Possible Orthologs for dme-mir-2281

droSim1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr3R:11233896-11234028 +	95.53	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG GCCAGTGCATCCTACGGATGTCGAGCAGTACCCGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCGTATCCATGTGACGCGTCGCG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ................................................................ATGTATCTGTATCTGAACC.................................................. 19 2 2.00 0.00 0.00 2.00 0.00 ...........................................................TGTATCTGTATCTGTATCTCT..................................................... 21 6 0.50 0.17 0.33 0.00 0.00 ..............................................................ATCCGTATCTGTATCTGTATC.................................................. 21 3 1.00 0.00 1.00 0.00 0.00 .................................................................TGTATCTGTATCTGTATCTCT............................................... 21 6 0.50 0.17 0.33 0.00 0.00 ..........................................................CTGTATCTGTATCTGTATCT....................................................... 20 6 0.33 0.00 0.00 0.00 0.33 ...................................................................TATCTGAATCTGTATCTGA............................................... 19 2 1.00 0.00 1.00 0.00 0.00 .......................................................................TGTATCTGTATCTGCATC............................................ 18 9 0.22 0.00 0.00 0.00 0.22 ..............................................................CTGTGTATCTGTATCTGTATC.................................................. 21 2 1.00 0.00 0.00 0.00 1.00 ..................................................................GTATCTGCATCGGTATCTGC............................................... 20 2 1.00 0.00 0.00 1.00 0.00 ..............................................................ATCTGTATCTGTATCTGT..................................................... 18 8 0.25 0.00 0.00 0.00 0.25 ................................................................ATGTATCTGTATCTGAAC................................................... 18 3 0.67 0.00 0.00 0.67 0.00 ................................................................CTGTATCTGTATCTGTATCT................................................. 20 6 0.33 0.00 0.00 0.00 0.33 ....................................................................ATCTGTATCTGTATCTGT............................................... 18 8 0.25 0.00 0.00 0.00 0.25 ...........................................................TGTATCTGTATCTGCATC........................................................ 18 9 0.22 0.00 0.00 0.00 0.22 .................................................................TGTATCTGTATCTGCATC.................................................. 18 9 0.22 0.00 0.00 0.00 0.22 ..................................................................GTATCTGTATCTGTATCC................................................. 18 6 0.17 0.00 0.00 0.00 0.17 ................................................................CTGTATCTGTATCTGTAC................................................... 18 6 0.17 0.00 0.00 0.00 0.17 ...............................................................AACGTATCTGTATCTGTA.................................................... 18 5 0.20 0.00 0.00 0.00 0.20 ....................................................................ATTTGTATCTGCATCTGC............................................... 18 4 0.25 0.00 0.00 0.00 0.25 ............................................................GTATCTGTATCTGTATCTGTA.................................................... 21 6 0.17 0.00 0.17 0.00 0.00 ...........................................................TGTATCTGTATCTGTATC........................................................ 18 6 0.17 0.00 0.17 0.00 0.00 ..................................................................GTATCTGTATCTGTATCTGTA.............................................. 21 6 0.17 0.00 0.17 0.00 0.00 ....................................................................ATCTGTATCTGTATCTGTA.............................................. 19 8 0.13 0.00 0.00 0.00 0.13 .....................................................................TCTGAATCTGTATCTGCC.............................................. 18 2 0.50 0.00 0.50 0.00 0.00 ............................................................GTATCTGTATCTGTATCTGTATCT................................................. 24 3 0.33 0.00 0.00 0.00 0.33 ................................................................CTGTATCTGTATCTGCAT................................................... 18 6 0.17 0.00 0.00 0.00 0.17 ..........................................................GTxTTTATGTATCTGTATCTG...................................................... 20 2 0.50 0.50 0.00 0.00 0.00 .......................................................CAAATGTATCTGTATCTGA........................................................... 19 3 0.33 0.00 0.00 0.00 0.33 .................................................................TGTATCTGTATCTGTATC.................................................. 18 6 0.17 0.00 0.17 0.00 0.00 .................................................................TGTATCTTTATCTGTATCTG................................................ 20 5 0.20 0.00 0.00 0.20 0.00 ...............................................................TATCTATCTGTATCTGAATC.................................................. 20 2 0.50 0.00 0.00 0.50 0.00 .........................................................AACGTATCTGTATCTGTA.......................................................... 18 5 0.20 0.00 0.00 0.00 0.20 ...........................................................TGTATCTTTATCTGTATCTG...................................................... 20 5 0.20 0.00 0.00 0.20 0.00 ..............................................................ATCTGTATCTGTATCTGTATCTG................................................ 23 3 0.33 0.00 0.00 0.33 0.00 .............................................................TATCTGTATCTGTATCTGTATT.................................................. 22 5 0.20 0.00 0.00 0.00 0.20 ......................................................................CTGTATCTGTATCTGTAC............................................. 18 6 0.17 0.00 0.00 0.00 0.17 ..............................................................ATTTGTATCTGTATCTGTATC.................................................. 21 3 0.33 0.00 0.33 0.00 0.00 ............................................................GTATCTGTATCTGTATCC....................................................... 18 6 0.17 0.00 0.00 0.00 0.17 ..............................................................ATCTGTATCTGTATCTGTATCC................................................. 22 3 0.33 0.00 0.33 0.00 0.00 .................................................................TGCATTTGTATCTGTATCTGC............................................... 21 2 0.50 0.00 0.00 0.00 0.50 ...............................................................TCAGTATCTGTATCTGTATCT................................................. 21 3 0.33 0.00 0.33 0.00 0.00 ..........................................................CTGTATCTGTATCTGTATCTGTATC.................................................. 25 3 0.33 0.00 0.00 0.00 0.33 .................................................................TGTATCTGTATCTGTATCTCC............................................... 21 2 0.50 0.00 0.50 0.00 0.00 ...............................................................TCTTTATCTGTATCTGTATCT................................................. 21 3 0.33 0.00 0.00 0.00 0.33 ...................................................................TATCTGTATCTGTATCTGTATT............................................ 22 5 0.20 0.00 0.00 0.00 0.20 ......................................................................CTGTATCTGTATCTGCAT............................................. 18 6 0.17 0.00 0.00 0.00 0.17 ..............................................................ATCTGTATCTGTATCTGTA.................................................... 19 8 0.13 0.00 0.00 0.00 0.13 ..............................................................ATCTGTATCTGTATCTGAATCT................................................. 22 3 0.33 0.33 0.00 0.00 0.00 ..................................................................GTATCTTTATCTGTAGCT................................................. 18 2 0.50 0.00 0.00 0.50 0.00
2	chr3R:11233934-11234023 +	45.55	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG --------------------------------------ATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCGTATCCATGTGACGCG----- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ................................................................ATGTATCTGTATCTGAACC.................................................. 19 2 2.00 0.00 0.00 2.00 0.00 .................................................................TGTATCTGTATCTGTATCTCT............................................... 21 6 0.50 0.17 0.33 0.00 0.00 ...........................................................TGTATCTGTATCTGTATCTCT..................................................... 21 6 0.50 0.17 0.33 0.00 0.00 ..............................................................ATCCGTATCTGTATCTGTATC.................................................. 21 3 1.00 0.00 1.00 0.00 0.00 ..............................................................CTGTGTATCTGTATCTGTATC.................................................. 21 2 1.00 0.00 0.00 0.00 1.00 ................................................................CTGTATCTGTATCTGTATCT................................................. 20 6 0.33 0.00 0.00 0.00 0.33 .......................................................................TGTATCTGTATCTGCATC............................................ 18 9 0.22 0.00 0.00 0.00 0.22 ..........................................................CTGTATCTGTATCTGTATCT....................................................... 20 6 0.33 0.00 0.00 0.00 0.33 ..................................................................GTATCTGCATCGGTATCTGC............................................... 20 2 1.00 0.00 0.00 1.00 0.00 ................................................................ATGTATCTGTATCTGAAC................................................... 18 3 0.67 0.00 0.00 0.67 0.00 ...........................................................TGTATCTGTATCTGCATC........................................................ 18 9 0.22 0.00 0.00 0.00 0.22 ...................................................................TATCTGAATCTGTATCTGA............................................... 19 2 1.00 0.00 1.00 0.00 0.00 .................................................................TGTATCTGTATCTGCATC.................................................. 18 9 0.22 0.00 0.00 0.00 0.22 ..............................................................ATCTGTATCTGTATCTGT..................................................... 18 8 0.25 0.00 0.00 0.00 0.25 ....................................................................ATCTGTATCTGTATCTGT............................................... 18 8 0.25 0.00 0.00 0.00 0.25 ...........................................................TGTATCTGTATCTGTATC........................................................ 18 6 0.17 0.00 0.17 0.00 0.00 .............................................................TATCTGTATCTGTATCTGTATT.................................................. 22 5 0.20 0.00 0.00 0.00 0.20 .................................................................TGTATCTTTATCTGTATCTG................................................ 20 5 0.20 0.00 0.00 0.20 0.00 ..............................................................ATCTGTATCTGTATCTGTATCC................................................. 22 3 0.33 0.00 0.33 0.00 0.00 ....................................................................ATCTGTATCTGTATCTGTA.............................................. 19 8 0.13 0.00 0.00 0.00 0.13 ..........................................................CTGTATCTGTATCTGTATCTGTATC.................................................. 25 3 0.33 0.00 0.00 0.00 0.33 ...............................................................TCAGTATCTGTATCTGTATCT................................................. 21 3 0.33 0.00 0.33 0.00 0.00 .................................................................TGCATTTGTATCTGTATCTGC............................................... 21 2 0.50 0.00 0.00 0.00 0.50 ......................................................................CTGTATCTGTATCTGTAC............................................. 18 6 0.17 0.00 0.00 0.00 0.17 ..............................................................ATCTGTATCTGTATCTGTA.................................................... 19 8 0.13 0.00 0.00 0.00 0.13 ............................................................GTATCTGTATCTGTATCTGTA.................................................... 21 6 0.17 0.00 0.17 0.00 0.00 ......................................................................CTGTATCTGTATCTGCAT............................................. 18 6 0.17 0.00 0.00 0.00 0.17 ...............................................................AACGTATCTGTATCTGTA.................................................... 18 5 0.20 0.00 0.00 0.00 0.20 ................................................................CTGTATCTGTATCTGTAC................................................... 18 6 0.17 0.00 0.00 0.00 0.17 ...........................................................TGTATCTTTATCTGTATCTG...................................................... 20 5 0.20 0.00 0.00 0.20 0.00 ................................................................CTGTATCTGTATCTGCAT................................................... 18 6 0.17 0.00 0.00 0.00 0.17 ...............................................................TCTTTATCTGTATCTGTATCT................................................. 21 3 0.33 0.00 0.00 0.00 0.33 .......................................................CAAATGTATCTGTATCTGA........................................................... 19 3 0.33 0.00 0.00 0.00 0.33 ..........................................................GTxTTTATGTATCTGTATCTG...................................................... 20 2 0.50 0.50 0.00 0.00 0.00 ..............................................................ATCTGTATCTGTATCTGAATCT................................................. 22 3 0.33 0.33 0.00 0.00 0.00 ..................................................................GTATCTGTATCTGTATCTGTA.............................................. 21 6 0.17 0.00 0.17 0.00 0.00 ....................................................................ATTTGTATCTGCATCTGC............................................... 18 4 0.25 0.00 0.00 0.00 0.25 .........................................................AACGTATCTGTATCTGTA.......................................................... 18 5 0.20 0.00 0.00 0.00 0.20 .................................................................TGTATCTGTATCTGTATCTCC............................................... 21 2 0.50 0.00 0.50 0.00 0.00 ..................................................................GTATCTTTATCTGTAGCT................................................. 18 2 0.50 0.00 0.00 0.50 0.00 ............................................................GTATCTGTATCTGTATCTGTATCT................................................. 24 3 0.33 0.00 0.00 0.00 0.33 ...................................................................TATCTGTATCTGTATCTGTATT............................................ 22 5 0.20 0.00 0.00 0.00 0.20 ..............................................................ATTTGTATCTGTATCTGTATC.................................................. 21 3 0.33 0.00 0.33 0.00 0.00 ..................................................................GTATCTGTATCTGTATCC................................................. 18 6 0.17 0.00 0.00 0.00 0.17 ..............................................................ATCTGTATCTGTATCTGTATCTG................................................ 23 3 0.33 0.00 0.00 0.33 0.00 .................................................................TGTATCTGTATCTGTATC.................................................. 18 6 0.17 0.00 0.17 0.00 0.00 ...............................................................TATCTATCTGTATCTGAATC.................................................. 20 2 0.50 0.00 0.00 0.50 0.00 .....................................................................TCTGAATCTGTATCTGCC.............................................. 18 2 0.50 0.00 0.50 0.00 0.00 ............................................................GTATCTGTATCTGTATCC....................................................... 18 6 0.17 0.00 0.00 0.00 0.17

droSec1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_0:11818438-11818570 +	94.79	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG GCCAGTGCATCCTACGGATGTCGAGCAGTACTCGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGTTGCTTTATTCGTATCCATGTGACGCGTCGCG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..............................................................ATATGTATCTGTGTGTGT..................................................... 18 4 0.25 0.00 0.25 0.00 ...........................................CAGCTGCAGATGCAAATGTATATGT................................................................. 25 3 0.33 0.00 0.00 0.33 ............................................................GTATxTGTATCTGTATCTG...................................................... 18 8 0.13 0.00 0.00 0.13 ...........................................................TATATATGTATCTTTATCTGT..................................................... 21 3 0.33 0.33 0.00 0.00 ................................................GCAGATCCAAGTGTATATG.................................................................. 19 3 0.33 0.00 0.00 0.33 ..................................................................GTATxTGTATCTGTATCTG................................................ 18 8 0.13 0.00 0.00 0.13 ..............................................................ACAAGTATCTGTATCTGTATCT................................................. 22 3 0.33 0.33 0.00 0.00 .....................................................................................................................CATGTGACGCGTCGAG 18 2 0.50 0.00 0.00 0.50 ..................................................................GTATCTGCATCGGTATCTGC............................................... 20 3 0.33 0.00 0.33 0.00 ................................................................ATGCATCTGCATCTGTATCT................................................. 20 3 0.33 0.00 0.33 0.00 ............................................................ATATATGTATCTTTATCTGT..................................................... 20 3 0.33 0.00 0.00 0.33 ..............................................................ATATGTATCTTTATCTGTA.................................................... 19 3 0.33 0.00 0.00 0.33
4	super_27:144281-144395 +	53.27	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGAC-----------------------GCGTCG------CG T----------------------------ACACTTTGTATCTGCAAATGTGTCTGCAGCTGTATTTGTATCAGTATCTGTATCTGCCGCATTT-------------------GTATCTCTCAGACTGTCTGGCTGAGGGAACGCGCGAGAGTCGCGTGTGCA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ............................................................................................................................AAGTCTGGCTGAGGGAAC.................... 18 1 2.00 2.00 0.00 0.00 ............................................................GTAxTTGTATCTGTATCTG................................................................................... 18 8 0.13 0.00 0.00 0.13 ..............................................................................................................................GTCTGGCTGAGGGAACGG.................. 18 1 1.00 1.00 0.00 0.00 ..............................................................ATTTGGATCAGTATCTGTG................................................................................. 19 1 1.00 0.00 1.00 0.00 ..................................................................GTATxTGTATCTGTATCTG............................................................................. 18 8 0.13 0.00 0.00 0.13 ..............................................................................................................................GTCTGGCTGAGGGAACGGTC................ 20 1 1.00 1.00 0.00 0.00
2	super_0:11818476-11818565 +	46.3	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG --------------------------------------ATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGTTGCTTTATTCGTATCCATGTGACGCG----- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..............................................................ATATGTATCTGTGTGTGT..................................................... 18 4 0.25 0.00 0.25 0.00 ..............................................................ACAAGTATCTGTATCTGTATCT................................................. 22 3 0.33 0.33 0.00 0.00 ..................................................................GTATCTGCATCGGTATCTGC............................................... 20 3 0.33 0.00 0.33 0.00 ...............................................................................................................................C----- 25 3 0.33 0.00 0.00 0.33 ............................................................ATATATGTATCTTTATCTGT..................................................... 20 3 0.33 0.00 0.00 0.33 ................................................................ATGCATCTGCATCTGTATCT................................................. 20 3 0.33 0.00 0.33 0.00 ...........................................CAGCTGCAGATGCAAATGTATATGT................................................................. 25 3 0.33 0.00 0.00 0.33 ..............................................................ATATGTATCTTTATCTGTA.................................................... 19 3 0.33 0.00 0.00 0.33 ...........................................................TATATATGTATCTTTATCTGT..................................................... 21 3 0.33 0.33 0.00 0.00 ..................................................................GTATxTGTATCTGTATCTG................................................ 18 8 0.13 0.00 0.00 0.13 ................................................GCAGATCCAAGTGTATATG.................................................................. 19 3 0.33 0.00 0.00 0.33 ............................................................GTATxTGTATCTGTATCTG...................................................... 18 8 0.13 0.00 0.00 0.13
3	super_0:11818482-11818580 +	45.64	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG---------- --------------------------------------------AGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGTTGCTTTATTCGTATCCATGTGACGCGTCGCGACATATGTAA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..............................................................ACAAGTATCTGTATCTGTATCT........................................................... 22 3 0.33 0.33 0.00 0.00 ..............................................................ATATGTATCTGTGTGTGT............................................................... 18 4 0.25 0.00 0.25 0.00 ..................................................................GTATCTGCATCGGTATCTGC......................................................... 20 3 0.33 0.00 0.33 0.00 .....................................................................................................................CATGTGACGCGTCGAGAA........ 18 2 0.50 0.00 0.00 0.50 ................................................................ATGCATCTGCATCTGTATCT........................................................... 20 3 0.33 0.00 0.33 0.00 ............................................................GTATxTGTATCTGTATCTG................................................................ 18 8 0.13 0.00 0.00 0.13 ................................................GCAGATCCAAGTGTATATG............................................................................ 19 3 0.33 0.00 0.00 0.33 ............................................................ATATATGTATCTTTATCTGT............................................................... 20 3 0.33 0.00 0.00 0.33 ...........................................................TATATATGTATCTTTATCTGT............................................................... 21 3 0.33 0.33 0.00 0.00 ..................................................................GTATxTGTATCTGTATCTG.......................................................... 18 8 0.13 0.00 0.00 0.13 ..............................................................ATATGTATCTTTATCTGTA.............................................................. 19 3 0.33 0.00 0.00 0.33

droYak2 - 10 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chr3R:16218838-16218961 +	78.29	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TCCAGTGCATCCTACGGATGCCGAGCTG------CGTTATCTGCAGCTGCAGATGCAAATGTATCTGTATCT--TTCAGTAT-TGCAATGTTGCAGTATCTTTGCTTTATTCGTATCCGTGTGACGCGTCGCG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ............................................................GTATCTGTATCT--TTCCTTAT-.................................................. 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ....................................................................................................................................G 24 32 0.03 0.00 0.00 0.03 0.00 0.00
15	chrX:15214524-15214652 -	59.52	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TCCGTATCTGTATAGGTATCCGTATCTGTATAGGTATCTGTATCCGTATCTGTATAGGTATCTGTATCCGTATCTGTATCCGTATCTGTATT-----TGTATCTGTATCTTTTTCGCATCCATAGTTCGCATCG-- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...........................................................ATCCGTATCCGTATCTGC........................................................... 18 4 0.25 0.00 0.00 0.00 0.00 0.25 ...........................................................ATCTGTATCGGTATCTGTATCGGT..................................................... 24 17 0.06 0.00 0.00 0.06 0.00 0.00 ...................................ATCCGTATCCGTATCTGC................................................................................... 18 4 0.25 0.00 0.00 0.00 0.00 0.25 .......................ATCTGTATATGTATCTGTGT............................................................................................. 20 31 0.03 0.00 0.00 0.03 0.00 0.00 .................................................................................GTAGCTGTATC-----TGTATCTGTATCT.......................... 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ...................................ATCTGTATCGGTATCTGTATCGGT............................................................................. 24 17 0.06 0.00 0.00 0.06 0.00 0.00 ...............................................ATCTGTATCGGTATCTGTATCGGT................................................................. 24 17 0.06 0.00 0.00 0.06 0.00 0.00 .......................................................................ATCCGTATCCGTATCTGC............................................... 18 4 0.25 0.00 0.00 0.00 0.00 0.25 .......................ATCTGTATCGGTATCTGTATCGGT......................................................................................... 24 17 0.06 0.00 0.00 0.06 0.00 0.00 ...............................................ATCTGTATATGTATCTGTGT..................................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ...................................................................................ATCTGTATA-----TGTATCTGTGT............................ 20 31 0.03 0.00 0.00 0.03 0.00 0.00 .........................................................GTATCTGCATCCGTATCTATATCCGT..................................................... 26 1 1.00 1.00 0.00 0.00 0.00 0.00
9	chr3L:2677559-2677669 -	55.73	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG T------------GTGCATGCCTGTCCATACAAGTATCTGTATCTGCAGCAGTATCTGTATCTGTGTCTGTATCTGTGTCTGTGTCTGTATCTGTACAGTATCTGTGTATTATTCCTCCTCAT------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .......................................................CTGTATCTGTxTCTGGATCT............................................................. 19 18 0.06 0.00 0.00 0.00 0.00 0.06 .........................................................................CTGTGTCTGTGTCTGAGTCT........................................... 20 3 0.33 0.00 0.00 0.33 0.00 0.00 .............................................................CTGTGTCTGTGTCTGAGTCT....................................................... 20 3 0.33 0.00 0.00 0.33 0.00 0.00 ...................................................GTAGCTGTATCTGTATCTGTATCT............................................................. 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ...................................................................CTGTGTCTGTGTCTGAGTCT................................................. 20 3 0.33 0.00 0.00 0.33 0.00 0.00 ...........................................................ATCTTTATCTGTATCTGTGTCT....................................................... 22 18 0.06 0.00 0.00 0.06 0.00 0.00 ...........................................................ATCTGTATATGTATCTGTGT......................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00
14	chrX:14874194-14874309 -	55.7	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGC-TTTATTCATATCCATGAGACGCGTCGCG AC-----------AC--AGGTGTAGCTGTATCTGTAGCTGTATCTGTATCTGTATATGTAGCTGTATATGTATCTGTATCTGTATCTGTAG-----CTGTATCTGTATATGTATCTGTATCT---GTATATGTGGCT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .....................................................................GTAGCTGTATCTGTATCTGTAT-----CT....................................... 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ...........................................................ATCTGTATATGTATCTGTGT.......................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ...............................................ATCTGTATATGTATCTGTGT...................................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 .......................................................................ATCTGTATCTGTAGCTGTAG-----CT....................................... 22 22 0.05 0.00 0.00 0.05 0.00 0.00 .......................................................................ATCGGTATCTGTATCGGTAG-----C........................................ 21 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................................................ATCTGTATCTGTAGCTGTAG-----CTGTA.................................... 25 18 0.06 0.00 0.00 0.06 0.00 0.00 .....................GTAGCTGTATCTGTATCTGTATCT............................................................................................ 24 32 0.03 0.00 0.00 0.03 0.00 0.00 .....................................................................GTCCCTGTATCTGTATCTGT................................................ 20 20 0.05 0.00 0.00 0.05 0.00 0.00 .....................................................................GTATCTATATCTGTATCTCT................................................ 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ...............................................................GTAGCTGTATCTGTATCTGTATCT.................................................. 24 32 0.03 0.00 0.00 0.03 0.00 0.00 .........................................ATCTGTATCTGTAGCTGTAGCT.......................................................................... 22 22 0.05 0.00 0.00 0.05 0.00 0.00 .................................GTCCCTGTATCTGTATCTGT.................................................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 .............................................................................ATCTGTATCTGTAG-----CTGTAGCT................................. 22 22 0.05 0.00 0.00 0.05 0.00 0.00 .......................................................................................GTAG-----CTGTATCTGTATCTGTATCT..................... 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ..........................................................TAGCAGTATATGTATCTGTTT.......................................................... 21 1 1.00 0.00 1.00 0.00 0.00 0.00 ....................................................................................................ATCTGTATATGTATCTGTGT................. 20 31 0.03 0.00 0.00 0.03 0.00 0.00 .......................ATCTGTATCTGTAGCTGTAGCT............................................................................................ 22 22 0.05 0.00 0.00 0.05 0.00 0.00 .........................................ATCTGTATCTGTAGCTGTAGCTGTA....................................................................... 25 18 0.06 0.00 0.00 0.06 0.00 0.00 .............................................................................ATCTGTATCTGTAG-----CTGTAGCTGTA.............................. 25 18 0.06 0.00 0.00 0.06 0.00 0.00 .........................................................GTAGCTGTATCTGTATCTGTATCT........................................................ 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ..................................................................................................GTAGCTGTATCTGTATCTGTATCT---............ 24 32 0.03 0.00 0.00 0.03 0.00 0.00 .......................ATCTGTATCTGTAGCTGTAGCTGTA......................................................................................... 25 18 0.06 0.00 0.00 0.06 0.00 0.00 .................................GTAGCTGTATCTGTATCTGTATCT................................................................................ 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ...........................................................................GTAGCTGTATCTGTAT-----CTGTATCT................................. 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ...........................GTAGCTGTATCTGTATCTGTATCT...................................................................................... 24 32 0.03 0.00 0.00 0.03 0.00 0.00
6	chrX:7579117-7579223 +	55.19	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGT---ATTGCAGTATCGCTG-CTTTATTCATATCCATGAGACGCGTCGCG GTATATGTATCT---------------GTATATGT---ATCTGTATATGTATATGTATATGTATATGTATCTGTATCTGTATATGTATCTGTAT--ATGTATCTTTATCTTTATCTTTACCCA---------TCGC- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ......................................................................................ATCTGTAT--ATGTATCTGTGT............................. 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ..................................................................GTAGCTGTATCTGTATCTGTATCT............................................... 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ......................................ATCTGTATATGTATCTGTGT............................................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ........................................................ATCTGTATATGTATCTGTGT............................................................. 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ........ATCT---------------GTATATGT---ATCTGTGT........................................................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ..........................................................................ATCTGTATATGTATCTGTGT--......................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00
1	chr3L:612738-612857 +	51.48	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCG-TCGCG CCCAC--AGTCACACGG------CGTAGTACTCGTATCTGTATCTGTATCTGTATCTGTGACTGTAGCTGTATCTGTATCCGTATCT---------CTGTGTCGGTGAGTTGCCAACGTCGCTGTCGTTCGCTTGTG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..............................CTCGxATCTGTATCTCTATCT...................................................................................... 20 1 2.00 0.00 0.00 0.00 0.00 2.00 .........................................ATCTTTATCTGTATCTGTGTCT.......................................................................... 22 18 0.06 0.00 0.00 0.06 0.00 0.00 .....................................CTGTATCTGTxTCTGGATCT................................................................................ 19 18 0.06 0.00 0.00 0.00 0.00 0.06 ...................................ATCTGTATATGTATCTGTGT.................................................................................. 20 31 0.03 0.00 0.00 0.03 0.00 0.00 .....................................................................GTATCTATATCTGTATCT---------CT....................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 .................................GTCCCTGTATCTGTATCTGT.................................................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ...................................ATCTGTATCTGTAGCTGTAGCT................................................................................ 22 22 0.05 0.00 0.00 0.05 0.00 0.00 ...................................ATCTTTATCTGTATCTGTGTCT................................................................................ 22 18 0.06 0.00 0.00 0.06 0.00 0.00 ...........................................................................................................ACTTGCCATCGTCGCTGT............ 18 1 1.00 0.00 0.00 0.00 0.00 1.00 .......................................GTCCCTGTATCTGTATCTGT.............................................................................. 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ...............................................................GTAGCTGTATCTGTATCTGTATCT---------......................................... 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ...............................................ATCTGTATCTGTAGCTGTAGCT.................................................................... 22 22 0.05 0.00 0.00 0.05 0.00 0.00 .......................................GTATCTATATCTGTATCTCT.............................................................................. 20 20 0.05 0.00 0.00 0.05 0.00 0.00 .................................GTATCTATATCTGTATCTCT.................................................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 .................................GTAGCTGTATCTGTATCTGTATCT................................................................................ 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ...................................ATCTGTATCGGTATCTGTATCGGT.............................................................................. 24 17 0.06 0.00 0.00 0.06 0.00 0.00 .........................................ATCTGTATATGTATCTGTGT............................................................................ 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ...............................................ATCTGTATCTGTAGCTGTAGCTGTA................................................................. 25 18 0.06 0.00 0.00 0.06 0.00 0.00
4	chr3R:22581361-22581456 +	49.11	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAG-TATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG T-------------------------------------ATCTGTATCTGTAGCTGTATCTGTATTTGTATCTGTATTTGTATCTGTATTTATATCTGTATCTGTGAGTGTGTTCTGTCCTTGTGTCGAATGGC- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ......................................ATCTGTATCTGTAGCTGTAGCTGTA....................................................................... 25 18 0.06 0.00 0.00 0.06 0.00 0.00 ......................................ATCTGTATCTGTAGCTGTAGCT.......................................................................... 22 22 0.05 0.00 0.00 0.05 0.00 0.00 ........................................................ATCTGTATATGTATCTGTGT.......................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ....................................................................ATCTGTATATGTATCTGTGT.............................................. 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ................................................GTAGCTGTATCTGTATCTGTATCT.............................................................. 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ....................................................................................GTATCTATATCTGTATCTCT.............................. 20 20 0.05 0.00 0.00 0.05 0.00 0.00
11	chr3R:6097222-6097326 -	45.04	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTA--------TTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG GAACTTCCATTCGGCCAGTTTCGGTGAGTTCAATTCGATTTTGTGTATCTATATCTGTCTCTGTATCTGTATCTGTATCTGTATCTGTATCTGGAAGCCAGCAGT------------------------------------ Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..............................................................................CTGTATCTGTGTCTGGAAGCCC......................................... 22 1 3.00 0.00 0.00 0.00 0.00 3.00 .................................................................................TATCTGTGTCTGGAAGCC.......................................... 18 1 2.00 0.00 0.00 0.00 0.00 2.00 ......................................................................ATCTTTATCTGTATCTGTGTCT................................................. 22 18 0.06 0.00 0.00 0.06 0.00 0.00 ........................................................GTAGCTGTATCTGTATCTGTATCT............................................................. 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ......................................................................ATCTGTATATGTATCTGTGT................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ..................................................................CTGTATCTGTxTCTGGATCT....................................................... 19 18 0.06 0.00 0.00 0.00 0.00 0.06 .............................................................................TCTGTATCTGCATCTGAAA............................................. 19 2 0.50 0.00 0.00 0.00 0.00 0.50 ............................................................CTGTATCTGTxTCTGGATCT............................................................. 19 18 0.06 0.00 0.00 0.00 0.00 0.06 ....................................................................GTAGCTGTATCTGTATCTGTATCT................................................. 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ........................................................GTCCCTGTATCTGTATCTGT................................................................. 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ............................................GTATCTATATCTGTATCTCT............................................................................. 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ......................................................................ATCTGTATCTGTAGCTGTAGCT................................................. 22 22 0.05 0.00 0.00 0.05 0.00 0.00 GCACTTCGATTCGGCCAG........................................................................................................................... 18 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................................TGTATCTGTATCTGTGTCTGGAAGCC.......................................... 26 1 1.00 0.00 0.00 0.00 0.00 1.00 ........................................................................CTGTATCTGTxTCTGGATCT................................................. 19 18 0.06 0.00 0.00 0.00 0.00 0.06 ..............................................................GTATCTATATCTGTATCTCT........................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ....................................................................GTATCTATATCTGTATCTCT..................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ................................................................ATCTGTATCTGTAGCTGTAGCT....................................................... 22 22 0.05 0.00 0.00 0.05 0.00 0.00 ................................................................ATCTTTATCTGTATCTGTGTCT....................................................... 22 18 0.06 0.00 0.00 0.06 0.00 0.00 ..........................................................................GTATCTGTATCTGTGTCTGGAAGCCCGCA...................................... 29 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................................................ATCTGTATATGTATCTGTGT......................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ................................................................ATCTGTATCTGTAGCTGTAGCTGTA.................................................... 25 18 0.06 0.00 0.00 0.06 0.00 0.00 ..............................................................GTAGCTGTATCTGTATCTGTATCT....................................................... 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ........................................................................................................G------------------------------------ 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ....................................................................GTCCCTGTATCTGTATCTGT..................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ..............................................................GTCCCTGTATCTGTATCTGT........................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 .......CATGCGGCCAGTTTGGGT.................................................................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................................................ATCTGTATCGGTATCTGTATCGGT..................................................... 24 17 0.06 0.00 0.00 0.06 0.00 0.00
8	chrX:16981612-16981697 +	43.31	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCG-CTGCTTTATTCATATCCATGAGACGCGTCGCG T-------------------------------------ATCTGTATCTGCATGTGAAAATGTATCTGTATCTGTATCTGTATCTGCAT-----CGGCATCGGCATCTGTGTGCGTGCCTTTGCCACGC------ Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...............................................................................GCTCTGCAT-----CGGCATCGGC............................... 19 1 3.00 0.00 0.00 0.00 0.00 3.00 ............................................................GTAGCTGTATCTGTATCTGTATCT.................................................. 24 32 0.03 0.00 0.00 0.03 0.00 0.00 ..............................................................ATCTGTATATGTATCTGTGT.................................................... 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ....................................................................ATCCGTATCCGTATCTGC................................................ 18 4 0.25 0.00 0.00 0.00 0.00 0.25 ..................................................................................CTGCxT-----CTGCATCGGCATC............................ 18 2 0.50 0.00 0.00 0.00 0.00 0.50 ............................................................GTATCTATATCTGTATCTCT...................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ............................................................GTCCCTGTATCTGTATCTGT...................................................... 20 20 0.05 0.00 0.00 0.05 0.00 0.00 ..............................................................ATCTGTATCTGTAGCTGTAGCT.................................................. 22 22 0.05 0.00 0.00 0.05 0.00 0.00 .......................................TCTGTATCTGCxTGTGAAC............................................................................ 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ......................................CTCTGTATCTGCxTGTGAA............................................................................. 18 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................AATCCATCTGTATCTGTATCT........................................................ 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ..............................................................ATCTTTATCTGTATCTGTGTCT.................................................. 22 18 0.06 0.00 0.00 0.06 0.00 0.00 ................................................................CTGTATCTGTxTCTGGATCT.................................................. 19 18 0.06 0.00 0.00 0.00 0.00 0.06 .......................................TCTGTATCTGCATCTGAAA............................................................................ 19 2 0.50 0.00 0.00 0.00 0.00 0.50 ............................................................................CTGxCTCTGCAT-----CGGCATC.................................. 18 2 0.50 0.00 0.00 0.00 0.00 0.50 .................................................................................TCTGCAT-----TTGCATCGGCATCTG.......................... 22 1 1.00 0.00 0.00 0.00 0.00 1.00
12	chrX:1393866-1393954 -	42.72	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TATC-TGTA---------TCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT-----CTGTATC--------------------------------T Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head

droEre2 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_4770:9756449-9756546 -	49.5	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TCCAGTGCATCCTACGGATGCCGAGCAT----C--GTTATCTGCAGCTGCAGATGCAAATGT------------ATCTGTATCTGCAGTACGGCTGTA-----------------TCCGTGTGACGCGGCGCG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ............................................................GT------------ATCTGTATCTGCAGCT........................................... 18 7 0.14 0.00 0.00 0.00 0.14
1	scaffold_4820:4130035-4130132 +	47.94	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCA---GTATTGCAGTATCGCTGCTTTATTCATATCCATGAG-----ACGCGTCGCG- T-------------------------------------ATCTGTAGCTGTAGCTGTAGCTGTATCTGTATTTGTATCTGTATCTGTATCTGTAT-------CTGTAGCTGTATCTGCATCTGTGAGTGTGAATGTGTTCTGT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..................................................................GAATTTGTATCTGTATCTGTGT...................................................... 22 1 1.00 0.00 0.00 0.00 1.00 ....................................................................................GTATCTGTAT-------CTGCAGCT................................. 18 7 0.14 0.00 0.00 0.00 0.14 ........................................................................................................CAGCTGGATCTGCATCTG.................... 18 2 0.50 0.00 0.00 0.00 0.50 ........................................CTGTAGCTGGAGCTGTAGCTGTAGCTG........................................................................... 27 1 1.00 0.00 0.00 0.00 1.00 .......................................................................................................GTATCTGTATCTGCAGCT..................... 18 7 0.14 0.00 0.00 0.00 0.14 ...................................................................TATTTGTCTCTGTATCTGCATC..................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ..............................................................................GTATCTGTATCTGCAG-------CT....................................... 18 7 0.14 0.00 0.00 0.00 0.14 ........................................................................GTATCTGTATCTGCAGCT.................................................... 18 7 0.14 0.00 0.00 0.00 0.14
2	scaffold_4690:5802893-5803049 -	47.83	TCCAGTGCATCCTACGGATGTCGAGCAGT-----------ACACGTATTATCTGCAGC--TGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGA-------------GACGCG---TCGCG TCCACTGCAGTCTCGGCATGATGAAGAGCCATCGCTATATCGCCGCCATATCTGTATCTTTGTATCTGCATTTGTGTCCGTATTTGTATCTGTATCTGTAGCATACCTATATAGCTCC-----ACATAGCCATGCACAACTCCATAATGACGTGGATGCGCC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..................GGATGAAGAGCCATCGCTC............................................................................................................................. 19 1 1.00 0.00 0.00 0.00 1.00 .....................................................................................GTATCTGTATCTGCAGCT........................................................... 18 7 0.14 0.00 0.00 0.00 0.14 ...............................................................ATCCGCATTTGTATCCGTAT............................................................................... 20 1 1.00 1.00 0.00 0.00 0.00

droFic1 - 5 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
6	scf7180000453912:712927-713041 -	65.03	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATG--TATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG GC--GTGCATCCTACGGATGTCGAGCAGTGC------TATCTGCAGCTGCAGATGCAAATGTATCTGGGTATCCG----TGTATCTGCGCTATCGCAGT--------TTCATTTGTATCTGTGTGACGCGTCGCG Size Hit Count Total Norm
7	scf7180000453926:326838-326966 -	55.12	TCCAGTGCATCCTACGGATGTC--GAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGC---AGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG CTCCAT-------ATGTATATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAGCTGCAAATGTATCTGCGTCCGTGTCTGGATCTTCCTGCTGGTTCCTCCATCTCGGTTTTATTTCTGCT-----GCTGCATTGTG Size Hit Count Total Norm
1	scf7180000454072:1556273-1556384 +	53.72	TC--CAGTGCATCC---TACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG CTGTCCATGTATCTGTATCTGTATTTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT----------------CTGTATCTGTATCTG-------------T Size Hit Count Total Norm
2	scf7180000454072:1556349-1556472 +	53.44	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACG--------------CGTCGCG ATCTGTAT-----------------------CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTGTCTGTTTCTGTATGTTTGTTTTGTTGTTGTTTAGTTTATTTTTATAACACTAACAAATCCAGGCTCAA---T Size Hit Count Total Norm
3	scf7180000453882:839282-839446 -	43.74	TCCA-------GTGCATC-------CTACGGATGTCGAGCA------GTACACGTATTATCT------------GCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGAC--------------GC-GTCGCG TCTATGTATAGGTGCCTCTATCTCCATCTGTATCTCTATCTGTATCTGTACATGTAT---CTGCATCGCCAGCTGAAGCTACATCTGTATCTGTATTTGTATCTGTATCTGTATCTGTGGCTGTGCAGCT------------CCCTCTTCATTTGATTCCGTTTTGGTTTCGCTTTTGCG Size Hit Count Total Norm

droEug1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409584:290211-290321 +	62.6	TCCAGTGCATCCTACGGATGT---CGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTT-ATTCATATCCATGAGACGCGTCGCG TCCAGTGCATCCTACGGATGTTGACGGGC------CGTATTATCTGCAGCTGCAGATGCAAATGTATCTGTATCT--------------------GCAGTATCGCTGTTTTAATTCGTATCTGTGTGACGCGTCGCG Size Hit Count Total Norm
2	scf7180000409463:501162-501298 -	59.0	TCCAGTGCATC----CTACGGATGTCGAGCAGTACACGTATTATCTG--CAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAG-TATTGCAGTATC-GCTGCTTTATTCATATCCATGAGACGCGTCGCG TTCAGTTGATTTACTATCCGGCCCCCGAAGAATTAACCAAGTATCTGAGTATCTGTATCTGCAAATGTATCTGTATCTGTATCTGTTTCTGTATCTGTTTCTGTATCTGTTTCTGTATCAGTATCTGTGCGAG---TC-AG Size Hit Count Total Norm

droBia1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000302075:5567085-5567191 -	59.57	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG CGCAGTGCATCCTACGGATGTCGAGCAGTGC------TATCTGCAGCTGCAGATGCGAATGTATCTGTATCT--------------------GCAGTATCGCCGCTTTATTCGTATCTGTGCGACGCGTCGCG Size Hit Count Total Norm
3	scf7180000302402:1433765-1433869 -	45.21	TCCAGTGCATCC-----TACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG CAAAAAGCATTCGCATTTGCGAATCT---------------TTATCGCCGTCTGCAGATG------TAGATGTATCTGTATCTGTATCTGCGAACTGTGCGTAT-----CTTTATTTGC-------AAACGCACGCAG Size Hit Count Total Norm
1	scf7180000302126:1310437-1310545 +	42.21	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---------------TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TTCACTGTGTT----GGATCT------GTATCTGCATCTGCTTCGGTACTTGTATCTGCATCTGCATCTGTACTTGTATCTGTATCTGCATCTGCATCTGTACTT-----GT---------------ATCTGCATCTG---------C Size Hit Count Total Norm

droTak1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000415396:184472-184588 -	66.98	T-------CCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TCAGGCACCCAGTGCATCCTACGGATGTCGAGCAGTAC------TATCTGCAGCTGCAGATGCAAATGT------------ATCTGTATCTGCAGTATCGC-----CGCTGCTTTATTCGTATCTGTGCGACGCGTCGCG Size Hit Count Total Norm
1	scf7180000415394:796518-796640 -	50.66	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCA---GTATTGCAGTATCGCTGCTTTATTCATATCCATGAGAC-GCGT--CGCG TCCTGCACCGTCT------------TGGTATCCGT---ATCCGTAGTTGTAGCTATAGATGTATCTGTATCTGTAGCTGTTTCTGCATCTGTATCGCCAG-CTGTAGCTACATTTGTATCTGTGGTTCTACAGCACTCT Size Hit Count Total Norm

droEle1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000491011:1825266-1825390 +	59.1	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAG-TATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TATACTGCAT---AGAGATGAAGATACAGATACGT---ATCTGTAAATGTATCTGTAAATGTATCTGTATCTGTGTCTGTGTCTGTGGCTGGTGCATTCTGAATGCACCATTAAT---GATCAGACGGGCGGCG Size Hit Count Total Norm
3	scf7180000491047:916740-916846 +	58.96	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TCCAGTGCATCCTACGGATGTCGAGCAGT------ATTATCTGCAGCTGCAGATGCAAATGTATCTGTATC------------T--------GCGGTATCGCCGCTTTACCAGTGTCTGTGTGACGCGTCGCG Size Hit Count Total Norm
1	scf7180000490214:402433-402611 +	33.93	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATT-----------------------------------------ATC----TGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCG-TCGCG TCCTGCACCATCTTAGTATCTCTATCCCTATTTGTATCTGTATGTGTGAGTGTATCTGTGCCAGCAACTGAATCAGTGTATCTGTTTCTATGTACATCTGTATCTGTACATGTATCTGTAGCTGTATCTGTGGTTGTGCAGCACTCTTCATTTGATTCCGTTTAGGTTTCGCTTTTGCG Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000762751:7752-7858 -	57.19	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG ----ATGCATCCTACGGATGTCGAGCAGC------ATTATCTGCAGCTGCAGATGCAAATGT------------ATCTGTATCTGCTGTATCGC-----CGCTTCATTATTTGTGTCTGTGTGACGCGTCGCG Size Hit Count Total Norm

droKik1 - 6 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
6	scf7180000302610:1086546-1086678 -	55.79	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTAT---TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGC------A------GTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG TCT--TTCCTTCCGCCGCTGTGTAGCTGTATCTGTATCTGTATCTGTATCTGTAGCTGAAAATGTATCTGTATCTGTAGCTGTATCTTTTG-----CTAAGCCAGCCGAGGGGCCTCTGTTTTTTTAAACCCAAT--------TCTCG Size Hit Count Total Norm
5	scf7180000302592:443805-443922 -	52.67	TCCAGTGCATCC-TACGGATGTCGAGCAGTACACGTAT---------TATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG GCTCGAGTATCTGTGTCAACATCTAGCTGTATCTGTATCTGTAACTGTCTTTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAGCCTCTCACTGAATCTGCATT------------------------- Size Hit Count Total Norm
2	scf7180000302685:464295-464387 +	51.56	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGT----ATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG -----------------------------AAACATTTAATATTCAGCTGCAGCTGCAACTGTAATTGTATCTGTATCTGTATCTGCAA--CTGCAACTGCAACTGCCTCTGCATCCATATCCAT------------- Size Hit Count Total Norm
4	scf7180000302475:2363483-2363605 -	49.86	TC---------------------------CAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTAT--TG-CAGTATCGCTGCT--TTATTCAT---ATCCATGAGACGCGTCGCG TCCCAACCCATCTGCGGTCCAGGTCCAGCCAGTGCATCCTACGGATGCCGAGG---------------------------------------------TGTATCTGTATCTGCGGTGGCCTGCCCGTATCAGGGATTTTTTTTCCTACAATCTGTGTGACGCGTCGCG Size Hit Count Total Norm
7	scf7180000302696:1902197-1902306 -	45.12	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTA-TTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG GACAG--------ACAGTTGGCAGGCAGT-----------TGGCAACTGCAACTGCAGCCGTATCTGTATCTGCATCTGTATCTGTAACAGCTGCAGC--TGCAGATGCATCTGTATCTGT---ATATGTCTCC Size Hit Count Total Norm
1	scf7180000302392:571012-571086 +	41.22	TCCAGTGCATCCTACGGATGTCGAGCAGTACACGTATTATCTGCAGCTGCAGATGCAAATGTATATGTATCTGTATCTGTATCTGCAGTATTGCAGTATCGCTGCTTTATTCATATCCATGAGACGCGTCGCG T------------------------------------TATCTGCAGCTGTGGCTGCGACTGTGTCTGTATCCGTATCTGTAGCTGTATCGGTGCCATGTTGCTTTTTTGTT---------------------- Size Hit Count Total Norm

droAna3 - 2 hits found