Possible Orthologs for dme-mir-2494

droSim1 - 17 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3R:9022585-9022731 -

97.3

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCAACCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
......................................................................................TCCCAGTAATGTCCACTTACAAG......................................	23	1	2.00	2.00	0.00	0.00	0.00
.....................................GTAAGTGCACCAGATTGGGAAT........................................................................................	22	1	2.00	1.00	0.00	1.00	0.00
.....................................GTAAGTGCACCAGATTGGGAC.........................................................................................	21	1	2.00	1.00	0.00	1.00	0.00
.....................................GTAAGTGCACCAGATTGGGAA.........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................GTAAGTGCACCAGATTGGG...........................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................................GTGAACAACCTAGTCGGA..	18	1	1.00	0.00	0.00	1.00	0.00
.....................................GTAAGTGCACCAGATTGGGAAA........................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.......................................AAGTGCAACTGATTGGGA..........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGTGCAACTGATTGGGAA.........................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
......................................................................................TCCCAGGAATGTCCACTTACAAG......................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................AAAGCTGCAACTTAAATG..............................................................	18	1	1.00	1.00	0.00	0.00	0.00
......................................................................................TCCCAGTAATGTCCACTTACCAG......................................	23	1	1.00	1.00	0.00	0.00	0.00

chr3R:13169876-13170022 +

61.65

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAA-----CTTAAATATTCC-CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGATTTGCCGCTTACCATTTTTCGTCCGGGTGTTAGTAAGTATATGTCGATGG------AGTTGAAAATCCTCGAATAAACCGACATCTTCCACAGTAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGATCGACAACCTGTACGGACC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................................................................................................................TGCCCGTCTGGATCGTCA.............	18	1	9.00	0.00	9.00	0.00	0.00
..........................................................................................................................TGCCCGTCTGGATCGTCAA............	19	1	2.00	0.00	2.00	0.00	0.00
............................................................................................................................CCCGGCTxGTTCGACAACC..........	18	1	1.00	0.00	1.00	0.00	0.00

chr3R:9025222-9025378 -

55.19

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTT----------AAATATT-------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGGCTTGCCACTTTGCATCTTTCGACCGGCAGTCAGTAAGTGATCATTCTT-------ACGTACCCAGTCTGCATCTTGTTTTGGCTAAGATGTTTCCCTCACCCAGTTATTGCGGCCCACAAGGAACCCATCTCCGGCTGGATAGACAACATGTACGGACC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..............................................................................................................................GAATCCATCACCGGCTGG....................	18	1	2.00	0.00	0.00	1.00	1.00
.............................................................................................................................GGAATCCAGCTCCGGCTG.....................	18	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................GAACACATCTTCGGCTGG....................	18	1	1.00	0.00	0.00	0.00	1.00

chr3R:9019715-9019865 -

54.87

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTG--------CAACTTAAATA-----TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGATCTTCCCCTGAGTGTCTTCCGACCATCAGTCAGTGAGTATTCAATGTGGT---------TCAAAGGGAAAAGAATCCCTGTATACATACTTTCATCACAGTAATTGCGACCCATGAGGAGCCTGTTTCCGGTTGGATCGATAATCTCTACGGACC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..............................................................................................................................................CGATATTCTCTCCGGACC	18	1	1.00	0.00	0.00	0.00	1.00

chr3R:19594658-19594819 -

42.54

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAA---------------AAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C AATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGGTGGGTACACCATAGTGTCTACTCCGCTTTTGTGCCTCCTGGCTAATTGCT-TTATTTAATCCATTGCAGTGACGGCCGCTATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................................................................................GTATxGAGGGCGTCAATGGAC..	20	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................CCCGGCTCGATCGAGGGT............	18	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................GTATxGAGGGCGTCAATGGA...	19	1	1.00	0.00	0.00	0.00	1.00

chr2R:11220457-11220615 -

42.52

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATA-------------ACCTTCAAAAGCTGCAACTTAAATATTCCCAG-TAATGTCCACTTACAAGGA-----------GCCCCTGGTTGGATGGGTGGACAACCT--A-TTCGGACC TCCGGACTGCCAGCAGCCATAGTTAGGCCATCGATTGGTGAGA-TGCC--ATTGGGATTCCAAGCGGCAGGAAAATG------------TCTTAATCGATAACATTTAATTTCTAGT-TTATGGAACCCTGGAGAACCCGATGAAGGGCTGGGTGGGTAATGCAAACTCTGGTCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................TTGTGAGGCCATCGATTG..........................................................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00

chr2L:8297431-8297610 +

41.17

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCT--------------------------------------------------GCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGGACCTGCCTATCTGCGTCTTTCGTCCTGCGATAAGTAAGTGATTTAGTTGGC-----------------TCCGACAAATAGAAAGAAGAAAGTTTGAGGTCAGGTCATTAGTTAACATTATCATCTTTGTGCCTTGCAGTTTTGGCAAATTTCAAGGAGCCGATGTCTGGATGGATTGACAACCTTCACGGAAT

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3R:13166849-13167035 +

38.56

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT-------------------GCACCAGA---------------------------------------TTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGGGTTTGCCCGTAGGCATCTTTCGACCAGCGATCAGTAAGTAATTGTTGCGGTGATAAGTGCTTGGGAAGAAGGATATTATCTACATATCACTATAAGATTAATTTTTTTGAAACAATCTTCAA------------------TTGCAGTTTTATCCACCTTCAAGGAACCAGTGCAAGGATGGGTTGATGGCCTGCAAGGACT

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3L:5014435-5014504 -

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC -----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................................................TATTTATTCGCGGGAATG..................................................	18	1	1.00	0.00	0.00	0.00	1.00

chr2R:19272821-19272899 -

30.34

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC------ CATCTCCCG--------------------------------------------------------------------------CACGCCCAGTGTCGCCGTCGGCGTACGAGCCTGTCCCGGGATGGGTGGACAACCTTAACGGACCCACCGG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.........................................................................................................GTACGAGCCTGTCCCGGGATGGG.........................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................CGCCGTCGGCGTACGAGCCTGTCCCGGGA.............................	29	1	1.00	0.00	1.00	0.00	0.00
.......CG--------------------------------------------------------------------------CACGCCCAGTGTCGCCGTCGGCGTA.............................................	27	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................................GGACAACCTTAACGGACC......	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................CGCCGTCGGCGTACGAGCCTGTCCCGG...............................	27	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................AGTGTCGCCGTCGGCGTACGAGCCT......................................	25	1	1.00	0.00	1.00	0.00	0.00
........................................................................................CCAGTGTCACCGTCGGCGTACGAGC........................................	25	1	1.00	0.00	1.00	0.00	0.00

chr3R:24505378-24505440 -

28.97

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
------------------------------------------------------------------------------------ATTTACAGTGATCACCACTTACCGCGAACCGGTCACTGGCTGGATCGACAACATGTACGGTCC

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chrX:4539798-4539890 +

26.87

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- GACAGGCTGCCCATCTTCATCTTCCGGCCCTCGAT-------------------------------------------------------AGTGGTCTCCACCATTGAGGAACCCATGCCCGGCTGGGCGGACAACTTCAATGGACCC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................................................................................ATTGAGGAACCxxTGCCCGGC........................	19	1	1.00	0.00	0.00	1.00	0.00
..............................................................................................................................GTCGGACAACTTCAATGGC...	19	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................................GTACAACTTCATTGGACC.	18	1	1.00	0.00	0.00	1.00	0.00

chr2R:4418336-4418565 -

23.64

GGCAACC-------------TGCCACTGTCCATCTTCCG----ACCGGCGATCAGTAAGTGCACCAGATT-GGGAAT------------------------------------------------------AACCTTCAAAAGCTGCAACTT----------AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- CGCACAAGGTGATGCAGGCATGCGAGTGGCTTACAGACGACGAGGTGGCCACCATAGAGCGCAAGGTACTCGGGGATATTCCAAACACGTATGCCTACACCAAGTCACTAGCTGAGGCCCTGGTGGTGGAGAAGTTTGAGGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCTGGAAGGAGCCCATTCCTGGCTGGACAGACAACATCAACGGACCC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................................................................................................GGAGAAGTCTGAGAAGCT.....................................................................................	18	1	2.00	0.00	0.00	0.00	2.00
..............................................................................................................................TGGAGAAGTCTGAGAAGC......................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................................................................................................AGCCCATTCCGGGCTGGACT..................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................................GGAGAAGTTGGAAGAGCT.....................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

chr3R:24505764-24505810 -

21.38

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATTTGCCAGTTACCATCTTCAGACCCGGCATTGGTAAGATCAC----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2R:19274334-19274380 -

18.62

GGCAA---CCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC TACGAGTCCATGCCCGTCATCATCGCCCGTCCCAGCATCGGTAAGTG-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......CCATGCCCGTCATCATCGCC...........................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00

chr3L:5015650-5015692 -

17.93

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TTCCACATGCCGGCGGGTATTTTTCGACCGCCCATAGGTGAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2R:4418393-4418427 -

14.75

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGGAGCTTCCCGCCGTA-ATCCTGCGCCCCTCGATC---------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1 - 17 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_12:1702814-1702963 -

89.58

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATT---GGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCATCCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGCACCATAGTAAATGGAATAACCTTCAAAATCTGCAACTTAAATATTCCCAGTAATGTCCGCTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................................................................................................AAGGAGCCCTTCGTTGGA.......................	18	1	2.00	0.00	2.00	0.00
.....................................................................................................................CCTGGCTGGxTGGGTGGAC..............	18	1	1.00	1.00	0.00	0.00

super_450:6202-6348 -

59.96

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGACTTGCCGCTTACCATTTTTCGTCCGGGTGTTAGTAAGTATATGTCGTTGGAATTGAAAATCATCGAATAAACCGACATCTTGCACAGTAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGATCGACAACCTGTACGGACC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................................................................................................TGCCCGTCTGGATCGTCA.............	18	2	1.00	0.00	0.00	1.00
.....................................GTAAGTATATGTCGTTGGA...........................................................................................	19	2	0.50	0.50	0.00	0.00
..........................................................................................................................GCTGGATCGACAACCTGTACG....	21	3	0.33	0.33	0.00	0.00

super_2105:1392-1538 +

59.96

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGACTTGCCGCTTACCATTTTTCGTCCGGGTGTTAGTAAGTATATGTCGTTGGAATTGAAAATCATCGAATAAACCGACATCTTGCACAGTAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGATCGACAACCTGTACGGACC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................................................................................................TGCCCGTCTGGATCGTCA.............	18	2	1.00	0.00	0.00	1.00
.....................................GTAAGTATATGTCGTTGGA...........................................................................................	19	2	0.50	0.50	0.00	0.00
..........................................................................................................................GCTGGATCGACAACCTGTACG....	21	3	0.33	0.33	0.00	0.00

super_12:1706604-1706760 -

55.18

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACC-TTCAAAAGCTGC----------AACTTAAATATT-------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGGCTTGCCACTTTGCATCTTTCGACCGGCAGTCAGTAAGTGATCCTTCTTACG--TAACCCGTC------TACGTCTTGTCTTGGCTAAGATGTTTCCCTTACCCAGTTATTGCGGCCCACAAGGAACCCATTTCCGGCTGGATAGACAACATGTACGGACC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................................................................................................ATTGCGGCCCTCCAGGAA...................................	18	1	1.00	0.00	1.00	0.00

super_12:1700021-1700171 -

54.17

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCAC---------CAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATA-----TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGATCTTCCCCTGAGTGTCTTCCGACCATCAGTCAGTGAGTATTCAATGTGGTTCAAAGGGAAAGGAATCCTGATAAAC----------ATACTTTCATCACAGTAATTGCGACCCATGAGGAGCCTGTTTCCGGCTGGATCGATAATCTCTACGGACC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................................................AATGAATCCTGATAAAA----------A.....................................................................	18	1	1.00	0.00	1.00	0.00

super_0:13723455-13723612 +

44.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCA------CCAGATTGGGAATAA------CC----------------------TTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGGTTTGCCCGTAGGCATCTTTCGACCGGCGATCAGTAAGTAATTGTTTCGGTGATAGAGAATGGAAGAAGATTTTTCTTTACATCCTAACATTATTTAACATCTGAA-----------TTCAGT--TTTCCACT--CAAGACAGTGCA----AGATGGGTGATGCTGC----AAGACT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................................................................GTCCG----AGATGGGTGATGC.............	18	1	1.00	0.00	0.00	1.00

super_0:20111994-20112155 -

43.12

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAG-CTGC-------------AACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C AATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGGTGGGTACACCATAGTGTCTACTCTGTTTTTGTGCCTCCTGGCTAATTGCTTTATTAAATCCATTGCAGTGACCGCCGCCATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................................................................................................................CCCGGCTCGATCGAGGGT............	18	1	6.00	0.00	6.00	0.00
.............................................................................................................................................ATCGAGGGCGTCAATGGACC.	20	1	1.00	0.00	0.00	1.00
........................................................................................................................................GCTGTATxGAGGGCGTCAATG.....	20	1	1.00	0.00	1.00	0.00
........................................................................................................................................GCTGTATxGAGGGCGTCAATGG....	21	1	1.00	0.00	1.00	0.00
...............................................................................................................................................TGAGGGCGTCAATGGACT.	18	1	1.00	0.00	1.00	0.00
..........................................................................................................................................TGTATxGAGGGCGTCAATGGA...	20	1	1.00	1.00	0.00	0.00
..........................................................................................................................................TGTATxGAGGGCGTCAATG.....	18	1	1.00	0.00	1.00	0.00
...........................................................................................................................................GTATxGAGGGCGTCAATGGA...	19	1	1.00	0.00	1.00	0.00

super_450:9170-9351 -

42.46

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG-------------CACCAGATTGGGAATAACCTT-------------------------------CAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGGTTTGCCCGTAGGCATCTTTCGACCGGCGATCAGTAAGTAATTGTTTCGGTGATAAGAGATTGGGAAGAAGGATATTATCTATACATCACTATAACATTATTTTAAACAATCTGAAA---------TTTCAGTTTTATCCACCTTCAAGGAACCAGTGCAAGGATGGGTTGATGGCCTGCAAGGACT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................................................................................................................................................CAGGGCxAGGATGGGTTGA...............	18	1	1.00	0.00	0.00	1.00
........................................................ATAAGAGATGGGGAAGAT.....................................................................................................................	18	1	1.00	0.00	1.00	0.00

super_1:9981889-9982047 -

41.55

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAA--------CTTAAAT-----------ATTCCCAG-TAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTA---TTCGGACC
TCCGGACTGCCAGCAGCCATAGTTAGGCCATCGATTGGTGAGA-TGCC--ATTGGGATT-----CC--AAGCGGCAGGAAAATGTCTTAATCAATAACATTTCATTTCTAGTTTATGGAACCCT-GGAGAACCCGATGAAGGGCTGGGTGGGTAATGCAAACTCTGGTCA

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_3:4007343-4007521 +

39.82

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGA----------------------------------------ATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC CAGGACCTGCCTATCTGCGTCTTTCGTCCTGCGATAAGCAAGTAATTTAGTTGGCTCAGACAAATAGAAAGAAGAAAGTTTGAGGTCAAGTCATTAGTTAACATTA-------TCATCTTTGTGCCTTGCAGTTTTGGCAAAT-TCAACGAGCCGATGTCTGGATGGATTGACAACCTTCACGCGAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.................................................................................................................................................................GAATGGATTGACAACCCT........	18	1	1.00	0.00	1.00	0.00
....................................AGCAAGTAATTTAGTTTA.....................................................................................................................................	18	1	1.00	0.00	1.00	0.00

super_10:1880114-1880216 -

34.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAA--GTGCACCAGA------TTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAG--CCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGAATGACTACCGCC---------ATCGGCTGCCAGTAATAGTGTATCGTCCTTCCATAG---GTAA--TCAAAGGACTGCAAATCCATTAGTCCCTG--------ATTTACAAACAAAGC--------------------------------CT

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_2:5435591-5435660 -

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_4:3682145-3682207 -

28.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC ------------------------------------------------------------------------------------ATTTACAGTGATCACCACTTACCGCGAACCGGTCACCGGCTGGATCGACAACATGTACGGTCC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................................................................GCTGGATCGACAACCTGTACG....	21	3	0.33	0.33	0.00	0.00
...........................................................................................................GCAAACCGGTCxCCGGCTG.....................	18	1	1.00	0.00	1.00	0.00

super_4:958323-958415 -

26.87

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- GACAGGCTGCCCATCTTCATCTTCCGGCCCTCGAT-------------------------------------------------------AGTGGTCTCCACCATTGAGGAACCCATGCCCGGCTGGGCGGACAACTTCAATGGACCC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................................................................................CTCCAGCATTGAGGAACT..................................	18	1	1.00	0.00	1.00	0.00

super_1:3398319-3398410 -

25.29

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
AGGAGCTTCCCGCCGTA-ATCCTGCGCCCCTCGATC-------------------------------------------------------GTCATACCCATCTGGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCC

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_4:3682542-3682588 -

21.38

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC CAGAATTTGCCAGTTACCATCTTCAGACCCGGCATTGGTAAGATCAC----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........GCCAGTTxCCATCTTCAGAGC......................................................................................................................	20	1	1.00	1.00	0.00	0.00

super_0:13732969-13733014 +

20.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGGACTTGCCGCTTACCATTTTTCGTCCGGGTGTTAGTAAGTATA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

droYak2 - 18 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3R:11948210-11948356 -

93.27

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGACCTGCCACTGTGCATCTTCCGCCCGGCGATCAGTAAGTGCACCAGATTGGGATTAACCTTCAAAAGCTGCAGCTTAACTATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGATGGCTGGGTGGACAACCTATTCGGACC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................GTAAGTGCACCAGATTGGGATT........................................................................................	22	1	18.00	0.00	0.00	18.00	0.00	0.00
.....................................GTAAGTGCACCAGATTGGGAT.........................................................................................	21	1	4.00	0.00	0.00	4.00	0.00	0.00
.....................................GTAAGTGCACCAGATTGGGA..........................................................................................	20	1	2.00	0.00	0.00	2.00	0.00	0.00
.....................................................................................................CTTACAAGGAGCCCCTGGATGGCTGGGT..................	28	1	2.00	0.00	0.00	2.00	0.00	0.00
......................................................................................TCCCAGTAATGTCCACTTACA........................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................CTGAATGGCTTGGTGGAC..............	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................AAGGAGCCAGTGGATGGCTGGG...................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................TTCCCAGTAATGTCCACTTACA........................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................................AGGATGGCTGGGTGGTC..............	17	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................GTAACTGCACCAGATTGGGATT........................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................................TCCCAGTAATGTCCACTTACAAG......................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................................TCCCAGTAATGTCCACTTACAAGT.....................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00

chr2L:11165995-11166139 +

61.74

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCA--GATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGGACCTGCCTATCTGCATTTTTCGTCCTGCGATAAGTAAGTGATCTTGCGATTCAGGATATTTTTATAA----GCCACTTTATCCCTTGCAGTTTTGGCAAATTTCAAGGAGCCTATGTCCGGATGGATTGACAACCTTCACGGAAT

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3R:12543675-12543821 -

57.76

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGG-----GAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGGGATTTGCCGGTTAGCATTTTTCGTCCAGGCGTTAGTAAGTATATGTCGTTGGAATTGCAATTCCTCGTAAAACCCGTAGTCT-----TGCACAGTAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGATCGACAACCTTTACGGACC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3R:11944842-11944994 -

56.99

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGC------AACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGATCTTCCAGTGAGTGTCTTCCGACCATCAGTCAGTGAGTATTGAAAGTTGTGAAAAGGCAAGGAGTACTGATATACTTACTTTCGCAATCCCAGTCATTGCCACCCACGAGGAGCCGGTTACCGGTTGGATAGACAACCTGTACGGACC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................................TTGTxAAAAGGCAAGGAGTT..................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00

chr3R:11950701-11950856 -

56.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAA------------GCTGCAACTTAAA-----TATT-------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GTTGGCTTGCCACTGTGCATCTTCCGACCGGCAGTAAGTAAGTGATC---------------TTTCAACATACCCAGTATCCGTCGCATCTTAGTTGAGATGTTTTCCCAACCCAGTTATCGCGGCACACAAGGAACCCATCTCCGGGTGGATTGACAACATGTACGGACC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3R:26732063-26732217 +

47.67

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG----CACCAGATTGGGAATAACCTTC--AAAAGCTGCAAC--TTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- AATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGGTACATATATACTTCATTTTTGGTTTGCC-TCCTGGCTAATTGCTTTATTAAATCCATTGCAGTGACGGCCGCCATTCACGAGCCACTGCCCGGCTGGATCGAGGGCGTCAACGGACCC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................................................................................GAGGGCGTCAATGGACTC	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................................................................................................CACTGCGCGGCGGGAT...................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................................................................GCCCGACTGGATGGAGGGCGTC.........	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................................................ACTGCCCGGCTGGATCGAGGAC............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................................................CCACTGCCCGACTGGCTC..................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

chr2R:16498320-16498472 +

47.39

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAAT-------ATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAA--CCTATTCGGACC TCGGGACTGCCAGCAGCCATAGTTAGGCCATCAATTGGTAAG---ATTTTATTAGGAAAAATCCAGGAAAATGTTTTATTAATTGCTTTTCATTTCCAGTTTATGGAACCTTGGAGCACCCGATGAAGGGCTGGGTGGGCAATGCCAACTCTGGTC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................................AAGGGCTGGGTGGTCAAGGCC..........	21	1	1.00	0.00	0.00	0.00	1.00	0.00

chr2R:16504888-16505044 +

46.18

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT--GCACCAGATTGGGAATAACCTTC-AAAAGC---TGCAACT--------TAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATT-------CGGACC AGTAAGTTCCCCTGCGGCATCGTCCGTCCCAGTATGAGTGAGTATTGAGCAGACTATTAGCTATTTCCCAGAAACCAACGCATCTTTTAAACGTAA----TTAAAGTCACTGCCGCTTGGAAGGAGCCTCTTCCTGGATGGAC-------CATTTCGAAGAATGGTCC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................TCCCAGTAAGTGTGAGT.............................................................................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................TCTTCCCCAGAAACCAACGC.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................................................................................................ATCACTGCCGCTTGGAAGGAGC.........................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00

chr2R:16472060-16472227 -

45.45

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTG--------------------------------------------------GGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGTAATCTGCCCGTTGCCATCGTGAGGCCATCGATTGGTGAGTAGAGCAAATGTTATACATATCATCGCTTATGAATAGATCCAATAATATGATATTTGTAATTGTAA-----------------------------TGCAGTGACTGCCAGTCTGAATGAGCCCTTTGCCGGTTGGGTGGACAACTTCAATGGGCC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...........CGTTGCCATCGTTGGGCC........................................................................................................................................................................	18	1	10.00	0.00	0.00	0.00	0.00	10.00
............................................................................................................................................TGTGACTGCCAGTCTGAATGAGCCCTT..............................	27	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................................................................................AATGAGCCCTTTGCCGGTTGGGT..................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...........CGTTGCCATCGTTGGGC.........................................................................................................................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00

chr3L:6061542-6061611 -

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC -----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..............................................................................TATTTTATTCGCAGTAAT...................................................	18	1	2.00	0.00	0.00	1.00	0.00	1.00
..............................................................................ATxTTTATTCGCAGTAATT..................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

chr3R:12546761-12546971 -

29.31

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCA-------------------------------------------------------------------------------GATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGGCTTGCCAGTCGGCATTTTTCGACCAGCGATCAGTAAGTAGATGTTTCAGTGCAGTTATAAGTACCGACTACGTATAAGTATATTAATATGATATAAGATTAATTCAAATTATATAGAGGCAATGTCTAAGTCAAACCATCTGAAATTGCAGTT---------------TTATCCACCTTCAAGGAACCCGTGCGAGGCTGGATTGATGGCCTGCAAGGGCT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........GACAGTAGGCATTTTTCGA.......................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................................................................................................................GAGxGGCTGGATGGATGG............	17	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................................................................................AATTGCAGTT---------------TTxTCGACCT...........................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

chr3R:21679318-21679379 +

28.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC -------------------------------------------------------------------------------------TTCACAGTGATCACCACGTACCGCGAACCGATCACTGGCTGGATCGACAACATGTACGGTCC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...........................................................................................................................CTGGAACGACAACATGGA......	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................................................................................................CCGCGAACCGATCACTGGC.......................	19	1	1.00	0.00	0.00	0.00	0.00	1.00

chrX:14660368-14660460 +

28.17

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GACAGACTGCCCATCTTCATCTTCCGGCCATCGAT-------------------------------------------------------AGTGGTGTCCACAATTGAGGAGCCCATGCCCGGCTGGGCGGACAACTTCAATGGGCCC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2L:18412949-18413040 -

25.29

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTA-TTCGGACC AGGAGCTTCCCGCCGTC-ATCCTGCGCCCCTCGATC-------------------------------------------------------GTCATCCCCATCTGGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGGCCC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................................................................GCTGGAxGGACAACATCAAG......	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................................................GAAGGAGCCCAAACCCGGC........................	19	1	1.00	0.00	0.00	0.00	1.00	0.00

chr2R:20782322-20782360 -

21.38

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
G-------------------------------------------------------------------------------------------------------------AGCCCTTGCCCGGATGGGTGGACAACCTGAACGGACCC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3R:21678921-21678965 +

20.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATTTGCCAGTTACCATCTTCAGGCCCGGCATTGGTAAGTTC------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2R:20785370-20785416 -

18.62

GGCAA---CCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TACGAGTCCATGCCCGTCATCATCGCCCGTCCCAGCATCGGTAAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3L:6062875-6062917 -

17.93

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2 - 16 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4770:9192977-9193123 -

91.26

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCAACCTGCCCCTGTGCATCTTCCGCCCGGCGATCAGTAAGTGCAACAGATTGGGAGTAACCGTCAAAAGCTACAACTTCAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGCTGGATAGACAACCTATTCGGACC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................GTAAGTGCAACAGATTGGGAGT........................................................................................	22	1	1.00	0.00	0.00	0.00	1.00

scaffold_4770:13398924-13399070 +

60.39

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGATTTGCCGCTTAGCATTTTTCGACCAGGCGTTAGTAAGTACTTTTCGTTGGGACTTAAATTCCTCGTCTAATCCGTAGTCTTCCACAGTAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGATCGACAACCTATACGGACC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................TTTTTCGACCAGGCGTTA..............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................ATTTTTCGAGCAGGCGTT...............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4770:9195467-9195623 -

57.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCA-----------------------------CCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATT-------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGGCTTGCCACTCTGCATCTTTCGACCGGCAGTCAGTAAGTGATCTTTCTTACACACCCAGTCTCCAACTAATCCGCGTTGAGA--------------------------TATTTTCCCAACCCAGTTATCGCGGCGCACAAGGAACCCATTTCCGGCTGGATTGACAACATGTACGGACC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4770:9187541-9187701 -

54.26

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCA-----------------------ACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGACCTTCCCCTGAGTGTCTTCCGACCATCAATCAGTGAGTATTGAAAGTGGTGAAAAGGCT---------AGGTGTCCTCATATACATTTATACATGCTTTCACAATCCAAGTAATCGCCACCTATGAAGAGCCTGTTTCCGGTTGGATGGACAATCTCTACGGACC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................................................................CCCCTATGAAAAGCCTGTT.............................	19	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................ATACATCCTTTCACAATCCA.........................................................	20	1	1.00	1.00	0.00	0.00	0.00

scaffold_4784:8184057-8184194 -

51.79

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAA-----GTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAA------CTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGCCACCAGCCACCAACTCCTTTTCCGTCTGCGATTCTCTGGCCGAGCGAAC--------------------AAAGCAGCCATTAATTCTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4845:13350200-13350357 -

49.37

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGG----------------------AATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGTAATCTGCCCGTTGCCATTGTGAGGCCATCGATTGGTGAGTGGTGCAAATATTATGCTTATGCAAAGATCCAATAATATGATGTTTAAAATCGTTA-----------CGCAGTGACTGCCAGTCTGAATGAGCCGTTTGCCGGTTGGGTGGACAACTTCAATGGGCC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..............................TCTATTGGTGxGTGGTGCA........................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4845:13376004-13376157 +

44.98

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT--------TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTA---TTCGGACC TCCGGACTGCCAGCAGCCATAGTTAGGCCATCGATTGGTGAGATT---CCATTGGGAAAGCGACTGGAAAATGTCCTTTTAATTGCTTTTGGTTTCTAGTTTATGGA-ACCTTGGAGCACCCGATGAAGGGTTGGGTGGGCAATGCAAACTCTGGTCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................................GGTTTCAAGTTTATGGG-A.................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4820:8287291-8287453 +

44.75

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAAC-----------------TTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C AATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGGTGGGTACCACAGAGT--GTCTACTTTTTGTGTTGTGCCTCCTGGCTAATTGCTTTATTAAATCCATCGCAGTGACGGCCGCCATTCACGAGCCATTGCCCGGCTGGATTGAGGGCGTCAATGGACCC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................................................................................................................TGTAxTGAGGGCGTCAATGGAC..	21	1	2.00	2.00	0.00	0.00	0.00
...............................................................................................................................................GTATGAGGGCGTCAATGGA...	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................................................................GCTGTAxTGAGGGCGTCAATG.....	20	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................................................................TGTAxTGAGGGCGTCAATGG....	19	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................................TATGAGGGCGTCAATGGAC..	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_4820:3216865-3216972 +

43.45

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAA-------ATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGGAA----------------------------------------------TAACCGATTAAAATATAAAGTTAAAAATAAATGTTGGTTTATTCACAGTGATCACCACTTACCGCGAACCGATCACCGGCTGGATCGACAACATGTACGGTCC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................................................................................................CTGGAACGACAACATGGA......	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:9113862-9114052 +

38.16

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC--------------------------------------------------------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGGACCTACCTATCTGCATTTTTCGTCCGGCGATAAGTAAGTGATTCAA--TAGATAGAATCTTTAAAAC----------AATATTCAGACTATCTATGTCTATCTCTGATAGTTTTGGTTAGCATTAACAACGTTGTCCCTTGCAGTTTTGGCAAATTTCAAGGAACCGATGTCAGGATGGATTGACAACCTTCACGGAAT

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4770:13395871-13396081 +

32.24

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT----GCACCAGA-----------------------------------------------------------------------------------------TTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGGCCTGCCGGTCGGCATTTTTCGACCAGCGATCAGTAAGTATTTGCTCCAGTCATAGGAACAAATCAATCACACATAGATCACTGTGATATAAAGTTTAATCAACAAGTTATATAGAAGCTACTGTTCTAAGACAAACAATCTGGAA-----------------------------TTGCAGTTTTATCCACCTTCAAGGAACCTGTGCGAGGATGGGTTGATGGCCTGCAAGGGAT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................................................................................AGTTATATAGAAGCTAGC.................................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00
............................................................................................ATAAAGTTTAATCAATCAGTT...............................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................................................AA-----------------------------TTGCAGTTTTxTCGACCT...........................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_4845:22191142-22191205 -

29.66

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTC---CACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- CCCTG---------------------------------------------------------------------------------------CAGTGTCTCCGGCTGCCTACGAGCCGTTGCCCGGATGGGTGGACAACCTGAACGGACCC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..CTT---------------------------------------------------------------------------------------CAGTGTCTCCGGCTAC...........................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_4690:3147785-3147877 +

27.3

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- GATAGGCTGCCCATCTTCATCTTCCGGCCATCGAT-------------------------------------------------------AGTGGTATCCACCATTGAGGAGCCCATGCCCGGATGGGCGGACAACTTCAATGGACCC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................CATCGAT-------------------------------------------------------AGTGGxAGCCACC.............................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:8581118-8581209 +

24.01

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAAC-CTATTCGGACC
ATGAGCTTCCCGCTGT-GATTCTGCGCCCATCAATC-------------------------------------------------------GTCATCCCCATATGGAAGGAGCCTATTCCCGGCTGGACGGACAACATTAATGGGCCC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4820:3216557-3216602 +

20.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATTTGCCCGTTACCATCTTCAGACCCGGCATTGGTAAGATCA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4845:22194186-22194232 -

18.62

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droFic1 - 21 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000453796:140197-140344 -

80.76

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAAC-CTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCGACCTGCCGCTCTGCATCTTCCGACCGGCGATCAGTAAGTGCACCAAACTTATATTGTCTCTTCAAAGGCTGCCACTTGAATCTTTACAGTAATGTCCACCTACAAGGAACCCCTGCATGGCTGGGTGGACAACCTGTTTGGACC

Size

Hit Count

Total Norm

scf7180000453812:862801-862947 +

61.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGC---TGCAACTTAAATATTC--CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGGGATCTGCCGATCTGTATCTTTCGTCCTGGCGTTAGTAGGTGAATTTTGTTGAAGATTA-----ATGAGCTCTTGTTACCTATACTTTCCCCCAGTAATAGCCAGCTATAAGGAGCCCATGTCTGGTTGGATCGACAACTTGTACGGACC

Size

Hit Count

Total Norm

scf7180000453796:143022-143169 -

58.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC-CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GCTGATTTACCCATTTGTATCTTTCGACCAGCAGTCAGTAAGTTCATTATATTTATTATATATATTTAAGCTAATGATTTCCCTACACCTTAGTTATCGCTGCCCACAAGGAGCCCATCGTCGGTTGGATTGACAACTTGTACGGACC

Size

Hit Count

Total Norm

scf7180000454073:3526611-3526739 +

50.34

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
------------------ATGTTTTGGCCATGTGACAGTAATTAAAATAAACTGGAAGAGTAGTAAACTAAGTTTAACGAATACATTCACAGTGATTACCACATACCGCGAACCGGTGACTGGCTGGATTGACAACATGTACGGTCC

Size

Hit Count

Total Norm

scf7180000454117:179387-179502 +

46.78

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCA-------AAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGGACCTGCCGATTTGCATTTTCCGACCTGCCATAAGTAAGTGATTTAGAATTAGAATTAGTTTCGTGTGTGCAAATTTATACCTTAAGTGTATTTG--AATGTCTGTTTATAATGA------------------------------------

Size

Hit Count

Total Norm

scf7180000453851:679654-679808 -

45.87

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAG---ATTGGGAATAACCTTCAAAAGC--TGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTA---TTCGGACC
TCCGGACTGCCAGCAGCCATAGTCAGGCCATCGATTGGTAAGTTAACTACTAAAACAATTATAGATTTAGTAACCAATATTGATTATCTACTCGCAGTTTATGGCACCCTGGAAAACCCCATGAAGGGTTGGGTGGGTAATGCAAACTCTGGTCA

Size

Hit Count

Total Norm

scf7180000453800:1943576-1943736 -

42.54

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC-------------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C
AATAAGCTGCCCATAATCATCACAAGGCCTTCGATTGGTGGGTATTGTGTTGCACTGTCTACTTTTTGTGCCTCCTGCTTAATTGCTTTATTAAATCCGTTGCAGTGACGGCGGCCATTCACGAACCTTTGCCCGGTTGGATTGAGGGCGTCAATGGACCC

Size

Hit Count

Total Norm

scf7180000454072:3218891-3219006 -

35.61

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----CCTGCCGCTGGTGGTGTACCGCCCCTCCATAGGTGAGCCTACGATCC--G-----------CCCAATTGCAGTTTCC--ATTCCCGATCCCGTTTCCATCCAGTTCTCTTC--------GCGGTGGACGACCCCTC----GC

Size

Hit Count

Total Norm

scf7180000454073:3526147-3526237 +

34.42

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTG-------------GGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAACCTGCCAGTCACCATCTTCAGACCGGGCATTGGTAAA--CATTATATTACTGTTCAATTACGCAAAAAGCCCTCAAGAAGTATAGTTT-------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000454107:96680-96749 -

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000453858:678313-678376 +

30.34

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
CCCT------------------------------------------------------------------------------------CTAGTCTCCCCGGCTGCCTACGAGCCGCTGCCCGGATGGGTGGACAACCTGAACGGACCC

Size

Hit Count

Total Norm

scf7180000453796:137367-137427 -

29.66

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TT--------------------------------------------------------------------------------------CTAGTAATTGCCACCCACAAAGAACCGGTTGTCGGTTGGATTGACAATCTGTACGGACC

Size

Hit Count

Total Norm

scf7180000454117:176552-176609 +

28.97

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------------------CAGTTATGGCCAACTTCAAGGAGCCGATGTCTGGATGGATTGACAACCCACACGGAGT

Size

Hit Count

Total Norm

scf7180000454117:174496-174553 +

28.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------------------CAGTTATGGCCAACTTTAAGGAGCCGATGTCTGGATGGATTGACAACCCACACGGAGT

Size

Hit Count

Total Norm

scf7180000454117:179680-179737 +

27.59

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------------------CAGTTTTGGCGAACTTCAAGGAGCCGTTGTCTGGATGGATTGACAACCTACATGGAGT

Size

Hit Count

Total Norm

scf7180000453796:137675-137735 -

25.52

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGGGACCTTCCTATAAGCATCTTTCGACCAGCAGTTAGTAAGTATAATAAGTATAATATAA--------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000453858:953970-954062 +

25.14

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GACGAGCTGCCGGCGGTGATCCTGCGGCCCTCGATC-------------------------------------------------------GTGATCCCCATCTGGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGCCCC

Size

Hit Count

Total Norm

scf7180000453812:859821-859884 +

24.83

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------------TACTTGCAGTTTTATCATCCTTCAAGGAACCAGTACCGGGATGGATTGACGGGTTGCAAGGACT

Size

Hit Count

Total Norm

scf7180000453812:859585-859627 +

22.07

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAGACCTGCCAATCGGCGTTTTCCGACCAGCTATTAGTAAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000454107:97914-97960 -

20.69

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TTCCACATGCCGGCGGGTATCTTTCGACCGCCCATAGGTGAGTGGAC----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000453858:675225-675281 +

20.69

GGCAAC---------CTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GACCACTACGAGTCCATGCCCGTCATCATCGCCCGTCCCAGCATCGGTAAGTGACCC---------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droEug1 - 17 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409557:86539-86685 -

87.23

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCAACCTGCCCGTGAGCATCTTTCGACCAGCGATCAGTAAGTCCACCAGATTGGGATTAATCTTCAAAAGTTGCAACTTAAATATTCCCAGTAATGTCCACCTACAAGGAGCCTCTGAATGGGTGGGTGGACAATCTATTTGGACC

Size

Hit Count

Total Norm

scf7180000409615:468913-469058 -

62.07

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAAC-----TTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GAAGATTTGCCAATCTGCATTTTTCGTCCTGGTGTTAGTAGGTGAATCTCTTTTCA-----ATTTTAAGGGCTA-AACTAAAACTATGATTTCCCAGTAATTGCCAGCTATAAGGAGCCCATGTCTGGTTGGATTGACAATCTTTACGGACC

Size

Hit Count

Total Norm

scf7180000409557:89169-89316 -

58.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG-CACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGGCTTACCGCTTTGCATTTTTCGGCCAGCAGTCAGTAAGTATCAAATAATTTTGTATTATTTTTTAAGTAAATGGCTTACTATAACCTAGTCATTGCGGCCCACAAGGAGCCCATCTCTGGCTGGATTGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000409557:81275-81427 -

57.47

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATA-----A-CCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCGACCTACCGCTAAGCATATTTCGACCTGCAATTAGTAAGCTCATTAAATATGTAATGAAACGATCTTCTAATTATTATTTGATTTACTCTTTCAGTAATTGCCACCCATAAAGAACCCGTTTCCGGTTGGATTGACAATCTTTACGGACC

Size

Hit Count

Total Norm

scf7180000409557:83397-83542 -

56.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGA-------TTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCTGCTTACCAGTTTGCATTTTTCGTCCTGGCGTCAGTAAGTTAATATGGTTACTATTTGGGGTTTACAATAATG-----GTATATAA---AACGCAGTTATGGCGGCTTACAAGGAGCCCGTATCCGGATGGATTGACAGCTTTCAGTCACA

Size

Hit Count

Total Norm

scf7180000409554:1014029-1014175 -

53.16

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT-------TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGGATCTCCCTATCTGCGTTTTTCGTCCTGCTATTAGTAAGTGCGTTT---TAATATTATCGTTTA----GTTTAATCTAAATGTTTTTCCTTTAAAGTTTTAGCTAATTTCAAGGAACCGATGTCGGGGTGGATTGACAACCTCCACGGAGT

Size

Hit Count

Total Norm

scf7180000409672:2658084-2658247 -

49.83

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGAT------TGGGAATAACCTTCAAAAGCTGCAACTTAAAT-----------ATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTAATCTGCCCGTTGCCATTGTGAGGCCATCGATTGGTGAGTTTACTAGATAAAAACTTTAAAGAACCATGAAAAATATTATCAAAATAATATCCTTTCTTTTCACAGTGACTGCCAGTCTAAATGAGCCGTTTGCCGGATGGGTGGACAACTTTAATGGGCC

Size

Hit Count

Total Norm

scf7180000409033:123332-123483 +

49.58

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAG----TGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C
GATAAGCTACCCATACTTATCTTCAGGCCATCTATTGGTAAGATTATTTACTATCTTTAATATAAAACTAGTGGTCTATATATGTACTTGTTACAGTGGTCTCTACTATTGAGGAACCTATGCCCGGCTGGGCGGATAACTTTAATGGCCCC

Size

Hit Count

Total Norm

scf7180000409672:2691332-2691488 +

45.9

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACC----AGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATA--------TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGTAAATTCCCCTGCGGCATCGTTCGTCCCAGCATGAGTGAGTGTGAAATAGAGATTTGGA--TATCATCAAAGAAACTAATAAAAATCGTCATCCTTTTATAGTCACCGCTGCTTGGAAGGAACCACTTCCTGGATGGACCATTTCTAAGAACGGTCC

Size

Hit Count

Total Norm

scf7180000409798:625145-625304 +

44.75

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACT-----------------TAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
AATAAGCTGCCCATAATCATCACAAGGCCCTCGATTGGTGGGTATCGGAGT----GCCTACTCTT-TGTGGTTACCTCCTGGTTAATTGCTTTATTAAATCCATTGCAGTGACGGCCGCTATTCACGAACCGTTGCCCGGCTGGATCGAGGGCGTCAATGGACCT

Size

Hit Count

Total Norm

scf7180000409093:16851-16988 +

43.32

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGA------TTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGC----CCCTGGTTGGAT---GGGTGGACAACCTATT--CGGACC
TGAATACCGCCATCGCTTG--------CCGGTAAT-----AGTGTACCGTCCATCCATA------GGTATTCAAAGGTTC----CTAAATGTATC-TTAAACGCAGATTTATAAAGAATAATCTTCTAGTTCTTTTTGCGGTGGACGACCCATCGCCTGGTT

Size

Hit Count

Total Norm

scf7180000409615:471960-472143 -

39.83

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT---------------------------------------------------GCACCAGAT-TGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGGACTTGCCAGTGGGCATTTTCCGACCAGCAATAAGTAAGTATCATTGTAATGAAGAAAGAAAAAGCTTCCATTAAGCTTTTATATATATATGGACTAGTTCTAAGAACTTCTTTCTGGACTTGCA---------------GTTTCCTCCACCTTCAAGGAGCCAGTGCCTGGTTGGATCGATGGCTTGCAAGGACT

Size

Hit Count

Total Norm

scf7180000409787:759260-759351 +

38.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
G-------------------------------------------------------AACAATATTAAACATTCATTCTATATACATTTACAGTGATCACCACTTACCGCGAACCGGTCACTGGTTGGATCGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000409464:1504281-1504327 +

23.45

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
C------------TGCC-----------------------------------------------------------------------------------------TATGAGCCGTTGCCCGGATGGGTGGACAACCTGAACGGACCG

Size

Hit Count

Total Norm

scf7180000409209:388417-388508 +

22.44

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GATGTGCTGCCCGCCGTGATTCTGAGACCCTCGATT-------------------------------------------------------GTTATCCCAATCTGGAAGGAGCCCATTCCCGGCTGGACAGACAACATCAACGGACC

Size

Hit Count

Total Norm

scf7180000409787:758937-758980 +

22.07

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAACCTGCCAGTCACCATCTTCAGACCGGGCATTGGTGAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000409464:1501337-1501380 +

17.93

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GAGTCCATGCCCGTCATCATCGCCCGTCCCAGCATCGGTAAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droBia1 - 19 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000299102:379899-380045 +

82.54

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCAACCTGCCCCTGTGTGTCTACCGGCCGGCGATCAGTAAGTGCATCAGATTGGAGTTAATCTTGAACAGCTGCAACTTAAATATTCCCAGTTATGTCCACCTACAAGGAGCCCGTAAGCGGGTGGGTGGACAATCTGTTTGGACC

Size

Hit Count

Total Norm

scf7180000302155:84442-84585 +

63.38

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGA------ATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTGCCCATCTGCATCTTTCGTCCTGGCGTCAGTAGGTGAATTCGT-TGGGATCTAAAGCAACCTTCTAATCCCGTAT--------TTCCCAGTAATTGCCAGCTACAAGGAGCCCATGGTCGGCTGGATTGACAACACCTACGGACC

Size

Hit Count

Total Norm

scf7180000299102:377314-377465 +

55.23

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCT-------------------------TCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGGCTTACCCCTCTGCATCTTCCGACCGGCAGTCAGTGAGTAATCCTTGCCAAAGATATAATACTAGTTATAGCAGTGGTTTTCCCCTA--------------------ACCCAGTCATTGCGGCCCACAAGGAACCCATCTCCGGCTGGATTGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000299102:382316-382467 +

55.23

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAA-----CTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAGATCTTCCCCTGAGTATCTTTCGACCGGGTGTTAGTAAGTAAATGGCGTGGTACAGGGGCTTGAACTCCTGATAACATTTTTTTTCATTCTCAGTAATCGCCACCCACACCGACCCTGTAAGTGGCTGGATAGACAATCTGTACGGCCC

Size

Hit Count

Total Norm

scf7180000298389:975301-975455 +

51.19

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGG------------GAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GATAGGCTGCCCATCTTTATCTTCAGGCCCTCGATCGGTAATATAATCTGATACCCACACATAACACCAATTACATTTGGGATCTCCAACCTTA----TGACAGTGGTCTCTACGATCGAGGAGCCCGTGCCCGGCTGGGCGGATAACTTCAATGGACC

Size

Hit Count

Total Norm

scf7180000301754:5786380-5786537 -

49.2

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCAC---------------------------TTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GCTG------CGGTGACCATCATCCTG--GGCTCGTGGTATGT-----AGACTGGTGTC----ATCTGGAGTCCCGATCGAACGTCTCCTAGTAAAGCCATCTTCCCTTCGCCCCCTAGTCTCGCCAGCTGCCTACGAGCCGCTGCCCGGATGGGTGGACAACCTGAACGGACCG

Size

Hit Count

Total Norm

scf7180000302136:105781-105939 -

48.15

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATT-----------------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTAT-TCGGACC
AATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGGTGGGTAGCATA------GTGTCCACTTTTTGCGCTGCCTCCTGGTTAATTGCTTTATTAAATCCGTTTCAGTAACGGCCGCCATTCACGAGCCACTGCCCGGCTGGATCGAGGGCGTCAATGGGCCC

Size

Hit Count

Total Norm

scf7180000301506:1866522-1866675 -

46.47

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGAT--TGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGT---TGGATGGGTGGACAA--CCTATTCGGACC
TCCGGACTGCCAGCAGCCATAGTTAGGCCATCGATTGGTGGGTTTCTCAAATAATATTAAAGGTACTCTCAACCTATGTCCCAACTCATCCGTGCAGTTTATGGAACCCTGGAGCACCCGATGAAGGGCTGGGTGGGCAATGCGAACTCTGGCC

Size

Hit Count

Total Norm

scf7180000302292:1129635-1129789 +

45.27

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTT-C---AAAAGCTGCAACTTAAATATTC------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGCAAGTTCCCCTGCGGCATCGTGCGTCCCAGCATGAGTGAGTGCTTG--ATAGGACTTTAACTTACTCAATAAAATAAAACATCAATTTGTCATATTAAAGTCACTGCTGCCTGGAAGGAACCTATTCCTGGATGGACCGTTTCGAAGAACGGACC

Size

Hit Count

Total Norm

scf7180000302075:1924759-1924869 +

42.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATA------ACCT--TCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAAAACCTGCCAGTCACCATCTTCAGACCCGGCATTGGTGAGTCC--CATCTTAGAGTTATCTGTGCACTTACCAAGATATCTCAACTGAAAATCCCTATATATATACATTTA------------------------------------------

Size

Hit Count

Total Norm

scf7180000301760:2076486-2076610 -

40.02

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGG-------AATAACCTTCAAAAGCTGCAACTTAAA----TATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTAT--TCGGACC
-----CCTGCCGCTGATAGTGTACCGGCCATCCATAGGTAA----TCAGGGATGCCCAAAACATATAGCTTTTT---GCAGCGACTTATAAAGCTCACTCCAGTACTGTTTGC------------------------GGTGGACGATCCTTCGCCTGGTT

Size

Hit Count

Total Norm

scf7180000302291:1900295-1900454 -

39.83

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCAC--------------CAGATTGGGAATAACCT-TCAAAAGCTGCAACTTAAATATTCCCAG----------TA--ATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
T-------------CTGCATTTTTCGACCTGCCATTAGTAAGCGAATGTTTGCATATACACACGCCTTAGAGTACTTTTTTATAAGTTAATATCCAAATAAAACTACGATGTTAAAATGATTTGTGTAGTTAGCACGGTCACCTCCTAGGCT--TTTAAAAGCCCATGCCAACC

Size

Hit Count

Total Norm

scf7180000302428:1466606-1466675 +

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000302075:1925147-1925215 +

31.03

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
------------------------------------------------------------------------------TTAACTGTTTACAGTGATCACCACCTACCGCGAACCGGTCACTGGCTGGATCGACAACATGTACGGTCC

Size

Hit Count

Total Norm

scf7180000302155:81626-81688 +

26.21

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
------------------------------------------------------------------------------------ACTTTCAGTTACCTCCACCTTCAAGGAGCCAGTGCGGGGCTGGATCGATGGGCTGCAAGGACT

Size

Hit Count

Total Norm

scf7180000301506:920349-920441 +

24.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GACCAGCTACCCGCCGTGATCCTGCGTCCCTCGATC-------------------------------------------------------GTGATCCCCATCTGGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCC

Size

Hit Count

Total Norm

scf7180000302428:1465305-1465348 +

20.69

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TTCCACCTGCCGGCGGGCATCTTTCGACCGCCCATAGGTGAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302155:81304-81346 +

20.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGGATCTGCCGGTCGGCATTTTCCGACCAGCCATCAGTGAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000301754:5789543-5789589 -

17.93

GGCAA---CCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TACGAGTCCATGCCCGTCATCATCGCCCGTCCCAGCATAGGTAAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droTak1 - 18 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415580:230298-230451 -

80.09

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC----ACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC---CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCAACCTGCCCCTGTCCATCTTCCGGCCGGCGATCAGTAAGTGCTTTACCCCGCATGGGATTAACCTTCAAAAGCTGCAACTTGAATATTCCATCCAGTAATGTCCACCTACAAGGAGCCACTGAATGGGTGGGTGGACAATCTGTACGGACC

Size

Hit Count

Total Norm

scf7180000415580:227241-227391 -

60.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAAT-------AACCTTCAAAAGCTGCAACTTAAATATTC----CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAGACCTTCCCCTGAGTATCTTCCGACCTTCTGTTAGTAAGTAAATTAGATAGAA--TTTCTATCCATCCTTATAAACT-----CTTGATATTCCCTCCTAGTAATTGCCACCCACAAAGAACCTGTATGCGGATGGATCGACAATCTCTACGGACC

Size

Hit Count

Total Norm

scf7180000415366:318104-318255 +

57.74

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCA-----GATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGGGATCTGCCGATCTGCATCTTTCGTCCTGGCGTTAGTAGGTGAATGGCGTTGGATTCAAAAGGACTCTAATAATCCGTACTCCTGTCTTCCCCAGTAATTGCCAGCTACAAGGAGCCCATGGCCGGTTGGATAGACAACACCTACGGACC

Size

Hit Count

Total Norm

scf7180000415805:401921-402068 +

54.86

GGCAACCTGCCACTGTCCATCTTCC--GACCGGCGATCAGTAAGTGCACCAG----ATTGGGAATAACCTTCAAA-AGCTGCAACTTAAAT----------ATTCCCAGTAATGTCC---ACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
C----------------CATCATCCTGGGCTCGT----GGTATGTAGACTGGTATCATTGGGAGTACCAATCGAACATCTCCTAGTAAATCCCTCTTTCCCTTACTCAATAGTCTCCCCGGCTGCCTACGAGCCGCTGCCCGGATGGGTGGACAACCTCAACGGACCG

Size

Hit Count

Total Norm

scf7180000415769:662881-663023 -

53.56

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT---TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GATAAGCTGCCCATCTTTATCTTCAGGCCTTCAATTGGTAAGATTATT--------TAAGATCTATAAAAATAATATAATATACATGACAAACAGTGGTCTCTACGATTGAGGAACCCATGCCCGGCTGGGCGGACAACTTTAATGGACCC

Size

Hit Count

Total Norm

scf7180000415580:232864-233019 -

53.03

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTC--------------AAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GTTGGCTTGCGTGTCTGCATCTTTCGACCGGCAGTCAGTGAGTGATCTTTCCTTGTCTTAATTGTCTTATTTTTTTTAGCAAAGGTTTTTCCATT-----ATCCAGTCATTGCGGCTCACAAGGAGCCCATCTCCGGCTGGATTGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000413920:152883-153039 -

49.91

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTC----AAAAGCTGCAACTTAAATA------TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATCTGCCTATCTGCATTTTTCGTCCTGCCATTAGTGAGTGATTTTATGTGTATTCTTGCTTCCTGCAAAAATATGTTTGTATGTTTGGTCCCTCTCAGTTTTAGCCAACTTTAAGGAGCCGATGTCGGGATGGATTGACAATCTTCACGGAAT

Size

Hit Count

Total Norm

scf7180000415386:347389-347544 -

47.61

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTC----AAAAGCTGCAACTTAAATA----TTCC--CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGTAAATTCCCCTGCGGCATCGTCCGTCCCAGCATGAGTGAGTATTC-AATTAGGGTTTGCCCTTCTTTTGAAATCTAAAACATACTTATATCTCTCCAAAGTCACCGCTGCTTGGAAGGAACCACTTCCCGGATGGACCATTTCGAAGAACGGACC

Size

Hit Count

Total Norm

scf7180000415191:181715-181863 -

45.85

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAA----GTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT----TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATT-CGGACC
-----CCTGCCGCTGATAGTCTACCGTCCATCCATAGGTAATCCAGTAATCCAGTTATCCAGTAATA---TAAAACTATATCTCGATTCCCCTTACCCAGTTCTCTTTGCCGTGGACGACCCTTCGCCTGGGTTTTCGCCCTCACTGATGGGCGCC

Size

Hit Count

Total Norm

scf7180000415866:252797-252957 -

43.4

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATT--------------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTA---TTCGGACC
TCGGGACTGCCGGCAGCCATAGTCAGGCCATCGATTGGTGAGTTTCC---ACTGGGGAGAGCTCAATAAAAATCATTCTTAACTATTGTTTTGCCTCCATTTACAGTATACGGCACCTTGGAGCACCCGATGAAGGGCTGGGTGGGAAACGCGAACTCTGGGCA

Size

Hit Count

Total Norm

scf7180000415183:72152-72316 +

38.77

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAA--------------------------TATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AATAAGCTGCCCATAATCATCACAAGGCCCTCGATTGGTGGGTAAACCCAGC-----CTACTTTTCT---GTTGCCTCCTGGTTAATTGCTTAATTAAATCCGCTTTTTGTTTTGCAGTAACGGCCGCCATTCACGAGCCTTTGCCCGGCTGGATCGAGGGCGTCAATGGTCC

Size

Hit Count

Total Norm

scf7180000415420:272121-272190 +

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000415700:395924-395981 -

26.9

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------------------CAGTGATCACCACTTACCGCGAACCGGTCACTGGCTGGATCGACAACATGTACGGTCC

Size

Hit Count

Total Norm

scf7180000415366:315149-315209 +

26.21

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
--------------------------------------------------------------------------------------TTTCAGTTTTATCCACCTATAACGAGCCCGTGCGGGGTTGGATTGATAGCCTGCAAGGAAT

Size

Hit Count

Total Norm

scf7180000415870:482383-482474 +

25.03

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GACCAGCTGCCCGCCGTGATCCTGCGACCCTCGATC-------------------------------------------------------GTGATCCCCATCTGGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGGCC

Size

Hit Count

Total Norm

scf7180000415420:270872-270923 +

22.07

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TTCCACATGCCGGCGGGCATCTTTCGACCGCCCATAGGTGAGTGTGGGAGGT-----------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000415700:396362-396406 -

21.38

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAACCTGCCAGTCACCATCTTCAGACCCGGCATTGGTGAGTTC------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000415366:314759-314801 +

20.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGGACCTGCCAGTCGGCATTTACCGACCGGCCATCGGTGCGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droEle1 - 20 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000490967:720355-720501 +

83.98

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACT-TAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GACGCCCTGCCCTTGTGCATCTTCCGACCGGCGATCAGTAAGTGCTCCCGATTGGAATTGACATTCA-AAGCTACAACCACAAATATTCCCAGTAATGTCCACCTACAAGGAGCCACTGCGTGGGTGGGTGGACAACCTATTCGGACC

Size

Hit Count

Total Norm

scf7180000490731:46326-46475 +

61.22

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACC-AGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC--CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGGGATCTGCCCATTTGCATCTTTCGCCCTGGCGTCAGTAGGTGAACGTCGACTGGGTCTCCCTTGCTCCACTAACACTTTCGCTTCTCCTCCAGTTATTGCCAGCTACAAGGAGCCCATGAACGGCTGGATCGACAACCTCTACGGACC

Size

Hit Count

Total Norm

scf7180000490967:717474-717620 +

56.91

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCT-TCAAAA-------------------------GCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GTCGGCTTACCCCTTTGCATCTTTCGACCGGCAGTCAGTAAGTA----------------ATCTCTCAAACTCCTTCGCTCTGTGTCAATGGTTTCTCTACAA----------TCCAGTCATTGCGGCCCACAAGGAACCCATCTCCGGCTGGGTTGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000490967:723531-723686 +

56.24

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAA------------------TATTCC---CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCGACCTTCCTCTAAGTATCTTTCGACCATCAGTTAGTAAGTACATTGGC------------CAGACAAGCTGTACTTCTGATATATATATATATTTATATATTCCATTTAGTTATTGCCAGCCATAGAGAGCCAGTTGCCGGCTGGATGGACAATCTCTACGGACC

Size

Hit Count

Total Norm

scf7180000490141:480102-480257 +

48.15

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATA------------------TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GATAGACTGCCTATCTTTATCTTCCGTCCGTCGATTGGTGAGCTTAA----------ATAATTTCTGTAAAATCTATATTATATAATATAGATTCCCATATCTATTCAAGTGGTCTCTACAATTGAGGAACCCATGCCTGGTTGGGCGGATAACTTCAATGGACCC

Size

Hit Count

Total Norm

scf7180000491214:1927146-1927294 +

46.52

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAA------------ATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGCAAATTCCCCTGCTGCATTGTCCGTCCCAGCATGAGTGAGTAT--TTAATTAAGTTTCTCTCCTCTATCCTAAAACTTAACTAAAACTTTATATAACTACAGTCACCGCTGCTTGGAAGGAACCGCTTCCTGGCTGGA--------CTATTTCGAAA

Size

Hit Count

Total Norm

scf7180000491214:1920608-1920762 +

46.19

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTT----CAAAAGCTGCAACTTA------AATATTCCCAGTAATGTCCACTTACAAGGAGCCC---CTGGTTGGATGGGTGGACAACCTA---TTCGGACC
TCTGGACTGCCAGCAGCCATAGTCAGGCCATCAATTGGTACGTTAAGCCTGTTGAAATGT----TGACAAAAATTATTTAAATTATTGAACAATTCTACAGTTTATGGCACCCT----GGAGCACCCGATGAAGGGCTGGGTGGGCAACGCGAACTCTGGTCA

Size

Hit Count

Total Norm

scf7180000491107:364879-364993 +

44.14

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAAT--------AACCTTCAAAAGCTGCAACTTAAATAT-----TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
C----------------------------------------------TGGACGGGGAATCGAATCCCAATCCCCGCCAGCCTGAACTCAAATCCCGTCCGCCCAGTGTCGCCTTCGGCATACGAGCCCGTGCCGGGATGGGTTGACAACCTGAACGGACCC

Size

Hit Count

Total Norm

scf7180000491008:64471-64627 -

43.53

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCA------CCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT-----------------TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
AATAAGCTGCCTATAATCATCACAAGGCCCTCGATTGGTGGGTATTGGAGTGCCTGCATGTCGG--------------TGCCTCCTGGCTAATTGCTTTATCAAACCCGTTGCAGTGACGGCGGCCATTCACGAGCCACTGCCCGGCTGGATCGAGGGCGTCAACGGACCC

Size

Hit Count

Total Norm

scf7180000491214:1891444-1891528 -

34.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
----------------------------------------------------------TAATTTTGAAAAAT----ATTTGTAACTTTTTAGTGACCGCCAGTCTGAATGAGCCTTTTGCCGGATGGGTGGACAACTTTAATGGGCC

Size

Hit Count

Total Norm

scf7180000491268:972309-972378 -

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000491186:1320513-1320592 +

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCC--------CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
---------------------------------------------------------------------------AATTTGAATATTTCACCCTTTGCAGTTTTAGCCAACTTTAAGGAACCGATGTCGGGATGGATTGACAATCTTCACGGACT

Size

Hit Count

Total Norm

scf7180000491186:1319778-1319838 +

27.59

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGGACCTGCCCATCTGCATTTTTCGACCTGCGATAAGTGAGTGGATTTGAATGTAAAGAA--------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491268:973766-973825 -

24.83

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TTCCACATGCCGGCGGGCATCTTTCGACCGCCCATAGGTGAGTGGGTGGCGTGCGGAATA---------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491107:1309205-1309297 +

24.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTA-TTCGGACC
GACCAGCTGCCCGCCGTGATCCTGCGGCCCTCGATC-------------------------------------------------------GTGATCCCCATCTGGAAGGAGCCCATTCCGGGCTGGACGGACAACATCAACGGGCCC

Size

Hit Count

Total Norm

scf7180000491261:1396257-1396299 -

19.31

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAAAACATGCCAGTCACTATCTTTAGACCGGGCATTGGTGAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000490731:42807-43068 +

19.22

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC------------------------------------------------------------------------------------------------------------------------------------------------ACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAGACCTGCCAGTCGGTGTTTTCCGACCAGCCATCAGTACGTACCTATCTATATTTCACCATAACTAGTGAGAGTTTAACCATTTAATTACTTCCGATCTCAAAGGTGGAATGAGATAAGAATTAAGAACCTTCGCTTCTCAATAAATCACTTTTCTATCAAAAAGTAGTAGACCCCTTCTAAACTCAACCTCTTTGGT-----------------------------CTTGCAGTTTTCTCCGTCTTCAAGGAGCCATTGCCCGGTTGGGTTGATGGCTTGCAAGGATT

Size

Hit Count

Total Norm

scf7180000491214:1891787-1891829 -

18.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTAATCTGCCCGTTGCCATTGTGAGGCCATCGATTGGTGAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491107:363405-363451 +

18.62

Size

Hit Count

Total Norm

scf7180000491001:1649287-1649323 -

15.14

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----CCTGCCGCTGATCGTGTACCGTCCGTCAATAGGTAA----------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droRho1 - 17 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000778413:42160-42305 -

85.8

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCAACCTGCCCTTGTGCATCTTCCGACCGGCAATCAGTAAGTGCACCAGATTGGGGTGGACCTT-AAACGCTGCAACTTAAATATTCACAGTAATGTCCACCTACAAGGAGCCTTTCGACGGGTGGGTGGACAACATGTTCGGACC

Size

Hit Count

Total Norm

scf7180000763433:2468-2617 -

59.78

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAAC--------TTAAATATT-CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCGATCTGCCGCTCTGCATCTTTCGTCCTGGCGTCAGTAGGTGAAGGTCGTTTGGGTCGTC-----GGGGCTCCA-CTAATCCGTGTGCATATCCCCCAGTAATTGCCAGCTACAGGGAGCCCATTAACGGCTGGATCGACAACCTGTACGGACC

Size

Hit Count

Total Norm

scf7180000778413:37771-37925 -

57.43

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCAC---CAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC----------------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGGGACCTGCCCCTGTGCGTCTTTCGACCGTCCATTAGTAAGTACATTTTCAGAGCCAGCAGAACTCCTGATAG-----------ATATTTGTATTTCCTTGGAATGACAGTATTGGCCACGCATAAGGAGCCTGTATCCGGCTGGATTGACAATCTATATGGACC

Size

Hit Count

Total Norm

scf7180000778413:46219-46370 -

56.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCC-------CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GCTGGCTTGCCCCTTTGCATCTTTCGGCCGGCAGTCAGTAAGTGATCTCTAATTGGCT--AACTCCGTCTCTCTCAACATTGGTCTTTCCACAAACCAGTCATTGCGGCCCACAAGGAGCCCATCTCCGGCTGGATCGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000779467:692547-692690 +

56.37

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT--TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GACAAGCTGCCTATTTTTATTTTCCGTCCGTCGATTGGTAAGC-TATAGTATTTGGTAAAATCAATATTA-----TATTAGTATATCCTTACAGTGGTCTCCACAATTGAGGAACCCATGCCCGGTTGGGCAGATAATTTTAATGGACCC

Size

Hit Count

Total Norm

scf7180000779528:93936-94063 -

45.04

GGCAAC--CTGCCACTGTCC---ATCTTCCGACC-GGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCA------ACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GTAAAAGTCCTTCTCCGTCTGCGATTCTCTGGCCGGGCGAACA-------------------------------AAGCAGCCATTAATTCTTATTTATTCGCAGTAATGTCAACCTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000779169:135662-135820 +

43.61

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATT-------------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
AATAAGCTGCCCATAATCATCACAAGACCCTCGATTGGTGGGT--ATTGGAGTGCCCATATATATCAGTACCTCCTAGCTAATTGCTTTATTAAACCCGTTGCAGTGACGGCGGCCATTCACGAGCCATTGCCCGGCTGGATTGAGGGCGTCAACGGACCC

Size

Hit Count

Total Norm

scf7180000779506:166561-166684 -

40.24

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAA--------------------------GTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTG-------------------GAT---GGGTGGACAAC--CTATTCGGACC
G-----CTGCCGCTGATAGTGTACCGTCCGTCCATAGGTAATCAAGGCTTCTCCATGGTATACATATGTG--------------------------------------------------------------------CCCCTGACTGATCAGGAACCTTCTAGTTCTCTTCGCGGTGGACGATCCCTCGCCCGGCT

Size

Hit Count

Total Norm

scf7180000780007:234752-234832 +

35.86

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAAA--ATGTCACTTTCCT---------------------------------------------------------------ATATT-ACAGTGATCACCACTTACCGTGAACCGGTCACTGGTTGGATCGACAACATGTACGGGCC

Size

Hit Count

Total Norm

scf7180000762736:7800-7861 -

28.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
--------------------------------------------------------------------------------------TTCCAGTCTCCCCGGCTGCCTACGAGCCACTCCCCGGATGGGTGGACAACCTGAACGGACCG

Size

Hit Count

Total Norm

scf7180000768901:29683-29775 -

24.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTAT-TCGGACC
GACCAGCTGCCCGCCGTGATCCTGCGGCCCTCGATC-------------------------------------------------------GTGATCCCCATCTGGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAATGGACCC

Size

Hit Count

Total Norm

scf7180000779237:5175-5237 -

24.14

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
------------------------------------------------------------------------------------ACTTGCAGTTTTTTCCATCTTCAAGGAGCCATTGCCAGGTTGGGTTGATGGATTGCAGGGGAT

Size

Hit Count

Total Norm

scf7180000779237:5477-5521 -

20.69

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GCTGACCTTCCAGTCGGTATTTTCCGACCAGCCATTAGTACGTAC------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000780007:241412-241454 +

20.69

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAACATGCCAGTCACTATCTTCCGACCGGGCATTGGTGAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000780007:234253-234295 +

20.69

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAACATGCCAGTCACTATCTTCCGACCGGGCATTGGTGAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000759425:54823-55096 -

18.93

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACC------------------AGATTGGGAA--------------------------------------------------------------------TAACCTTCAAAAGCTG------------------------CAACTTAA-----------------ATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTAATCTGCCTGTTGCCATTGTGAGGCCATCGATTGGTGAGTTGGCTGCAAAACGAGTTATCATAAGATCGGGAAACCAATAAAGATAACGTAATTTGTTGAATGGGAGCTAAATGGCTTAGAAATAGTTATTGTCATCTAGATTATTTCTAAAAGTTGACAAATATTTACATTAAATTAAAGCAGGCTTAATTTTTGTAAATATTTCTTATTCGCAGTGACTGCCAGTCTGAACGAGCCTTTCGCCGGATGGGTGGACAACTTCAATGGGCC

Size

Hit Count

Total Norm

scf7180000762736:10949-10995 -

18.62

Size

Hit Count

Total Norm

droKik1 - 21 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302475:105618-105766 -

70.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCT----TCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTGCCCCTGTGCGTCTTCCGACCGGCGATCAGTAAGT-TAATAAATTAGGA-TACCCCAGAATCTGGCGCTGCAACTAACTTATCCTTAGTTATGCCTACCTACAAGGACCCCGTCGTTGGATGGACGGAGAATTTATATGGACC

Size

Hit Count

Total Norm

scf7180000302475:103207-103356 -

69.78

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCT----TCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTGCCCCTGTGCATCTTCCGACCAGCGATCAGTAAGTTTTCGTTATTGAGGATACCCTGAACTGTGAAACTGGAAATTGCCTATTT-CAGTTATGCCCACCTACAAGGACCCCGTAATTGGCTGGATGGATAATCTCTTCGGGCC

Size

Hit Count

Total Norm

scf7180000302475:100063-100204 -

67.29

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTGCCCATGTGCGTGTTCCGTCCGGCGATCAGTAAGTAAATAAAAAAGGATACGAT-----GACGCTGTTAATTAGCTGCTCTCAGTTATGTCTACCTACAAGGACCCCGTCGTTGGATGGACGGACAATCTGTACGGACC

Size

Hit Count

Total Norm

scf7180000302411:881324-881474 -

65.27

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT------TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTGCCCATCTGCATCTTCCGGCCCGCAATCGGTAAGTGAATGGGATTAATGAT--TCTCCGAACTGTGATGCTTAAACATTTCAATTCCTAGTTATGCCCACCTACAAGGATCCCTTGCTTGGTTGGGCAGACAATCTGTTTGGACC

Size

Hit Count

Total Norm

scf7180000302706:1799973-1800112 +

59.47

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACT----TAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCAACCT------GTGCATCTTCCGACCGTCGATCAGTAGGTGAATGATG----TGCTAAGCTTTG-GCGTTGTAACTAACTAACCTATTCATAGTTATGCCGGTCTGCAAGGAGCCCGAGGTTGGGTGGACAGAAGGTTTAAACGGTCC

Size

Hit Count

Total Norm

scf7180000302475:107890-108040 -

57.23

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAA----TAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGGCCTGCCTCTTTGTGTTTTTCGGCCTGCCGTCAGTAAGTCAACTGCATCCTTAAGAATGAATATCCCAAAACAAAAAGTTTATCCATCATAGTTATTGCGGCCCATAAGGAGCCCACCAGCGGCTGGATTGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000302810:787086-787231 +

56.39

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT------------------GCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GATGGCTTGCCGTTGTGTGTCCTTCGATCAGGGTTTAGTAAGTCTTTGATAAAAAGGGATTGTATATAACTAAAGCTATCCTTC-------------------TTCCCAGTAATGTCCACCTACAAAGAGCCTTTGATAGGCTGGACAGGCCATGTCTCCGGGCT

Size

Hit Count

Total Norm

scf7180000302475:283841-283992 -

55.9

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGC---------AACTTAAATATTCC----CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCGATCTCCCGTTTTGCATCTTTCGTCCTGGCGCCAGTAGGTGATGTAGTCAGCGGC--------TGAGGCTATGCCCCACTAACCCGAAGTATTCTCCTTCAGTTATTGCCACCTACAAGGAGCCGATGTCGGGCTGGATTGACAACTTATATGGACC

Size

Hit Count

Total Norm

scf7180000302475:96905-97062 -

53.92

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGC------AACTTAAATATTCCCAGTAATGT-------------------CCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAGACCTTCCCCTGAGTGTTTTTCGCCCGGCAATTAGTAAGTGTGCC--------------TTTAACAAGTTTCGTTGTGAGTTTAAACACTTGAATTATTGTCCTTTATATTAAGTTATTGCCAGCCACAAGGAACCTGTTTTCGGATGGATGGATAATCTCTATGGACC

Size

Hit Count

Total Norm

scf7180000302724:437079-437224 +

52.88

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAG------TGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
G-----CTGCCCATCTTTATCTTTAGGCCATCAATTGGTAAGGTTTTGTTTATACAATTTGTAAATTCCTTCA---TTTAAAATCCCTTTATTTACAGTGGTTTCCACCATTGAGGAGCCCATGCCCGGCTGGGCGGATAATTTCAATGGACCC

Size

Hit Count

Total Norm

scf7180000302475:93871-94026 -

51.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCA-------------GATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAGACCTTCCCCTGAGTGTTTTTCGCCCGGCAATTAGTGAGTGTTCCTTTGTATCATTTACAATTTAAGTTAGTTTTAAATTGTTGTAATTTATC----TAAAGTTATTGCCAGCCACAAAGAGCCTGTTAGCGGATGGATTGATAATCTCTACGGACC

Size

Hit Count

Total Norm

scf7180000302778:157373-157531 -

47.01

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAAT-----------AACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
AGTAAGCTGCCCATAATCATCACACGGCCCTCGATCGGTACGTAGCCAAGTGTCTGGCCCGGTTAATTGCTTTATTAACAAAAAAAAATAAAACCATTTGCAGTGACGGCCGCCATCCACGAGCCATTGCCTGGCTGGATTGAGGGAGTGAATGGACCC

Size

Hit Count

Total Norm

scf7180000302276:789907-790070 -

45.82

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGA------------------------------TTGGGAATAACC-----TTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATCTGCCAGTCACCATCTTCAGACCGGGCATAGGTGAGTTAGAACGTTTACTCCTTGGTTTTTACGGTTCTTTAAAATTCTAAGTAACCGATTTTTG------------------AATTACAGTGATCACCACTTACCGCGAACCGGTCACTGGCTGGATCGACAATATGTACGGCCC

Size

Hit Count

Total Norm

scf7180000302470:868566-868721 -

45.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC-------ACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATT--CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGTAAATTCCCCTGCGGCATTGTCCGTCCCAGCATGAGTGAGTGTCCATTGAAGCAGACCTGCTAGCTTCTCCATAAACTAATACTCATCCTCTTACTTAGTCACCGCCGCTTGGAAGGAACCCATTCCCGGATGGACCATTTCAAAGAATGGACC

Size

Hit Count

Total Norm

scf7180000302266:152810-152879 -

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000302366:962290-962379 -

32.41

GGCAACC---------TGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG--CACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GACCACTACGAGTCCATGCCGGTGATCATCGCCCGCCCCAGCATCGGTAAGTGACCTCTTGACTAAGGAGCTCCGGCTCCAGCTGCCTCT--------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302475:287447-287645 -

32.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG----CACCAGAT------------------------TGGGAATAACCTTCAAAA---------------------------GCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGTGACCTGCCCATCGGCATTTTTCGGCCAGCCATTAGTGGGTATTGCCTCCAGATTATTTCTGATAAGCTTTTTTTCAGTGCAGTTAACCCACTGAGACTCATTGCTGTTTTTCTTTTTATAAAAATGCATGTTA---TTTTCCAGTTATGAACAGCTACAAGGAGCCGTCGCCAGGTTGGATTGAAGGCATGCAAGGTTA

Size

Hit Count

Total Norm

scf7180000302476:2754103-2754198 -

25.43

GGCAACCTGCCACTGTCCAT---CTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
TTCGACCAGTTACCGGCCGTGATCCTGCGGCCCTCGATT-------------------------------------------------------GTGATCCCCATCTGGAAAGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCC

Size

Hit Count

Total Norm

scf7180000302366:959132-959177 -

23.95

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
--------------------------------------------------------------------------------------------------CTGCTTAC---GAGCCGCTGCCCGGATGGGTGGACAACCTGAACGGACC

Size

Hit Count

Total Norm

scf7180000302266:154208-154253 -

20.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TTCCACATGCCGGCGGGTATCTTTCGACCGCCCATAGGTGAGTGTA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000302696:669557-669604 -

18.35

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----CTTGCCGCTGATTGTTTACCGTCCCTCTATAGGTGAG-GCACTGGATT----------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droAna3 - 16 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13340:7435217-7435360 -

63.5

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCAGCCTGCCAGTCAGCATTTATCGGCCTTCCATAAGTAAGTACTATATACGTCCTGCTGTCTTATAAAATTGTTATTT---TTTTTCTAGTAATTGCCACATATAAGGAGCCATTAGTTGGATGGGTGGATAACCTTTATGGACC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................AATGTGATTT---TTTTTCTA........................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......TGCCAGxCACCATTTATCGG........................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.............................TTCCATAAGCGAGTACTA....................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_13340:7440963-7441107 -

62.09

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCAC------CAGATTGGGAATAACCTTCAAAAG----CTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TGCGACCTGCCAGTGTGCATCTTTAGACCGGCAATCAGTAAGCAATCTCTTTTCACACTACAAGGATCTTTCTGAAATTCACTAAA------------ACAGTCATTGCAACTCACAAGGAGCCAGTCTCGGGCTGGATAGACAACATGTACGGGCC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13340:7438698-7438847 -

58.73

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG---------------------------CA-------CCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAAGCCTACCAGTATGCATCTTCCGACCTTCATTTAGTAAGTAACTGTATATATATACACTGCAGTGTTGTAACAAATGCCGTTTTTGG-------------------------------TCTAGTAATTCCAACCTACAAGGAACCATTAGTTGGATGGATAGATAACCTTTATGGACC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13340:7604694-7604841 -

56.35

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAA----------CCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGATCTGCCGATCTGTATATTTCGTCCTGGCGTTAGTAGGTGGATG-----TGGAGTAGAGTCATACGGCCCTCTTGA----CCATTGGTTTCTTTCTAGTTATTGCCACCTATAAGGAACCCGTGGCCGGTTGGATTGACAATTTGTACGGACC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................AGAGTAGGTGGATG-----TGGAG...................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
......................................TAGGTGGGTG-----TGGAGTCGA...............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................GGTGGAGG-----TGGAGAAGAGT.............................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_13340:7430361-7430496 -

53.6

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCA-------------ACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GAAAATCTGCCAATCTGCATCTTTCGACCTGCCATCAGTAAGTT------------AGTTTCCCTCGAAAAGTGCATACGCCAGCTACAGACATAATATATCCATT-----TGAATTGCAA--AGTCATTCTTTTATAGGGTGAAGAACCTTTGC-----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................................................................................................................TTTAAAGGGGGAAGAACCT.........	19	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................TTAAAGGGGGAAGAACCTT........	19	1	1.00	0.00	0.00	1.00	0.00

scaffold_13266:14081972-14082126 -

47.9

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCC------------------AGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGG-ACC GGTAATCTGCCCGTTGCCATTGTAAGGCCATCGATTGGTGAGTTTCCTAT-----------CATTTAAAATTAAGAGTTTAAATTTTACTAACAATTTTGTATGCCACAGTGACTGCCAGTCTGAATGAGCCTTTCGCCGGCTGGGTGGACAACTTCAATGGGCCG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................................................................................................................CTTTCGCCGGCTGGGTGGA................	19	1	1.00	0.00	0.00	0.00	1.00
......................................................................................................................................TTGCCGGTTGGGTGGACA..............	18	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................TTAGTAATAATTTTGTATG..............................................................	19	1	1.00	0.00	0.00	1.00	0.00

scaffold_13340:7432512-7432674 -

47.66

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATT------------------------------------------------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GAAGGACTGCCCATCAGCATTTTTAGACCTGCTATAAGTAAGT--------------------------------AATTTGAGTATTTTAATGCTATATTATATAAAGTTAGTGCTATATTCATTAAATTATCTCTTCAGTAACTGCTACTTGGAAGGACCCAGTGGCTGGGTTTATAGACAACTTATACGGGCC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................................................................................................................................ACTGCAACTTTGAAGGA....................................	17	1	1.00	0.00	0.00	1.00	0.00

scaffold_12929:1989831-1989985 -

42.25

GGCAAC--------CTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC ACCACCGTCATCGGCTGCCCTTGATAGTCTATCGTCCTTCCATTGGTAATTATTCATTTTTGAGAAATAAAATCAATCATAAGGACTCCCAAATACGCAGTCCTTTTCGCCGTGGATGATCCTTCGCCGGGCTTCTCGCCCTCCCTGATGGGGGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............CTGCCCTTGATTGTCAATC..........................................................................................................................	19	1	6.00	0.00	1.00	0.00	5.00
..................................................................................................................GATGATxCTTCGCCGGTCT......................	18	1	4.00	0.00	4.00	0.00	0.00
..............CTGCCCTTGATTGTCAAT...........................................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00
..............CTGCCCTTGATTGTCCATC..........................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...............TGCCCTTGATTGTCAATC..........................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_13340:7790946-7791111 +

41.32

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATA--------------------TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C
AATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGGTACGTAT-CCAAGTTGCTGGCTGCCTTCATG-TCCGCCGGTTAATTGCTTTATTATTTCAAACCCCCTTTGCAGTGACGGCGGCCATCCACGAACCGCTGCCCGGCTGGATAGAGGGGGTGAACGGGCCC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13337:13055554-13055623 +

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC -----------------------------------------------------------------------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................................................................................................TTGCCGGCxGGACTGATAAT...........	19	1	1.00	0.00	0.00	1.00	0.00

scaffold_13340:7430188-7430249 -

28.97

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-------------------------------------------------------------------------------------TTTTCAGTCATCGCCAGTTTCAAGGAACCCACCTCAGGATGGATCGACAATTTGTACGGACC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13340:19749296-19749357 +

27.59

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC TTC-------------------------------------------------------------------------------------ACAGTAATTACTACCTACCGTGAACCGGTTACTGGCTGGATTGACAACATGTATGGTCC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................................................................TGGTTTGACAACATGTATT....	19	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................TGGATGGACAACATATATG....	19	1	1.00	0.00	0.00	1.00	0.00

scaffold_13266:15297135-15297227 -

23.84

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GACCAACTGCCCGCTGTAATCCTTCGGCCCTCGATT-------------------------------------------------------GTGATTCCCATCTGGAAGGAGCCTATTCCCGGTTGGACGGATAACATCAACGGACCC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13266:12107937-12107975 -

21.38

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- G-------------------------------------------------------------------------------------------------------------AGCCACTGCCTGGCTGGGTGGACAACCTCAACGGACCC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................................................GCCTGGCTTGGAGGACAAC............	19	1	13.00	0.00	13.00	0.00	0.00
....................................................................................................................TGCCTGGCTTGGAGGACAAC............	20	1	10.00	0.00	10.00	0.00	0.00
....................................................................................................................TGCCTGGCTTGGAGGACA..............	18	1	2.00	0.00	2.00	0.00	0.00
....................................................................................................................TGCCTGGCTTGGAGGACAA.............	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................GCCTGGCTTGGAGGACAACC...........	20	1	1.00	0.00	1.00	0.00	0.00

scaffold_13340:19749024-19749069 +

21.38

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATCTGCCAGTCACAATCTTCAGACCCGGAATCGGTGAGTGAA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13266:12111395-12111450 -

20.0

GGCAACC------------TGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC CGCGACCACTACGAGTCCATGCCGGTGATCATTGCCCGTCCCAGCATCGGTAAGTG-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................ATCATTGCCTGTCCCAGCATT...............................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00

droBip1 - 18 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396708:1418496-1418640 +

62.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATA-----ACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
GGTAGCCTACCGGTCAGCATTTATCGACCTGCCATAAGTAAGTGCTGTAT--T---AATATTTCTGTGTTCTGAAACTGTTATT---GTTTCTCTAGTAATTGGCACTTACAAGGAGCCATTAGTTGGGTGGATAGATAACCTCTATGGACCG

Size

Hit Count

Total Norm

scf7180000396708:1409482-1409625 +

61.32

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGC--------TGCAACTTAAATATT----CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTAGTCTACCGGTCAGCATATTTCGACCTTCCTTTAGTAAGAAC-CCAAAT--------------AAATACTGCTGGGTGGCGACATTTATATTTTCTTTCAGTAATTCCCACCTACAAAGAGCCATTAGTGGGATGGATAGACAACCTGTATGGACC

Size

Hit Count

Total Norm

scf7180000396708:1412324-1412469 +

60.51

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCA--------ACTTA------AATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTAGTCTACCGGTCAGCATATTTCGACCTTCCTTTAGTAAGA-AACCAAAT--------------AAATACTGCTGGGTGCCGACATTTATTGTTTTTTTTCCAGTAATTCCCACCTACAAAGAGCCATTAGTTGGATGGATAGATAACCTGTATGGACC

Size

Hit Count

Total Norm

scf7180000396708:1406478-1406621 +

60.37

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACC------------------------------AGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TGCGACCTACCCGTATGCATCTTTAGACCGGCAATCAGTAAGCAATCTTTTTTCTTATTCCAAGGATCTTTCTGAAATTATTTAAA---------------------------------AAGTCATTGCAACTCACAAGGAGCCCGTCACCGGCTGGATAGACAACATGTACGGACC

Size

Hit Count

Total Norm

scf7180000396708:1415338-1415482 +

58.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC----CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTAGTCTCCCGGTCAGCATATTTCGACCTTCCTTTAGTAAGAAACCAACAT------AAATTGTTGCTGGTTGTGAATTAAATTTTTTCTTTCAGTTCTTCCCACCTACAAGGAGCCATTAGTTGGATGGATAGATAACCTCTATGGACC

Size

Hit Count

Total Norm

scf7180000396708:1421103-1421245 +

55.6

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCA--CCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GAAGGTCTTCCTATTAGCGTTTTTCGACCTGCTATAAGTAAGTGATTTCAGGATTTTAGTTTGTACTATATGTTTTT------TGATTCTTCAGTAACTGCCACTTGGAAGGACCCAGTAGCTGGGTTCATAGACAACTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000396708:1244196-1244343 +

53.5

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAAT------AACCTT-CAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGATCTACCCATCTGTATCTTTCGGCCTGGCGTTAGTAGGTGGATGTGGATTAGAGTCGTAGAGCCCTTTTGACCTTTG--CTT----TCTTTCAAGTTATTGCCAGCTATAAGGAGCCGGTGTCCGGCTGGATTGATAATTTGTACGGACC

Size

Hit Count

Total Norm

scf7180000396543:447776-447924 -

49.6

GGCAAC--CTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGC------AACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GCCATCGGCTGCCGCTGATAGTCTATCGTCCTTCCATTGGTAATT--ATTATTTTTGGAAAAAC----AAAAACCTCACTAAGGACTTCCAACTACATAGTCCTTTTTGCTGTGGATGATCCTTCGCCTGGTTTCTCGCCCTCCCTAATGGGGGC

Size

Hit Count

Total Norm

scf7180000396589:977660-977790 -

47.32

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGGATTCCCCCACCGTCTGCCATTCT--CGAGGATGCCGGAGCGAACAAAGCAGCCATTAATT--------------CTTATTTATTCGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

scf7180000396759:2024991-2025141 -

46.19

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC-------ACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGCAAGTTCCCATGCGGCATTGTTCGTCCCAGCATGAGTGAGTTTCAAACTTATCAGT--TGGTAAA-CTTTATAAAATCTTTGGATAATCTAATCTAGTCACTGCTGCCTGGAAGGAACCCATTCCCGGCTGGACCATCTCCAAGAACGGTCC

Size

Hit Count

Total Norm

scf7180000396708:1423442-1423560 +

43.77

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CCAA---------------------------AGTTCTATCAGTGCAACTATTACATAGTAAT-GTCAAAGGAACTTGTTTTTACTTTTTCAGTCATTGCCAGCTTCAAAGAACCCACTTCCGGGTGGATCGATAATTTGTATGGACC

Size

Hit Count

Total Norm

scf7180000396413:2642857-2642967 -

43.56

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAA---GCTGCAACTTAAATATTCCCA-GTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATCTGCCAGTCACCATCTTCAGACCCGGAATTGGTGAGTTG----AAATCAGGTTTATTTT-AAGTGTTGTTTTAGCAGAAGTATTTCAAGGTGATGATCTTTTACTTGTAG-----------------------------------

Size

Hit Count

Total Norm

scf7180000396708:1057145-1057310 -

40.04

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAAT--------------------ATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C
AATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGGTACGTAT-CCGAATGGCTGGCTGCCTTCATG-CCCGCCGGTTAATTGCTTTATTATTAAAAACCGCCTTTACAGTGACGGCGGCCATCCACGAACCACTGCCCGGCTGGATCGAGGGGGTGAACGGGCCC

Size

Hit Count

Total Norm

scf7180000396708:1423261-1423336 +

32.41

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GAAAATCTGCCGATCTGCATCTTTCGACCTGCCATCAGTAAGTTAGTTTTCCTCAAAATAACGCATAATACCTCCA-----------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000396547:1750814-1750906 +

24.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C
GATAAACTGCCCGCTGTAATCCTTCGACCTTCGATT-------------------------------------------------------GTGATTCCCATCTGGAAGGAGCCTATTCCTGGATGGACGGATAACATTAATGGACCC

Size

Hit Count

Total Norm

scf7180000396547:370537-370575 +

21.38

Size

Hit Count

Total Norm

scf7180000396547:367150-367205 +

20.69

GGCAACC------------TGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CGCGACCACTACGAGTCCATGCCGGTGATCATCGCCCGTCCCAGCATCGGTAAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000396413:2642612-2642646 -

15.86

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
----------------------------------------------------------------------------------------------------------------CCGGTGACTGGCTGGATTGACAACATGTATGGTCC

Size

Hit Count

Total Norm

dp4 - 19 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2:5291706-5291847 -

62.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGACTTGCCGCTGTCCATCTTTCGTCCAGCAGTTAGTAAGTGATTTGCGTGCAGAATAACT-----GAATTTCATGATCAATAATTGCAGTCATGGCAAGCCACAAGGAGCCCGTCGCAGGCTGGATCGATAACCTCTATGGACC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................................TCAAGGATCCCGTCGCAG.........................	18	1	1.00	0.00	1.00	0.00	0.00

chr2:5289357-5289507 -

57.87

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAA----TAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCGATTTGCCCTTGTGCATTTTTCGACCAGCCATTAGTAAGTGCTTAAAGAGGGGTCATCGGAATTTTCTAAAAATTTTCTTTCCATGATCACAGTTATTGCCACCTCCAGCGAACCCGTGTCAGGTTATATTGACAATCTTTACGGACC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr2:5446466-5446619 -

56.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC-ACCAGATTGGGA----ATAACCTTCAAAAGC-TGCAACT-TAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGGGACATTCCGTTGTGCGTCTATCGGCCTGGCGTTAGTAGGTGCTGCCAGCTCGGCAAGTGATGCCCTTTTATATCCTCCCTCTTTTTCCACCCACAGTCATTGCCAGCTATAAGGAGCCGATGGCGGGTTGGATCGACAACCTGTACGGCCC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................................CTGCCAGCTCGGCAAGTGATGT........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00

chr2:5294042-5294203 -

55.25

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT---GCACCAGATTGGGAATAACCTTCAAAAG------------CTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTTTTCCTTAGATGATGCAAGGCCTTGGATGGAACTGAAACATTGTGTAACATGACTCTCCACAGTCGTGCCCACCTACCAGGAGCCCGTCGTTGGTTGGACTGACAATCTGTACGGGCC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................................................CCAGGAGCCCGTCGTTGGTTGGAC..................	24	1	1.00	1.00	0.00	0.00	0.00

chr3:15193564-15193720 +

54.73

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG--------------CACCAGATTGG-----GAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTTCCGGTGTGTATCTTTCGGCCTGCCATTAGTAAGTGACTCCTCTGACTGACAGCCGAGTGGCGTTTCGATAACCTCCAATCTTCCCAACGA---------TAGTATTTGCCAACTACAAGGAGCCTTCTTCCGGATGGATTGACAACCCGTATGGACT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr2:13216914-13217065 +

54.08

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC------------------------------------------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC CAGAACCTGCCAGTAACGATCTTTAGGCCGGGCATAGGTTAGCAATC-------------------------------------ATTCCTCATGATTCATTCAAATACTAACGTCTGTCTGCCTTCTTCTACAGTGATCACCACATACCGTGAACCAGTCACCGGTTGGATCGACAACATGTACGGACC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................CGATCTTTAGGCCGGGCATAG........................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................................................................................CCAGTCACCGGTTGGATCGACA.............	22	1	1.00	0.00	0.00	1.00	0.00

chr2:5296203-5296363 -

53.14

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAAT------------------------AACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AGCGACTTACCCATTTGTATCTTCCGACCTGCTGTTAGTAAGTG------ATTGGGAAATGGAAATGTGCTGTGTGATGGGCTCCTTTACCAATGGTTCTT----CATAATTGCAGTCATTGCCAGCCACAAGGAGCCCATCTCCGGATGGATTGATAACCTATACGGACC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................AATTG------ATTxGGAAATGGAAATG........................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...................TCTTCCGCCCTGCTGTTCG.....................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................ATTGGGAATTGGAAATGA.......................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................CATAAxTGCATTCATTGCCA..............................................	19	1	1.00	0.00	0.00	1.00	0.00

chr2:5449796-5449957 -

52.17

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCC-------------------------------------------CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTACCGGTGTGCATCTTTCGGCCTGCCATTAGTAAGTGATGCA-----------------------TGCCACTTAAT-----CCAGTGTCCCTTCAATAGCCCCCCACCCGTTCTTTTTCCTACGATAGTATATGCCAACTACAAGGAGCCTTCTTCCGGTTGGATTGACAATCCATACGGACT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXL_group1e:5588130-5588285 -

50.49

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAG-------------------------------TGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- GATCAGCTGCCCATTTTCATATTCAGGCCATCCATCGGTAAAGACTTGCTTTACGTTATTCCAGATTTTAGCATGTATATAATTCCGTATACCC-----------------------CCACAGTGGTGTCGACTATTCAGGAGCCTGTGCCTGGGTGGGCGGACAACTTTAACGGACCC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................................................................................................TGCAGGAGCCAGTGCCTGGG........................	20	1	1.00	1.00	0.00	0.00	0.00

chr3:19250319-19250462 +

49.98

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGAT--TGGGA----ATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AGTAGCTTTCCCTGCGGCATTGTCCGCCCCAGCATGAGTGAGTGACAGACACACGGGGCTTCTACGCTTTTCGGATATAGAAACTTA--TACTTTCAGTCACGGCGGCTTGGAAGGAACCCATTCCT----GGGTGGACCATC---TCGAAGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.................................TTGAGTGAGTGACAGACAAA....................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00

chr3:19244630-19244787 +

47.63

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGA-------ATAACCTTCAAAAGCTGCAACTTAAATA--TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACA--ACCTATTCGGACC TCAGGACTTCCGGCGGCCATAGTCAGGCCATCGATTGGTAAGCGTTCGATTTATACATTCAAACAGAACCGACAACAATTTATAATTGATTGCTTTTCTAGTGTATGGCACCTTGGAGCATCCGATGAAGGGCTGGGTGGGCAATGCCAACTCCGGCC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................................................................................................AGGGCTGGGTGGGCAATGCCA.........	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................................AAGGGCTTGGTGGGGAAT.............	18	1	1.00	1.00	0.00	0.00	0.00

Unknown_singleton_4015:3201-3370 -

41.9

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGAT------------------TGGGAATAACCTT--CAAAAGCTGCAACTT---AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
ACCAAACTGCCCGTTATCATCACACGGCCCTCCATTGGTACGTT-TCCAGATGATCAGCCAGTCTGCCTCTGTTAATTGCTTTATTAAATTGTGCATGCTCCATTGCCTTTGCAGTTACGGCGGCCATTAGCGAACCACTGCCAGGATGGATTGAGGGCGTTACCGGACCC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr2:14273208-14273377 -

41.9

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr3:19217673-19217882 -

30.91

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC-ACC--AGATTGGGAATAA---CCTTCAAAAGCTGCAACTTAAATATTC----------------------------------------------------------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACC-TATTCGGACC GGTAATCTGCCCGTTGCCATTGTGAGGCCATCGATTGGTGAGTGCTGCCCGAGA--TGAGATGAGACGAGATGAGATCAGCAGCCAGACTGCTGTCAATGCTAATGGTTCCACACATAATTTGTTTTTTGCTCCCCCTCCCCGCCTCCGCGCACAGTGACTGCCAGCCTGAATGAGCCATTTGCTGGCTGGGTGGACAACTTTAATGGGCCG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........................................................GAGACGAGACGAGAGGAG.........................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
........................................................TGAGATGAGATGAGATGAGAT.......................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
.........................................................................................................................TGATTTTTTCTCCCCCTCCCC......................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................TGAGA--TGAGATGAGATGAGAT............................................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
...................TTGTGCGGCCATCGATTTG..............................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
................CCCTCGTGAGGCCATCGAT.................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................CATCGATTGGTxAATGCTGC....................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

chr3:1920043-1920103 -

26.21

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
---------------------------------------------------------------------------------------CCCAGTCTCGCCCGCTGCCTATGAGCCAATTCCCGGTTGGGTGGACAATATGAATGGACCC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr3:10988089-10988180 +

24.17

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGGAGCTGCCAGCCGTCATTCTGCGGCCCTCGAT-------------------------------------------------------AGTTATTCCCATTTGGAAGGAGCCCATTCCCGGCTGGACAGACAACATCAATGGACC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr3:1921677-1921724 -

24.02

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GTCGGCCTAC---------------------------------------------------------------------------------------------------GAGCCCGTGCCCGGATGGGTGGACAATCTGAACGGACC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXL_group1a:99014-99059 -

19.31

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TGCCGCTTACCGCTGATCATCTACCGTCCATCGATAGGTGAGCATA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr3:1923566-1923605 -

15.28

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CA-----TGCCGGTGATTATCGCCCGCCCCAGCATCGGTAAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1 - 20 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_19:1003844-1003985 -

62.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGCGACTTGCCGCTGTCCATCTTTCGTCCAGCAGTTAGTAAGTGATTTGCGTGCAGAATAACT-----GAATTTCATGATCAATAATTGCAGTCATGGCAAGCCACAAGGAGCCCGTCGCAGGCTGGATCGATAACCTCTATGGACC

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_19:1001497-1001647 -

57.87

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAA----TAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGATTTGCCCTTGTGCATTTTTCGACCAGCCATTAGTAAGTGCTTAAAGAGGGGTCATCGGAATTTTCTAAAAATTTTCTTTCCATGATCACAGTTATTGCCACCTCCAGCGAACCCGTGTCAGGTTATATTGACAATCTTTACGGACC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........CTTTGTGCAxTTTTCGACC..........................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00

super_19:1006170-1006331 -

55.8

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT---GCACCAGATTGGGAATAACCTTCAAAAG------------CTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCGACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTTTTCCTTAGATGATGCAAGGCCTTGGATGGAACTGAAACATTGTGTAACATGACTCTCCACAGTCGTGCCCACCTACAAGGAGCCCGTCGTTGGTTGGACTGACAATCTGTACGGGCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................................................GTCGTGCGCACCTACAAA......................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_19:1162676-1162829 -

55.64

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC-ACCAGATTGGGA----ATAACCTTCAA-AAGCTGCAACTT-AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGGGACATTCCGTTGTGCGTCTATCGGCCTGGCGTTAGTAGGTGTTGCCAGCTCGGCAAGTGATGCCCTTTTATATCCTCCCTCTTTTTCCACCCACAGTCATTGCCAGCTACAAGGAGCCGATGCCGGGTTGGATCGACAACCTGTACGGCCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................................................................................TCGACAATCTGTACGGCT.	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................GGCTCGGCTAGTGATGCC.......................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

super_4:3857033-3857189 -

55.3

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG--------------CACCAGATTGG-----GAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTTCCGGTGTGTATCTTTCGGCCTGCCATTAGTAAGTGACTCCTCTGACTGACAGCCGAGTGGCGCTTCGATAACCTCCAATCTTCCCAACGA---------TAGTATTTGCCAACTACAAGGAGCCTTCTTCCGGATGGATTGACAACCCGTATGGACT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_0:7236190-7236341 -

53.47

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAA--CCTTCAAAAGCTGCAACTTAAAT------ATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAATCTGCCAGTAACGATCTTTAGGCCGGGCATAGGTTAGCAATC---ATTCCGCATGATTCATTCAAATACTTACGTCTGTCTGCCTTCTTCTACAGTGATCACCACATACCGTGAACCAGTTACCGGTTGGATCGACAACATGTACGGACC

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_19:1008331-1008491 -

52.58

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAAT------------------------AACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AGCGACTTACCCATTTGTATCTTCAGACCTGCTGTTAGTAAGTG------ATTGGGAAATGGAAATGTGCTGTGTGATGGGCTCCTTTACCAATGGTTCT----TCATAATTGCAGTCATTGCCAGCCACAAGGAGCCCATCTCCGGATGGATTGATAACCTATACGGACC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................................................................CGTGCCCATCTCCGGATG.....................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
......TTATCCATTTGTAGCTTCA..................................................................................................................................................	19	1	2.00	0.00	1.00	0.00	0.00	1.00
.........................................................................................................CATxACTGCAGTCATTGCCA..............................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................................................CATAAxTGCAATCATTGCCA..............................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................CTCCTTTGCCGATGGTTCT----T..................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00

super_19:1165998-1166159 -

51.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTG--------GGAATAACCTTCAAAAGCTGCAACTTAAATATTCC-----------------------CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGACCTACCAGTGTGCATCTTTCGGCCAGCCATTAGTAAGTGATGCATGCCTCTTAATCCAGTG-TCCCTTCAATAGCC---------------CCTCACCCGTTCTTTTTCCAACGATAGTATATGCCAACTACAAGGAGCCTTCTTCCGGTTGGATTGACAATCCATACGGACT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_10972:429-584 +

51.24

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAA----GTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCC----CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- GATCAGCTGCCCATTTTCATATTCAGGCCATCCATCGGTAAAGACTTGCTTTACGTTATTCCAAATTTTAACATGTATATAATTCCGTATACCCCCACAGTGGTGTCGACCATTCAGGAGCCTGTGCCTGGGTGGGCGGACAACTTTAACGGTCCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................................................................TGGGCGGACGACTCTAACGG....	20	2	0.50	0.00	0.00	0.00	0.50	0.00

super_21:508297-508452 -

51.24

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAA----GTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCC----CAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- GATCAGCTGCCCATTTTCATATTCAGGCCATCCATCGGTAAAGACTTGCTTTACGTTATTCCAAATTTTAACATGTATATAATTCCGTATACCCCCACAGTGGTGTCGACCATTCAGGAGCCTGTGCCTGGGTGGGCGGACAACTTTAACGGTCCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................................................................TGGGCGGACGACTCTAACGG....	20	2	0.50	0.00	0.00	0.00	0.50	0.00

super_37:251615-251758 +

49.98

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGAT--TGGGA----ATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AGTAGCTTTCCCTGCGGCATTGTCCGCCCCAGCATGAGTGAGTGACAGACACACGGGGCTTCTACGCTTTTCGGATATAGAAACTTA--TACTTTCAGTCACGGCGGCTTGGAAGGAACCCATTCCT----GGGTGGACCATC---TCGAAGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................GTTCTACTCTTTTCGGAT.............................................................................	18	1	6.00	0.00	0.00	0.00	0.00	6.00
.........................................................GGTTCTACTCTTTTCGGAT.............................................................................	19	1	5.00	0.00	0.00	0.00	0.00	5.00

super_37:245650-245807 +

47.63

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGA-------ATAACCTTCAAAAGCTGCAACTTAAATA--TTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACA--ACCTATTCGGACC TCAGGACTTCCGGCGGCCATAGTCAGGCCATCGATTGGTAAGCGTTCGATTTATACATTCAAACAGAACCGACAACAATTTATAATTGATTGCTTTTCTAGTGTATGGCACCTTGGAGCATCCGATGAAGGGCTGGGTGGGCAATGCCAACTCCGGCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................................GCATCCGATGAAGGGCTGGGT....................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
......................................................................................................................................AGGTGGGCTATGCCAACT......	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................................................................AAGGGTTGGGTGGGCACT.............	18	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................GGTAAGCGTTGGATTTTT........................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................................................................GCATCCGATGAAGGGCTGGGC....................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................GGAGCATCCxTTGAAGGGC.........................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................................................................GAAGAAGCGCTGGGTGGG.................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
........TCCGGAGGCGATAGTCAGG...................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................................................................GGGTCGGAAATGCCAACT......	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_0:6159227-6159396 +

42.4

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGAT------------------TGGGAATAACCTTC--AAAAGCTGCAACTT---AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- ACCAAACTGCCCATTATCATCACACGGCCCTCCATTGGTACGTT-TCCAGATGATCAGCCAGTCTGCCTCTGTTAATTGCTTTATTAAATTGTGCATGCTCCATTGCCTTTGCAGTAACGGCGGCCATTAGCGAACCACTGCCAGGATGGATTGAGGGCGTTACCGGACCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................................................................GATTGAGGCCGxTACCGGA...	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................................AGCGAACCACTGCCGCGA........................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
................................CATTGGTGCGTT-GCCAGA........................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00

super_27:298754-298823 -

32.41

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC -----------------------------------------------------------------------------CTTATTTATTTGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..............................................................................TTATTTATTCGCAGTAATT..................................................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
...............................................................................TATTTATTCGCAGTAATT..................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00

super_37:220073-220282 -

30.91

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC-ACC--AGATTGGGAATAA---CCTTCAAAAGCTGCAACTTAAATATTC----------------------------------------------------------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACC-TATTCGGACC GGTAATCTGCCCGTTGCCATTGTGAGGCCATCGATTGGTGAGTGCTGCCCGAGA--TGAGATGAGACGAGATGAGATCAGCAGCCAGACTGCTGTCAATGCTAATGGTTCCACACATAATTTGTTTTTTGCTCCCCCTCCCCGCCTCCGCGCACAGTGACTGCCAGCCTGAATGAGCCATTTGCTGGCTGGGTGGACAACTTTAATGGGCCG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................................................................................................ATAATTTGATTTTAGCTC...............................................................................	18	1	6.00	0.00	0.00	0.00	0.00	6.00
....................................................GA--TGAGATGAGAGGAGAG............................................................................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
...........................................................GATGAGATGAGATGAGATGA.....................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00	0.00
............................................................................................................................................................................................TGGGTGGACAACTGTAAAGGGC..	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................................................................TTTTGCTGTCCCTCCCCGCC...................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................................GA--TGAGATGAGATGAGATGA..........................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00	0.00
....................................................................................................................TAATTTGATTTTAGCTCC..............................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................................................................ATAATTTGTTCTTTxCTCCCC............................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................................GAGAGGAGACGAGAGGAG.........................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................GA--TGAGATGAGAAGAGAA............................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

super_2:2092998-2093058 -

26.21

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC-
---------------------------------------------------------------------------------------CCCAGTCTCGCCCGCTGCCTATGAGCCAATTCCCGGTTGGGTGGACAATATGAATGGACCC

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_4:6309492-6309583 +

24.17

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AAGGAGCTGCCAGCCGTCATTCTGCGGCCCTCGAT-------------------------------------------------------AGTTATTCCCATTTGGAAGGAGCCCATTCCCGGCTGGACAGACAACATCAATGGACC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................................................TTCCCGGCTGGxCAGACTA............	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................CATTCCCGGCxGGACAGTC..............	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_2:2094632-2094679 -

24.02

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_26:573698-573743 +

19.31

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC TGCCGCTTACCGCTGATCATCTACCGTCCATCGATAGGTGAGCATA-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.........CCGCTGATCATCTACCGTCC......................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00

super_2:2096500-2096540 -

15.94

GGCAACCTGCCACTGTCCATCTTCCGACCGG-CGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
C-----ATGCCGGTGATTATCGCCCGCCCCCAGCATCGGTAAGTG-------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_181108:4575766-4575914 -

58.51

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAA--------CTTAAATATTCCC--------AGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGCAATCTACCAATCTGTATTTTTCGCCCTGGTGTCAGTAAGTCCTCAAAATTC------A--------ACTTGTAACTATAGCTGTTAAATTTTCTCCTTATTATAGTTATTGCCACCGCCAAGGAGCCAGTTTCGGGTTGGATTGACAATTTATATGGACC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................CAGTAAGTGCTCxAAATTC------.......................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180702:4213736-4213878 +

55.97

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACC-TATTCGGACC GATCAGTTGCCCATTTTTATATTTAGACCCTCGATAGGTAAGTTT-CCAAATGGAGTATTAGATTC---CGCTTTAACGTCCCTCTTC-TAGTCATATCCACATTGGAGGAACCCGTTCCGGGTTGGACAGATAATTTTAATGGTCCC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................................................................................ACAGATAATTTTAAGCGT...	18	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................................CAGATAATATTAAGGGTC..	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_181130:12536663-12536821 -

53.34

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT-GCACCAGAT-TGGGAATAACCTTCAAAAGCTGCAACTTAAA-------T--ATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- GGCCAATTACCAATGTCAGTCCTTCGACCAACCTTTAGTAAGCTATAACCGATATTTTCTTAATATTCTAAACCCATAATGCTAATCTAAAATGATTTATTAGTTATGCCAGCTTATAAGGAACCGCTCCCTGGATATATTGATAACTTCTACGGTCCC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................AATGCTAGTCGAAAATGA................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................ATAGTTTCTTAATATTGT..........................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_181089:5364753-5364904 -

50.43

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATT--------CCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC TCTGATCTACCAGTGTGCATTGTTCGTCCTGGCATGAGTAGGTGCGTCAAAATTATTATATAGTGCT---TGCTTAATTTAAATTTCTTACCGCCCTTAGTCATTGCGGCGAATAAGGAGCCAGCATCGGGTTGGATAGACAATCTGTATGGCCC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................TGTCAATTTCTTACCGCCC...........................................................	19	1	1.00	0.00	1.00	0.00	0.00
.................................ATGAGTAGGTGCGTCAAAAT......................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................TGCx---TGxTTAATTTAAATTTCTT..................................................................	21	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................ATAAGGAGCCAGCATCGG.........................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_181089:5361646-5361799 -

49.74

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC------------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGAGATATGCCCATCTGTGTCTATCGGCCTGGAGTTAGTAAGTACAGCAA-----GATCCATTTTCACATGGTGCTTGATTAATAGACTTTCTTTCTTCTACAGTTATTGCTAGCTACAAGGAACCAATGTCGGGTTGGATTGATAATCTCAATGGACC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................................................................................ATGTCGGGTTGGATTGATAATCT.........	23	1	2.00	2.00	0.00	0.00	0.00
................................AGTTxGTAATTACAGCAA-----GATC....................................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
...........CATCTCTGTCTxTCGGCCT.................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..........................................................................CTTGGTAAATAGACTTTC...................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_180569:795544-795700 -

47.04

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAAT------------------------ATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGTAATCTGCCCGTTGCGATTGTAAGGCCCTCGATTGGTAAGT--------------AAAGCCATTAATAACTATAACTTACTACATTCTAACTATGTTTTTCTCTCTGATTTTAGTGACTGCCAGCCTGAATGAGCCATTTGCCGGTTGGGTGGATAATTTTAATGGGCC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................................................................................TCGAATTTTAGTGACTGC................................................	18	1	23.00	0.00	3.00	0.00	20.00
.........................................................................................................TCGAATTTTAGTGACTGCC...............................................	19	1	3.00	0.00	0.00	0.00	3.00
...................................................................................................................................ATGAGCCATTTGCCGGTTGGGT..................	22	1	3.00	2.00	1.00	0.00	0.00
....................................................................................................................TGACTGCCAGxCTGAGTGA....................................	18	1	2.00	1.00	1.00	0.00	0.00
......CTGCCCGTTGCGATTGTAA..................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................GACTGCCAGxCTGGATGAGC..................................	19	1	1.00	1.00	0.00	0.00	0.00
......................................................................................................................................................GGTGGATAATTTTAATGGGCC	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................AAATATGTTTTTCTGTCT...............................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........CCGTTGCGATTGTAAGGCCCT............................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
......CTGCCCGTTGCGATTGTAAGGCCCTCGAT........................................................................................................................................	29	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................................ATGAGCCATTTGCCGGTTGGGTG.................	23	1	1.00	0.00	1.00	0.00	0.00
.......TGCCCGTTGCGATTGTGG..................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...........CGTTGCGATTGTAAGGCCCT............................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
................................................................GTAATAACTAGAACTTACT........................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_181089:11043439-11043617 -

38.49

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACC---------------------------------AGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC CAGAATTTACCAGTGACCATCTTTCGTCCAGGCATAGGTAAGCCCACCCAATCCCAATCCCAATCCCAGTGCCAGTCCATTCTGTTGTCAATGATT-AAAATGTCTTGTTCTTATTGTTAACCAGTTATAACAACATATCGTGAGCCCATCAGTGGCTGGATTGATAATATGTATGGTCC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................................................................................GAACATATGGTGAGCCCA...............................	18	1	2.00	0.00	2.00	0.00	0.00
....................................................................................................ATGTCTTGTTCTAATTGT..............................................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................TCCCAATCCCAATCCCGAT..............................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00
..................................................GTCCCAATCCCAGTCCCAGT..............................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
....................................................................GTGCCAGTCGATGCTGTT..............................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
......................................................................................GCCAATGATT-AAAAAGTC...........................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................................................TGTAACAACAxATCGTGAGC..................................	19	1	1.00	1.00	0.00	0.00	0.00
........................................................GTCCCAATCCCAGTCCCAGT........................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.............................................TCCCAATCCCAATCCCGAT....................................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00

scaffold_181089:1123412-1123598 +

34.83

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT--------------------GCACCAGATTGGGAATAACCTTC-AAAAGCTGCAACTTAAA------------------TATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- AACAAGCTACCCATAATCGTCACAAGGCCCTCGATTGGTAAGTTGCAACTCCATACATGGAGTGTGCCACCTTGTTAATTACTTGGTTAAACCCGCCCCTCAAACCTCTAACGTTTAATGCCTTTTTGCAGTAACGGCTGCCATACAAGAACCACTGCCAGGATGGATTGAGGGCGTCAATGGACCA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................................................................................CATACAAGAACAACTGCT............................	18	2	1.00	0.00	1.00	0.00	0.00
............................................................................................................................................................GCCAGGATGGATGGATGG.............	18	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................................................................GCCAGGATGGATTGAGGGCGT..........	21	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................................................................AAACAGGAACCACTGCCAG..........................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_180698:4114350-4114419 +

32.41

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC -----------------------------------------------------------------------------CTTATTTATTTGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................................TATTTATTCGCAGTAATT..................................................	18	1	14.00	0.00	14.00	0.00	0.00
..............................................................................ATATTTATTCGCAGTAAT...................................................	18	1	12.00	0.00	12.00	0.00	0.00
...............................................................................TATTTATTTGCAGTAATT..................................................	18	2	0.50	0.00	0.50	0.00	0.00
...............................................................................TATTTATTCGCAGTAATA..................................................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180701:933244-933336 +

22.97

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCT-ATTCGGACC AATGAACTGCCGGCTGTTATCTTGCGGCCATCGATT-------------------------------------------------------GTCATACCCATCTGGAAGGAGCCCATACCGGGCTGGACGGATAATATTAATGGACCG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................................................................CAGGAAGGAxCCCATACCGGG.........................	20	1	1.00	0.00	1.00	0.00	0.00

droVir3 - 19 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12875:12811190-12811339 -

59.0

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT-GCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTC--CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGTGATTTGCCCGTCTGCATCTTTCGTCCGGGTTCCAGTGGGTAGCACTAGCTAAACCATTTGATTCATTTGTAAATAGTCCATTAATCATTCAGTTGTGGCGACCAGCAAGGAGCCCGTTGCCGGCTGGATAGACAACATCTACGGACC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13047:13705669-13705811 +

57.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGAGATTTGCCCTTATGCATCTTTCGGCCCGGCATTAGTGAGTGATCAGTTCTGCGGGTAT----CTGAGCATGGCCTTATCATATTTTCAGTTATTGGCAGCTACAAGGAGCCCGTCTCAGGCTGGATTGACAACATCTACGGCCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................................................AGTTATTGGCAGCxGCAAGG.....................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................GAGCAGTTCTGCGTGTAT----CTG...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_12875:4649390-4649543 +

54.92

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAG-TGCACCAGATTGGGAATAACC-------------TTCAAAAGCTGCA--ACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGGGATTTGCCGGTGTGCATCTTTCGTCCAGCTTCCAGTAGGTTGCACTAGTT-------AATCTACTCGATCCCATTGTAAATGCTGCTTTACCCAATTATT--CAGTTGCGGCGACCAATAAGGAGCCTATTTCCGACTGGATAGACAACATCTATGGACC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12875:4652776-4652930 +

53.7

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAA-GTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAA--------------ATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGGGATTTGCCGGTGTGCATCTTTCGTCCAGCTTCCAGTAGGGTGCACTAGT-------TAATCCTCTAAAGCTTATAGTAAACGCCTCTTTTTCCCAATTGCTCAGTTGTGGCTACCAATAAGGAGCCTATTTCCGGTTGGATAGACAACATCTACGGACC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................................................................TTTTCGGTTGGAGAGACA.............	18	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_12875:2876578-2876727 +

52.44

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAA--AAGCTGCAACTTAA--ATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACA--ACCTATTCGGACC TCCGGTCTGCCGGCAGCCATAGTTAGGCCATCTATAGGTGAGTCCAGCTA---CCAACGAAACTTCCATTAAGAATCAACTATGTCCCATTCACAGTTTATGGCACACTGGAGCACCCCATGAAGGGCTGGGTGGGCAATGCCAATTCGGGGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................................................ATGAAGGCCTGGCTGGGCAATG............	22	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_13047:13858896-13859045 +

52.44

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAAC----------------TTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC CGCGATCTACCGATATGCATATTTCGACCAGGCATGAGTACGTGTTGTTG---GCGACTAAAGTTTCTTTAATACAGTTTTTGTTTCCTCGGCTTAAGTTCTTCCCAG----------CATTAGGGAGCCCTCCAAAGGATGGATTGATAACCTCTATGGACC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................................CTTG---GCAACTAAAGTTTC................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_13047:17044343-17044496 -

50.98

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG----------------CACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GCCGATCTACCCATATGCATATTTCGGCCAGGCATGAGTATGTGAGGATCGATAGCCAAGCTTCCTTTTGATAATATTTTTGTCTTCCTTTGGCTTAAGTTCTTC---------CCAGCTATAAGGAGCCATTTAAAGGATGCATTGACAACCTTTATGGACC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................TTTCGTTTGGCTTAAGTT..............................................................	18	4	15.00	3.25	0.00	0.00	11.00	0.75
..................................................................................TTTTCGTTTGGCTTAAGTT..............................................................	19	4	7.25	1.00	0.00	0.00	6.25	0.00
...................................................................................TTTCGTTTGGCTTAAGTTC.............................................................	19	4	3.25	0.25	0.00	0.00	3.00	0.00
..................................................................................TTTTCGTTTGGCTTAAGT...............................................................	18	4	3.25	0.75	0.00	0.00	2.50	0.00
................................................................................TTTCTTCGTTTGGCTTAAGTT..............................................................	21	4	2.50	1.25	0.00	0.00	1.25	0.00
..................................................................................TTTTCGTTTGGCTTAAGTTC.............................................................	20	4	2.00	0.00	0.00	0.00	2.00	0.00
....................................................................................TTCGTTTGGCTTAAGTTC.............................................................	18	4	1.75	0.00	0.00	0.00	1.75	0.00
..................................................................................TCTTCGTTTGGCTTAAGTT..............................................................	19	4	0.75	0.50	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAGT...............................................................	20	4	0.75	0.25	0.00	0.25	0.25	0.00
................................................................................TTTGTTCCTTTGGCTTAAGTT..............................................................	21	4	0.50	0.50	0.00	0.00	0.00	0.00
................................................................................TTTGTTCCTTTGGCTTAAGT...............................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
.................................................................................TTCTTCGTTTGGCTTAAGTT..............................................................	20	4	0.25	0.00	0.00	0.00	0.25	0.00
..............................................................................TTTGTxTTCGTTTGGCTTAAGTT..............................................................	22	4	0.25	0.25	0.00	0.00	0.00	0.00
..................................................................................TCTTCGTTTGGCTTAAGTTA.............................................................	20	4	0.25	0.00	0.00	0.00	0.25	0.00
..................................................................................TGTTCGTTTGGCTTAAGTTC.............................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
................................................................................TGTGTTCGTTTGGCTTAAGT...............................................................	20	4	0.25	0.00	0.25	0.00	0.00	0.00
................................................................................TTTGTTCCTTTGGCTTAAG................................................................	19	4	0.25	0.00	0.00	0.00	0.00	0.25
....................................................................................TTCGTTTGGCTTAAGTCC.............................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAGTTC.............................................................	22	4	0.25	0.00	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAG................................................................	19	4	0.25	0.00	0.00	0.00	0.25	0.00

scaffold_13047:17039011-17039164 -

50.98

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG----------------CACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GCCGATCTACCCATATGCATATTTCGGCCAGGCATGAGTATGTGAGGATCGATAGCCAAGCTTCCTTTTGATAATATTTTTGTCTTCCTTTGGCTTAAGTTCTTC---------CCAGCTATAAGGAGCCATTTAAAGGATGCATTGACAACCTTTATGGACC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................TTTCGTTTGGCTTAAGTT..............................................................	18	4	15.00	3.25	0.00	0.00	11.00	0.75
..................................................................................TTTTCGTTTGGCTTAAGTT..............................................................	19	4	7.25	1.00	0.00	0.00	6.25	0.00
...................................................................................TTTCGTTTGGCTTAAGTTC.............................................................	19	4	3.25	0.25	0.00	0.00	3.00	0.00
..................................................................................TTTTCGTTTGGCTTAAGT...............................................................	18	4	3.25	0.75	0.00	0.00	2.50	0.00
................................................................................TTTCTTCGTTTGGCTTAAGTT..............................................................	21	4	2.50	1.25	0.00	0.00	1.25	0.00
..................................................................................TTTTCGTTTGGCTTAAGTTC.............................................................	20	4	2.00	0.00	0.00	0.00	2.00	0.00
....................................................................................TTCGTTTGGCTTAAGTTC.............................................................	18	4	1.75	0.00	0.00	0.00	1.75	0.00
..................................................................................TCTTCGTTTGGCTTAAGTT..............................................................	19	4	0.75	0.50	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAGT...............................................................	20	4	0.75	0.25	0.00	0.25	0.25	0.00
................................................................................TTTGTTCCTTTGGCTTAAGTT..............................................................	21	4	0.50	0.50	0.00	0.00	0.00	0.00
................................................................................TTTGTTCCTTTGGCTTAAGT...............................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
.................................................................................TTCTTCGTTTGGCTTAAGTT..............................................................	20	4	0.25	0.00	0.00	0.00	0.25	0.00
..............................................................................TTTGTxTTCGTTTGGCTTAAGTT..............................................................	22	4	0.25	0.25	0.00	0.00	0.00	0.00
..................................................................................TCTTCGTTTGGCTTAAGTTA.............................................................	20	4	0.25	0.00	0.00	0.00	0.25	0.00
..................................................................................TGTTCGTTTGGCTTAAGTTC.............................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
................................................................................TGTGTTCGTTTGGCTTAAGT...............................................................	20	4	0.25	0.00	0.25	0.00	0.00	0.00
................................................................................TTTGTTCCTTTGGCTTAAG................................................................	19	4	0.25	0.00	0.00	0.00	0.00	0.25
....................................................................................TTCGTTTGGCTTAAGTCC.............................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAGTTC.............................................................	22	4	0.25	0.00	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAG................................................................	19	4	0.25	0.00	0.00	0.00	0.25	0.00

scaffold_12481:4543-4696 -

50.98

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG----------------CACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GCCGATCTACCCATATGCATATTTCGGCCAGGCATGAGTATGTGAGGATCGATAGCCAAGCTTCCTTTTGATAATATTTTTGTCTTCCTTTGGCTTAAGTTCTTC---------CCAGCTATAAGGAGCCATTTAAAGGATGCATTGACAACCTTTATGGACC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................TTTCGTTTGGCTTAAGTT..............................................................	18	4	15.00	3.25	0.00	0.00	11.00	0.75
..................................................................................TTTTCGTTTGGCTTAAGTT..............................................................	19	4	7.25	1.00	0.00	0.00	6.25	0.00
...................................................................................TTTCGTTTGGCTTAAGTTC.............................................................	19	4	3.25	0.25	0.00	0.00	3.00	0.00
..................................................................................TTTTCGTTTGGCTTAAGT...............................................................	18	4	3.25	0.75	0.00	0.00	2.50	0.00
................................................................................TTTCTTCGTTTGGCTTAAGTT..............................................................	21	4	2.50	1.25	0.00	0.00	1.25	0.00
..................................................................................TTTTCGTTTGGCTTAAGTTC.............................................................	20	4	2.00	0.00	0.00	0.00	2.00	0.00
....................................................................................TTCGTTTGGCTTAAGTTC.............................................................	18	4	1.75	0.00	0.00	0.00	1.75	0.00
..................................................................................TCTTCGTTTGGCTTAAGTT..............................................................	19	4	0.75	0.50	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAGT...............................................................	20	4	0.75	0.25	0.00	0.25	0.25	0.00
................................................................................TTTGTTCCTTTGGCTTAAGTT..............................................................	21	4	0.50	0.50	0.00	0.00	0.00	0.00
................................................................................TTTGTTCCTTTGGCTTAAGT...............................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
.................................................................................TTCTTCGTTTGGCTTAAGTT..............................................................	20	4	0.25	0.00	0.00	0.00	0.25	0.00
..............................................................................TTTGTxTTCGTTTGGCTTAAGTT..............................................................	22	4	0.25	0.25	0.00	0.00	0.00	0.00
..................................................................................TCTTCGTTTGGCTTAAGTTA.............................................................	20	4	0.25	0.00	0.00	0.00	0.25	0.00
..................................................................................TGTTCGTTTGGCTTAAGTTC.............................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
................................................................................TGTGTTCGTTTGGCTTAAGT...............................................................	20	4	0.25	0.00	0.25	0.00	0.00	0.00
................................................................................TTTGTTCCTTTGGCTTAAG................................................................	19	4	0.25	0.00	0.00	0.00	0.00	0.25
....................................................................................TTCGTTTGGCTTAAGTCC.............................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAGTTC.............................................................	22	4	0.25	0.00	0.00	0.00	0.25	0.00
................................................................................TTTCTTCGTTTGGCTTAAG................................................................	19	4	0.25	0.00	0.00	0.00	0.25	0.00

scaffold_12875:2847360-2847517 -

49.33

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTT-------------AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGAAATCTGCCCGTTGCCATTGTGAGGCCCTCAATCGGTAAGTCTGTCATA--GAAAGCAATGTTCTATAGTGTCAACTTTATATATGTATATATATTTTTATAGTGACTGCCAGCCTGAATGAACCCTTTGCCGGTTGGGTGGATAACTTCAATGGGCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................................CTGCCAGCCTGAATGAACCCT...............................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.................................................................................ATATCTGTATATATATCTT............................................................	19	14	0.07	0.00	0.00	0.07	0.00	0.00
..........................................................................................................................GAGCCATTTGCCGGTTGGGT..................	20	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_13047:18244950-18245105 -

48.83

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGG-GAATAACCTTCAAAAGCTG-------CAACTT-AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC CAGAAATTACCCGTTACCATATTTAGGCCGGGCATTGGTACGACTCTGCACTTGTTGAATTAACTTGCCCGACTAATTGCCTCATTTTGGGCTCTTTGTAGTGATCACCAGCTATCGAGAGCCGGTTACCGGCTGGATTGACAATATGTATGGACC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................................................TGGATTGAAAATCTGTATGGA..	21	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................................................CTCACTTCGGGCTCTTTG..........................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_13047:18500356-18500517 -

43.15

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCA--CCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAA------------ATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- AAAAAGCTGCCCATTATCGTCACAAGGCCTTCCATCGGTATGTAGGTCCCGCTAACTGGTTGGGCTTGACAAGTAACCATATTTATTTTTTTTTTTGTTCGCCCAGTGACGGCGGCCATACACGAGCCCATGCCCGGATGGATTGAGGGCGTGAACGGACCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................AATTTTTTTTTTTGGTCG.............................................................	18	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................................................................................TTTTTTTTTTTGTTGGCTC..........................................................	19	3	0.33	0.00	0.00	0.00	0.00	0.33
...........................................................................AACATGTTTATTTTTTTT.....................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
....................................................................................................................................CCCGGATGGATTGAGGGC............	18	1	1.00	0.00	0.00	0.00	1.00	0.00

scaffold_13049:18009313-18009477 +

42.92

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC---ACCAGATTGGGAATAACCTTCAAAAG-------------------CTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC AGCAAATTCCTGTTG-GTGTATTTCGTCCTGGCATTGGTATGTTTTTAATCAATTGTGGATTTGAATGCGAAACAAAACATATACATGTAGTTTTCCA---TTTTTGTTTACAGTGATTTCAACCTACCAGGATCCAGTTTGCGGGTGGATAGACAACTTTTATGGTCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................TATTTCGTCCTGGCATTG....................................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
..................GTATTTCGTCCTGGCATTG....................................................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................................................................................CAGTTTGCGGGTGGATAGA...............	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..............G-TTGTATTTCGTCCTGGCATTG....................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00

scaffold_12932:868372-868460 -

33.1

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCA---CCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GATCAGTTGCCAATTTTAATATACCGGCCCTCAATCGGTAGGTACAGCTCCAAACTGATCATGCGCTCTGTTTGGCACAATTTGAATCT-------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13049:11429505-11429574 -

32.41

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTTGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12932:867613-867671 -

26.21

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- -----------------------------------------------------------------------------------------CAGTGATCTCGACGATAGAGGAGCCCGTGCCCGGCTGGGCGGATAACTTTAATGGACCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............................................................................................................................GGCCGGCTAACTTTAATG.....	18	2	0.50	0.00	0.00	0.50	0.00	0.00

scaffold_12875:20453828-20453920 -

23.84

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAAC-CTATTCGGACC
AACGAGCTGCCGGCCGTCATTTTGCGTCCATCTATT-------------------------------------------------------GTCATACCCATTTGGAAGGAGCCCATACCCGGCTGGACGGACAATATTAATGGACCC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13049:11430445-11430488 -

17.24

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC TTTCATATACCCGCGGGCATATTTCGGCCGCCCATTGGTAAGTG-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.........................................TTG-------------------------------------------------------------------------------------------------------	21	9	0.11	0.11	0.00	0.00	0.00	0.00
..........................................TG-------------------------------------------------------------------------------------------------------	18	4	0.25	0.00	0.00	0.25	0.00	0.00
.........................................ATG-------------------------------------------------------------------------------------------------------	21	3	0.33	0.00	0.33	0.00	0.00	0.00
..........................................TG-------------------------------------------------------------------------------------------------------	18	14	0.07	0.00	0.07	0.00	0.00	0.00
.........................................GTG-------------------------------------------------------------------------------------------------------	21	9	0.11	0.11	0.00	0.00	0.00	0.00
..........................................TG-------------------------------------------------------------------------------------------------------	19	18	0.06	0.06	0.00	0.00	0.00	0.00
.........................................ATG-------------------------------------------------------------------------------------------------------	25	14	0.07	0.00	0.00	0.07	0.00	0.00
........................................CGTG-------------------------------------------------------------------------------------------------------	19	4	0.25	0.00	0.25	0.00	0.00	0.00
.........................................ATG-------------------------------------------------------------------------------------------------------	19	3	0.33	0.33	0.00	0.00	0.00	0.00
........................................AGTG-------------------------------------------------------------------------------------------------------	21	2	0.50	0.00	0.50	0.00	0.00	0.00
...........................................G-------------------------------------------------------------------------------------------------------	20	2	0.50	0.00	0.00	0.50	0.00	0.00
.........................................ATG-------------------------------------------------------------------------------------------------------	18	44	0.02	0.00	0.00	0.02	0.00	0.00
....................GTTTCGGCCGCCGATTGGT............................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................CG-------------------------------------------------------------------------------------------------------	20	18	0.06	0.00	0.06	0.00	0.00	0.00

scaffold_12928:5591682-5591725 -

15.45

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----CCTGCCGGTTATCGTCTATCGGCCCTCGATAGGTTTGTTTATC---------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6540:10933524-10933670 +

54.53

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATAT--------------TCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GCTGGTCTGCCCATATGCATCGTTCGGCCAAGCATTAGTAAGTGGA--------------ATGATCAAATGATCTAGGTTAAATATATATCAAATCATTTGCTCAGTTATTGGCAGCTATAAGGAGCCCGTCTCTGGCTGGGTTGACAATCTGTATGGTCC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6496:22335084-22335230 -

50.89

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTG--------CACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACA--ACCTATTCGGACC GCCGGTCTGCCGGCAGCCATAGTTAGGCCATCCATAGGTGAGTCGAAGTATAAATCTAATTGAGAAGG-CCCTAACTGACTGCTATTACAGTAT-------ACGGTACACTGG--AGCACCCCATGAAGGGCTGGGTGGGCAATGCCAACTCGGGTC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.............................................................................................................CTGG--AGCATCCAATGAAGG...........................	19	1	1.00	1.00	0.00	0.00	0.00
......................................................................................CATAGTAT-------ACGGTACACTGG--AGC.......................................	23	1	1.00	0.00	0.00	0.00	1.00

scaffold_6540:13479322-13479493 +

42.64

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCA--ACTTAAAT-------------------------ATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAGAAATTGCCCGTGACCATATTTCGGCCAGGCATTGGTAAGATGAGC--TTTGATAAAGAATTACGGCAGCTGTATGGCTTCTCTACTGCATTACGACTCCTGCTCTGCGCTTTTCAGTTATCACCAGCTATCGGGAGCCAGTGACTGGTTGGATTGACAATATGTACGGGCC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6680:23554265-23554435 +

41.16

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGC----------------------------AACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GGTATACTTCCTGTTGGCGTTTTTCGTCCTGGTATTGGTATGCTTCTTCA----TATATTTTTTATTAAAACTGTTATCATTTCCAACTATATACTGTTTATGATTTGATTTTTTGCTAGTAATATCGACATATCAAGAACCAGTGAGCGGCTGGATAGATAACTTTTATGGGCC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...........................................................................................GTACTGTTTxTGATTTGATT................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................CAGCGGCTGGATAGAAAAC...........	19	1	1.00	0.00	0.00	1.00	0.00

scaffold_6496:25430614-25430675 +

27.59

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-------------------------------------------------------------------------------------TTCTCAGTTGTCGCTAGTCATAAAGAGCCTATCACCGGGTGGATAGACAACCTGTACGGGCC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6473:689331-689388 +

27.59

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------------------CAGTCATCTCCACGCTGGAGGAGCCCGTGCCTGGCTGGGCGGACAATTTCAATGGACC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6496:5682764-5682856 +

24.27

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGAC-C
AGCGAATTGCCAGCTGTTATTTTGCGTCCATCGATT-------------------------------------------------------GTCATACCCATTTGGAAGGAGCCCATTCCTGGCTGGACAGACAATATCAATGGACCC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6473:688762-688815 +

22.34

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GATCGTCTGCCCATTCTTATATTCAGGCCATCAATCGGTAGGTG-ATCGGATTGG--------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6496:10759212-10759264 -

21.38

GGCAACC-TGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CGAAACCATGCCGGTCATCATAGCACGTCCCAGCATCGGTAAGTCCAGCCGCT-----------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6496:25430307-25430349 +

20.69

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GGAGACTTGCCGGTGTGCGTCTTTCGCCCAGCTGCCAGTAAGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6496:10754806-10754844 -

18.62

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15074:333824-333971 -

58.39

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCA----ACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AGCGGTTTGCCCATAAGCATCTTTCGCCCGGGTGTCAGTAAGTTCGTCGAATCATTAAGATCAGTAAGAAGATGTTCTCAGTCTCCA---TTTCAGTTATTGGCAGCTACAAGGACCCCCTCCCGGGCTGGGTTGACAATCTATATGGTCC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15245:323786-323930 -

52.63

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTG-----CAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC GACGATTTGCCGATCTGCATCTTTCGTCCCGGAGCAAGTAAGAAAGTAATAT-------GACTTCTATGCATTTCTTTTTAATTAACAAGTTATCAGTTGTTGCGACCAACAAGGAGCCAGTCTCTGGCTGGATTGATAATATTTATGGACC	Size	Hit Count	Total Norm	V109 Male body
.............................CGGAGCxAGTAAGAAAGAA........................................................................................................	18	1	1.00	1.00

scaffold_15110:24048341-24048508 +

45.16

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGT----------------------GCACCAGATTGGGAATAACCTTCAAAAGCTGCAAC---TTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GTCTTCCCGTCGGTGT----ATTCCGACCTGGCATTGGTAAGGTTTCACTTCACCTGAAAACTAGGTATCAAGTGGGAGGCAGGTTTGTGAAGTAGCATCCCATTAATTATACGCAGTGATTTCGACATACCAAGATCCAGTGTGCGGATGGATAGATAACTTTTACGGACC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15074:6442642-6442815 +

41.43

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAAC-----------------------------TTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
CAGAAATTGCCCGTTACCATATTTCGACCCGGCATCGGTAAGA--TACAACTTTTATACAACTTTCACTATGCCTGGCTACTTCATTTTGGGATTTGGGTATTTGTGTTCTATTTTTTTAGTGATCACCAGCTATCGTGAGCCGGTGACTGGCTGGATTGACAATATGTATGGACC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15245:16765680-16765775 +

33.72

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
A--TGCCGGTCATT----ATTGCCCGTCCGAGTATTGGTAAGTTTATTAATTGGATATCATTAGCCTTAAGCC--TGCTTAAATGCCATCTTCCATGTATACCT-------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

scaffold_15110:7920650-7920719 +

32.41

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
-----------------------------------------------------------------------------CTTATTTATTTGCAGTAATGTCAACGTACAAGGATCCATTTCCCGGCTGGACTGATAATTTGTACGGGCC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15074:6202133-6202321 +

30.14

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC--------ACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAA---------------------------------TATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC- AGAAAGCTGCCTGTAATCGTCACAAGGCCTTCCATTGGTATGTAGGTCCCCCCACCCCTGTGCCAGTATAAACTGGTTGCTGCAGTTGTGGTTACGTTGTTGGTAACACCCTTTTTGTTTTTTTTTTGTGCAGTGACGGCAGCCATAAGCGAGCCGCTGCCAGGATGGATCGAGGGCGTTAATGGGCCA	Size	Hit Count	Total Norm	V109 Male body
....................................................................................GTTGxGGTTAGGTTGTTGGT.....................................................................................	19	1	1.00	1.00

scaffold_15110:7919636-7919710 +

28.51

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TTTCACATGCCGGCTGGCATCTTTCGGCCACCCATCGGTAAGTGGGTGAG---TGCAATG--------------CAACACAAA-------------------------------------------------------AATTGCATC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15245:11093147-11093238 +

22.88

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
AAAGAGTTGCCCGCTGTCATACTGCGTCCGTCGATT-------------------------------------------------------GTCATACCCATTTGGAAGGAGCCGATACCCGGCTGGACGGATAATATAAATGGACC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15112:3288838-3288885 -

18.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
TCCGGTCTGCCGGCAGCCATCGTAAGGCCATCGATTGGTAAGTTTATC---------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

scaffold_14853:2034674-2034716 -

18.62

GGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACC
GATCAGCTGCCCATATTCATATTCAGACCATCAATCGGTGGGT--------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

Generated: 04/20/2012 at 05:47:35 EDT