dme-mir-2493- 12- and 20-way alignments

dme-mir-2493	chr3R:10956476-10956581 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 10956493-10956514
   star strand at position 10956539-10956559
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:10956461-10956596 -	TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACACAGCCATGTGCAT-----GG----AGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATTTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGCA------GAAGAGGAAGATGG
droSim1	chr3R:10501806-10501941 +	TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACACAGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATTTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGCA------GAAGAGGAAGATAG
droSec1	super_0:10986595-10986730 +	TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACACAGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATTTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGCA------GAAGAGGAAGATAG
droYak2	chr3R:15471091-15471226 +	TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACAGGGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATGTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGAA------GAAGAGGAAGATAA
droEre2	scaffold_4770:10485021-10485154 -	TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CAC--AGAGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCATGTGT------------ATGTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGAA------GAAGAGGAAGATAA
droAna3	scaffold_13340:6023187-6023339 -	TATAA------------TGTGTGTGTGTGTGTGTTTG----T-GCTATTATTAAAA---------CCC------------------------------------CCCTCGCAAGC--ACC---------------CC-CCACTGCCAC-TGCAT-----AG----AGCAA--AAAAAAAAAAAAAACTAT-------------AGTGGTGTGT------------G-GCAGGCGAGGCGTTGGCGTTT----T--GA-CCAAAA------GCTGAAGAAGAGGA
dp4	chr2:20937547-20937682 -	TATAA------------CGTGTGTGTGAGTGT----G----T-GCTATTATTAAAC---------TCC------------------------------------CTCCC--TAACACGCACACAACTATGTTATG------------------------------------------------TAAGTGT-------------GTGTGTGTGT------------GTGTGTGTGAGGCGTTGGCGTTT----T--GA-CCAGAAGCTGAAGAAGAGGAAGAATA
droPer1	super_3:3688114-3688249 -	TATAA------------CGTGTGTGTGAGTGT----G----T-GCTATTATTAAAC---------TCC------------------------------------CTCCC--TAACACGCATACAACTATGTTGTG--------------T-------------------------------------------------------ttGTGTGT----GTGTGTGTGTGTGTGTGAGGCGTTGGCGTTT----T--GA-CCAGAAGCTGAAGAAGAGGAAGAATA
droWil1	Unknown	CAAATGGTATGCGTCTATGTGTATGTGTG--TGCCTGTGTGTGGCTATTATTAAAAATCCACACCTCC------------------------------------TACCC--CAACCCCCCGACATCCATA---CGCCCACACATACACATACATGAAAAGA-------AAAGG--AAAAAAAAGAACTAT-------------------------------------------GAGGCGTTGGCGTTCGTTCCGGGCACTACAA---------GAAGAAGAAGA
droVir3	scaffold_13047:7645542-7645687 -	CATAT------------TGTACGTG------T----G----T-GCTATTATTAAAA---------TGC------------------------------------CACACGCACGC--ACA---------------CAT--AGAGACGGGGGGAC--AC-GGACACGGCAA-------AAAGAAAAACTATTCTCA--------GAGTGTGTGT------------GCGCCTACGAGGCGTTGGCGTTT----T--GG-CTAGAA------GAAGCAGCAG----
droMoj3	scaffold_6540:3604674-3604829 -	TATAT------------TGTATGTG------T----G----T-GCTATTATTAAAA---------TAC------------------------------------CACATGCACGC--ACA---------------CACAGAGAGGCAGAGACAC-----GGACACAGCAA-------AAAGAAAAACTATTTACAGTTGCTGCGACTGTGTGTATATACATATATGCGCCTACGAGGCGTTGGCGTTT----C--AG-CAAGCG--------------------
droGri2	scaffold_14830:3491578-3491759 -	TATAT------------TGTATGTG------T----G----T-GCTATTATTAAAA---------TGCgtgtgGgtgtgtgtgtgtgtgtTtTGgtgtgGTGCACTAACTCTGAG--GCA---------------CACAG----T------CATGGCAAAA-------AAAAAACAAAAAAGAAAACTATTCTCA------------GTGTAT----GTGTGTGTGTGCCTGCGAGGCGTTGGCGTTT----T--ACGCTAGAA------GAAGCAGCAG----

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:10956461-10956596 -	NA	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACGCT----CACACACACACACAG---------------------C---------------------------------------------------------------------CATGTGCATGGAGCA----------AAAAACTATGGCCGTGTGTATTTGTGCGAGGCGTTGGCGTTCTG-------ACCAGCAG------AAGAGGAAGATGG
droSim1	chr3R:10501806-10501941 +	1	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACGCT----CACACACACACACAG---------------------C---------------------------------------------------------------------CGTGTGCATGGGGCA----------AAAAACTATGGCCGTGTGTATTTGTGCGAGGCGTTGGCGTTCTG-------ACCAGCAG------AAGAGGAAGATAG
droSec1	super_0:10986595-10986730 +	1	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACGCT----CACACACACACACAG---------------------C---------------------------------------------------------------------CGTGTGCATGGGGCA----------AAAAACTATGGCCGTGTGTATTTGTGCGAGGCGTTGGCGTTCTG-------ACCAGCAG------AAGAGGAAGATAG
droYak2	chr3R:15471091-15471226 +	2	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACGCT----CACACACACACAGGG---------------------C---------------------------------------------------------------------CGTGTGCATGGGGCA----------AAAAACTATGGCCGTGTGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAGAAG------AAGAGGAAGATAA
droEre2	scaffold_4770:10485021-10485154 -	1	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACGCT----CACACACACAG--AG---------------------C---------------------------------------------------------------------CGTGTGCATGGGGCA----------AAAAACTATGGCCATGTGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAGAAG------AAGAGGAAGATAA
droEug1	scf7180000409794:36989-37146 +	1	TATA------------ATATGTGTG--------------TGT-GCTATTATTAAAACCCC-------------CAACGTT----CACACACACACAC-----------------------T----------------------------------CAT-----------ATACCCGTATGTATATGTATGTATGTGCATGGGGCA----------AAAAACTATGAACGTGTGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAAAAG------AAGAAGAACATAA
droBia1	scf7180000302402:3936102-3936224 -	2	TA---------------TGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAGCGCG------------TC-TC-------------------------------------------------------------------------------------------TGTGTGTGCATGGGGCA----------AAAAACTATGGCCGCATGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAGAAG------AAGAGGAAGATAA
droTak1	scf7180000415310:989048-989182 +	1	TATA------------ATGTGTGTG--------------TGT-GCTATTATTAAAACCCCC------------CAACGTT----CACACACACAC--AG---------------------C---------------------------------------------------------------------CATGTGCATGGGGCA----------AAAAACTATGGCCGTGTGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAGAAG------AAGAGGAAGATAA
droEle1	scf7180000486474:1021127-1021262 +	1	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACTCT----CACACATACATCTAT---------------------G---------------------------------------------------------------------TATGTGCATGGGGCA----------AAAAACTATGGCCGTGTGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAGAAG------AAGAGGAAGATAA
droRho1	scf7180000779540:26441-26580 -	4	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACGCT----CACACACACACACAC---------------------T-----------------------------------------------------------------CATTCGTGGGCATGGGGCA----------AAAAACTATGGCCGTGTGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAGAAG------AAGAGGAAAATAA
droFic1	scf7180000454104:401646-401781 +	1	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CAACATA----CACACACACACATTT---------------------T---------------------------------------------------------------------CATGTGCATGGGGCA----------AAAAACTATGGCCGTGTGTATGTGTGCGAGGCGTTGGCGTTCTG-------ACCAAAAG------AAGAGGAAGATAA
droKik1	scf7180000302706:1113377-1113522 +	1	TATA------------ATGTGTGTG--------------TGT-GCTATTATTAAAACCCC--------------ACCGCA----CACACACACACCCAG----CACA-----------------------------------------------------------------CC---------AAGCATGCATGTGAATGGGGCA----------A-AAACTATGCGAGTGTGTATGTGTGCGAGGCGTTGGCGTTTTG-------ACCAGAAG------CCGAAGAAGAGAA
droAna3	scaffold_13340:6023187-6023339 -	2	TATA------------ATGTGTGTGTGTGTGTGTT----TGT-GCTATTATTAAAACCCC-------------CCTCGCA----AGCACCCCC-CACTG---------------------C---------------------------------------------------------------------CAC-TGCATAGAGCAAAAAAAAAAAAAAAACTATAGTGGTGTGTG-GCAGGCGAGGCGTTGGCGTTTTG-------ACCAAAAG------CTGAAGAAGAGGA
droBip1	scf7180000396708:2786123-2786257 +	2	TATA------------ATGTGTGTG--------------TGC-GCTATTATTAAAACCCC-------------CCTCGCC----AGAACACCTC-CCTG---------------------C---------------------------------------------------------------------CCG--GCATACAGCAA--------AAAAAACTATGGTAGTGTGTGTGTTTGCGAGGCGTTGGCGTTTTG-------ACCAAAAG------CTGAAGAAGAGGA
dp4	chr2:20937547-20937682 -	2	TATA------------ACGTGTGTGTGAGTG--------TGT-GCTATTATTAAACTCCC-------------TCCC--T----AACACGCACAC--AA---------------------C----------------------------------TAT-----------GT-------------------TA------TG-----------------TAAGTGTGTGTGTGTGTGTGTGTGTGAGGCGTTGGCGTTTTG-------ACCAGAAGCTGAAGAAGAGGAAGAATA
droPer1	super_3:3688114-3688249 -	2	TATA------------ACGTGTGTGTGAGTG--------TGT-GCTATTATTAAACTCCC-------------TCCC--T----AACACGCATAC--AA---------------------C----------------------------------TAT-----------GT-------------------TG--TGT---------------------AAGTGTGTGTGTGTGTGTGTGTGTGAGGCGTTGGCGTTTTG-------ACCAGAAGCTGAAGAAGAGGAAGAATA
droWil1	scaffold_181130:7306738-7306938 +	4	CAAATGGTATGCGTCTATGTGTATGTGTGTG--CCTGTGTGTGGCTATTATTAAAAATCCACACCTCCTACCCCAACCCCCCGTTACATATACACACAACCAATACATCCATACGCCCACACATACACATA-------------------------------------------------------CA--TGAAAAGAAAAGGAA------AAAAAAGAACTA------------------TGAGGCGTTGGCGTTCGTTCCGGGCACTACAAG------A---AGAAGAAGA
droVir3	scaffold_13047:7645546-7645687 -	6	CATA------------TTGTACGTG--------------TGT-GCTATTATTAAAATGCC-------------ACACGCA----CGCACACATAGAGAC---------------------G----GGGGGACACGGACACGGCAAAAAGAAAAACTAT-----------TC-------------------T-------------------------------CAGAGTGTGTGTGCGCCTACGAGGCGTTGGCGTTTTG-------GCTAGAAG------AAGC--------A
droMoj3	scaffold_6540:3604660-3604829 -	18	TATA------------TTGTATGTG--------------TGT-GCTATTATTAAAATACC-------------ACATGCA----CGCACACACAGAGAG---------------------G----CAGAGACACGGACACAGCAAAAAGAAAAACTATTTACAGTTGCTGCGACTGTGTG-----------------------------------------TATATACATATATGCGCCTACGAGGCGTTGGCGTTTCA-------GCAAGCGA------GAGAGTGAGAGAG
droGri2	scaffold_15245:14649244-14649349 +	6	AACA------------A------------------------------------------G-------------CAACACA----CACACACACACACAC---------------------A---------------------------------------------------------------------CA--CACGCA-GACA----------AAGAAACACACACTCACATACATC-TTGATGTGTTCATATTTATG------CCAAGTCA------AACTCAAAAGCTT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACACAGCCATGTGCAT-----GG----AGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATTTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGCA------GAAGAGGAAGATGG

Size

Hit Count

Total Norm

droSim1

TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACACAGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATTTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGCA------GAAGAGGAAGATAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
................................................................................................................................................................................................................................................................A-CCAGCA------GCGGAGGAAGA...	18	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................CAC--ACA---------------CACACACxGCTGT........................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

droSec1

TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACACAGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATTTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGCA------GAAGAGGAAGATAG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.................TGTGTGTG------C----G----T-GxTATTAT.........................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00
............................................................................................................................................................................................................GCCGTGTGT------------GTATGTGCG..................................................	18	1	1.00	0.00	1.00	0.00
.............................................................................................................................................................................................................CCGTGTGT------------ATTTGTGCGAGGCG.............................................	22	1	1.00	1.00	0.00	0.00
...........................................................................................................ACACACAC--ACA---------------CACACACA.............................................................................................................................................	19	7	0.14	0.00	0.00	0.14

droYak2

TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CACACAGGGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCGTGTGT------------ATGTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGAA------GAAGAGGAAGATAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................................................................................................................................................................................................................................................TGGCGTTC----T--GA-CCAGAA------GAAGAGGAAG....	27	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................................................................................................................................................................................A--Gx-CAAGAA------GAAGAGGAAGA...	19	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

TATAA------------TGTGTGTG------T----G----C-GCTATTATTAAAA---------CCC------------------------------------CCAACGCTCAC--ACA---------------CAC--AGAGCCGTGTGCAT-----GG----GGCAA------------AAAACTAT-------------GGCCATGTGT------------ATGTGTGCGAGGCGTTGGCGTTC----T--GA-CCAGAA------GAAGAGGAAGATAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...............................................................................................................................................................................................................................................................CA-CCAGGA------GAAGAGGAAG....	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................................................................................................................ATGTGT------------ATGTGTGGGATG...............................................	18	1	1.00	0.00	0.00	0.00	1.00

droAna3

TATAA------------TGTGTGTGTGTGTGTGTTTG----T-GCTATTATTAAAA---------CCC------------------------------------CCCTCGCAAGC--ACC---------------CC-CCACTGCCAC-TGCAT-----AG----AGCAA--AAAAAAAAAAAAAACTAT-------------AGTGGTGTGT------------G-GCAGGCGAGGCGTTGGCGTTT----T--GA-CCAAAA------GCTGAAGAAGAGGA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...AG------------TGTGTGTGTGTGTGTG...........................................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
...................AGTGTGTGTGTGTGTGTG----...................................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.................AGTGTGTGTGTGTGTGTG.........................................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.....................AGTGTGTGTGTGTGTG----T-G................................................................................................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
....................GTGTGTGTGTGTGTGTG----T-.................................................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
..................GTGTGTGTGTGTGTGTGT........................................................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
....G------------TGTGTGTGTGTGTGTGT..........................................................................................................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
.................TGTGTGTGTGTGTGTGTGTG----T-G................................................................................................................................................................................................................................................	22	6	1.33	0.00	1.33	0.00	0.00
.................AGTGTGTGTGTGTGTGTGT........................................................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
...AG------------TGTGTGTGTGTGTGTGT..........................................................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
...................AGTGTGTGTGTGTGTGTG----T-.................................................................................................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
.....................TGTGTGTGTGTGTGTG----T-G................................................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
.................TGTGTGTGTGTGTGTGTG.........................................................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
...................TGTGTGTGTGTGTGTGTG----...................................................................................................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
....G------------TGTGTGTGTGTGTGTGTGTG----T-GC...............................................................................................................................................................................................................................................	24	6	1.17	0.17	1.00	0.00	0.00
...................TGTGTGTGTGTGTGTGTG----T-.................................................................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
..................GTGTGTGTGTGTGTGTGTG----T-G................................................................................................................................................................................................................................................	21	7	0.86	0.00	0.86	0.00	0.00
.................TGTGTGTGTGTGTGTGTGT........................................................................................................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
...................TGTGTGTGTGTGTGTGTG----T-G................................................................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
.................TGTGTGTGTGTGTGTGTGTG----...................................................................................................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
..................GTGTGTGTGTGTGTGTTG........................................................................................................................................................................................................................................................	18	7	0.71	0.00	0.71	0.00	0.00
.....................TGTGTGTGTGTGTGTG----T-GCA..............................................................................................................................................................................................................................................	20	7	0.57	0.00	0.57	0.00	0.00
....G------------TGTGTGTGTGTGTGTGC..........................................................................................................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
...AG------------TGTGTGTGTGTGTGTT...........................................................................................................................................................................................................................................................	18	8	0.38	0.00	0.38	0.00	0.00
...GG------------TGTGTGTGTGTGTGTGT..........................................................................................................................................................................................................................................................	19	13	0.23	0.08	0.15	0.00	0.00
..................GTGTGTGTGTGTGTGTGTG----T-.................................................................................................................................................................................................................................................	20	8	0.38	0.00	0.38	0.00	0.00
...................GGTGTGTGTGTGTGTGTG----T-.................................................................................................................................................................................................................................................	19	13	0.23	0.08	0.15	0.00	0.00
.....................TGTGTGTGTGTGTGTG----T-GC...............................................................................................................................................................................................................................................	19	14	0.21	0.00	0.21	0.00	0.00
.................GGTGTGTGTGTGTGTGTGT........................................................................................................................................................................................................................................................	19	13	0.23	0.08	0.15	0.00	0.00
.................TGTGTGTGTGTGTGTGTGC........................................................................................................................................................................................................................................................	19	14	0.21	0.00	0.21	0.00	0.00
.................TGTGTGTGTGTGTGTGTGTG----T-.................................................................................................................................................................................................................................................	21	7	0.43	0.00	0.29	0.14	0.00
.................TGTGTGTGTGTGTGGGTG.........................................................................................................................................................................................................................................................	18	18	0.17	0.00	0.17	0.00	0.00
.................TGTGTGTGTGTGTGTGTTGG----T-G................................................................................................................................................................................................................................................	22	6	0.50	0.00	0.50	0.00	0.00
.................AGTGTGTGTGTGTGTGTT.........................................................................................................................................................................................................................................................	18	8	0.38	0.00	0.38	0.00	0.00
..................GTGTGTGTGTGTTTGTGTG----T-GC...............................................................................................................................................................................................................................................	22	4	0.75	0.00	0.75	0.00	0.00
...................TGTGTGTGTGTGTGTGTG----C-.................................................................................................................................................................................................................................................	19	14	0.21	0.00	0.21	0.00	0.00
.................TGTGTGTGTGTGTGTGTT.........................................................................................................................................................................................................................................................	18	7	0.43	0.00	0.43	0.00	0.00
..................GTGTGTGTGTGTGTGTGC........................................................................................................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
.....................TGTGTGTGTGTGTGGG----T-G................................................................................................................................................................................................................................................	18	18	0.17	0.00	0.17	0.00	0.00
......................GTGTGTGTGTGTGTG----T-GC...............................................................................................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
....................GTGTGTGTGTGTGTGTG----C-.................................................................................................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
....A------------TGTGTGTGTGTCTGTGTGTG----...................................................................................................................................................................................................................................................	21	5	0.60	0.00	0.60	0.00	0.00
...................TGTGTGTGTGTGTGGGTG----...................................................................................................................................................................................................................................................	18	18	0.17	0.00	0.17	0.00	0.00

dp4

TATAA------------CGTGTGTGTGAGTGT----G----T-GCTATTATTAAAC---------TCC------------------------------------CTCCC--TAACACGCACACAACTATGTTATG------------------------------------------------TAAGTGT-------------GTGTGTGTGT------------GTGTGTGTGAGGCGTTGGCGTTT----T--GA-CCAGAAGCTGAAGAAGAGGAAGAATA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...........................................................................................................................................................................................TGT-------------GTGTGTGTGT------------GTGTGTGTGTG................................................	24	17	1.47	0.24	0.00	1.24	0.00
.........................................................................................................................................................................................TGTGT-------------GTGTGTGTGT------------GTGTGTGTG..................................................	24	17	1.47	0.24	0.00	1.24	0.00
..........................................................................................................................................................................................GTGT-------------GTGTGTGTGT------------GTGTGTGTGTG................................................	25	15	0.53	0.07	0.00	0.47	0.00
......................................................................................................................................G------------------------------------------------TACGTGT-------------GTGTGTGTGT------------GC.........................................................	20	2	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TG------------------------------------------------TAAGTGT-------------AAGTGTGTGT------------G..........................................................	20	1	7.00	5.00	0.00	2.00	0.00
..........................................................................................................................................................................................GTGT-------------GTGTGTGTGT------------GTGTGTGTG..................................................	23	20	0.30	0.00	0.00	0.30	0.00
............................................................................................................................................................................................GT-------------GTGTGTGTGT------------GTGTGTGTGTG................................................	23	20	0.30	0.00	0.00	0.30	0.00
............................................................................................................................................................................................GT-------------ACGTGTGTGT------------GTGTGT.....................................................	18	29	0.17	0.00	0.17	0.00	0.00
...........................................................................................................................................................................................................GTACGTGTGT------------GTGTGTGTG..................................................	19	26	0.19	0.08	0.08	0.04	0.00
......................................................................................................................................G------------------------------------------------TACGTGT-------------GTGTGTGTGT------------G..........................................................	19	26	0.19	0.08	0.08	0.04	0.00
..........................................................................................................................................................................................GTAC-------------GTGTGTGTGT------------GTGT.......................................................	18	29	0.17	0.00	0.17	0.00	0.00
...........................................................................................................................................................................................................GTACGTGTGT------------GTGTGTGT...................................................	18	29	0.17	0.00	0.17	0.00	0.00
..........................................................................................................................................................................................GTAC-------------GTGTGTGTGT------------GTGTG......................................................	19	26	0.19	0.08	0.08	0.04	0.00
.................................................................................................................................TTTATG------------------------------------------------TGAGTGT-------------GTGTGTG..........................................................................	20	1	5.00	5.00	0.00	0.00	0.00
......................................................................................................................................G------------------------------------------------TACGTGT-------------GTGTGTGTGT------------...........................................................	18	29	0.17	0.00	0.17	0.00	0.00
............................................................................................................................................................................................GT-------------ACGTGTGTGT------------GTGTGTG....................................................	19	26	0.19	0.08	0.08	0.04	0.00
..............................GT----G----T-GCTTTTATTAGAC---------T..........................................................................................................................................................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
...........................................................................................................................................................................................TGT-------------GTGTGTGTGT------------GTGTGTGTG..................................................	22	21	0.19	0.00	0.00	0.19	0.00
.............................................................................................................................................................................................T-------------GTGTGTGTGT------------GTGTGTGTGTG................................................	22	21	0.19	0.00	0.00	0.19	0.00
.........................................................................................................................................................................................TGTGT-------------GTGTGTGTGT------------GTGTGTG....................................................	22	21	0.19	0.00	0.00	0.19	0.00
.....................................................................................................................................TG------------------------------------------------TAAGTGT-------------AAGTGTGTGT------------...........................................................	19	1	3.00	2.00	0.00	1.00	0.00
..........................................................................................................................................................................................GTGT-------------GTGTGTGTGT------------GTGTGTGTGTGG...............................................	26	13	0.23	0.15	0.00	0.08	0.00
..............................................................................................................................................................................................................TTTGTGT------------GTGTGTGTGTG................................................	18	37	0.08	0.03	0.03	0.03	0.00
...........................................................................................................................................................................................TGT-------------GTGTGTGTGT------------GTGTGT.....................................................	19	27	0.11	0.04	0.00	0.07	0.00
.........................................................................................................................................................................................TGTGT-------------GTGTGTGTGT------------GTGT.......................................................	19	27	0.11	0.04	0.00	0.07	0.00
...........................................................................................................................................................................................TGT-------------CTGTGTGTGT------------ATGTGTG....................................................	20	20	0.15	0.15	0.00	0.00	0.00
...........................................................................................................................................................................................TTT-------------GTGTGTGTGT------------GTGTG......................................................	18	37	0.08	0.03	0.03	0.03	0.00
........................................................................................................................................................................................AAGTGT-------------CTGTCTGTGT------------GTGT.......................................................	20	1	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................TG------------------------------------------------TAAGTGT-------------AAGTGTGTGT------------GT.........................................................	21	1	3.00	2.00	1.00	0.00	0.00
.............................................................................................................................................................................................T-------------TTGTGTGTGT------------GTGTGTG....................................................	18	37	0.08	0.03	0.03	0.03	0.00
.....................................................................................................................................TG------------------------------------------------TAAGTGT-------------GAGTGTGTGT------------...........................................................	19	1	3.00	1.00	0.00	2.00	0.00
.............................................................................................................................................................................................T-------------GTCTGTGTGT------------GTATGTGTG..................................................	20	20	0.15	0.15	0.00	0.00	0.00
............................................................................................................................................................................................................TGTGTGTGT------------GTGTGTGTGT.................................................	19	27	0.11	0.04	0.00	0.07	0.00
.........................................................................................................................................................................................TTTGT-------------GTGTGTGTGT------------GTG........................................................	18	37	0.08	0.03	0.03	0.03	0.00
......................................................................................................................................G------------------------------------------------TACGTGT-------------GTGTGTGTGT------------GCG........................................................	21	1	3.00	0.00	2.00	1.00	0.00
.......................................................................................................................................................................................TTTGTGT-------------GTGTGTGTGT------------G..........................................................	18	37	0.08	0.03	0.03	0.03	0.00
.............................................................................................................................................................................................T-------------GTGTGTGTGT------------GTGTGTGT...................................................	19	27	0.11	0.04	0.00	0.07	0.00
............................................................................................................................................................................................................TTTGTGTGT------------GTGTGTGTG..................................................	18	37	0.08	0.03	0.03	0.03	0.00

droPer1

TATAA------------CGTGTGTGTGAGTGT----G----T-GCTATTATTAAAC---------TCC------------------------------------CTCCC--TAACACGCATACAACTATGTTGTG--------------T-------------------------------------------------------ttGTGTGT----GTGTGTGTGTGTGTGTGAGGCGTTGGCGTTT----T--GA-CCAGAAGCTGAAGAAGAGGAAGAATA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................................................TG--------------T-------------------------------------------------------TTGTTTGT----GTGTGTGTGT.........................................................	21	18	1.44	0.89	0.06	0.28	0.22	0.00
..............................................................................................................................................................................................................TGTTTGT----TTGTGTGTGTGTGT.....................................................	21	18	1.44	0.89	0.06	0.28	0.22	0.00
................................................................................................................................................................................................................TGTTT----GTTTGTGTGTGTGTGT...................................................	21	18	1.44	0.89	0.06	0.28	0.22	0.00
......................................................................................................................................G--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTGT.........................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GTGTGTGTGTGTGTGTGT.................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGTGT----GTGTGTGTGTGTGT.....................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
.............................................................................................................................................................................................................GTGTGTGT----GTGTGTGTGTGT.......................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGT----GTGTGTGTGTGTGTGT...................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
....................................................................................................................................GTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGT...........................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GCGTGTGTGTGTGTGTGC.................................................	20	26	0.46	0.12	0.35	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGC----GTGTGTGTGTGTGTGC...................................................	20	26	0.46	0.12	0.35	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGCGT----GTGTGTGTGTGTGC.....................................................	20	26	0.46	0.12	0.35	0.00	0.00	0.00
....................................................................................................................................GTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTG..........................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGTGT----GTGTGTGTGTGTGTG....................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
.............................................................................................................................................................................................................GTGTGTGT----GTGTGTGTGT.........................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
.........................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGT.................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
......................................................................................................................................G--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGT...........................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGT----GTGTGTGTGTGTGT.....................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GTGTGTGTGTGTGTGTGTG................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
......................................................................................................................................G--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTG........................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGTGT----GTGTGTGTGTGT.......................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
....................................................................................................................................GTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGT.............................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
.............................................................................................................................................................................................................GTGTGTGT----GTGTGTGTGTGTG......................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGT----GTGTGTGTGTGTGTGTG..................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GTGTGTGTGTGTGTGT...................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GCGTGTGTGTGTGTGT...................................................	18	26	0.31	0.04	0.27	0.00	0.00	0.00
.............................................................................................................................................................................................................GTGCGTGT----GTGTGTGTGTG........................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GCGTGTGTGTGTGTGTG..................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGCGT----GTGTGTGTGTGTG......................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGC----GTGTGTGTGTGTGT.....................................................	18	26	0.31	0.04	0.27	0.00	0.00	0.00
......................................................................................................................................G--------------T-------------------------------------------------------GCGTGTGT----GTGTGTGTG..........................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGC----GTGTGTGTGTGTGTG....................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
....................................................................................................................................GTG--------------C-------------------------------------------------------GTGTGTGT----GTGTGTG............................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGCGT----GTGTGTGTGTGT.......................................................	18	26	0.31	0.04	0.27	0.00	0.00	0.00
.........................................................................................................................................................................................................................GTGCGTGTGTGTGTGTGTG................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
....................................................................................................................................................................................................................T----GTGTGTGTGTGTGTGTG..................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
................................................................................................................................................................................................................TGTGT----GTGTGTGTGTGTGTGT...................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
.....................................................................................................................................TG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTGT.........................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
.....................................................................................................................................TG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTG..........................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
...................................................................................................................................TGTG--------------T-------------------------------------------------------GTGTGTGT----GTGTG..............................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
..............................................................................................................................................................................................................TGTGTGT----GTGTGTGTGTG........................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
.....................................................................................................................................TG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTG............................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
....................................................................................................................................................................................................................T----GTGTGTGTGTGTGTGTGTG................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
................................................................................................................................................................................................................TGTGT----GTGTGTGTGTGTG......................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
..............................................................................................................................................................................................................TGTTTGT----TTGTGTGTGTGTG......................................................	20	23	0.30	0.17	0.04	0.00	0.09	0.00
..................................................................................................................................................................................................................TGT----GTGTGTGTGTGTGTGTG..................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
...................................................................................................................................TGTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTG............................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
.....................................................................................................................................................T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTG........................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
..............................................................................................................................................................................................................TGTGTGT----GTGTGTGTGTGTGT.....................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
..................................................................................................................................................................................................................TGT----TTGTTTGTGTGTGTGTG..................................................	20	23	0.30	0.17	0.04	0.00	0.09	0.00
.....................................................................................................................................................T-------------------------------------------------------GTGTGTGT----GTGTGTGTG..........................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
................................................................................................................................................................................................................TGTTT----GTTTGTGTGTGTGTG....................................................	20	23	0.30	0.17	0.04	0.00	0.09	0.00
..................................................................................................................................................................................................................TGT----GTGTGTGTGTGTGTG....................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
..........................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTG................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
..................................................................................................................................................................................................................TGT----GTGTGTGTGTGTGTGTGT.................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
................................................................................................................................................................................................................TGTGT----GTGTGTGTGTGTGTG....................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
...................................................................................................................................TGTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGT...........................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
..............................................................................................................................................................................................................TGTGTGT----GTGTGTGTGTGTG......................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
.....................................................................................................................................TG--------------T-------------------------------------------------------TTGTTTGT----GTGTGTGTG..........................................................	20	23	0.30	0.17	0.04	0.00	0.09	0.00
.....................................................................................................................................................T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTGT.......................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
................................................................................................................................................................................................................TGTGT----GTGTGTGTGTGTGTGTGTG................................................	24	20	0.25	0.15	0.00	0.05	0.05	0.00
...................................................................................................................................................................................................................GT----GCGTGTGTGTGTGTGTGCG................................................	21	23	0.22	0.17	0.04	0.00	0.00	0.00
....................................................................................................................................................................................................................T----GTGTGTGTGTGTGTGTGT.................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
.....................................................................................................................................................T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTGTGTG....................................................	24	20	0.25	0.15	0.00	0.05	0.05	0.00
.....................................................................................................................................TG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTGTG......................................................	24	20	0.25	0.15	0.00	0.05	0.05	0.00
..............................................................................................................................................................................................................TGTGTGT----GTGTGTGTGTGT.......................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
.....................................................................................................................................TG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGT...........................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
..............................................................................................................................................................................................................TGTGTGT----GTGTGTGTGTGTGTGTG..................................................	24	20	0.25	0.15	0.00	0.05	0.05	0.00
...................................................................................................................................TGTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTG........................................................	24	20	0.25	0.15	0.00	0.05	0.05	0.00
...............................................................................................................................................................................................................GTGCGT----GTGTGTGTGTGTGCG....................................................	21	23	0.22	0.17	0.04	0.00	0.00	0.00
..................................................................................................................................................................................................................TGT----GTGTGTGTGTGTGTGT...................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
...................................................................................................................................TGTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGT.............................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
.....................................................................................................................................................T-------------------------------------------------------GTGTGTGT----GTGTGTGTGT.........................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
................................................................................................................................................................................................................TGTGT----GTGTGTGTGTGTGT.....................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGC----GTGTGTGTGTGTGTGCG..................................................	21	23	0.22	0.17	0.04	0.00	0.00	0.00
................................................................................................................................................................................................................TGTGT----GTGTGTGTxTGTCTGT...................................................	20	55	0.07	0.07	0.00	0.00	0.00	0.00
..............................................................................................................................................................................................................TGTGTGT----GTGTGTxTGTCTGT.....................................................	20	55	0.07	0.07	0.00	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGTGT----GTGTGTGxGTGTGTGTC..................................................	22	35	0.11	0.11	0.00	0.00	0.00	0.00
................................................................................................................................................................................................................TGTGT----GTGTGTGTGTGTGTGTG..................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
...................................................................................................................................TGTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTG..........................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
.....................................................................................................................................TG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTG........................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
.....................................................................................................................................................T-------------------------------------------------------GTGTGTGT----GTGTGTGTGTGTG......................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
..................................................................................................................................................................................................................TGT----GTGTGTGTGTGTGTGTGTG................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
..............................................................................................................................................................................................................TGTGTGT----GTGTGTGTGTGTGTG....................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
......................................................................................................................................G--------------T-------------------------------------------------------ATGTGTAT----GTGTGTGT...........................................................	18	27	0.11	0.04	0.00	0.00	0.00	0.07
....................................................................................................................................GTG--------------T-------------------------------------------------------GTGTGTGT----GTGTGTGAGT.........................................................	22	30	0.10	0.10	0.00	0.00	0.00	0.00
...............................................................................................................................................................................................................GTTTGT----TTGTGTGTGTGTGT.....................................................	20	22	0.14	0.14	0.00	0.00	0.00	0.00
.................................................................................................................................................................................................................GTAT----CTGTGTGTGTGTGT.....................................................	18	28	0.11	0.11	0.00	0.00	0.00	0.00
....................................................................................................................................GTA--------------T-------------------------------------------------------CTGTGTGT----GTGTGT.............................................................	18	28	0.11	0.11	0.00	0.00	0.00	0.00
................................................................................................................................................................................................................GGTGT----GTGTGTGTGTGTGT.....................................................	19	24	0.13	0.13	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GTGTGTGTGTGTGTGTGAGT...............................................	22	30	0.10	0.10	0.00	0.00	0.00	0.00
...............................................................................................................................................................................................................GTGTGT----GTGTGTGTATGTGT.....................................................	20	32	0.09	0.09	0.00	0.00	0.00	0.00
......................................................................................................................................G--------------T-------------------------------------------------------GTGTGTGT----GTGTATGTGT.........................................................	20	32	0.09	0.09	0.00	0.00	0.00	0.00
.............................................................................................................................................................................................................GTGTGTGT----GTGTGTGTGTGAGT.....................................................	22	30	0.10	0.10	0.00	0.00	0.00	0.00
..................GTGTGTGTGTGTGT----G----C-GCT..............................................................................................................................................................................................................................................	19	4	0.75	0.50	0.00	0.25	0.00	0.00
.............................................................................................................................................................................................................GTGTGTGT----GTGTGTATGTGT.......................................................	20	32	0.09	0.09	0.00	0.00	0.00	0.00
..............................................................................................................................................................................................................GGTGTGT----GTGTGTGTGTGT.......................................................	19	24	0.13	0.13	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----GTGTGTGTTTGTGTGTA..................................................	19	27	0.11	0.11	0.00	0.00	0.00	0.00
.................................................................................................................................................................................................................GTGT----GTGTGTGTGTATGTGT...................................................	20	32	0.09	0.09	0.00	0.00	0.00	0.00
...................................................................................................................................................................................................................GT----ATCTGTGTGTGTGTGT...................................................	18	28	0.11	0.11	0.00	0.00	0.00	0.00
......................................................................................................................................G--------------T-------------------------------------------------------TTGTTTGT----GTGTGTGTGT.........................................................	20	22	0.14	0.14	0.00	0.00	0.00	0.00

droWil1

CAAATGGTATGCGTCTATGTGTATGTGTG--TGCCTGTGTGTGGCTATTATTAAAAATCCACACCTCC------------------------------------TACCC--CAACCCCCCGACATCCATA---CGCCCACACATACACATACATGAAAAGA-------AAAGG--AAAAAAAAGAACTAT-------------------------------------------GAGGCGTTGGCGTTCGTTCCGGGCACTACAA---------GAAGAAGAAGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................TGTGTG--CGTCTGTGTGTG.................................................................................................................................................................................................................................................	18	16	1.19	0.00	0.94	0.25	0.00
.................TGTGTATGTGTG--TGTGTGTGTG...................................................................................................................................................................................................................................................	22	24	0.42	0.00	0.00	0.42	0.00
..................GTGTTTGTGTG--TGCGTGT......................................................................................................................................................................................................................................................	18	21	0.48	0.10	0.33	0.05	0.00
.....................TATGTGTG--TGTGTGTGTGTG.................................................................................................................................................................................................................................................	20	38	0.24	0.00	0.00	0.24	0.00
.................TGTGTATGTGTG--TGTGTGTG.....................................................................................................................................................................................................................................................	20	33	0.24	0.00	0.03	0.21	0.00
.................TGTGTATGTGTG--TGTGTGTGT....................................................................................................................................................................................................................................................	21	29	0.21	0.00	0.07	0.14	0.00
.....................TATGTGTG--TGTGTGTGTG...................................................................................................................................................................................................................................................	18	49	0.10	0.00	0.02	0.08	0.00
.........TGCGTATATGTGTGTGTGTG--.............................................................................................................................................................................................................................................................	20	2	2.50	0.00	2.50	0.00	0.00
.........TGCGTCTGTGTGTGTGTGT................................................................................................................................................................................................................................................................	19	17	0.29	0.00	0.29	0.00	0.00
...................TGTATGTGTG--TGTGTGTGTG...................................................................................................................................................................................................................................................	20	35	0.11	0.00	0.09	0.03	0.00
...................TGTATGTGTG--TGTGTGTG.....................................................................................................................................................................................................................................................	18	44	0.09	0.00	0.00	0.09	0.00
.................TGTGTATGTGTG--TGTGTG.......................................................................................................................................................................................................................................................	18	41	0.10	0.00	0.00	0.10	0.00
.................................................................................................................................................................................................................................................................AATAGAA---------GAAGAAGAAGA	18	1	4.00	0.00	4.00	0.00	0.00
.............TGTATGTGTGTGTGTG--TG...........................................................................................................................................................................................................................................................	18	44	0.09	0.00	0.00	0.09	0.00
......................GTGCGTG--TGCCTGTGTGT..................................................................................................................................................................................................................................................	18	2	1.50	0.00	1.50	0.00	0.00
.....................TATGTGTG--TGTGTGTGTGT..................................................................................................................................................................................................................................................	19	43	0.07	0.00	0.02	0.05	0.00
.........TGCGTATATGTGTGTGTGTG--T............................................................................................................................................................................................................................................................	21	2	1.50	0.00	1.50	0.00	0.00
....................GTATGTGTG--TGTGTGTGT....................................................................................................................................................................................................................................................	18	46	0.07	0.02	0.02	0.02	0.00
..............................................................................................................................................................GAA-------AAAGG--AAAAAAAAGA...................................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
..................ATGxxTGCGTG--TGCCTGTGT....................................................................................................................................................................................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
..................GTGTGTGTGTT--TGCCTGTGT....................................................................................................................................................................................................................................................	20	2	1.50	0.00	1.50	0.00	0.00
............GTGTTTGTGTATGTGTG--T............................................................................................................................................................................................................................................................	18	18	0.17	0.06	0.11	0.00	0.00

droVir3

CATAT------------TGTACGTG------T----G----T-GCTATTATTAAAA---------TGC------------------------------------CACACGCACGC--ACA---------------CAT--AGAGACGGGGGGAC--AC-GGACACGGCAA-------AAAGAAAAACTATTCTCA--------GAGTGTGTGT------------GCGCCTACGAGGCGTTGGCGTTT----T--GG-CTAGAA------GAAGCAGCAG----	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................................................................................GGCAA-------AAAGAACAACCAT..............................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

droMoj3

TATAT------------TGTATGTG------T----G----T-GCTATTATTAAAA---------TAC------------------------------------CACATGCACGC--ACA---------------CACAGAGAGGCAGAGACAC-----GGACACAGCAA-------AAAGAAAAACTATTTACAGTTGCTGCGACTGTGTGTATATACATATATGCGCCTACGAGGCGTTGGCGTTT----C--AG-CAAGCG--------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................................................................................................CACACAGAGGGAGAGACA...................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................CACATACACGC--ACA---------------CACACA...............................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50

droGri2

TATAT------------TGTATGTG------T----G----T-GCTATTATTAAAA---------TGCgtgtgGgtgtgtgtgtgtgtgtTtTGgtgtgGTGCACTAACTCTGAG--GCA---------------CACAG----T------CATGGCAAAA-------AAAAAACAAAAAAGAAAACTATTCTCA------------GTGTAT----GTGTGTGTGTGCCTGCGAGGCGTTGGCGTTT----T--ACGCTAGAA------GAAGCAGCAG----	Size	Hit Count	Total Norm	V109 Male body
................................................................................GTGCGTGTGTTATGGTGTG.........................................................................................................................................................................................	19	1	7.00	7.00
...............................................................................TGTGTGTGTGTTTGTGTGT..........................................................................................................................................................................................	19	41	0.07	0.07
.....................................................................TGTGTGTGTGTTTGTGTGT....................................................................................................................................................................................................	19	41	0.07	0.07
.......................................................................TGTGTGTGTGTTTGTGTGT..................................................................................................................................................................................................	19	41	0.07	0.07

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image