00	1.50
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	73.88	4.00	61.00	6.63	2.25
.......................................................................................TATGAACTTAATACCGTGCTCT.....................................................................................	22	8	71.63	0.00	70.25	0.25	1.13
.......................................................................................TAGGAACTTCATACCGTGG........................................................................................	19	8	68.13	0.00	56.88	11.00	0.25
.......................................................................................TAGGAACTTCATACCGTGCTCTC....................................................................................	23	8	67.88	0.63	56.88	9.00	1.38
.......................................................................................TAGGAACTTAATACCGTGC........................................................................................	19	8	67.38	0.00	66.63	0.38	0.38
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	65.75	1.75	55.00	6.38	2.63
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	64.38	6.13	51.13	5.25	1.88
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	64.25	2.75	52.00	6.13	3.38
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	61.88	1.63	51.75	5.50	3.00
.......................................................................................TAGGAACTTAATACCGTGCG.......................................................................................	20	8	59.88	0.00	59.25	0.38	0.25
.......................................................................................TAGGAACTTCATACCTTGCTC......................................................................................	21	8	58.63	0.00	51.88	5.88	0.88
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	57.75	2.00	43.50	5.63	6.63
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	56.75	2.00	46.75	5.00	3.00
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	56.25	1.00	47.50	5.00	2.75
........................................................................................TAGAACTTCATACCGTGCTCT.....................................................................................	21	4	112.25	0.25	96.50	6.00	9.50
................................................AGCGAGGTATAGAGTTCC................................................................................................................................	18	8	55.50	0.13	48.50	6.75	0.13
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	55.38	8.88	38.25	5.38	2.88
.......................................................................................TAGGAACTTCATACCTTGCTCC.....................................................................................	22	4	106.75	0.00	95.00	6.50	5.25
.......................................................................................TAGGAACTTAATACCGTGCCCT.....................................................................................	22	8	52.13	0.00	50.75	0.63	0.75
.......................................................................................TGGGAACTTAATACCGTGCTCT.....................................................................................	22	8	51.25	0.00	50.13	0.63	0.50
.......................................................................................TAGGAACTTAATACTGTGCTCT.....................................................................................	22	8	49.88	0.00	48.88	0.63	0.38
.......................................................................................TAGTAACTTCATACCGTGCTCT.....................................................................................	22	8	48.00	0.13	39.50	4.75	3.63
.......................................................................................TAGGAACTTAATACCGCGCTCT.....................................................................................	22	8	46.38	0.00	45.50	0.38	0.50
.......................................................................................TAGGAACTTCATATCGTGCTCT.....................................................................................	22	8	45.25	2.63	36.13	5.50	1.00
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	44.13	1.75	37.00	4.00	1.38
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	43.13	3.00	35.38	2.63	2.13
.......................................................................................TATGAACTTCATACCGTGCTC......................................................................................	21	8	40.13	0.00	36.63	3.25	0.25
.......................................................................................TAGGAGCTTCATACCGTGCTC......................................................................................	21	8	39.75	0.00	38.00	1.75	0.00
.......................................................................................TACGAACTTAATACCGTGCTCT.....................................................................................	22	8	38.63	0.00	37.50	0.38	0.75
.......................................................................................TAGGAACTTCATACCGGGCTCC.....................................................................................	22	4	76.75	0.00	70.50	3.25	3.00
.......................................................................................TAGGAACTTAATGCCGTGCTCT.....................................................................................	22	8	37.50	0.00	37.13	0.00	0.38
.......................................................................................TAGGAACTTAATACCCTGCTCT.....................................................................................	22	8	35.63	0.13	34.75	0.38	0.38
.......................................................................................TAGGAACTTAATACCATGCTCT.....................................................................................	22	8	32.88	0.13	31.50	0.38	0.88
.......................................................................................TAGGAACTTAATACCTTGCTC......................................................................................	21	8	32.63	0.00	32.38	0.00	0.25
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	32.00	1.00	25.88	2.63	2.50
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	31.50	0.13	16.13	15.25	0.00
.......................................................................................TAGAAACTTCATACCGTGCTCT.....................................................................................	22	8	31.50	0.25	25.13	3.75	2.38
.......................................................................................TAGGAACTTAATACCGAGCTCT.....................................................................................	22	8	31.00	0.00	30.38	0.25	0.38
.......................................................................................TATGAACTTCATACCGTGCTCC.....................................................................................	22	4	59.00	0.00	52.50	3.25	3.25
.........................................................................................TGAACTTAATACCGTGCTCT.....................................................................................	20	8	29.25	0.00	28.50	0.25	0.50
.......................................................................................TAGGAACTTAATACCGTGCTT......................................................................................	21	8	28.75	0.00	28.00	0.63	0.13
.......................................................................................AAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	28.75	2.25	19.50	4.50	2.50
.......................................................................................TAGGAGCTTAATACCGTGCTCT.....................................................................................	22	8	28.25	0.00	27.75	0.25	0.25
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	28.00	2.38	21.38	3.50	0.75
.......................................................................................TAGGAACTTAATACCGTGCTCTA....................................................................................	23	8	27.88	0.00	27.38	0.13	0.38
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	27.75	6.63	18.63	1.50	1.00
.......................................................................................TAGGAACTTCATACCGTGCCC......................................................................................	21	8	27.38	0.00	23.25	3.63	0.50
.......................................................................................TAGGAACTTAATACAGTGCTCT.....................................................................................	22	8	27.38	0.00	27.00	0.38	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCA.....................................................................................	22	8	26.63	0.13	19.38	6.00	1.13
........................................................................................AGGAACTTAATACCGTGCTCT.....................................................................................	21	8	26.50	0.00	25.38	0.50	0.63
.......................................................................................TAGGAACTTCATACCGGGCTC......................................................................................	21	8	25.25	0.00	22.63	2.50	0.13
.......................................................................................TAGGAATTTCATACCGTGCTCT.....................................................................................	22	8	25.25	1.13	20.38	2.63	1.13
.......................................................................................TAGGAACTTGATACCGTGCTCT.....................................................................................	22	8	25.13	0.13	22.38	2.00	0.63
.......................................................................................TAGGGACTTCATACCGTGCTCC.....................................................................................	22	4	50.00	0.00	44.75	3.50	1.75
.......................................................................................TAGGAACTTCATACCxTGCTCC.....................................................................................	21	4	47.75	0.00	41.50	3.00	3.25
.......................................................................................TAGGGACTTCATACCGTGCTC......................................................................................	21	8	23.13	0.00	20.50	2.63	0.00
...........................................................................................AACTTCATACCGTGCTCT.....................................................................................	18	8	23.00	0.00	19.38	2.50	1.13
.......................................................................................TAGGAACTTCATACTGTGCTC......................................................................................	21	8	22.75	0.00	20.75	2.00	0.00
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	22.00	10.00	9.75	1.75	0.50

droSec1

CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	256126.50	114713.38	6584.13	134829.00
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	33639.13	4123.00	5723.50	23792.63
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	3756.13	422.38	57.38	3276.38
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	2901.75	1552.38	39.00	1310.38
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	2135.25	45.63	82.25	2007.38
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	1550.13	249.88	4.38	1295.88
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	1083.25	920.88	6.75	155.63
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	1082.75	702.50	28.00	352.25
................................................AGCGAGGTATAGAGTTCCAACG............................................................................................................................	22	8	955.50	769.38	1.63	184.50
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	682.88	97.25	33.00	552.63
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	511.13	10.00	1.00	500.13
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	486.50	272.25	10.50	203.75
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	436.50	258.38	7.25	170.88
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	361.25	57.75	12.25	291.25
................................................AGCGAGGTATAGAGTTCCGACG............................................................................................................................	22	8	360.00	349.25	0.50	10.25
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	294.38	172.38	8.00	114.00
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	277.25	176.13	3.13	98.00
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	252.00	81.25	4.88	165.88
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	8	242.63	68.50	2.88	171.25
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	223.25	115.25	9.75	98.25
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	222.88	115.00	8.50	99.38
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	8	217.50	82.00	13.75	121.75
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	212.50	128.25	3.13	81.13
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	209.88	88.00	6.25	115.63
................................................AGCGAGGTACAGAGTTCCTACG............................................................................................................................	22	8	207.75	98.63	6.75	102.38
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	201.50	115.50	4.00	82.00
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	198.38	55.63	7.50	135.25
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	198.00	96.63	2.88	98.50
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	8	191.88	74.50	5.88	111.50
................................................ATCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	188.13	87.13	4.50	96.50
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	186.88	37.50	2.88	146.50
................................................AGCGAGATATAGAGTTCCTACG............................................................................................................................	22	8	186.13	32.75	2.25	151.13
................................................GGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	185.88	74.00	7.63	104.25
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	8	179.13	80.50	8.00	90.63
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	169.88	101.63	3.63	64.63
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	166.75	22.00	1.50	143.25
................................................AGCGATGTATAGAGTTCCTACG............................................................................................................................	22	8	165.63	34.75	1.50	129.38
................................................AACGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	163.63	42.38	2.38	118.88
................................................AGCGAGGxxTAGAGTTCCTACG............................................................................................................................	20	8	161.63	45.25	21.38	95.00
................................................ACCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	160.00	94.63	5.38	60.00
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	155.75	122.38	4.25	29.13
................................................AGCAAGGTATAGAGTTCCTACG............................................................................................................................	22	8	154.00	40.75	2.75	110.50
................................................AGCGAGGTAAAGAGTTCCTACG............................................................................................................................	22	8	149.13	7.50	2.25	139.38
................................................AGCGAAGTATAGAGTTCCTACG............................................................................................................................	22	8	144.50	29.63	3.75	111.13
................................................AGCTAGGTATAGAGTTCCTACG............................................................................................................................	22	8	144.25	34.88	1.00	108.38
................................................AGCGAGGTATACAGTTCCTACG............................................................................................................................	22	8	139.63	86.38	2.88	50.38
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	138.13	45.38	1.13	91.63
................................................AGTGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	134.63	52.88	6.13	75.63
................................................AGCGAGGTATCGAGTTCCTACG............................................................................................................................	22	8	128.88	60.00	3.50	65.38
................................................AGCGAGGTATAGACTTCCTACG............................................................................................................................	22	8	127.63	60.00	10.25	57.38
................................................AGCGAGCTATAGAGTTCCTACG............................................................................................................................	22	8	126.75	57.75	2.25	66.75
................................................AGCGAGGTATAGATTTCCTACG............................................................................................................................	22	8	123.75	30.38	3.88	89.50
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	117.38	38.88	6.50	72.00
................................................AGCGAGGTATAGAGTTCCTGCG............................................................................................................................	22	8	112.25	48.13	3.00	61.13
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	107.50	26.38	3.00	78.13
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	107.38	6.25	17.88	83.25
..................................................CGAGGTATAGAGTTCCTACG............................................................................................................................	20	8	99.75	60.13	2.75	36.88
................................................AGCGAGTTATAGAGTTCCTACG............................................................................................................................	22	8	96.75	28.13	2.38	66.25
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	93.63	12.50	4.13	77.00
................................................AGCGACGTATAGAGTTCCTACG............................................................................................................................	22	8	93.38	44.38	0.75	48.25
................................................AGCGAGGTATAGAGTTTCTACG............................................................................................................................	22	8	90.00	32.88	6.63	50.50
................................................AGCCAGGTATAGAGTTCCTACG............................................................................................................................	22	8	89.63	46.38	1.63	41.63
................................................AGCGAGGTATAAAGTTCCTACG............................................................................................................................	22	8	86.25	33.88	3.88	48.50
................................................AGCGTGGTATAGAGTTCCTACG............................................................................................................................	22	8	76.00	41.75	3.25	31.00
................................................AGCGAGGTCTAGAGTTCCTACG............................................................................................................................	22	8	74.00	41.00	2.00	31.00
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	70.50	16.25	1.13	53.13
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	68.63	4.13	8.75	55.75
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	66.88	8.63	10.38	47.88
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	65.75	34.38	0.50	30.88
................................................AGCGAGGTATAGAGTTCTTACG............................................................................................................................	22	8	64.13	24.88	5.75	33.50
................................................AGCGAGGTATAGAGTTCCTACGTT..........................................................................................................................	24	8	61.50	35.63	0.00	25.88
................................................AGCGAGGTTTAGAGTTCCTACG............................................................................................................................	22	8	58.25	19.13	6.13	33.00
................................................AGCGAGGTATAGAATTCCTACG............................................................................................................................	22	8	58.13	25.00	2.00	31.13
................................................AGCGAGGTATTGAGTTCCTACG............................................................................................................................	22	8	55.38	21.25	5.63	28.50
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	55.13	1.88	0.25	53.00
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	52.88	2.13	28.88	21.88
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	51.75	10.50	7.00	34.25
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	48.38	5.25	6.75	36.38
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	46.38	13.50	0.13	32.75
.......................................................................................TAGTAACTTCATACCGTGCTCT.....................................................................................	22	8	46.25	3.00	4.13	39.13
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	46.00	3.63	4.00	38.38
................................................AGCGAGGTATAGAGTTCC................................................................................................................................	18	8	46.00	1.00	1.38	43.63
................................................CGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	45.50	24.00	0.50	21.00
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	45.38	7.63	6.75	31.00
...............................................CAGCGAGGTATAGAGTTCCTACG............................................................................................................................	23	8	45.00	19.75	1.38	23.88
................................................AGCGAxGTATAGAGTTCCTACG............................................................................................................................	21	8	44.50	19.13	4.00	21.38
................................................AGCGAGGTATAGAGTTCCTACGA...........................................................................................................................	23	8	43.63	27.38	0.25	16.00
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	43.13	6.00	12.63	24.50
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	42.75	1.00	1.88	39.88
.......................................................................................TAGGAACTTCATACCGTGTTCT.....................................................................................	22	8	42.13	24.00	9.75	8.38
................................................AGCGAGGTATAGAGTTCCTTT.............................................................................................................................	21	8	34.88	16.50	0.00	18.38
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	34.63	3.50	7.63	23.50
................................................AGCGAGGTATAGAGTTCCTACGC...........................................................................................................................	23	8	33.63	12.88	0.88	19.88
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	32.63	5.50	8.13	19.00
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	32.38	2.88	2.38	27.13
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	8	32.38	2.75	3.50	26.13
................................................AGCGAGGTATAGAGTTCGTACG............................................................................................................................	22	8	31.75	12.00	0.63	19.13
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	31.13	4.00	7.75	19.38
...................................................GAGGTATAGAGTTCCTACG............................................................................................................................	19	8	30.75	8.75	1.25	20.75
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	30.00	3.50	4.50	22.00
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	29.63	4.50	6.13	19.00

droYak2

GCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	64887.50	2548.75	8200.50	1258.00	15320.88	37559.38
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	34411.13	3437.88	4156.88	17686.50	9111.75	18.13
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	21871.25	16.25	796.13	11.63	1972.25	19075.00
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	8113.50	8.75	1441.13	112.38	2768.25	3783.00
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	6675.13	2.00	11.13	2.13	24.88	6635.00
.......................................................................................TAGGAACTTAATACCGTGCTCC.....................................................................................	22	8	3270.13	0.13	1.50	0.00	3.13	3265.38
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	2099.50	0.38	181.25	2.88	468.75	1446.25
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	1259.25	1.75	135.38	14.63	256.75	850.75
.......................................................................................TAGGAACTTCATACCGTGCTCG.....................................................................................	22	8	1082.00	0.88	5.25	0.25	11.13	1064.50
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	609.63	6.50	131.75	23.13	254.75	193.50
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	580.25	23.75	52.88	396.13	107.13	0.38
.......................................................................................TAGGAACTTAATACCGTGCTCG.....................................................................................	22	8	521.63	0.00	0.63	0.00	3.25	517.75
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	8	352.75	0.00	11.13	0.00	30.63	311.00
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	260.75	0.88	41.63	109.63	107.38	1.25
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	214.88	13.88	24.13	9.50	167.38	0.00
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	182.00	10.50	23.00	8.63	139.88	0.00
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	177.38	7.63	33.63	2.13	110.50	23.50
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	169.13	0.38	30.50	50.88	84.75	2.63
.......................................................................................TAGGAACTTCATACCGTGCC.......................................................................................	20	8	147.25	0.00	0.25	0.00	0.13	146.88
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	145.75	0.25	35.00	44.25	66.00	0.25
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	138.75	1.25	9.13	2.38	30.63	95.38
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	134.00	0.00	12.00	0.25	31.88	89.88
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	133.63	5.88	22.63	1.13	83.88	20.13
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	119.13	8.88	6.88	55.50	47.88	0.00
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	116.50	3.63	23.00	0.75	72.88	16.25
.......................................................................................TAGGAACTTAATACCTTGCTCT.....................................................................................	22	8	115.88	0.00	1.13	0.00	3.50	111.25
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	114.75	6.88	7.25	36.75	63.88	0.00
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	109.88	0.38	19.13	43.13	47.00	0.25
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	107.63	3.13	18.75	29.25	56.00	0.50
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	103.38	2.38	11.13	2.50	46.25	41.13
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	96.25	6.25	8.50	11.50	70.00	0.00
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	95.13	2.00	21.63	0.50	65.00	6.00
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	8	88.13	2.88	9.50	0.50	44.13	31.13
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	86.25	10.13	14.00	16.00	46.13	0.00
.......................................................................................TAGGAACGTCATACCGTGCTCT.....................................................................................	22	8	84.13	1.63	11.63	0.00	70.00	0.88
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	83.38	3.38	12.25	2.75	18.50	46.50
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	80.38	6.88	17.25	1.75	43.63	10.88
.......................................................................................TAGGAACTTCCTACCGTGCTCT.....................................................................................	22	8	79.88	7.00	12.75	0.63	58.50	1.00
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	78.25	3.75	8.50	1.75	59.13	5.13
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	78.00	1.88	25.63	2.25	32.38	15.88
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	75.63	7.13	10.13	0.38	48.75	9.25
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	72.88	4.75	8.63	1.00	36.50	22.00
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	71.25	4.13	14.75	1.00	36.75	14.63
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	68.75	6.50	8.63	12.75	40.88	0.00
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	65.63	4.75	13.25	0.13	45.75	1.75
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	65.38	0.25	15.25	2.63	29.00	18.25
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	8	65.13	2.88	1.38	34.00	26.88	0.00
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	8	65.00	3.75	14.75	1.13	23.50	21.88
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	64.50	0.63	4.63	0.88	10.63	47.75
................................................AGCGAGGTATAGAGGTCCTACG............................................................................................................................	22	8	63.13	11.00	11.38	2.75	38.00	0.00
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	62.88	2.63	8.63	0.13	46.75	4.75
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	62.63	0.13	13.38	1.88	21.75	25.50
.......................................................................................TAGGAACTTCAGACCGTGCTCT.....................................................................................	22	8	58.00	2.13	7.88	0.00	48.00	0.00
.......................................................................................TAGGAACTTCATAACGTGCTCT.....................................................................................	22	8	55.00	4.50	19.50	0.00	28.75	2.25
.......................................................................................TAGGAACTTCATGCCGTGCTCT.....................................................................................	22	8	50.75	2.50	4.75	0.38	14.63	28.50
.......................................................................................TAGGAACTTAATACCGTGCC.......................................................................................	20	8	50.50	0.00	0.00	0.00	0.00	50.50
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	50.50	9.25	8.88	2.38	30.00	0.00
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	50.25	2.63	7.13	1.38	14.63	24.50
................................................AGCGAGGTATCGAGTTCCTACG............................................................................................................................	22	8	49.50	3.50	3.75	11.25	31.00	0.00
.......................................................................................TAGGAACTTAATACCxTGCTCT.....................................................................................	21	8	47.88	0.00	0.00	0.00	0.25	47.63
.......................................................................................TAGGAACTTCATACCGTGC........................................................................................	19	8	47.25	0.13	0.75	0.00	1.50	44.88
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	47.00	7.75	7.50	5.25	26.50	0.00
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	47.00	3.00	10.13	0.50	20.25	13.13
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	45.75	0.75	7.13	0.38	20.88	16.63
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	44.75	3.38	17.50	0.13	16.63	7.13
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	44.13	14.50	7.50	3.88	18.25	0.00
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	44.00	2.13	4.50	19.50	17.88	0.00
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	43.88	2.88	9.38	0.75	14.63	16.25
.......................................................................................TAGGAACTTTATACCGTGCTCT.....................................................................................	22	8	43.88	2.00	5.75	0.38	15.25	20.50
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	43.50	1.38	8.13	0.88	20.38	12.75
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	42.25	1.00	3.75	1.25	26.00	10.25
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	41.75	4.50	5.13	5.88	26.13	0.13
.......................................................................................TAGGAACTTCATACCxTGCTCT.....................................................................................	21	8	41.00	0.00	0.13	0.88	0.38	39.63
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	41.00	4.63	8.75	0.13	17.63	9.88
.......................................................................................TAGGAACTTCATCCCGTGCTCT.....................................................................................	22	8	39.63	2.13	5.38	0.88	28.63	2.63
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	39.50	2.63	7.00	16.63	13.25	0.00
................................................AGCGAGGTATAGAGTTCCGACG............................................................................................................................	22	8	39.38	5.13	6.25	0.88	27.13	0.00
................................................AGCGAGGTATAGTGTTCCTACG............................................................................................................................	22	8	39.13	3.00	3.88	1.38	30.88	0.00
................................................AGCGAGGTATAGAGTTCC................................................................................................................................	18	8	38.88	0.13	9.63	0.38	26.25	2.50
.......................................................................................TAGGAACTTCATACCGTGCG.......................................................................................	20	8	38.25	0.00	0.13	0.00	0.13	38.00
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	37.88	3.75	3.63	16.50	14.00	0.00
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	37.50	1.13	6.38	0.50	14.75	14.75
.......................................................................................TAGGAACTTCATACCGTGCGCT.....................................................................................	22	8	37.25	1.63	3.63	0.25	27.25	4.50
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	8	36.38	4.13	6.25	14.50	11.50	0.00
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	8	36.13	4.50	4.63	13.25	13.75	0.00
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	8	36.13	0.38	3.75	0.25	7.63	24.13
................................................AGCGAGGTATAGAGATCCTACG............................................................................................................................	22	8	35.75	7.50	5.38	2.13	20.75	0.00
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	34.75	1.75	6.25	1.63	13.63	11.50
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	34.38	3.88	4.75	12.63	13.13	0.00
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	34.13	4.50	7.50	0.00	13.38	8.75
.......................................................................................TAGGACCTTCATACCGTGCTCT.....................................................................................	22	8	33.00	0.63	3.75	0.25	25.88	2.50
.......................................................................................TATGAACTTAATACCGTGCTCT.....................................................................................	22	8	32.88	0.00	0.38	0.00	1.75	30.75
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	32.38	5.88	4.88	2.38	19.25	0.00
................................................AGCGAGGTACAGAGTTCCTACG............................................................................................................................	22	8	32.13	2.25	4.00	14.38	11.50	0.00
.......................................................................................TAGGAACTTAATACCGGGCTCT.....................................................................................	22	8	31.63	0.13	1.25	0.00	6.50	23.75
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	8	31.13	3.00	4.75	10.38	13.00	0.00
.......................................................................................TCGGAACTTCATACCGTGCTCT.....................................................................................	22	8	30.75	1.63	4.50	0.13	23.50	1.00
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	30.13	1.13	2.75	5.50	20.75	0.00
................................................AGCGTGGTATAGAGTTCCTACG............................................................................................................................	22	8	29.75	3.63	2.38	3.75	20.00	0.00
.......................................................................................AAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	29.13	1.25	5.38	0.38	19.75	2.38
.......................................................................................TAGGAACTGCATACCGTGCTCT.....................................................................................	22	8	28.75	0.38	3.13	0.00	24.13	1.13

droEre2

GCAA----------GATA-------TT-TTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CA-----AG-TGA-------------ATGCAAAAAT---C------------------------C	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	52981.75	2078.00	10375.63	0.00	40528.13
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	11350.25	1137.25	436.63	0.00	9776.38
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	5821.13	12.13	1345.50	0.00	4463.50
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	4429.63	16.75	830.38	0.00	3582.50
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	850.00	0.25	157.13	0.00	692.63
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	532.13	6.13	2.00	0.00	524.00
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	479.63	2.88	101.13	0.00	375.63
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	437.63	1.50	106.50	0.00	329.63
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	389.50	2.25	16.38	0.00	370.88
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	356.63	2.63	11.75	0.00	342.25
.......................................................................................TAGTAACTTCATACCGTGCTCT.....................................................................................	22	8	285.75	6.88	4.13	0.00	274.75
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	203.00	23.25	22.75	0.00	157.00
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	196.50	2.38	14.75	0.00	179.38
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	172.00	0.63	20.00	0.00	151.38
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	169.88	7.50	26.50	0.00	135.88
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	164.50	11.88	20.38	0.00	132.25
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	139.63	3.63	33.38	0.00	102.63
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	122.88	16.50	39.75	0.00	66.63
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	115.75	3.38	31.25	0.00	81.13
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	107.75	4.13	43.00	0.00	60.63
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	107.38	8.13	0.50	0.00	98.75
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	106.75	5.63	17.38	0.00	83.75
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	95.38	3.50	14.88	0.00	77.00
................................................AGCTAGGTATAGAGTTCCTACG............................................................................................................................	22	8	93.50	2.38	0.00	0.00	91.13
.......................................................................................TAGGAACTTCATAACGTGCTCT.....................................................................................	22	8	91.50	2.88	11.00	0.00	77.63
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	90.13	6.75	4.00	0.00	79.38
................................................AGCGATGTATAGAGTTCCTACG............................................................................................................................	22	8	87.38	4.38	0.50	0.00	82.50
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	86.38	0.75	0.63	0.00	85.00
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	76.75	0.63	18.88	0.00	57.25
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	76.63	2.63	17.63	0.00	56.38
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	8	75.88	6.63	14.00	0.00	55.25
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	74.88	2.00	14.13	0.00	58.75
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	74.38	19.38	2.50	0.00	52.50
................................................AGCGAGGTATAGAGTTCC................................................................................................................................	18	8	71.63	0.25	6.38	0.00	65.00
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	69.38	6.00	26.88	0.00	36.50
................................................ATCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	68.50	3.00	0.00	0.00	65.50
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	8	67.88	5.38	3.25	0.00	59.25
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	64.38	5.38	19.63	0.00	39.38
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	61.50	1.00	0.63	0.00	59.88
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	60.25	3.38	10.38	0.00	46.50
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	57.25	2.25	18.63	0.00	36.38
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	54.88	2.75	0.88	0.00	51.25
.......................................................................................TATGAACTTCATACCGTGCTC......................................................................................	21	8	54.88	0.13	0.38	0.00	54.38
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	54.38	6.25	8.88	0.00	39.25
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	53.63	0.63	11.38	0.00	41.63
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	52.25	2.00	8.63	0.00	41.63
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	50.13	3.50	10.75	0.00	35.88
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	48.25	6.38	8.50	0.00	33.38
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	48.25	5.13	7.63	0.00	35.50
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	47.25	1.75	5.75	0.00	39.75
.......................................................................................TAGAAACTTCATACCGTGCTCT.....................................................................................	22	8	44.88	3.13	6.13	0.00	35.63
.......................................................................................TATGAACTTAATACCGTGCTCT.....................................................................................	22	8	44.88	0.00	0.25	0.00	44.63
.......................................................................................TAGGAACTTCATACAGTGCTC......................................................................................	21	8	44.25	0.00	1.75	0.00	42.50
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	8	43.75	2.63	11.13	0.00	30.00
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	43.38	3.50	11.25	0.00	28.63
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	42.50	0.13	2.13	0.00	40.25
.......................................................................................TAGGAACTTCATACCGTGCTA......................................................................................	21	8	41.75	0.00	4.00	0.00	37.75
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	8	41.13	0.00	10.75	0.00	30.38
.......................................................................................TAGGAACTTCCTACCGTGCTCT.....................................................................................	22	8	40.75	5.50	14.38	0.00	20.88
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	39.00	0.00	7.13	0.00	31.88
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	38.88	7.25	13.00	0.00	18.63
.......................................................................................TAGGAACTTAATACAGTGCTCT.....................................................................................	22	8	37.50	0.00	1.38	0.00	36.13
.......................................................................................TAGGAACTTTATACCGTGCTCT.....................................................................................	22	8	36.00	2.63	6.00	0.00	27.38
.......................................................................................TAGGAACTTCATATCGTGCTCT.....................................................................................	22	8	35.13	2.13	7.75	0.00	25.25
.......................................................................................TAGGAACTTCATGCCGTGCTCT.....................................................................................	22	8	33.50	1.75	7.88	0.00	23.88
.......................................................................................TCGGAACTTCATACCGTGCTCT.....................................................................................	22	8	33.00	1.63	6.88	0.00	24.50
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	32.75	6.75	1.38	0.00	24.63
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	32.38	3.13	0.75	0.00	28.50
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	31.50	5.00	16.75	0.00	9.75
.......................................................................................TAGGAACTTAATACCGTGCTAT.....................................................................................	22	8	30.88	0.00	1.50	0.00	29.38
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	30.00	1.75	0.88	0.00	27.38
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	29.88	0.00	6.13	0.00	23.75
.......................................................................................TAGTAACTTCATACCGTGCTC......................................................................................	21	8	29.25	0.13	0.50	0.00	28.63
................................................AGCGAGGTATAGATTTCCTACG............................................................................................................................	22	8	29.25	3.50	0.13	0.00	25.63
.......................................................................................TAGGAACTTCATACCGTGCTTT.....................................................................................	22	8	28.13	1.38	7.50	0.00	19.25
.......................................................................................TAGGAATTTCATACCGTGCTCT.....................................................................................	22	8	28.00	1.13	4.13	0.00	22.75
.......................................................................................TAGTAACTTAATACCGTGCTCT.....................................................................................	22	8	25.88	0.13	0.75	0.00	25.00
.......................................................................................TAGGAACTTCATACCGTTCTC......................................................................................	21	8	25.50	0.00	3.25	0.00	22.25
.......................................................................................TAGGAACTTCATCCCGTGCTCT.....................................................................................	22	8	25.50	2.00	9.00	0.00	14.50
.......................................................................................TAGGAACTTCATACCGTGTTCT.....................................................................................	22	8	25.38	1.13	6.00	0.00	18.25
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	25.25	0.00	6.13	0.00	19.13
........................................................................................TAGAACTTCATACCGTGCTCT.....................................................................................	21	4	48.75	0.00	2.25	0.00	46.50
.......................................................................................TAGGAACTTCATACCGTGCTCTG....................................................................................	23	8	24.38	0.13	4.38	0.00	19.88
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	24.00	3.38	11.50	0.00	9.13
.......................................................................................TAGGACCTTCATACCGTGCTCT.....................................................................................	22	8	24.00	2.88	4.88	0.00	16.25
.........................................................................................TGAACTTCATACCGTGCTCT.....................................................................................	20	8	23.50	0.00	0.13	0.00	23.38
................................................AGCGAGTTATAGAGTTCCTACG............................................................................................................................	22	8	23.00	3.75	0.00	0.00	19.25
.......................................................................................TAGGAACTTCATACCGTGATC......................................................................................	21	8	22.38	0.00	1.75	0.00	20.63
.......................................................................................TAGGAACTTCATACCGTGCTCTC....................................................................................	23	8	22.13	0.75	5.75	0.00	15.63
........................................................................................AGGAACTTCATACCGTGCTCT.....................................................................................	21	8	21.88	1.00	2.88	0.00	18.00
.......................................................................................TAGGAACGTCATACCGTGCTCT.....................................................................................	22	8	21.75	2.75	18.00	0.00	1.00
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	21.25	5.75	0.63	0.00	14.88
.......................................................................................TAGGAACTTCATACCTTGCTC......................................................................................	21	8	21.25	0.00	1.75	0.00	19.50
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	21.13	8.88	2.63	0.00	9.63
.......................................................................................TAGGAACTTAATACCGTTCTCT.....................................................................................	22	8	20.13	0.25	1.75	0.00	18.13
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	20.00	5.88	3.63	0.00	10.50
.......................................................................................TAGGAACTTCATACCGTGC........................................................................................	19	8	19.88	0.13	1.25	0.00	18.50
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	18.88	5.38	0.75	0.00	12.75
......................................................................................CTAGGAACTTCATACCGTGCTC......................................................................................	22	8	18.13	0.00	3.88	0.00	14.25
.......................................................................................TAGGAACTTAATACCGTGATCT.....................................................................................	22	8	17.63	0.13	1.38	0.00	16.13
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	17.50	1.88	1.63	0.00	14.00

droEug1

GCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AC-TAA-------------ATGCAAAAAT---C------------------------C

Size

Hit Count

Total Norm

droBia1

CCGA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCAAAAAT---C------------------------C

Size

Hit Count

Total Norm

droTak1

CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCAAAAAT---C------------------------C

Size

Hit Count

Total Norm

droEle1

CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TAA-------------ATGCAAAAAT---C------------------------T

Size

Hit Count

Total Norm

droRho1

CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TAA-------------ATGCAAAAAT---C------------------------C

Size

Hit Count

Total Norm

droFic1

CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-TAA-------------ATGCTAAAAT---C------------------------C

Size

Hit Count

Total Norm

droKik1

CCGA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-AA-----AG-AAAATTTAAGAAAATAATGCAAAGTT--CC------------------------C

Size

Hit Count

Total Norm

droAna3

CCAA----------GATA-------TTTCTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAAC-GA-----AAAC------------ATAAAGCGGAGTT----GGTTTCCCCTTCAACCA-AAAAATC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	125309.50	29741.13	88057.63	7278.13	232.63
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	24715.75	2889.50	9296.00	12365.00	165.25
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	8633.50	5020.63	3196.88	412.25	3.75
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	4213.88	147.13	2386.25	1678.13	2.38
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	1923.63	46.88	793.63	1080.38	2.75
................................................ATCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	1572.88	303.75	1264.50	3.75	0.88
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	1281.00	105.50	1089.38	86.00	0.13
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	839.50	209.13	615.50	13.75	1.13
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	678.50	140.25	488.75	43.25	6.25
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	668.25	155.88	377.50	134.63	0.25
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	625.38	209.00	401.38	14.38	0.63
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	619.13	46.38	322.88	249.50	0.38
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	594.88	7.88	338.13	248.88	0.00
................................................AGCTAGGTATAGAGTTCCTACG............................................................................................................................	22	8	592.63	75.38	513.25	2.50	1.50
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	532.88	218.50	293.75	20.50	0.13
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	406.25	53.88	331.75	20.63	0.00
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	406.13	70.50	294.50	40.88	0.25
................................................AGCGATGTATAGAGTTCCTACG............................................................................................................................	22	8	386.00	35.75	345.75	4.25	0.25
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	337.63	43.88	263.13	30.13	0.50
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	293.88	27.63	98.38	167.38	0.50
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	284.00	52.13	141.13	89.13	1.63
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	260.25	94.38	104.63	61.13	0.13
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	239.88	39.75	18.88	179.88	1.38
................................................AGCGAGGTATAGAGTTCCTAGG............................................................................................................................	22	8	237.50	134.00	95.75	7.75	0.00
................................................AGGGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	234.38	2.75	226.63	4.75	0.25
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	233.75	6.38	213.13	13.63	0.63
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	8	217.63	39.00	166.75	11.75	0.13
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	201.88	52.88	85.50	63.38	0.13
................................................GGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	201.00	48.38	141.50	10.50	0.63
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	177.88	3.63	12.63	160.38	1.25
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	176.88	62.38	98.63	15.63	0.25
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	176.00	28.63	115.25	31.88	0.25
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	169.25	25.75	89.63	52.63	1.25
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	164.00	38.50	107.75	17.13	0.63
................................................AGCGAGGTATAGAGTTCC................................................................................................................................	18	8	151.50	1.25	79.38	70.88	0.00
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	149.63	101.00	21.63	26.13	0.88
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	8	140.25	28.38	100.75	10.50	0.63
................................................AGCGAGGTATACAGTTCCTACG............................................................................................................................	22	8	133.38	84.88	28.38	20.00	0.13
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	131.25	15.25	83.75	32.00	0.25
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	8	131.00	44.00	75.00	11.63	0.38
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	123.13	19.38	80.88	20.63	2.25
................................................AGCGAGGTATAAAGTTCCTACG............................................................................................................................	22	8	115.25	80.75	27.25	6.63	0.63
................................................AGCGAGGTATAGATTTCCTACG............................................................................................................................	22	8	114.00	27.63	81.00	4.38	1.00
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	108.38	17.25	72.88	17.63	0.63
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	107.00	2.25	48.50	55.88	0.38
................................................AGCAAGGTATAGAGTTCCTACG............................................................................................................................	22	8	106.88	31.88	70.38	4.38	0.25
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	106.75	25.38	69.88	10.88	0.63
................................................AGCGAGGTACAGAGTTCCTACG............................................................................................................................	22	8	105.63	19.13	75.13	11.13	0.25
................................................AACGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	105.50	69.88	27.75	7.88	0.00
................................................ACCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	105.00	53.13	46.50	5.13	0.25
................................................ATCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	104.00	17.13	86.75	0.00	0.13
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	101.00	13.88	63.88	23.13	0.13
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	8	99.25	26.88	7.75	64.63	0.00
................................................AGCGAGGTATAGAGTACCTACG............................................................................................................................	22	8	96.38	85.63	6.50	4.13	0.13
.................................................GCTAGGTATAGAGTTCCTACG............................................................................................................................	21	8	96.38	15.75	80.63	0.00	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	95.38	17.75	29.88	47.63	0.13
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	94.00	3.50	13.13	76.75	0.63
................................................AGCGAGGTATAGAGTTCCTGCG............................................................................................................................	22	8	88.75	12.88	64.63	10.75	0.50
................................................AGCGAGGTATAGACTTCCTACG............................................................................................................................	22	8	88.75	39.00	38.25	10.88	0.63
................................................AGTGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	84.75	13.63	62.38	8.75	0.00
................................................AGCGAGATATAGAGTTCCTACG............................................................................................................................	22	8	84.25	31.50	48.13	4.38	0.25
................................................AGCGAGGTATCGAGTTCCTACG............................................................................................................................	22	8	80.38	51.88	18.00	10.50	0.00
................................................ATCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	78.00	13.63	64.00	0.25	0.13
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	75.38	2.00	3.63	69.50	0.25
................................................AGCGAGGTATAGTGTTCCTACG............................................................................................................................	22	8	72.50	47.75	6.50	18.00	0.25
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	72.50	13.88	35.75	21.38	1.50
.................................................GCGAGGTATAGAGTTCCTACT............................................................................................................................	21	8	72.00	47.50	22.63	1.50	0.38
................................................AGCGAGTTATAGAGTTCCTACG............................................................................................................................	22	8	71.38	16.38	51.38	3.13	0.50
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	70.50	4.00	22.75	43.75	0.00
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	69.00	3.75	4.88	60.13	0.25
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	69.00	1.13	2.38	65.38	0.13
.................................................GCGAGGTATAGAGTTCCTACA............................................................................................................................	21	8	68.50	51.50	16.50	0.50	0.00
................................................AGCGAGGxxTAGAGTTCCTACG............................................................................................................................	20	8	67.25	11.38	55.75	0.13	0.00
.......................................................................................TAGGAACTTCAGACCGTGCTCT.....................................................................................	22	8	66.25	14.13	0.25	51.50	0.38
................................................AGCGAGGTATAGAATTCCTACG............................................................................................................................	22	8	64.88	34.13	25.88	4.75	0.13
.......................................................................................TAGTAACTTCATACCGTGCTCT.....................................................................................	22	8	63.63	6.63	41.00	15.63	0.38
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	63.25	10.38	18.50	32.25	2.13
.......................................................................................TAGGAACGTCATACCGTGCTCT.....................................................................................	22	8	62.50	0.25	0.25	62.00	0.00
................................................AGCGAGGTATAGAGTTCCTACGTT..........................................................................................................................	24	8	61.25	18.88	30.00	12.38	0.00
................................................AGCGTGGTATAGAGTTCCTACG............................................................................................................................	22	8	61.00	8.13	38.00	14.63	0.25
.................................................GCGAGGTATAGAGTTCCTAC.............................................................................................................................	20	8	59.50	29.38	26.88	3.25	0.00
................................................AGCGAGGTATAGAGTTTCTACG............................................................................................................................	22	8	57.88	10.00	42.25	5.25	0.38
................................................AGCGAGGTATAGAGTTCTTACG............................................................................................................................	22	8	57.63	8.25	36.75	12.63	0.00
................................................AGCGAGGTATAGAGTTCCTACGC...........................................................................................................................	23	8	56.75	20.88	20.50	15.38	0.00
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	56.50	10.00	17.00	29.00	0.50
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	54.63	0.75	2.25	51.25	0.38
.................................................GCGAGGTATATAGTTCCTACG............................................................................................................................	21	8	54.38	28.88	24.75	0.75	0.00
................................................AGCGAGGTATAGAGTGCCTACG............................................................................................................................	22	8	54.13	39.88	2.63	11.25	0.38
.......................................................................................TATGAACTTCATACCGTGCTC......................................................................................	21	8	52.88	0.63	50.00	2.25	0.00
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	51.75	2.50	6.38	42.38	0.50
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	51.13	1.38	28.50	21.13	0.13
................................................AGCGAGCTATAGAGTTCCTACG............................................................................................................................	22	8	51.00	19.13	25.25	6.00	0.63
..................................................CGAGGTATAGAGTTCCTACG............................................................................................................................	20	8	50.75	24.63	23.50	2.50	0.13
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	49.75	9.50	7.75	32.38	0.13
................................................AGCGAGGTATAGAGGTCCTACG............................................................................................................................	22	8	48.75	4.00	6.63	37.00	1.13
................................................AGCCAGGTATAGAGTTCCTACG............................................................................................................................	22	8	48.38	23.50	18.50	5.75	0.63
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	47.50	3.63	23.00	20.63	0.25
................................................AGCGAGGTATTGAGTTCCTACG............................................................................................................................	22	8	47.25	20.13	23.25	3.75	0.13
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	46.25	0.63	4.13	41.50	0.00
.................................................GAGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	46.00	27.25	15.88	2.88	0.00
................................................AGCGAGGTCTAGAGTTCCTACG............................................................................................................................	22	8	44.88	19.88	19.00	5.88	0.13

droBip1

CCAA----------GATA-------TTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAA-------------------------------------------------------------------

Size

Hit Count

Total Norm

dp4

CGAACGGAGGAGAAGATGTGTGTATTTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA---------------------------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	15887.63	1554.25	3420.25	10416.25	496.88
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	11662.00	8588.75	2201.00	870.88	1.38
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	4204.75	490.75	44.13	3476.63	193.25
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	1387.88	11.38	43.00	1307.38	26.13
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	412.63	5.00	1.25	401.38	5.00
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	361.63	32.75	4.50	289.25	35.13
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	327.63	297.88	19.25	10.50	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	293.88	42.25	17.13	227.63	6.88
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	249.13	211.50	3.88	33.63	0.13
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	101.00	82.75	1.00	17.25	0.00
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	98.75	1.88	14.13	82.38	0.38
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	91.50	69.88	0.25	21.38	0.00
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	76.13	57.75	0.50	17.63	0.25
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	70.00	2.25	6.00	61.75	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	61.25	5.25	4.63	24.88	26.50
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	48.00	0.38	7.13	40.50	0.00
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	8	46.75	0.63	0.00	44.75	1.38
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	45.63	0.25	7.75	37.38	0.25
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	42.13	3.25	12.38	26.38	0.13
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	40.00	3.50	0.13	33.75	2.63
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	37.63	0.50	17.88	19.25	0.00
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	32.50	26.38	4.00	2.13	0.00
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	30.00	0.63	0.13	29.13	0.13
.......................................................................................TAGGAACTTCATACCGCGCTC......................................................................................	21	8	28.75	0.25	0.50	28.00	0.00
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	8	28.38	0.75	1.13	26.00	0.50
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	28.25	0.88	11.38	15.88	0.13
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	27.88	0.88	4.13	22.63	0.25
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	27.63	0.38	9.75	17.50	0.00
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	26.63	1.38	19.63	5.63	0.00
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	24.75	0.63	8.88	14.75	0.50
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	23.75	7.13	1.25	14.38	1.00
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	23.75	0.13	14.00	9.63	0.00
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	23.13	0.50	6.13	16.50	0.00
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	22.25	17.50	2.00	2.75	0.00
.......................................................................................TAGGAACTTCAGACCGTGCTCT.....................................................................................	22	8	22.25	0.25	5.25	16.63	0.13
.......................................................................................TAGGAACGTCATACCGTGCTCT.....................................................................................	22	8	21.38	0.00	5.13	16.25	0.00
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	20.75	2.38	4.75	13.38	0.25
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	20.25	9.00	7.63	3.63	0.00
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	20.25	0.75	3.00	16.00	0.50
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	8	20.13	0.75	4.88	14.13	0.38
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	19.38	6.38	9.63	3.38	0.00
.......................................................................................TAGGAACTTCATAACGTGCTCT.....................................................................................	22	8	19.13	0.13	7.25	11.63	0.13
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	18.75	1.00	3.75	13.88	0.13
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	18.38	0.63	7.50	10.13	0.13
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	18.13	1.25	6.75	10.13	0.00
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	17.88	1.88	11.88	4.13	0.00
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	17.88	0.88	6.88	10.13	0.00
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	17.63	1.00	1.63	14.25	0.75
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	17.63	6.38	10.00	1.25	0.00
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	17.63	9.38	6.13	2.13	0.00
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	17.38	0.63	3.25	13.50	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	17.13	1.88	0.50	14.00	0.75
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	17.13	11.75	3.13	2.25	0.00
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	8	16.50	0.88	3.00	12.50	0.13
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	16.00	5.50	8.75	1.75	0.00
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	15.38	2.38	2.75	9.63	0.63
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	15.38	0.75	3.88	10.63	0.13
................................................AGCGAGGTATAGAGTTCCTACGTT..........................................................................................................................	24	8	15.13	14.00	0.00	1.13	0.00
................................................AGCGAGGTATAGAGGTCCTACG............................................................................................................................	22	8	14.63	0.25	13.00	1.38	0.00
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	14.63	1.75	10.75	2.13	0.00
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	14.63	1.13	4.38	9.00	0.13
.......................................................................................TAGGAACTTCCTACCGTGCTCT.....................................................................................	22	8	14.38	0.38	6.88	7.13	0.00
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	14.25	7.88	4.63	1.75	0.00
.......................................................................................TAGGAACTTCATATCGTGCTCT.....................................................................................	22	8	13.63	0.38	7.50	5.75	0.00
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	13.50	1.75	2.88	8.88	0.00
.......................................................................................TAGGAACTTCATACCGAGCTC......................................................................................	21	8	13.50	0.00	0.13	13.25	0.13
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	13.50	1.50	3.38	8.63	0.00
.................................................GCGAGGTATAGAGTTCCTAC.............................................................................................................................	20	8	13.50	12.75	0.00	0.75	0.00
.......................................................................................TAGGAACTTCATACCGTGCGCT.....................................................................................	22	8	13.38	0.13	3.38	9.88	0.00
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	13.25	0.63	2.25	10.13	0.25
.......................................................................................TAAGAACTTCATACCGTGCTC......................................................................................	21	8	13.00	0.00	0.00	13.00	0.00
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	8	12.63	7.63	4.13	0.88	0.00
.......................................................................................TAGGAACTTCATGCCGTGCTCT.....................................................................................	22	8	12.25	0.75	3.00	6.50	2.00
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	11.88	8.00	2.88	1.00	0.00
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	11.50	7.25	2.50	1.75	0.00
.......................................................................................TAGGAATTTCATACCGTGCTCT.....................................................................................	22	8	11.38	0.25	4.38	6.75	0.00
.......................................................................................TAGGAACTTAATACCGCGCTCT.....................................................................................	22	8	11.00	0.13	0.38	10.50	0.00
.......................................................................................TAGGAACTTTATACCGTGCTCT.....................................................................................	22	8	11.00	0.88	3.88	6.13	0.13
..................................................CGAGGTATAGAGTTCCTACG............................................................................................................................	20	8	10.88	10.50	0.13	0.25	0.00
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	10.75	4.38	4.50	1.88	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCG.....................................................................................	22	8	10.63	0.75	2.00	3.75	4.13
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	8	10.50	5.50	4.25	0.75	0.00
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	10.50	4.75	4.63	1.13	0.00
.......................................................................................TAGAAACTTCATACCGTGCTCT.....................................................................................	22	8	10.25	0.75	3.63	5.63	0.25
.......................................................................................GAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	10.00	0.38	2.25	7.25	0.13
................................................AGCGAGGTATAGAGATCCTACG............................................................................................................................	22	8	9.88	0.88	7.50	1.50	0.00
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	9.88	0.25	2.25	6.75	0.63
.......................................................................................TAGGAACTTCATCCCGTGCTCT.....................................................................................	22	8	9.63	0.63	3.50	5.38	0.13
................................................AGCGAGGTATAGAGTTCCGACG............................................................................................................................	22	8	9.63	0.63	7.38	1.63	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCA.....................................................................................	22	8	9.50	2.00	0.38	7.00	0.13
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	9.50	2.50	6.25	0.75	0.00
................................................GGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	9.38	6.38	2.50	0.50	0.00
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	8	9.13	6.13	2.25	0.75	0.00
.......................................................................................TACGAACTTCATACCGTGCTC......................................................................................	21	8	9.00	0.50	0.00	8.38	0.13
......................................................................................CTAGGAACTTCATACCGTGCTC......................................................................................	22	8	9.00	0.63	0.13	8.00	0.25
.......................................................................................AAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	9.00	0.25	2.13	6.38	0.25
................................................AGCGAGGTATACAGTTCCTACG............................................................................................................................	22	8	8.75	4.88	2.75	1.13	0.00
.......................................................................................TAGGAACTTCATACCGTGTTCT.....................................................................................	22	8	8.00	0.38	2.50	5.13	0.00
................................................AGCGAGGTATAGAGTTCCTGCG............................................................................................................................	22	8	8.00	3.13	4.13	0.75	0.00
.......................................................................................TAGGAACTTCATACCGTGCTTT.....................................................................................	22	8	8.00	0.75	2.50	4.75	0.00
.......................................................................................TAGGAACTTAATACCGAGCTCT.....................................................................................	22	8	7.88	0.00	0.25	7.63	0.00

droPer1

CGAACGGAGGAGAAGATGTGTGTATTTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA---------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	22831.25	1053.25	478.25	9339.25	10779.88	1180.63
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	13041.75	3804.38	365.13	980.88	7890.88	0.50
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	8908.00	164.63	26.00	3017.38	5583.00	117.00
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	2823.75	9.13	6.50	1227.13	1454.13	126.88
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	1101.00	2.50	0.25	348.75	745.13	4.38
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	504.25	14.75	1.13	183.75	296.63	8.00
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	420.75	12.88	5.63	163.88	235.50	2.88
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	320.50	66.63	0.00	23.38	230.25	0.25
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	247.88	168.13	2.88	9.38	67.50	0.00
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	227.63	98.75	0.13	11.38	117.38	0.00
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	223.00	10.13	0.75	4.63	207.50	0.00
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	202.75	0.75	0.63	60.50	140.25	0.63
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	194.88	1.13	0.63	93.38	99.75	0.00
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	161.00	24.88	0.25	14.38	121.50	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	154.88	1.38	0.38	18.50	36.25	98.38
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	133.88	16.88	0.00	13.50	103.50	0.00
.......................................................................................TAGGAACTTCATACCGCGCTC......................................................................................	21	8	98.88	0.00	0.13	19.13	79.63	0.00
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	92.63	6.00	0.88	3.38	82.38	0.00
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	80.75	1.63	0.50	21.75	56.75	0.13
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	79.38	1.13	0.63	10.38	66.50	0.75
.......................................................................................TAGGAACGTCATACCGTGCTCT.....................................................................................	22	8	76.88	0.13	0.00	6.88	69.88	0.00
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	74.75	0.25	0.25	16.38	57.88	0.00
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	8	69.38	0.00	0.00	27.25	41.88	0.25
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	62.00	0.13	0.88	14.13	46.63	0.25
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	8	59.63	4.88	0.13	2.13	52.50	0.00
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	52.88	2.13	1.75	3.38	45.63	0.00
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	52.75	0.13	0.00	21.50	30.75	0.38
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	52.50	1.13	1.00	23.63	26.75	0.00
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	52.13	0.38	0.75	13.38	36.88	0.75
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	50.25	7.00	0.63	1.50	41.13	0.00
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	47.75	1.25	0.00	12.88	33.50	0.13
.......................................................................................TAGGAACTTCAGACCGTGCTCT.....................................................................................	22	8	47.50	0.13	0.13	9.63	37.50	0.13
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	46.13	0.38	1.88	8.13	35.00	0.75
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	45.13	3.38	0.38	0.88	40.50	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCG.....................................................................................	22	8	44.13	0.25	0.25	3.13	9.88	30.63
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	42.38	0.88	1.25	2.25	38.00	0.00
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	42.00	0.63	0.25	12.63	28.38	0.13
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	41.75	0.75	0.38	19.25	21.13	0.25
.......................................................................................TAGGAACTTCATACCGAGCTC......................................................................................	21	8	40.63	0.13	0.00	9.25	31.25	0.00
.......................................................................................TAGGAACGTCATACCGTGCTC......................................................................................	21	8	39.25	0.00	0.00	2.75	36.50	0.00
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	38.50	1.88	0.38	1.38	34.88	0.00
.......................................................................................TAGGAACTGCATACCGTGCTCT.....................................................................................	22	8	37.63	0.13	0.25	3.00	34.25	0.00
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	37.00	1.25	0.00	1.50	34.25	0.00
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	36.88	0.88	0.75	10.00	25.00	0.25
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	36.75	4.38	0.63	3.88	27.88	0.00
.......................................................................................TAGGGACTTCATACCGTGCTC......................................................................................	21	8	36.00	0.63	0.00	3.25	31.88	0.25
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	35.88	0.38	1.50	7.88	26.13	0.00
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	35.38	2.13	0.00	3.13	30.13	0.00
.......................................................................................TAGCAACTTCATACCGTGCTC......................................................................................	21	8	35.38	0.00	0.00	4.00	31.38	0.00
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	8	34.38	0.25	0.38	10.13	22.63	1.00
................................................AGCGAGGTATAGAGGTCCTACG............................................................................................................................	22	8	34.25	0.75	1.25	1.50	30.75	0.00
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	34.25	0.38	0.25	5.13	28.25	0.25
.......................................................................................TAGGAACTTCATAACGTGCTCT.....................................................................................	22	8	33.38	0.13	0.75	8.63	23.88	0.00
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	33.25	1.25	1.00	11.88	19.00	0.13
................................................AGCGAGGTATAGAGTTCCGACG............................................................................................................................	22	8	33.25	0.50	0.88	0.63	31.25	0.00
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	8	32.75	0.63	0.88	12.88	17.50	0.88
.......................................................................................TAGGAGCTTCATACCGTGCTC......................................................................................	21	8	32.63	0.13	0.00	15.25	17.25	0.00
.......................................................................................TAGGAAATTCATACCGTGCTC......................................................................................	21	8	32.13	0.00	0.13	5.50	26.50	0.00
.......................................................................................TAGGACCTTCATACCGTGCTCT.....................................................................................	22	8	32.00	0.13	0.00	19.88	12.00	0.00
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	31.75	1.63	0.38	10.13	16.38	3.25
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	31.50	0.75	0.38	7.50	19.63	3.25
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	31.38	0.38	0.13	12.63	18.25	0.00
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	30.38	0.13	0.63	6.50	22.25	0.88
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	29.50	1.50	0.75	1.13	26.13	0.00
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	29.38	0.75	0.13	14.75	13.75	0.00
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	29.13	0.75	0.75	12.63	14.50	0.50
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	28.50	0.25	0.63	2.75	24.88	0.00
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	27.88	0.25	1.38	16.25	9.88	0.13
.......................................................................................TAGGAACTTAATACCGCGCTCT.....................................................................................	22	8	27.38	0.00	0.13	8.38	18.88	0.00
.......................................................................................TAGGAACTTCATACCGTGCGCT.....................................................................................	22	8	27.25	0.13	0.13	5.00	22.00	0.00
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	27.00	0.38	0.38	9.25	15.88	1.13
.......................................................................................AAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	27.00	0.50	0.00	5.88	19.50	1.13
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	26.13	0.75	0.00	9.13	15.25	1.00
.......................................................................................TAGGAATTTCATACCGTGCTCT.....................................................................................	22	8	25.63	0.63	0.25	5.88	18.75	0.13
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	25.50	1.13	1.00	2.13	21.25	0.00
.......................................................................................TAGGAACTTCATACCGTCCTC......................................................................................	21	8	23.50	0.13	0.00	4.50	18.88	0.00
................................................AGCGAGGTATAGAGATCCTACG............................................................................................................................	22	8	23.50	0.00	0.75	0.63	22.13	0.00
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	22.88	0.88	0.25	6.00	15.13	0.63
.......................................................................................TAGGAACTTCAGACCGTGCTC......................................................................................	21	8	22.25	0.00	0.00	2.63	19.63	0.00
.......................................................................................TAGGAACTTCCTACCGTGCTCT.....................................................................................	22	8	22.13	0.00	1.00	5.38	15.75	0.00
................................................AGCGAGGTATACAGTTCCTACG............................................................................................................................	22	8	22.00	0.50	0.25	0.88	20.38	0.00
.......................................................................................TAGGAACTTCATACAGTGCTC......................................................................................	21	8	22.00	0.13	0.00	4.50	17.38	0.00
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	22.00	0.38	0.50	1.00	20.13	0.00
................................................AGCGAGGTATAGTGTTCCTACG............................................................................................................................	22	8	21.88	0.13	1.00	0.38	20.38	0.00
.......................................................................................TAGGAACTTCATACCGGGCTC......................................................................................	21	8	21.63	0.13	0.00	2.38	19.13	0.00
......................................................................................CTAGGAACTTCATACCGTGCTC......................................................................................	22	8	21.38	0.38	0.00	8.25	12.75	0.00
.......................................................................................TAGGAAGTTCATACCGTGCTCT.....................................................................................	22	8	21.13	0.00	0.25	2.00	18.88	0.00
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	20.63	0.50	0.13	9.38	9.63	1.00
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	20.50	1.88	0.38	0.88	17.38	0.00
.......................................................................................GAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	20.38	0.13	0.50	4.88	14.63	0.25
.......................................................................................TAGGAACTTCATGCCGTGCTCT.....................................................................................	22	8	20.00	0.50	0.50	5.38	9.00	4.63
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	19.75	3.00	0.25	9.13	7.38	0.00
.......................................................................................TAGGAACTGCATACCGTGCTC......................................................................................	21	8	18.88	0.00	0.00	1.38	17.50	0.00
.......................................................................................TAGGATCTTCATACCGTGCTCT.....................................................................................	22	8	18.88	0.00	0.13	16.50	2.25	0.00
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	18.63	0.88	0.38	6.50	10.75	0.13
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	18.38	1.63	0.00	3.88	9.50	3.38
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	18.38	2.13	0.25	1.00	15.00	0.00
.......................................................................................TAGGAACTTTATACCGTGCTCT.....................................................................................	22	8	18.38	0.38	0.38	5.13	11.50	1.00
................................................GGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	18.25	8.00	0.00	0.38	9.88	0.00
.......................................................................................TAGGAACTTCATACCGTGCTTT.....................................................................................	22	8	17.38	0.13	0.38	4.75	11.88	0.25
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	17.38	0.13	1.38	3.25	12.63	0.00

droWil1

CTGA---------AA--A-------TATGCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATTTAATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GTTACGAAAAC------------A----GCAA----------------------CAAGAAAAAAC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	6	170815.83	1509.00	17569.83	38694.00	113043.00
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	126047.17	10318.33	10612.17	105052.67	64.00
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	6	60508.50	16.67	235.67	2780.17	57476.00
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	6	13324.17	153.17	210.83	2665.50	10294.67
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	6	13033.50	4.50	15.17	74.33	12939.50
.......................................................................................TAGGAACTTAATACCGTGCTCC.....................................................................................	22	6	6419.33	0.00	0.33	5.83	6413.17
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	6	3898.50	3.67	4.00	400.83	3490.00
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	6	2636.67	19.83	33.67	173.67	2409.50
.......................................................................................TAGGAACTTCATACCGTGCTCG.....................................................................................	22	6	2166.50	0.50	2.33	3.50	2160.17
.......................................................................................TAGGAACTTAATACCGTGCTCG.....................................................................................	22	6	1087.17	0.00	0.17	0.17	1086.83
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	6	1052.00	50.83	8.00	986.67	6.50
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	6	1032.83	244.50	39.50	748.17	0.67
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	6	888.50	0.00	0.17	20.00	868.33
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	6	610.67	17.50	29.83	225.17	338.17
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	6	576.67	2.00	33.17	74.33	467.17
.......................................................................................TAGGAACTTAATACCTTGCTCT.....................................................................................	22	6	531.17	0.00	0.50	6.00	524.67
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	6	501.50	1.33	8.50	491.50	0.17
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	6	422.83	1.00	21.67	400.17	0.00
.......................................................................................TAGGAACTTCATGCCGTGCTCT.....................................................................................	22	6	414.67	1.00	8.83	26.83	378.00
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	6	407.00	8.83	46.33	351.83	0.00
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	6	379.00	93.83	25.50	257.83	1.83
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	6	359.67	0.33	53.17	59.67	246.50
................................................CGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	351.50	2.83	1.50	347.17	0.00
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	6	348.67	20.83	44.17	283.67	0.00
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	6	335.00	11.33	6.83	316.83	0.00
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	6	334.00	1.33	12.83	319.83	0.00
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	300.00	1.67	14.83	283.33	0.17
................................................AGCGAGGTATAAAGTTCCTACG............................................................................................................................	22	6	267.17	2.17	3.50	261.50	0.00
.......................................................................................TAGGAACTTCATACCGTGCC.......................................................................................	20	6	247.17	0.00	0.50	0.50	246.17
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	6	225.50	1.50	61.33	133.83	28.83
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	6	222.67	0.33	30.83	138.17	53.33
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	6	214.83	3.00	18.17	133.33	60.33
.......................................................................................TAGGAACTTAATACCxTGCTCT.....................................................................................	21	6	214.50	0.00	0.17	1.67	212.67
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	6	200.67	1.00	55.67	108.83	35.17
................................................TGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	200.00	1.67	0.83	197.50	0.00
.......................................................................................TAGGAACTTAATGCCGTGCTCT.....................................................................................	22	6	199.00	0.00	0.00	2.83	196.17
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	6	197.00	2.83	9.33	20.00	164.83
.......................................................................................TAGGAACTTCATACCxTGCTCT.....................................................................................	21	6	193.00	0.33	4.33	13.83	174.50
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	6	190.83	11.17	14.67	165.00	0.00
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	6	189.83	0.50	17.17	127.33	44.83
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	6	187.83	12.50	8.33	166.83	0.17
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	6	182.67	2.67	15.50	43.83	120.67
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	6	182.17	0.33	26.17	144.67	11.00
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	6	181.00	2.67	35.17	65.67	77.50
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	6	179.33	13.33	8.33	157.67	0.00
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	6	177.00	0.33	0.83	22.50	153.33
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	6	175.50	0.00	24.17	145.50	5.83
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	6	168.00	9.33	13.00	145.67	0.00
................................................AGCAAGGTATAGAGTTCCTACG............................................................................................................................	22	6	162.33	6.33	7.67	148.00	0.33
................................................AGCGAAGTATAGAGTTCCTACG............................................................................................................................	22	6	162.00	4.50	4.17	153.33	0.00
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	6	161.50	1.17	20.33	53.33	86.67
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	6	161.17	1.33	23.00	73.17	63.67
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	6	160.83	0.83	9.67	44.00	106.33
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	6	156.33	17.17	19.67	119.17	0.33
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	6	154.17	0.83	16.83	66.00	70.50
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	6	147.67	8.33	7.50	131.83	0.00
................................................AGCGAGGTATAGAATTCCTACG............................................................................................................................	22	6	147.17	2.67	3.00	141.33	0.17
.......................................................................................TAGGAACTTCATACCGTGC........................................................................................	19	6	146.67	0.50	1.00	18.17	127.00
................................................AGCGAGGTACAGAGTTCCTACG............................................................................................................................	22	6	145.83	10.00	7.33	128.50	0.00
................................................ATCGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	142.83	7.67	24.33	110.00	0.83
.......................................................................................TATGAACTTAATACCGTGCTCT.....................................................................................	22	6	141.33	0.00	1.17	4.17	136.00
................................................AACGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	138.33	5.83	4.00	128.50	0.00
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	6	137.83	14.50	9.33	113.83	0.17
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	6	134.83	1.17	8.83	39.83	85.00
.......................................................................................TAGTAACTTCATACCGTGCTCT.....................................................................................	22	6	134.50	1.50	29.00	44.67	59.33
................................................GGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	131.33	7.00	7.50	116.83	0.00
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	6	130.33	8.50	8.17	113.67	0.00
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	6	129.33	7.50	9.17	112.67	0.00
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	6	125.67	1.83	29.17	42.50	52.17
................................................AGCGATGTATAGAGTTCCTACG............................................................................................................................	22	6	124.33	3.00	21.00	100.33	0.00
.........................................................................................TGAACTTCATACCGTGCTCT.....................................................................................	20	6	123.33	0.00	8.83	21.83	92.67
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	6	123.00	1.00	20.83	56.83	44.33
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	6	120.00	8.50	9.33	101.83	0.33
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	6	118.67	1.17	9.67	64.33	43.50
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	6	117.33	3.83	20.33	93.17	0.00
.......................................................................................TAGGAACTTCATAACGTGCTCT.....................................................................................	22	6	115.67	0.17	8.67	100.67	6.17
................................................AGCGAGGTATCGAGTTCCTACG............................................................................................................................	22	6	114.50	3.67	4.67	106.17	0.00
................................................AGCTAGGTATAGAGTTCCTACG............................................................................................................................	22	6	114.33	4.17	25.33	84.83	0.00
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	6	114.00	15.17	10.00	88.83	0.00
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	6	112.50	2.00	14.17	45.17	51.17
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	6	112.50	7.83	9.00	95.67	0.00
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	6	112.00	1.83	17.00	51.67	41.50
.......................................................................................TAGGAACTTCATCCCGTGCTCT.....................................................................................	22	6	109.67	0.50	4.67	19.67	84.83
................................................AGTGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	108.17	6.83	7.67	93.67	0.00
................................................ACCGAGGTATAGAGTTCCTACG............................................................................................................................	22	6	101.83	8.50	6.00	87.33	0.00
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	6	100.67	6.50	9.17	83.83	1.17
.......................................................................................TAGAAACTTCATACCGTGCTCT.....................................................................................	22	6	100.50	0.67	8.67	67.00	24.17
................................................AGCGAGGTATAGAGTTTCTACG............................................................................................................................	22	6	99.83	4.67	3.83	91.33	0.00
................................................AGCGAGGTATAGAGTTCTTACG............................................................................................................................	22	6	99.67	2.83	2.33	94.33	0.17
.......................................................................................TAGGAACTTAATACCGGGCTCT.....................................................................................	22	6	99.00	0.00	0.00	1.67	97.33
.......................................................................................TAGGAACTTTATACCGTGCTCT.....................................................................................	22	6	98.17	1.33	7.33	28.50	61.00
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	6	98.17	1.00	15.17	51.50	30.50
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	6	98.00	29.67	3.83	63.67	0.83
................................................AGCGAGGTATAGATTTCCTACG............................................................................................................................	22	6	97.67	4.67	9.33	83.33	0.33
................................................AGCGAGGxxTAGAGTTCCTACG............................................................................................................................	20	6	95.00	4.50	8.67	81.83	0.00
................................................AGCGAGGTATAGAGATCCTACG............................................................................................................................	22	6	95.00	0.50	2.17	92.33	0.00
........................................................................................TAGAACTTCATACCGTGCTCT.....................................................................................	21	2	283.50	2.50	25.00	72.50	183.50
................................................AGCGAGGTATAGACTTCCTACG............................................................................................................................	22	6	94.50	4.67	5.00	84.67	0.17
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	6	94.33	4.50	8.00	81.83	0.00
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	6	92.67	0.83	10.00	30.83	51.00
.......................................................................................TAGGAACTTAATACCGTGCC.......................................................................................	20	6	92.50	0.00	0.00	0.00	92.50

droVir3

TGAA----------AATA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTATATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GA-----AG-TG-----------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	47705.00	2765.88	17801.88	789.00	4224.63	22123.63
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	26523.63	19760.75	5020.00	1725.00	5.63	12.25
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	10370.88	12.25	2040.63	7.50	151.63	8158.88
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	7275.00	296.00	3328.75	7.38	622.75	3020.13
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	3898.63	2.75	31.50	0.63	466.75	3397.00
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	1361.75	1.25	453.75	0.00	13.38	893.38
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	1273.13	32.00	278.00	0.38	141.25	821.50
.......................................................................................TAGGAACTTAATACCGTGCTCC.....................................................................................	22	8	1243.13	0.00	2.75	0.00	17.50	1222.88
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	1027.88	851.00	168.00	8.50	0.00	0.38
.......................................................................................TAGGAACTTCATACCGTGCTCG.....................................................................................	22	8	956.75	2.88	13.38	0.25	170.13	770.13
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	685.13	95.00	387.50	5.38	46.88	150.38
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	330.00	248.25	77.63	3.38	0.25	0.50
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	313.38	157.25	147.50	0.50	1.25	6.88
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	8	295.88	0.00	32.00	0.00	3.38	260.50
.......................................................................................TAGGAACTTAATACCGTGCTCG.....................................................................................	22	8	274.13	0.00	2.63	0.00	5.88	265.63
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	225.63	1.88	214.75	1.00	1.38	6.63
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	200.50	158.50	20.50	21.25	0.13	0.13
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	166.25	4.13	140.75	6.00	2.75	12.63
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	139.75	53.00	76.00	10.75	0.00	0.00
.......................................................................................TAGGAACTTCATACCGTGCC.......................................................................................	20	8	129.88	0.13	2.13	0.00	13.38	114.25
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	113.63	76.88	35.88	0.75	0.00	0.13
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	106.63	70.75	35.25	0.25	0.25	0.13
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	90.38	53.13	28.88	8.38	0.00	0.00
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	88.00	4.25	23.38	4.88	11.13	44.38
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	80.63	0.25	31.50	0.00	1.25	47.63
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	77.63	3.13	37.00	1.25	7.13	29.13
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	76.88	3.50	57.13	1.50	3.38	11.38
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	76.00	5.38	66.88	1.75	0.25	1.75
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	75.50	2.00	54.88	9.75	1.75	7.13
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	72.88	1.38	66.25	2.50	0.50	2.25
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	69.13	3.63	47.25	2.88	2.75	12.63
.......................................................................................TAGGAACGTCATACCGTGCTCT.....................................................................................	22	8	67.00	0.00	65.38	0.38	0.25	1.00
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	65.38	33.00	24.38	8.00	0.00	0.00
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	60.13	3.75	49.13	1.88	0.38	5.00
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	59.63	3.50	27.25	0.00	5.75	23.13
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	58.75	43.88	11.38	3.50	0.00	0.00
.......................................................................................TAGGAACTTCATACCGTGC........................................................................................	19	8	58.13	0.13	4.50	0.00	5.63	47.88
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	8	57.75	1.63	33.13	0.50	5.13	17.38
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	56.00	4.00	41.25	0.50	1.63	8.63
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	54.13	2.00	39.88	0.63	2.75	8.88
.......................................................................................TAGGAACTTCATACCGTGCG.......................................................................................	20	8	52.25	0.00	0.50	0.00	7.25	44.50
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	51.88	3.00	34.50	3.00	2.50	8.88
.......................................................................................TAGGAACTTCATAACGTGCTCT.....................................................................................	22	8	51.00	1.88	43.63	0.38	0.38	4.75
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	49.63	1.50	31.75	1.13	1.88	13.38
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	49.00	12.00	27.75	0.25	5.13	3.88
.......................................................................................TAGGAACTTCAGACCGTGCTCT.....................................................................................	22	8	46.00	0.50	44.13	0.75	0.13	0.50
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	44.63	23.63	13.75	7.25	0.00	0.00
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	8	44.50	20.13	22.00	2.38	0.00	0.00
.......................................................................................TAGGACCTTCATACCGTGCTCT.....................................................................................	22	8	44.38	0.25	42.50	0.38	0.25	1.00
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	43.75	7.75	22.13	13.88	0.00	0.00
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	42.38	1.50	10.63	4.00	9.75	16.50
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	42.00	7.13	26.75	0.25	2.63	5.25
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	41.25	1.25	29.75	1.13	1.75	7.38
.......................................................................................TAGGAAATTCATACCGTGCTC......................................................................................	21	8	41.25	0.00	40.00	0.00	0.13	1.13
................................................AGCGAGGTATAGAGATCCTACG............................................................................................................................	22	8	41.25	24.38	13.38	3.50	0.00	0.00
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	8	40.63	3.25	20.13	1.50	2.50	13.25
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	39.88	19.38	17.00	3.50	0.00	0.00
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	39.25	2.38	23.38	1.38	0.75	11.38
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	39.25	2.75	30.50	1.38	0.75	3.88
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	38.38	2.25	22.75	1.00	1.38	11.00
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	37.75	0.50	35.00	1.63	0.25	0.38
.......................................................................................TAGGAACTTAATACCGTGCC.......................................................................................	20	8	37.13	0.00	0.50	0.00	0.75	35.88
.......................................................................................TAGGAACTTAATACCTTGCTCT.....................................................................................	22	8	36.88	0.00	3.00	0.00	1.63	32.25
.......................................................................................TAGGAACTTCATGCCGTGCTCT.....................................................................................	22	8	36.75	1.88	14.13	0.88	3.00	16.88
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	35.88	28.38	6.75	0.75	0.00	0.00
................................................AGCGAGGTATAGAGGTCCTACG............................................................................................................................	22	8	35.75	10.13	13.88	11.75	0.00	0.00
.......................................................................................TAGGAACTTGATACCGTGCTCT.....................................................................................	22	8	34.50	0.25	30.75	0.13	0.25	3.13
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	34.38	19.38	10.88	4.00	0.13	0.00
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	33.13	2.00	15.50	1.00	2.00	12.63
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	33.13	21.63	7.75	3.75	0.00	0.00
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	33.00	24.13	6.63	2.25	0.00	0.00
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	32.63	2.75	25.50	1.38	0.50	2.50
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	31.63	17.00	11.13	3.50	0.00	0.00
.......................................................................................TAGGAACTTTATACCGTGCTCT.....................................................................................	22	8	31.25	1.75	15.38	0.63	1.38	12.13
.......................................................................................TAGGAACTTCATACCGCGCTC......................................................................................	21	8	31.00	0.63	28.75	0.00	0.25	1.38
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	31.00	8.38	9.50	13.13	0.00	0.00
................................................AGCGAGGTAGAGAGTTCCTACG............................................................................................................................	22	8	30.25	0.63	28.38	1.25	0.00	0.00
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	29.88	2.75	18.88	1.25	1.00	6.00
.......................................................................................TAGGAAATTAATACCGTGCTCT.....................................................................................	22	8	29.75	0.00	27.00	0.00	0.00	2.75
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	29.38	4.88	12.75	1.00	1.00	9.75
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	27.63	9.25	14.25	4.13	0.00	0.00
................................................AGCGAGGTATAGAGTTCCGACG............................................................................................................................	22	8	27.63	2.25	21.63	3.75	0.00	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCTC....................................................................................	23	8	27.25	2.00	8.75	0.63	7.75	8.13
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	27.13	15.88	9.25	2.00	0.00	0.00
.......................................................................................TAGGAACTTCATACCxTGCTCT.....................................................................................	21	8	26.13	1.25	1.00	0.13	4.00	19.75
.......................................................................................TAGGAACTTCATACCGTGCTCTG....................................................................................	23	8	25.38	2.88	17.88	0.13	0.75	3.75
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	25.13	0.25	19.75	1.50	0.63	3.00
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	8	24.50	15.25	6.75	2.50	0.00	0.00
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	23.88	7.88	14.25	1.75	0.00	0.00
................................................AGCGAGGTATAGAGTTCC................................................................................................................................	18	8	23.63	0.88	12.50	0.13	1.13	9.00
.......................................................................................TAGGAACTTCATACCGTGCGCT.....................................................................................	22	8	23.50	0.63	19.13	0.63	0.50	2.63
.......................................................................................TAGGAACTGCATACCGTGCTCT.....................................................................................	22	8	23.38	0.00	22.75	0.25	0.13	0.25
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	23.13	1.25	14.88	0.75	0.63	5.63
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	8	23.13	1.00	8.75	2.00	3.38	8.00
................................................AGCGAGGTATACAGTTCCTACG............................................................................................................................	22	8	22.38	8.75	7.38	6.25	0.00	0.00
........................................................................................AGGAACTTCATACCGTGCTCT.....................................................................................	21	8	22.13	1.38	7.38	0.13	2.50	10.75
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	8	21.75	15.13	4.50	2.00	0.13	0.00
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	8	21.63	13.88	6.38	1.38	0.00	0.00
.......................................................................................TAGGAACTTAATACCGCGCTCT.....................................................................................	22	8	21.25	0.00	16.00	0.00	0.13	5.13
..................................................CGAGGTATAGAGTTCCTACG............................................................................................................................	20	8	21.25	18.25	2.88	0.13	0.00	0.00
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	21.25	1.13	11.75	0.88	0.75	6.75

droMoj3

CCAA----------AGTA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTAAATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAACTCA-----AA-CAA-------------AAACGAAAACGAGC------------------------G	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	34599.00	15873.75	9049.13	6206.75	3469.38
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	25035.38	3360.25	10097.13	7101.00	4477.00
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	5700.75	337.63	3195.63	2154.13	13.38
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	1789.75	32.63	1090.38	646.25	20.50
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	1026.88	593.63	247.25	170.63	15.38
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	686.25	312.00	224.50	145.25	4.50
.......................................................................................TAGGAACTTAATACCGTGCTC......................................................................................	21	8	619.75	3.00	396.63	219.88	0.25
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	457.50	244.50	132.00	80.63	0.38
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	383.25	45.75	192.50	132.75	12.25
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	327.25	25.25	178.13	121.63	2.25
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	229.25	106.75	75.75	46.50	0.25
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	228.13	24.00	123.75	63.38	17.00
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	221.63	65.75	88.88	66.13	0.88
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	153.50	2.00	83.38	53.38	14.75
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	144.75	64.00	34.00	42.38	4.38
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	106.75	2.25	58.13	41.38	5.00
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	97.63	0.88	19.00	67.38	10.38
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	89.13	23.00	41.50	16.38	8.25
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	86.25	6.50	35.38	34.13	10.25
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	84.00	4.75	42.25	28.50	8.50
.......................................................................................TAGGAACTTCATACCGTGCTCTC....................................................................................	23	8	83.00	21.25	34.38	26.13	1.25
.......................................................................................TAGCAACTTCATACCGTGCTCT.....................................................................................	22	8	70.25	1.63	39.13	27.13	2.38
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	65.25	27.00	18.88	15.88	3.50
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	63.13	17.25	20.13	17.50	8.25
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	62.25	0.25	29.00	16.25	16.75
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	58.50	3.13	26.75	19.75	8.88
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	58.25	5.13	29.38	15.38	8.38
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	58.13	1.88	25.63	17.75	12.88
.......................................................................................TAGGAACTTCCTACCGTGCTCT.....................................................................................	22	8	57.50	0.25	9.13	35.88	12.25
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	56.00	3.25	28.25	13.13	11.38
.......................................................................................TAGGAACGTCATACCGTGCTCT.....................................................................................	22	8	54.63	0.13	34.13	18.50	1.88
................................................AGCGAGGTATAGAGGTCCTACG............................................................................................................................	22	8	51.75	2.63	16.63	18.88	13.63
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	51.13	3.00	18.00	22.25	7.88
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	50.50	2.75	17.38	22.63	7.75
................................................AGCGAGGTATAGAGTTCCTACGC...........................................................................................................................	23	8	49.88	24.63	13.50	10.88	0.88
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	47.75	3.13	10.88	30.13	3.63
.......................................................................................TAGGTACTTCATACCGTGCTCT.....................................................................................	22	8	45.00	0.63	15.38	18.75	10.25
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	44.88	5.75	21.13	15.00	3.00
.......................................................................................TAGGAACTTCATACCGAGCTCT.....................................................................................	22	8	44.50	0.75	29.75	9.75	4.25
.......................................................................................TAGGAACTTCATACCGCGCTC......................................................................................	21	8	43.50	0.13	26.63	16.63	0.13
................................................AGCGAGGTATAGAGTTCCTACGTT..........................................................................................................................	24	8	43.25	21.75	11.38	10.00	0.13
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	43.00	4.88	15.13	10.75	12.25
.......................................................................................TAGGAACTTCATAACGTGCTCT.....................................................................................	22	8	42.13	1.00	13.13	21.75	6.25
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	41.25	1.00	21.00	9.88	9.38
................................................GGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	41.13	16.38	12.50	8.00	4.25
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	40.75	9.50	16.50	12.13	2.63
.......................................................................................TAGGAACTTCGTACCGTGCTCT.....................................................................................	22	8	40.63	1.88	17.00	14.38	7.38
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	40.25	14.25	14.88	9.38	1.75
................................................AGCGAGGTATAGTGTTCCTACG............................................................................................................................	22	8	40.13	0.25	20.75	13.75	5.38
................................................AGCGAGGTATAGAGTTCCGACG............................................................................................................................	22	8	40.00	0.50	18.00	12.13	9.38
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	8	39.88	12.13	22.00	4.00	1.75
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	37.50	10.88	14.13	8.00	4.50
.......................................................................................TAGGAACTTAATACCGTGCTCTT....................................................................................	23	8	37.13	0.38	26.25	10.50	0.00
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	36.13	4.25	15.88	12.38	3.63
.......................................................................................TAGGAACTTCATACCGTGCTCTA....................................................................................	23	8	36.00	3.63	18.88	12.63	0.88
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	35.25	7.63	16.63	7.88	3.13
................................................AGCGAGGTATAGAGTTCCTC..............................................................................................................................	20	8	34.50	11.63	14.88	8.00	0.00
.......................................................................................TAGGAACTTCATACCATGCTCT.....................................................................................	22	8	33.38	1.50	10.88	15.13	5.88
................................................AGCGAGGTATAGAGATCCTACG............................................................................................................................	22	8	33.38	1.13	16.63	10.75	4.88
................................................AGCGAGGTATAGAGTTCCTACGA...........................................................................................................................	23	8	32.63	11.50	10.75	10.38	0.00
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	8	32.38	7.38	10.38	10.25	4.38
.......................................................................................TAGGAACTTCAGACCGTGCTCT.....................................................................................	22	8	32.38	0.13	19.13	9.75	3.38
.......................................................................................TAGGAACTTCATACCGTGCTCTG....................................................................................	23	8	31.88	2.00	17.00	12.50	0.38
.......................................................................................TGGGAACTTCATACCGTGCTCT.....................................................................................	22	8	31.63	3.00	12.88	11.25	4.50
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	8	31.38	6.50	13.00	7.50	4.38
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	31.13	1.13	9.88	15.50	4.63
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	30.75	5.50	12.63	8.13	4.50
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	8	30.38	6.63	12.50	8.38	2.88
................................................AGCGAGGTATAGAGTTCCTACGTC..........................................................................................................................	24	8	30.00	20.38	5.63	4.00	0.00
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	29.75	1.25	13.75	10.38	4.38
.......................................................................................TAGGAACTTCATACTGTGCTCT.....................................................................................	22	8	29.75	2.88	14.50	7.63	4.75
.......................................................................................TAGGAACTTCATACCGGGCTCT.....................................................................................	22	8	29.63	0.38	14.50	10.13	4.63
.......................................................................................TAGGAACTTAATACCGTGCT.......................................................................................	20	8	29.13	0.13	19.63	9.38	0.00
................................................AGCGAGGTACAGAGTTCCTACG............................................................................................................................	22	8	28.63	6.63	12.75	6.63	2.63
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	28.63	1.00	13.13	10.88	3.63
.......................................................................................TAGGAACTTCATACCGTGCTT......................................................................................	21	8	28.38	1.88	14.63	11.88	0.00
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	28.13	1.25	12.63	13.13	1.13
................................................AGCGAGGTATCGAGTTCCTACG............................................................................................................................	22	8	27.75	1.38	7.13	14.88	4.38
.......................................................................................CAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	27.38	1.50	13.75	8.13	4.00
................................................AGCGAGGTATACAGTTCCTACG............................................................................................................................	22	8	27.25	3.38	11.38	9.50	3.00
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	27.25	6.25	9.63	9.63	1.75
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	27.13	2.00	11.88	9.13	4.13
................................................AGCGTGGTATAGAGTTCCTACG............................................................................................................................	22	8	27.00	2.75	11.88	7.50	4.88
.......................................................................................TAGGAACTTCATACCGTGATCT.....................................................................................	22	8	27.00	1.25	10.88	9.00	5.88
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	25.00	1.00	9.00	7.50	7.50
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	24.88	1.63	13.75	4.50	5.00
................................................AGCGAGGTATAGAGTTCTTACG............................................................................................................................	22	8	24.63	3.88	13.13	5.00	2.63
................................................ATCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	23.50	20.13	2.13	1.25	0.00
................................................AGCGAGGTATAGAGTTCCTGCG............................................................................................................................	22	8	23.50	3.75	9.63	4.88	5.25
.......................................................................................TCGGAACTTCATACCGTGCTCT.....................................................................................	22	8	23.38	0.63	5.50	15.00	2.25
................................................AGCAAGGTATAGAGTTCCTACG............................................................................................................................	22	8	23.00	8.38	5.00	6.00	3.63
..................................................CGAGGTATAGAGTTCCTACG............................................................................................................................	20	8	22.63	15.88	3.38	3.25	0.13
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	21.50	1.25	10.75	6.00	3.50
.......................................................................................TAGGAACTTCATATCGTGCTCT.....................................................................................	22	8	21.38	1.75	9.38	5.88	4.38
.......................................................................................TAGGAATTTCATACCGTGCTCT.....................................................................................	22	8	19.38	1.13	11.50	4.00	2.75
.......................................................................................TAGCAACTTCATACCGTGCTC......................................................................................	21	8	19.38	0.13	11.63	7.63	0.00
................................................AGCGAGGTATAGAGTTTCTACG............................................................................................................................	22	8	19.25	5.13	6.25	4.25	3.63
................................................AGCGATGTATAGAGTTCCTACG............................................................................................................................	22	8	19.13	13.00	2.63	2.38	1.13
.......................................................................................TAGGAACTTCATCCCGTGCTCT.....................................................................................	22	8	19.13	0.38	7.25	9.38	2.13
................................................AGTGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	19.00	7.63	5.75	3.63	2.00
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	18.75	1.50	6.38	8.00	2.88

droGri2

CAAA----------AATA-------T--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAAATTTAAATACTCATAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAAC-AA-----AG-AAA---------------------------------------------------C	Size	Hit Count	Total Norm	V109 Male body
................................................AGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	6110.13	6110.13
.......................................................................................TAGGAACTTCATACCGTGCTCT.....................................................................................	22	8	1516.88	1516.88
.......................................................................................TAGGAACTTCATACCGTGCTC......................................................................................	21	8	95.88	95.88
................................................AGCGAGGTATAGAGTTCATACG............................................................................................................................	22	8	62.63	62.63
................................................AGCGAGGTATAGAGTTCCTAC.............................................................................................................................	21	8	56.38	56.38
................................................AGCGAGGTATAGAGTTCTTACG............................................................................................................................	22	8	39.50	39.50
................................................AGCGAGGTATAGAGTTCGTACG............................................................................................................................	22	8	39.25	39.25
................................................AGCGAGGTATAGAGTTCCT...............................................................................................................................	19	8	29.50	29.50
.......................................................................................TAGGAACTTCATACCGTGCTCTT....................................................................................	23	8	22.13	22.13
................................................AGCGAGGTCTAGAGTTCCTACG............................................................................................................................	22	8	21.25	21.25
................................................AGCGAGGCATAGAGTTCCTACG............................................................................................................................	22	8	20.88	20.88
.................................................GCGAGGTATAGAGTTCCTACG............................................................................................................................	21	8	17.50	17.50
................................................AGCGAGGTATAGAGTTCCTA..............................................................................................................................	20	8	17.25	17.25
................................................AGCGAGGTATAGAGTTCCTACT............................................................................................................................	22	8	17.25	17.25
................................................AGAGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	17.25	17.25
................................................AGCGAGGTTTAGAGTTCCTACG............................................................................................................................	22	8	16.75	16.75
.......................................................................................TAGGAACTTCATACCGTCCTCT.....................................................................................	22	8	16.25	16.25
.......................................................................................TAGGAACTTCATACCGTGCT.......................................................................................	20	8	16.00	16.00
................................................AGCGAGATATAGAGTTCCTACG............................................................................................................................	22	8	15.75	15.75
................................................AGTGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	15.13	15.13
.......................................................................................TAGGAACTTCATACCGTACTCT.....................................................................................	22	8	15.13	15.13
................................................AGCGAGCTATAGAGTTCCTACG............................................................................................................................	22	8	14.50	14.50
................................................AGCGAGGTATAGAGTTCCTACC............................................................................................................................	22	8	14.13	14.13
................................................AGCGAGGTATAGAGTTCCTACGT...........................................................................................................................	23	8	14.00	14.00
................................................AGCGCGGTATAGAGTTCCTACG............................................................................................................................	22	8	13.13	13.13
................................................AGCGAAGTATAGAGTTCCTACG............................................................................................................................	22	8	13.00	13.00
................................................AGCGACGTATAGAGTTCCTACG............................................................................................................................	22	8	12.75	12.75
................................................AGCGAGGTGTAGAGTTCCTACG............................................................................................................................	22	8	11.25	11.25
.......................................................................................TAGGAACTTCATACCGTTCTCT.....................................................................................	22	8	9.00	9.00
................................................AGCGAGGTATAGAGTTCCTACA............................................................................................................................	22	8	9.00	9.00
................................................AGCGAGGTATAGAGTCCCTACG............................................................................................................................	22	8	8.13	8.13
................................................AGCGAGGAATAGAGTTCCTACG............................................................................................................................	22	8	8.00	8.00
................................................AGGGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	7.38	7.38
................................................AGCGAGGTATAGAGTTCCTAAG............................................................................................................................	22	8	7.00	7.00
................................................AGCGATGTATAGAGTTCCTACG............................................................................................................................	22	8	6.75	6.75
................................................AGCGAGGTATACAGTTCCTACG............................................................................................................................	22	8	6.25	6.25
................................................AGCGAGGTATAGCGTTCCTACG............................................................................................................................	22	8	6.13	6.13
.......................................................................................TAGGAACTCCATACCGTGCTCT.....................................................................................	22	8	5.75	5.75
................................................AGCGAGGTACAGAGTTCCTACG............................................................................................................................	22	8	5.75	5.75
................................................AGCGAGGTATAGAGCTCCTACG............................................................................................................................	22	8	5.63	5.63
................................................AGCGAGGTATAGAGTTCCCACG............................................................................................................................	22	8	5.63	5.63
................................................AGCGAGGGATAGAGTTCCTACG............................................................................................................................	22	8	5.50	5.50
.......................................................................................TAGGAAATTCATACCGTGCTCT.....................................................................................	22	8	5.50	5.50
.......................................................................................TAGGAACTTAATACCGTGCTCT.....................................................................................	22	8	5.25	5.25
..................................................CGAGGTATAGAGTTCCTACG............................................................................................................................	20	8	5.25	5.25
................................................AGCGAGGTATAGAGTTCCTCCG............................................................................................................................	22	8	5.13	5.13
................................................AGCGAGTTATAGAGTTCCTACG............................................................................................................................	22	8	5.13	5.13
................................................ATCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	5.13	5.13
.......................................................................................TAAGAACTTCATACCGTGCTCT.....................................................................................	22	8	4.75	4.75
.......................................................................................TAGGCACTTCATACCGTGCTCT.....................................................................................	22	8	4.75	4.75
.......................................................................................TAGGACCTTCATACCGTGCTCT.....................................................................................	22	8	4.75	4.75
................................................AGCGGGGTATAGAGTTCCTACG............................................................................................................................	22	8	4.63	4.63
................................................ACCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	4.63	4.63
................................................AGCCAGGTATAGAGTTCCTACG............................................................................................................................	22	8	4.13	4.13
................................................AGCGAGGTATAGAGTTACTACG............................................................................................................................	22	8	4.13	4.13
................................................AGCGAGGTATAAAGTTCCTACG............................................................................................................................	22	8	3.88	3.88
.......................................................................................TAGGAATTTCATACCGTGCTCT.....................................................................................	22	8	3.75	3.75
................................................AGCGAGGTATAGACTTCCTACG............................................................................................................................	22	8	3.75	3.75
.......................................................................................TAGGAACTTCATACCGTGCTCC.....................................................................................	22	8	3.63	3.63
................................................AGCTAGGTATAGAGTTCCTACG............................................................................................................................	22	8	3.50	3.50
................................................AGCGAGGTATAGAATTCCTACG............................................................................................................................	22	8	3.38	3.38
.......................................................................................TACGAACTTCATACCGTGCTCT.....................................................................................	22	8	3.38	3.38
.......................................................................................TATGAACTTCATACCGTGCTCT.....................................................................................	22	8	3.38	3.38
................................................AGCGAGGTATCGAGTTCCTACG............................................................................................................................	22	8	3.25	3.25
................................................AGCGAGGTATATAGTTCCTACG............................................................................................................................	22	8	3.25	3.25
................................................AGCGAGGTATAGAGTTCCTATG............................................................................................................................	22	8	3.00	3.00
.......................................................................................TAGGAGCTTCATACCGTGCTCT.....................................................................................	22	8	3.00	3.00
................................................GGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	3.00	3.00
.......................................................................................TAGGAACTACATACCGTGCTCT.....................................................................................	22	8	3.00	3.00
.......................................................................................TAGGAACTTCATACCTTGCTCT.....................................................................................	22	8	2.75	2.75
................................................AGCGAGGTATGGAGTTCCTACG............................................................................................................................	22	8	2.75	2.75
................................................AGCAAGGTATAGAGTTCCTACG............................................................................................................................	22	8	2.63	2.63
................................................AACGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	2.63	2.63
.......................................................................................TAGGAACTTCATACCGTGCCCT.....................................................................................	22	8	2.38	2.38
................................................AGCGAGGTATAGGGTTCCTACG............................................................................................................................	22	8	2.25	2.25
................................................AGCGAGGTATAGAGTTTCTACG............................................................................................................................	22	8	2.25	2.25
................................................AGCGAGGTATAGATTTCCTACG............................................................................................................................	22	8	2.25	2.25
.......................................................................................TAGGAACTGCATACCGTGCTCT.....................................................................................	22	8	2.25	2.25
......................................................................................CTAGGAACTTCATACCGTGCTCT.....................................................................................	23	8	2.13	2.13
.......................................................................................TAGGAACTTCATACCGCGCTCT.....................................................................................	22	8	2.13	2.13
................................................AGCGAGGTATAGAGTTCCTACGTT..........................................................................................................................	24	8	2.00	2.00
.......................................................................................TAGGAACTTCATACAGTGCTCT.....................................................................................	22	8	2.00	2.00
................................................AGCGAGGxxTAGAGTTCCTACG............................................................................................................................	20	8	1.88	1.88
.......................................................................................TAGGAACTTCATACCCTGCTCT.....................................................................................	22	8	1.88	1.88
................................................AGCGTGGTATAGAGTTCCTACG............................................................................................................................	22	8	1.75	1.75
................................................CGCGAGGTATAGAGTTCCTACG............................................................................................................................	22	8	1.75	1.75
.......................................................................................TAGGAACTTCATACCGTGCTAT.....................................................................................	22	8	1.75	1.75
................................................AGCGAGGTATAGAGTTCCAACG............................................................................................................................	22	8	1.75	1.75
.......................................................................................TAGGATCTTCATACCGTGCTCT.....................................................................................	22	8	1.63	1.63
.......................................................................................TAGGAACCTCATACCGTGCTCT.....................................................................................	22	8	1.63	1.63
................................................AGCGAGGTATAGAGTTCCTACGA...........................................................................................................................	23	8	1.63	1.63
................................................AGCGAGGTATAGAGTTCCTGCG............................................................................................................................	22	8	1.63	1.63
.......................................................................................TAGGAACTTCACACCGTGCTCT.....................................................................................	22	8	1.63	1.63
.......................................................................................TCGGAACTTCATACCGTGCTCT.....................................................................................	22	8	1.50	1.50
.......................................................................................TAGGAAGTTCATACCGTGCTCT.....................................................................................	22	8	1.50	1.50
.......................................................................................TAGGGACTTCATACCGTGCTCT.....................................................................................	22	8	1.38	1.38
................................................AGCGAxGTATAGAGTTCCTACG............................................................................................................................	21	8	1.38	1.38
.......................................................................................TAGGAACTTCCTACCGTGCTCT.....................................................................................	22	8	1.25	1.25
.......................................................................................TAGGAACTTCATACCGTCCTC......................................................................................	21	8	1.25	1.25
.......................................................................................TAGGAACTTCATACCGTGCTCTTT...................................................................................	24	8	1.25	1.25
.......................................................................................TAGGAACTTCATACCGTGTTCT.....................................................................................	22	8	1.25	1.25

Generated: 04/20/2012 at 05:30:28 EDT

dme-mir-276a

chr3L:10358328-10358425 +

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup