dme-mir-276a-as- 12- and 20-way alignments

dme-mir-276a-as	chr3L:10358328-10358425 -	Novel
	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_intron

Legend:

   mature strand at position 10358379-10358400
   star strand at position 10358342-10358363
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:10358313-10358440 -	GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGG
droSim1	chr3L:9747980-9748107 -	GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGG
droSec1	super_0:2571151-2571278 -	GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGG
droYak2	chr3L:10348871-10348998 -	GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGC
droEre2	scaffold_4784:10353122-10353248 -	GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAA-A-------ATATCTTGC
droAna3	scaffold_13337:15274238-15274392 -	TG-ATTTTTTGGTTGAAGGGGAAACCAACTCCGCTTTAT---------------------GTT-----TTCGTTGATTTTAGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAATGTTAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAGAA-------ATATCTTGG
dp4	chrXR_group6:8756386-8756507 -	T-------------------------------------------------------------------TTCGTTGTCTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAATATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAAATACACACATCTTCT
droPer1	super_27:1191198-1191319 -	T-------------------------------------------------------------------TTCGTTGTCTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAATATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAAATACACACATCTTCT
droWil1	scaffold_181024:222599-222731 +	TT-TTTTCTTG-TTGC---------T----------------------------------GTTTTCGTAACGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATTAAATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATATTTT--
droVir3	scaffold_13049:16143973-16144101 -	TG-TGCTGC----------------GCGTTT----------------------------------CACTTCGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTATATAAATTGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATATTTTCA
droMoj3	scaffold_6680:20621783-20621940 +	GC-TGCCTC----------------GCACTGCGCTTTGCTTTGCGCTCGTTTTCGTTTTTGTT-----TGAGTTGTGTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTATTTAAATTGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATACTTTGG
droGri2	scaffold_15110:12521893-12522042 +	CGTATTTGT----TG-------ATCGCATTCCGCTTAAGGTTGGGTT-------------------TCTTTGTTGTGTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTATGAGTATTTAAATTTAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATATTTTTG

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:10358313-10358440 -	NA	G-GATTTTTGCATT------CA--------------CTT------G---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
droSim1	chr3L:9747980-9748107 -	3	G-GATTTTTGCATT------CA--------------CTT------G---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
droSec1	super_0:2571151-2571278 -	3	G-GATTTTTGCATT------CA--------------CTT------G---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
droYak2	chr3L:10348871-10348998 -	4	G-GATTTTTGCATT------CA--------------CTT------G---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GC
droEre2	scaffold_4784:10353122-10353248 -	3	G-GATTTTTGCATT------CA--------------CTT------G---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAA-AA-------TATCT----------T-GC
droEug1	scf7180000409711:2221453-2221580 -	3	G-GATTTTTGCATT------TA--------------GTT------T---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GC
droBia1	scf7180000302428:7389635-7389762 +	1	G-GATTTTTGCATT------TA--------------CTT------T---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------C-GG
droTak1	scf7180000415515:147698-147825 +	4	G-GATTTTTGCATT------TA--------------CTT------T---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
droEle1	scf7180000490564:1195760-1195887 -	4	A-GATTTTTGCATT------TA--------------CTT------C---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
droRho1	scf7180000778277:12893-13020 -	3	G-GATTTTTGCATT------TA--------------CTT------C---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
droFic1	scf7180000453841:693857-693984 +	1	G-GATTTTAGCATT------TA--------------CTT------T---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTAT--AATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
droKik1	scf7180000302334:36986-37129 +	1	GGGAACTTTGCATT-------ATTTTCTTAAATTTTCTT------T---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTATAATGTGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------C-GG
droAna3	scaffold_13337:15233391-15233502 -	3	A-AACTTAAGGATA------CA--------------CTT------TCATGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTAGTTTAA--GTGGCACGTAGGAACTCTATACCTCGCTGATGGCAAA----------------------------------------
droBip1	scf7180000395933:129274-129384 -	3	--------------------------------------------------TTGATTTTAGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTATAATGTTAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAA-------TATCT----------T-GG
dp4	chrXR_group6:8756376-8756506 -	4	--------------------------------------T------C---GTTGTCTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTATAATATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAAATACACACATCTTCTCCTCCGTT-CG
droPer1	super_27:1191188-1191318 -	3	--------------------------------------T------C---GTTGTCTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTATAATATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAAATACACACATCTTCTCCTCCGTT-CG
droWil1	scaffold_181024:222598-222734 +	3	G-TTTTTT--C---TTGTTG--CTG-----------TTTTCGTAAC---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TTTATTAAATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGCATA-------T--TT----------TCAG
droVir3	scaffold_13049:16143973-16144088 -	4	C--------------------A--------------CTT------C---GTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TATATAAATTGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC--A-------TATTT----------T-CA
droMoj3	scaffold_6680:20621809-20621940 +	3	C-GCTCGTT-T---TCGTTT--TTG-----------TTTG-----A---GTTGTGTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAG---TATTTAAATTGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC--A-------TACTT----------T-GG
droGri2	scaffold_15110:12521926-12522042 +	1	G-T-----------------TT--------------CTT------T---GTTGTGTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTATGAG---TATTTAAATTTAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC--A-------TATTT----------T-TG

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGG

Size

Hit Count

Total Norm

droSim1

GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................................................................................................................TAGGAACTTCATACCTCG........................................	18	6	0.33	0.00	0.33	0.00	0.00
...................................................................................................................................TAAGAACTCTATACCTAG........................................	18	4	0.25	0.00	0.25	0.00	0.00
..........................................................................GTTTTTTGGTCTTTCGAG.................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50

droSec1

GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................................AGCGCGGTATAAAGTTCCTACG...........................................................................	22	8	0.63	0.38	0.00	0.25
............................................................................................AGCGCGGTATGGAGTTCCTACG...........................................................................	22	6	0.33	0.00	0.17	0.17
............................................................................................AGCAAGGTATAAAGTTCCTACG...........................................................................	22	8	0.13	0.00	0.00	0.13
.........................................................................................................................................CTCTATACCTCGCTGATGGCA...............................	21	4	0.25	0.00	0.00	0.25
............................................................................................AGCAAGGTATGGAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.17
............................................................................................AGCACGGTATAGAGTTCCTACG...........................................................................	22	8	0.13	0.00	0.00	0.13
............................................................................................AGCGCGGTATCAAGTTCCTACG...........................................................................	22	4	0.25	0.00	0.00	0.25

droYak2

GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAA-------ATATCTTGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................................................AGCGCGGTATAAAGTTCCTACG...........................................................................	22	8	0.50	0.38	0.00	0.00	0.13	0.00
............................................................................................AGCGCGGTATGGAGTTCCTACG...........................................................................	22	6	0.50	0.17	0.00	0.00	0.33	0.00
............................................................................................AGCAAGGTATAAAGTTCCTACG...........................................................................	22	8	0.13	0.00	0.00	0.00	0.13	0.00
...................................................................................................................................TAGGAACTTTATACCGCGCT......................................	20	8	0.13	0.00	0.00	0.00	0.13	0.00
...................................................................................................................................TAGGAACTTCATACCTCG........................................	18	6	0.17	0.00	0.00	0.00	0.17	0.00
............................................................................................AGCAAGGTATGGAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.00	0.17	0.00
...................................................................................................................................TAGGAACTTCATACCTCGCT......................................	20	6	0.17	0.00	0.00	0.00	0.17	0.00
............................................................................................AGCACGGTATAGAGTTCCTACG...........................................................................	22	8	0.13	0.00	0.00	0.00	0.13	0.00
............................................................................................AGCGCGGTATTAAGTTCCTACG...........................................................................	22	4	0.25	0.00	0.00	0.00	0.25	0.00
............................................................................................AGCGAGGTATGAAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.00	0.17	0.00
............................................................................................AGCGCGGTATGCAGTTCCTACG...........................................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
...................................................................................................................................TAGGAACTGTATACCGCGCT......................................	20	4	0.25	0.00	0.25	0.00	0.00	0.00

droEre2

GG-ATTTTT----------------GCATT-----------------------------------CACTTGGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAA--TGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAA-A-------ATATCTTGC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................................AGCACGGTATAAAGTTCCTCCG...........................................................................	22	4	0.25	0.25	0.00	0.00	0.00
................................................................................................................................................................AACCAGGTGAA-A-------AAATCT...	18	2	0.50	0.00	0.00	0.50	0.00
...................................................................................................................................TAGGAACTTCATACCTCGCTG.....................................	21	4	0.25	0.00	0.25	0.00	0.00
...................................................................................................................................TAGGAACTTTATACCTCGCTCA....................................	22	4	0.25	0.00	0.25	0.00	0.00
............................................................................................AGCGCGGTATCAAGTTCCTACG...........................................................................	22	4	0.25	0.25	0.00	0.00	0.00

droAna3

TG-ATTTTTTGGTTGAAGGGGAAACCAACTCCGCTTTAT---------------------GTT-----TTCGTTGATTTTAGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAATGTTAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAGAA-------ATATCTTGG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................................AGCGCGGTATAAAGTTCCTACG...........................................................................	22	8	0.50	0.00	0.00	0.50	0.00
............................................................................................AGCGAGGTATGAAGTTCCTACG...........................................................................	22	6	0.33	0.00	0.33	0.00	0.00
............................................................................................AGCACGGTATAGAGTTCCTACG...........................................................................	22	8	0.25	0.00	0.13	0.13	0.00
............................................................................................AGCACGGTATAAAGTTCCTACG...........................................................................	22	4	0.25	0.00	0.00	0.25	0.00
............................................................................................AGCACGGTATACAGTTCCTACG...........................................................................	22	4	0.25	0.00	0.00	0.25	0.00
............................................................................................AGCGTGGTATGAAGTTCCTACG...........................................................................	22	2	0.50	0.00	0.00	0.50	0.00
...................................................................................................................................TAGGAACTTTATACCGCGCT......................................	20	8	0.13	0.00	0.00	0.13	0.00
...................................................................................................................................TAGGAACTTAATACCTCGCT......................................	20	6	0.17	0.00	0.00	0.17	0.00
...................................................................................................................................TAGGAACTCCATACCTCGCTC.....................................	21	4	0.25	0.00	0.00	0.25	0.00
............................................................................................AGCGCGGTATGGAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.17	0.00
............................................................................................AGCATGGTATAAAGTTCCTACG...........................................................................	22	4	0.25	0.00	0.00	0.25	0.00
.............................................................................................................................................................AAAAACCAGGTxAGCA-------ATA......	18	2	0.50	0.00	0.00	0.50	0.00

dp4

T-------------------------------------------------------------------TTCGTTGTCTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAATATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAAATACACACATCTTCT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................................................................ACGAGTTTATTATATAAAC...........................................................	19	2	0.50	0.00	0.00	0.50	0.00
...................................................................................................................................TTGAAACTCTATACCTCGCTGA....................................	22	4	0.25	0.00	0.25	0.00	0.00

droPer1

T-------------------------------------------------------------------TTCGTTGTCTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATAATATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAAAAAAATACACACATCTTCT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................................................AGCACGGTATAGAGTTCCTACG...........................................................................	22	8	0.38	0.00	0.00	0.00	0.38	0.00
............................................................................................AGCGCGGTATAAAGTTCCTACG...........................................................................	22	8	0.25	0.00	0.00	0.00	0.25	0.00
...................................................................................................................................TAGGAACTCCATACCTCGCTC.....................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
...................................................................................................................................TAGGAACTATATACCGCGCTG.....................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
............................................................................................AGCACGGTATCGAGTTCCTACG...........................................................................	22	4	0.25	0.00	0.00	0.00	0.25	0.00
...................................................................................................................................TAGGAACTTTATACCTCGCTC.....................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
...................................................................................................................................TAGGAACTTTAGACCTCGCTGA....................................	22	4	0.25	0.00	0.00	0.25	0.00	0.00
............................................................................................AGCACGGTATAAAGTTCCT..............................................................................	19	4	0.25	0.00	0.00	0.00	0.25	0.00
............................................................................................................................................................CAAAATCCAGGTAAAAAAC..............	19	2	0.50	0.00	0.50	0.00	0.00	0.00
...................................................................................................................................TAGGAACTTCATACCTCGCT......................................	20	6	0.17	0.00	0.00	0.00	0.17	0.00
...................................................................................................................................AAGGAGCTCTATACCTCGCTG.....................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
............................................................................................AGCGAGGTATGAAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.00	0.17	0.00
............................................................................................AGCACGGTATAGAGTTCCT..............................................................................	19	8	0.13	0.00	0.00	0.00	0.13	0.00
............................................................................................AGCGCGGTATGGAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.17	0.00	0.00

droWil1

TT-TTTTCTTG-TTGC---------T----------------------------------GTTTTCGTAACGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTTTATTAAATGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATATTTT--	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................................AGCGCGGTATAAAGTTCCTACG...........................................................................	22	8	1.25	0.00	0.13	1.13	0.00
............................................................................................AGCACGGTATAGAGTTCCTACG...........................................................................	22	8	0.63	0.00	0.00	0.63	0.00
............................................................................................AGCGAGGTATGAAGTTCCTACG...........................................................................	22	6	0.33	0.00	0.00	0.33	0.00
............................................................................................AGCAAGGTATAAAGTTCCTACG...........................................................................	22	8	0.25	0.00	0.00	0.25	0.00
............................................................................................AGCAAGGTATGGAGTTCCTACG...........................................................................	22	6	0.33	0.00	0.00	0.33	0.00
...................................................................................................................................TAGGAACTTAATACCTCG........................................	18	6	0.17	0.00	0.00	0.00	0.17
............................................................................................AGCGCGGTATGGAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.17	0.00
TT-TTTTTTTG-TTGC---------T----------------------------------GTTTTCG..........................................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00

droVir3

TG-TGCTGC----------------GCGTTT----------------------------------CACTTCGTTGTTTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTATATAAATTGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATATTTTCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................AGCACGGTATAGAGTTCCTACG...........................................................................	22	8	0.13	0.00	0.13	0.00	0.00	0.00
...................................................................................................................................TAGGAACTTTATACCTxGCTGAT...................................	22	4	0.25	0.00	0.25	0.00	0.00	0.00
............................................................................................AGCGCGGTATAAAGTTCCTACG...........................................................................	22	8	0.13	0.00	0.13	0.00	0.00	0.00

droMoj3

GC-TGCCTC----------------GCACTGCGCTTTGCTTTGCGCTCGTTTTCGTTTTTGTT-----TGAGTTGTGTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTACGAGTATTTAAATTGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATACTTTGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................AGCGCGGTATAAAGTTCCTACG...........................................................................	22	8	0.63	0.00	0.38	0.25	0.00
...................................................................................................................................TAGGAACTTCATACCTCGCT......................................	20	6	0.33	0.00	0.33	0.00	0.00
..................................................TTTTGTTTTTATT-----TGAGTT...................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
............................................................................................AGCGCGGTATGGAGTTCCTACG...........................................................................	22	6	0.17	0.00	0.00	0.17	0.00
............................................................................................AGCGAGGTATGAAGTTCCTAC............................................................................	21	6	0.17	0.00	0.00	0.17	0.00
............................................................................................AGCACGGTTTAAAGTTCCT..............................................................................	19	4	0.25	0.00	0.00	0.00	0.25
...................................................................................................................................TAGGAACTCCATACCGCGCTG.....................................	21	4	0.25	0.00	0.00	0.25	0.00
.....................................................................GAGTTGTGTTTTGGCATT......................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
............................................................................................AGCAAGGTATAAAGTTCCT..............................................................................	19	8	0.13	0.00	0.13	0.00	0.00
.............................................................................................GCGCGGTATGGAGTTCCTACG...........................................................................	21	6	0.17	0.00	0.00	0.17	0.00
.........................................................TTTGTT-----TxAGTTGTGTTTTGC..........................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00

droGri2

CGTATTTGT----TG-------ATCGCATTCCGCTTAAGGTTGGGTT-------------------TCTTTGTTGTGTTTTGGTCTTCCAAGAGCACGGTATGAAGTTCCTATGAGTATTTAAATTTAACGTAGGAACTCTATACCTCGCTGATGGCAAAAACCAGGTAGC---------ATATTTTTG

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image