dme-mir-193- Best orthologs

dme-mir-193	chr3L:21567114-21567221 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 21567132-21567153
   star strand at position 21567186-21567207
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:21567099-21567236 +		1	T-TTGATC---GC-------------------AATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droSim1	chr3L:20903305-20903442 +	LASTZ	1	T-TCGATC---GC-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droSec1	super_11:1487328-1487465 +	LASTZ	1	T-TCGATC---GC-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droYak2	chr3L:18945598-18945735 -	LASTZ	1	T-TTGATC---GG-------------------AATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droEre2	scaffold_4784:21221186-21221323 +	LASTZ	1	T-TTAATC---GG-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droEug1	scf7180000409472:386343-386481 +	LASTZ	4	C-TTATTC---GA-------------------AATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT------
droBia1	scf7180000302377:1758743-1758881 -	LASTZ	4	T-TTGATC---GA-------------------GATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGAC------
droTak1	scf7180000415388:255448-255576 +	LASTZ	4	C-TTAATC-----------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTC---------
droEle1	scf7180000491255:2722765-2722902 -	LASTZ	4	TCTTGTTA---GA-------------------AATAC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT------
droRho1	scf7180000780059:195363-195506 -	LASTZ	4	TCTTGATC---GA-------------------AATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCAT--ATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATGATGAA
droFic1	scf7180000453831:395567-395700 +	LASTZ	4	C-CAGATC---GA-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCAT--ATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGG---CCAT------
droKik1	scf7180000302694:467035-467162 +	LASTZ	4	T----------------------------------CTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCAT--ATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAAT------
droAna3	scaffold_13337:17070826-17070956 -	LASTZ	1	C-CGAATC---GA-------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT--ATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTA--------------
droBip1	scf7180000396641:558575-558713 -	LASTZ	4	T-CGAATC---CA-------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT--ATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGAT------
dp4	chrXR_group6:2746028-2746170 -	LASTZ	1	C-TCAATT---GG-------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT--ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-AA
droPer1	super_9:1042494-1042636 -	LASTZ	1	C-TCAATT---GG-------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT--ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-AA
droWil1	scaffold_180727:1082196-1082335 -	LASTZ	1	T-TTAATT---AA-----------TC------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACA-AGTCAAAAATTTAT-TATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACG-AAAT------
droVir3	scaffold_13049:17910638-17910773 +	LASTZ	1	C-TTAATG---GT-------------------TGTAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGT--AT-CGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAGT-A-TAAC------
droMoj3	scaffold_6680:23178993-23179110 +	LASTZ	1	-------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----T--TATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGT-T-CAA-------
droGri2	scaffold_10030:24062-24212 -	LASTZ	1	T-ATAACTATCGAGGAAATTTACATAAATGTGCTAAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCT-T--TATCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCA---------------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	T-TTGATC---GC-------------------AATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droSim1	T-TCGATC---GC-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droSec1	T-TCGATC---GC-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droYak2	T-TTGATC---GG-------------------AATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droEre2	T-TTAATC---GG-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------
droEug1	C-TTATTC---GA-------------------AATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT------
droBia1	T-TTGATC---GA-------------------GATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGAC------
droTak1	C-TTAATC-----------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTC---------
droEle1	TCTTGTTA---GA-------------------AATAC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT------
droRho1	TCTTGATC---GA-------------------AATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCAT--ATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATGATGAA
droFic1	C-CAGATC---GA-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCAT--ATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGG---CCAT------
droKik1	T----------------------------------CTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCAT--ATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAAT------
droAna3	C-CGAATC---GA-------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT--ATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTA--------------
droBip1	T-CGAATC---CA-------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT--ATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGAT------
dp4	C-TCAATT---GG-------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT--ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-AA
droPer1	C-TCAATT---GG-------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT--ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-AA
droWil1	T-TTAATT---AA-----------TC------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACA-AGTCAAAAATTTAT-TATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACG-AAAT------
droVir3	C-TTAATG---GT-------------------TGTAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGT--AT-CGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAGT-A-TAAC------
droMoj3	-------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----T--TATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGT-T-CAA-------
droGri2	T-ATAACTATCGAGGAAATTTACATAAATGTGCTAAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCT-T--TATCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCA---------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

T-TCGATC---GC-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	11087.00	0.00	11045.00	15.00	27.00
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	4303.00	0.00	4291.00	6.00	6.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	568.00	0.00	566.00	2.00	0.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	382.00	0.00	382.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	335.00	0.00	332.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	164.00	0.00	162.00	0.00	2.00
........................................................TTGGGATTTTTTAGATCAGCT.............................................................................................	21	1	149.00	0.00	149.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	139.00	0.00	138.00	0.00	1.00
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	1	110.00	0.00	110.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	102.00	0.00	102.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	79.00	0.00	78.00	1.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	58.00	0.00	58.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	58.00	0.00	58.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	57.00	0.00	56.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGC...........................................................................................	23	1	42.00	0.00	42.00	0.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCC.......................................	19	1	41.00	0.00	41.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATC.................................................................................................	19	1	36.00	0.00	36.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	27.00	0.00	27.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGG...........................................................................................	23	1	26.00	0.00	26.00	0.00	0.00
......................................................GTTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	23.00	0.00	23.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGT..............................................................................................	20	1	21.00	0.00	21.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAAC..............................................................................................	20	1	20.00	0.00	20.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGAT..........................................................................................	24	1	19.00	0.00	19.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGG..............................................................................................	20	1	19.00	0.00	19.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCTT............................................................................................	22	1	16.00	0.00	16.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCATT...........................................................................................	23	1	16.00	0.00	16.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	14.00	0.00	14.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAAC..............................................................................................	22	1	12.00	0.00	12.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCA................................................................................................	20	1	12.00	0.00	12.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCC.............................................................................................	21	1	12.00	0.00	12.00	0.00	0.00
................................................................................................................TACTGGCCTACTAAGTCC........................................	18	1	10.00	0.00	10.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAC............................................................................................	22	1	10.00	0.00	10.00	0.00	0.00
........................................................TTGGGACTTTTTAGATCAGC..............................................................................................	20	1	9.00	0.00	9.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	9.00	0.00	9.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCGGC..............................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	1	8.00	0.00	8.00	0.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAAC....................................	21	1	8.00	0.00	8.00	0.00	0.00
........................................................TTGGGCTTTTTTAGATCAGC..............................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAACT...................................	23	1	8.00	0.00	8.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCG.............................................................................................	21	1	8.00	0.00	8.00	0.00	0.00
......................................................GCTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	7.00	0.00	7.00	0.00	0.00
......................................................GGTTGGGGTTTTTTAGATCAGC..............................................................................................	22	1	7.00	0.00	7.00	0.00	0.00
........................................................TTGGGAxTTTTTAGATCAGC..............................................................................................	19	1	7.00	0.00	7.00	0.00	0.00
........................................................TTGTGATTTTTTAGATCAGC..............................................................................................	20	1	7.00	0.00	7.00	0.00	0.00
........................................................TTGGGATTTTTTAGGTCAGC..............................................................................................	20	1	6.00	0.00	5.00	1.00	0.00
......................................................GGTTCGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
......................................................GGTTTGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
......................................................GGTTGGGAxTTTTTAGATCAGC..............................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
..........................................................GGGATTTTTTAGATCAGC..............................................................................................	18	1	6.00	0.00	6.00	0.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	1	6.00	0.00	6.00	0.00	0.00
.........................................................TTGGATTTTTTAGATCAGC..............................................................................................	19	1	6.00	0.00	6.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGG..............................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
........................................................TTGGGATTTTTCAGATCAGC..............................................................................................	20	1	6.00	0.00	6.00	0.00	0.00
........................................................TTCGGATTTTTTAGATCAGC..............................................................................................	20	1	6.00	0.00	6.00	0.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCC.......................................	18	1	5.00	0.00	5.00	0.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACA...................................	22	1	5.00	0.00	5.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGATC.................................................................................................	19	1	5.00	0.00	5.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTTT.........................................................................................	25	1	5.00	0.00	5.00	0.00	0.00
........................................................TTTGGATTTTTTAGATCAGC..............................................................................................	20	1	5.00	0.00	5.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCATC..............................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................TTGGGATTTTTTGGATCAGC..............................................................................................	20	1	5.00	0.00	5.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	5.00	0.00	5.00	0.00	0.00
.........................................................TTGGATTTTTTAGATCAGCAG............................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
.......................................................CTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................TTGGGGTTTTTTAGATCAGC..............................................................................................	20	1	4.00	0.00	4.00	0.00	0.00
.....................................................TGGTTGGGATTTTTTAGATCAGC..............................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................TTGGGATGTTTTAGATCAGC..............................................................................................	20	1	4.00	0.00	4.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCGGC..............................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGAT..................................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
........................................................TTGGGATTTTTTAGATAAGC..............................................................................................	20	1	4.00	0.00	4.00	0.00	0.00
........................................................TTGGGATTTTCTAGATCAGC..............................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCACT...........................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTA..........................................................................................	24	1	3.00	0.00	3.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGA..............................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.................................................................................................................ACTGCCCTACTAAGTCCC.......................................	18	1	3.00	0.00	3.00	0.00	0.00
........................................................GTGGGATTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	2.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGAA..........................................................................................	24	1	3.00	0.00	3.00	0.00	0.00
......................................................GGTTGCGATTTTTTAGATCAGC..............................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGAACAGC..............................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................GGTTGGATTTTTTAGATCAGC..............................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGCAGA...........................................................................................	25	1	3.00	0.00	3.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGATCA................................................................................................	20	1	3.00	0.00	2.00	1.00	0.00
........................................................TTGGGATTTTTTAAATCAGC..............................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
........................................................CTGGGATTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	1.00	0.00	2.00

droSec1

T-TCGATC---GC-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	1540.00	1.00	2.00	1537.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	917.00	2.00	5.00	910.00
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	538.00	0.00	0.00	538.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	393.00	0.00	1.00	392.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	274.00	0.00	1.00	273.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	228.00	0.00	1.00	227.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	189.00	1.00	0.00	188.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	186.00	1.00	0.00	185.00
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	1	143.00	0.00	0.00	143.00
......................................................GGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	74.00	1.00	0.00	73.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	1	67.00	0.00	0.00	67.00
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	1	65.00	0.00	0.00	65.00
......................................................GGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	61.00	0.00	0.00	61.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	49.00	0.00	0.00	49.00
.........................................................TGGGATTTTTTAGATCAGCAGA...........................................................................................	22	1	46.00	0.00	0.00	46.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	41.00	0.00	0.00	41.00
......................................................GGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	41.00	0.00	1.00	40.00
......................................................GGTTGGGATTTTTTAGATCA................................................................................................	20	1	33.00	0.00	0.00	33.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	31.00	1.00	0.00	30.00
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	1	30.00	0.00	0.00	30.00
................................................................................................................TACTGGCCTACTAAGTCCC.......................................	19	1	28.00	0.00	0.00	28.00
........................................................TTGGGATTTTTTAGATCAGCAGAT..........................................................................................	24	1	27.00	0.00	0.00	27.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	17.00	0.00	0.00	17.00
.........................................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................	23	1	15.00	0.00	0.00	15.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACA...................................	22	1	9.00	0.00	0.00	9.00
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	1	9.00	1.00	0.00	8.00
.......................................................GTTGGGATTTTTTAGATCAG...............................................................................................	20	1	8.00	0.00	0.00	8.00
.................................................................................................................ACTGGCCTACTAAGTCCCAAC....................................	21	1	8.00	0.00	0.00	8.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	8.00	0.00	0.00	8.00
........................................................TTGGGATTTTTTAGATCAGCAGC...........................................................................................	23	1	8.00	0.00	0.00	8.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	8.00	0.00	0.00	8.00
........................................................TTGGGATTTTTTAGATCAGA..............................................................................................	20	1	7.00	0.00	0.00	7.00
......................................................GGTTGGGATTTTTTAGATCAGCAA............................................................................................	24	1	6.00	0.00	0.00	6.00
........................................................TTGGGATTTTTTAGATCAGCT.............................................................................................	21	1	6.00	0.00	0.00	6.00
................................................................................................................TACTGGCCTACTAAGTCCCAAT....................................	22	1	6.00	0.00	0.00	6.00
......................................................GGTTGGGATTTTTTAGATCAGA..............................................................................................	22	1	6.00	0.00	0.00	6.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	1	6.00	0.00	0.00	6.00
......................................................GGTTGGGATTTTTTAGATC.................................................................................................	19	1	6.00	0.00	0.00	6.00
.........................................................TGGGATTTTTTAGATCAGCAGC...........................................................................................	22	1	4.00	0.00	0.00	4.00
................................................................................................................TACTGGCCTACTAAGTCCCAACT...................................	23	1	4.00	0.00	0.00	4.00
........................................................TTGGGATTTTTTAGATCAGT..............................................................................................	20	1	4.00	0.00	0.00	4.00
......................................................GCTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	3.00	0.00	0.00	3.00
........................................................TTGGGATTTTTTAGATTAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00
.........................................................TGGGATTTTTTAGATCAGCAGTTT.........................................................................................	24	1	3.00	0.00	0.00	3.00
........................................................TTGGGATATTTTAGATCAGCAG............................................................................................	22	1	3.00	0.00	0.00	3.00
........................................................TTTGGATTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00
.................................................................................................................ACTGGCCTACTAAGTCCCAA.....................................	20	1	3.00	0.00	0.00	3.00
........................................................TTGGGACTTTTTAGATCAGCAG............................................................................................	22	1	3.00	0.00	0.00	3.00
........................................................TTGGGATTTTTTAGATCACC..............................................................................................	20	1	3.00	0.00	0.00	3.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACAT..................................	23	1	3.00	0.00	0.00	3.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	3.00	0.00	0.00	3.00
................................................................................................................TACTGGCCTACTAAGTCCCAT.....................................	21	1	3.00	0.00	0.00	3.00
........................................................TTGGTATTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00
......................................................GGTTGGGATTTTTTAGATCAGCAT............................................................................................	24	1	3.00	0.00	0.00	3.00
........................................................TTGGGATTTTTTAGATCAGCAC............................................................................................	22	1	3.00	0.00	0.00	3.00
................................................................................................................TACTGGCCTACTAAGTCCCAACA...................................	23	1	3.00	0.00	0.00	3.00

droYak2

T-TTGATC---GG-------------------AATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	2	2211.00	0.00	107.00	1.00	271.00	1832.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	2	1449.50	0.00	404.50	8.00	897.00	140.00
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	2	1230.00	0.00	31.50	0.00	60.50	1138.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	2	555.00	0.00	162.50	4.00	388.50	0.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	2	357.50	0.00	67.00	0.00	196.00	94.50
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	2	292.50	0.00	97.00	1.50	193.50	0.50
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	2	266.50	0.00	34.50	2.00	72.50	157.50
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	2	183.00	0.00	33.00	0.50	79.00	70.50
......................................................GGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	2	103.00	0.00	24.00	1.00	57.50	20.50
......................................................GGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	2	69.00	0.00	17.50	0.50	44.50	6.50
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	2	60.00	0.00	12.00	0.00	17.00	31.00
......................................................GGTTGGGATTTTTTAGATCAG...............................................................................................	21	2	44.50	0.00	15.00	0.50	26.00	3.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	2	36.50	0.00	12.00	0.00	23.50	1.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	2	28.50	0.00	4.00	0.00	17.50	7.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	2	28.00	0.00	6.50	0.00	16.00	5.50
........................................................TTGGGATTTTTTAGATCATCAG............................................................................................	22	2	27.50	0.00	9.00	0.00	18.50	0.00
........................................................TTGGGATTTTTTAGATCAGCT.............................................................................................	21	2	25.00	0.00	0.50	0.00	3.00	21.50
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	2	24.50	0.00	8.50	0.00	12.50	3.50
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	2	24.00	0.00	5.00	0.00	17.50	1.50
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	2	16.50	0.00	5.50	0.00	11.00	0.00
........................................................TTGGGATTTTTTATATCAGCAG............................................................................................	22	2	16.50	0.00	5.00	0.00	11.50	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	2	14.00	0.00	3.00	0.00	5.50	5.50
.........................................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................	23	2	13.50	0.00	2.50	0.00	11.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGC..............................................................................................	22	2	11.50	0.00	0.00	0.00	5.50	6.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	2	10.50	0.00	4.50	0.00	5.50	0.50
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	2	9.50	0.00	3.50	0.00	4.50	1.50
........................................................TTGGGATTTTTTAGATCAGCAGC...........................................................................................	23	2	9.00	0.00	1.00	0.00	1.00	7.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	2	9.00	0.00	2.00	0.00	4.50	2.50
.........................................................TGGGATTTTTTAGATCATCAGT...........................................................................................	22	2	8.50	0.00	1.50	0.00	7.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGG...........................................................................................	23	2	8.50	0.00	0.00	0.00	0.00	8.50
.................................................................................................................ACTGGCCTACTAAGTCCCAACAT..................................	23	2	8.50	0.00	2.00	0.00	5.00	1.50
......................................................GTTTGGGATTTTTTAGATCAGC..............................................................................................	22	2	8.00	0.00	0.00	0.00	0.00	8.00
........................................................TTGGGCTTTTTTAGATCAGCAG............................................................................................	22	2	8.00	0.00	2.50	0.00	5.50	0.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	2	8.00	0.00	3.00	0.00	4.00	1.00
.........................................................TGGGATTTTTTATATCAGCAGT...........................................................................................	22	2	7.50	0.00	4.00	0.00	3.50	0.00
......................................................GGTTGGGATTTTTTAGATC.................................................................................................	19	2	7.50	0.00	0.00	0.00	0.00	7.50
......................................................GGTTGGGATTTTTTAGATCAGCAGT...........................................................................................	25	2	7.00	0.00	3.00	0.00	3.50	0.50
........................................................TTGGGATTTTTTAGATCAGCAC............................................................................................	22	2	7.00	0.00	0.00	0.00	4.50	2.50
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	2	7.00	0.00	2.00	0.00	5.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGA...........................................................................................	22	2	6.50	0.00	2.50	0.50	3.50	0.00
.........................................................TGGGATTTTTTATATCAGCAG............................................................................................	21	2	6.50	0.00	5.00	0.00	1.50	0.00
........................................................TTGGGATTTTTTAGATCAGCTG............................................................................................	22	2	6.50	0.00	0.50	0.00	6.00	0.00
........................................................TTGGGATTTTTTAGATCAGCCG............................................................................................	22	2	6.00	0.00	1.50	0.00	4.50	0.00
......................................................GGTTGGGATTTTTTAGATCA................................................................................................	20	2	6.00	0.00	2.50	0.50	2.50	0.50
.......................................................GTTGGGATTTTTTAGATCAGCA.............................................................................................	22	2	6.00	0.00	1.00	0.00	2.50	2.50
.......................................................GTTGGGATTTTTTAGATCAGCAG............................................................................................	23	2	6.00	0.00	1.50	0.00	3.50	1.00
........................................................TTGGGGTTTTTTAGATCAGC..............................................................................................	20	2	5.50	0.00	2.00	0.00	2.50	1.00
........................................................TTGGGATTTTTTAGATCATCA.............................................................................................	21	2	5.50	0.00	0.50	0.00	5.00	0.00
.........................................................TGGGATTTTTTAGATCAGCATT...........................................................................................	22	2	5.50	0.00	1.00	0.00	4.50	0.00
......................................................GGTTGGGATTTTTTAGATCCGC..............................................................................................	22	2	5.00	0.00	0.00	0.00	0.50	4.50
........................................................TTGGGGTTTTTTAGATCAGCAG............................................................................................	22	2	5.00	0.00	0.50	0.00	4.50	0.00
........................................................TTGGGATTTTTTAGCTCAGCAG............................................................................................	22	2	5.00	0.00	0.00	0.00	5.00	0.00
........................................................TTGGGATTTTTTAGATCAGCG.............................................................................................	21	2	5.00	0.00	0.50	0.00	1.00	3.50
.........................................................TGGGATTTTTTAGATCAGCAGC...........................................................................................	22	2	4.50	0.00	1.00	0.00	3.50	0.00
........................................................TTGGGATTTTTTAGATCAGG..............................................................................................	20	2	4.50	0.00	0.00	0.00	0.00	4.50
.......................................................GTTGGGATTTTTTAGATCAG...............................................................................................	20	2	4.50	0.00	1.50	0.50	2.50	0.00
........................................................TTGGGATTTTTTATATCAGCA.............................................................................................	21	2	4.00	0.00	1.00	0.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	2	4.00	0.00	0.50	0.00	3.50	0.00
.......................................................GTTGGGATTTTTTAGATCATC..............................................................................................	21	2	4.00	0.00	0.50	0.00	3.50	0.00
.........................................................TGGGATTTTTTAGATCATCAG............................................................................................	21	2	4.00	0.00	1.00	0.00	3.00	0.00
........................................................TTAGGATTTTTTAGATCAGCAG............................................................................................	22	2	4.00	0.00	4.00	0.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCGGC..............................................................................................	20	2	4.00	0.00	0.00	0.00	1.00	3.00
.........................................................TGGGATTTTTTAGATCAGCCG............................................................................................	21	2	3.50	0.00	1.00	0.00	2.50	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACA...................................	22	2	3.50	0.00	1.50	0.00	1.00	1.00
........................................................TTGGGCTTTTTTAGATCAGC..............................................................................................	20	2	3.50	0.00	0.00	0.00	1.50	2.00
........................................................TTGGGATTTTTTCGATCAGCAG............................................................................................	22	2	3.50	0.00	0.50	0.00	3.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAT............................................................................................	21	2	3.50	0.00	1.50	0.00	2.00	0.00
.........................................................TGGGATTTTTTAGATAAGCAG............................................................................................	21	2	3.50	0.00	0.50	0.00	3.00	0.00
.........................................................TGGGCTTTTTTAGATCAGCAGT...........................................................................................	22	2	3.50	0.00	0.50	0.50	2.50	0.00
......................................................GGTTGGGATTTTTTAGATCATCAG............................................................................................	24	2	3.00	0.00	0.50	0.00	2.50	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAACT...................................	23	2	3.00	0.00	1.00	0.00	0.50	1.50
.........................................................TGGGATTTTTTAGATCAGCCGT...........................................................................................	22	2	3.00	0.00	1.00	0.00	2.00	0.00
........................................................TTGGGATTTTTTAGATCAGTAG............................................................................................	22	2	3.00	0.00	0.50	0.00	2.50	0.00
......................................................GGTTGGGATTTTTTATATCAGC..............................................................................................	22	2	3.00	0.00	1.50	0.00	1.50	0.00
........................................................TTGGGATTTTTTAGATCAGCGG............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00	0.00
.........................................................TGGGAGTTTTTAGATCAGCAGT...........................................................................................	22	2	3.00	0.00	0.00	0.00	3.00	0.00
......................................................GGTTTGGATTTTTTAGATCAGC..............................................................................................	22	2	3.00	0.00	0.00	0.00	0.00	3.00
........................................................TTGGGAxTTTTTAGATCAGC..............................................................................................	19	2	3.00	0.00	0.00	0.00	0.00	3.00
........................................................TTGGGATTTTTTAGATCAGCC.............................................................................................	21	2	3.00	0.00	0.00	0.00	1.50	1.50
......................................................AGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	2	3.00	0.00	0.00	0.00	3.00	0.00
........................................................TTGGGATTTTTTAGATCACCAG............................................................................................	22	2	3.00	0.00	0.00	0.00	3.00	0.00
......................................................GGTTGGGATTTTTTATATCAGCA.............................................................................................	23	2	3.00	0.00	2.00	0.00	1.00	0.00
........................................................TTGGGATTTTTTAGAGCAGCAG............................................................................................	22	2	3.00	0.00	1.50	0.00	1.50	0.00
.......................................................GTTGGGATTTTTTATATCAGC..............................................................................................	21	2	3.00	0.00	0.50	0.00	2.50	0.00
........................................................TTGGGATTTTTTAGATCAAC..............................................................................................	20	2	3.00	0.00	0.00	0.00	0.50	2.50
........................................................TTGGGATTTTTTAGGTCAGC..............................................................................................	20	2	2.50	0.00	0.50	0.00	0.50	1.50
.........................................................TAGGATTTTTTAGATCAGCAGT...........................................................................................	22	2	2.50	0.00	2.00	0.00	0.50	0.00
........................................................TTGGGATTTTTTAGATCAGCTGT...........................................................................................	23	2	2.50	0.00	0.50	0.00	2.00	0.00
........................................................TTGGGATTTTTTAGATCAGCATT...........................................................................................	23	2	2.50	0.00	0.00	0.00	1.50	1.00
.........................................................TGGGATTTTTTAGATCAGCTGT...........................................................................................	22	2	2.50	0.00	0.50	0.00	2.00	0.00
........................................................TTGGGAxTTTTTAGATCAGCAG............................................................................................	21	2	2.50	0.00	1.00	0.00	1.50	0.00
........................................................TTGGGATTGTTTAGATCAGCAG............................................................................................	22	2	2.50	0.00	0.00	0.00	2.50	0.00
........................................................TTGGGGTTTTTTAGATCAGCTG............................................................................................	22	2	2.50	0.00	0.50	0.00	2.00	0.00
.........................................................TGGGATTTTTTAGATCGGCAGT...........................................................................................	22	2	2.50	0.00	0.00	0.00	2.50	0.00
......................................................GGTTGGGATTTTTTAGATCATC..............................................................................................	22	2	2.50	0.00	1.50	0.00	0.50	0.50
........................................................TTGGGATTTTTTAGATCCGCAG............................................................................................	22	2	2.50	0.00	0.50	0.00	2.00	0.00
......................................................GGGTGGGATTTTTTAGATCAGCA.............................................................................................	23	2	2.50	0.00	0.50	0.00	2.00	0.00
.........................................................TGGGGTTTTTTAGATCAGCAGT...........................................................................................	22	2	2.50	0.00	1.00	0.00	1.50	0.00

droEre2

T-TTAATC---GG-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGAC------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	3890.00	0.00	403.00	0.00	3487.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	3494.00	0.00	831.00	0.00	2663.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	1003.00	0.00	171.00	0.00	832.00
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	956.00	0.00	48.00	0.00	908.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	828.00	0.00	241.00	0.00	587.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	822.00	0.00	193.00	0.00	629.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	371.00	0.00	48.00	0.00	323.00
......................................................GGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	269.00	0.00	30.00	0.00	239.00
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	1	191.00	0.00	16.00	0.00	175.00
......................................................GGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	146.00	0.00	15.00	0.00	131.00
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	1	126.00	0.00	24.00	0.00	102.00
......................................................GGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	106.00	0.00	13.00	0.00	93.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	1	104.00	0.00	20.00	0.00	84.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	86.00	0.00	11.00	0.00	75.00
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	1	76.00	0.00	7.00	0.00	69.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	75.00	0.00	19.00	0.00	56.00
........................................................TTTGGATTTTTTAGATCAGCAG............................................................................................	22	1	69.00	0.00	1.00	0.00	68.00
........................................................TTTGGATTTTTTAGATCAGC..............................................................................................	20	1	69.00	0.00	1.00	0.00	68.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	63.00	0.00	9.00	0.00	54.00
........................................................TTGGGATTTTTTAGATAAGC..............................................................................................	20	1	48.00	0.00	1.00	0.00	47.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	45.00	0.00	13.00	0.00	32.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	1	41.00	0.00	8.00	0.00	33.00
........................................................TTGTGATTTTTTAGATCAGCAG............................................................................................	22	1	38.00	0.00	0.00	0.00	38.00
........................................................TTGGGATTTTTTAGATCATCAG............................................................................................	22	1	37.00	0.00	22.00	0.00	15.00
........................................................TTGGGATTTTTTATATCAGCAG............................................................................................	22	1	34.00	0.00	14.00	0.00	20.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	33.00	0.00	13.00	0.00	20.00
........................................................TTGTGATTTTTTAGATCAGC..............................................................................................	20	1	32.00	0.00	0.00	0.00	32.00
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	1	31.00	0.00	8.00	0.00	23.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	30.00	0.00	4.00	0.00	26.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	22.00	0.00	1.00	0.00	21.00
................................................................................................................TACTGGCCTACTAAGTCCCAACT...................................	23	1	20.00	0.00	1.00	0.00	19.00
.......................................................GTTGGGATTTTTTAGATCAGCAG............................................................................................	23	1	20.00	0.00	2.00	0.00	18.00
.........................................................TTGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	17.00	0.00	0.00	0.00	17.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACA...................................	22	1	17.00	0.00	0.00	0.00	17.00
........................................................TTGGTATTTTTTAGATCAGC..............................................................................................	20	1	17.00	0.00	0.00	0.00	17.00
......................................................GGTTTGGATTTTTTAGATCAGC..............................................................................................	22	1	16.00	0.00	0.00	0.00	16.00
........................................................TTGGGATTTTTTAGATAAGCAG............................................................................................	22	1	16.00	0.00	2.00	0.00	14.00
......................................................GGTTGGGATTTTTTAGATCAGCAA............................................................................................	24	1	15.00	0.00	0.00	0.00	15.00
........................................................TTGGTATTTTTTAGATCAGCAG............................................................................................	22	1	15.00	0.00	0.00	0.00	15.00
.........................................................TTGGATTTTTTAGATCAGCAG............................................................................................	21	1	15.00	0.00	0.00	0.00	15.00
........................................................TTGGGATTTTTTAGATCAGAAG............................................................................................	22	1	15.00	0.00	4.00	0.00	11.00
.........................................................TGGGATTTTTTAGATCAGCAGA...........................................................................................	22	1	15.00	0.00	2.00	0.00	13.00
........................................................TTGGGATTTTTTATATCAGCA.............................................................................................	21	1	14.00	0.00	6.00	0.00	8.00
.......................................................GTTGGGATTTTTTAGATCAGCA.............................................................................................	22	1	14.00	0.00	3.00	0.00	11.00
.........................................................TGTGATTTTTTAGATCAGCAGT...........................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
......................................................GGTTGGGATTTTTTAGATAAGC..............................................................................................	22	1	13.00	0.00	0.00	0.00	13.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	13.00	0.00	3.00	0.00	10.00
......................................................GGTTGGGATTTTTTAGATCA................................................................................................	20	1	12.00	0.00	3.00	0.00	9.00
........................................................TTGGGATTTTTTAGATCATCA.............................................................................................	21	1	12.00	0.00	6.00	0.00	6.00
................................................................................................................TACTGGCCTACTAAGTCCC.......................................	19	1	12.00	0.00	1.00	0.00	11.00
........................................................TTTGGATTTTTTAGATCAGCA.............................................................................................	21	1	12.00	0.00	0.00	0.00	12.00
........................................................TTGGGATTTTTTAGATCAGA..............................................................................................	20	1	12.00	0.00	0.00	0.00	12.00
.........................................................TGGGATTTTTTAGATCATCAG............................................................................................	21	1	11.00	0.00	5.00	0.00	6.00
.........................................................TGGGATTTTTTAGATCAGCAT............................................................................................	21	1	10.00	0.00	2.00	0.00	8.00
........................................................TTGGGATTTTTTAGATCACC..............................................................................................	20	1	10.00	0.00	1.00	0.00	9.00
........................................................TTGGGCTTTTTTAGATCAGC..............................................................................................	20	1	10.00	0.00	2.00	0.00	8.00
.........................................................TGGGATTTTTTAGATCATCAGT...........................................................................................	22	1	9.00	0.00	3.00	0.00	6.00
........................................................TTAGGATTTTTTAGATCAGCAG............................................................................................	22	1	9.00	0.00	6.00	0.00	3.00
........................................................TTGGGGTTTTTTAGATCAGCAG............................................................................................	22	1	9.00	0.00	4.00	0.00	5.00
........................................................TTGGGATTTTTTAGCTCAGCAG............................................................................................	22	1	9.00	0.00	6.00	0.00	3.00
......................................................GGTTGGGATTTTTTAGATCAGA..............................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
......................................................GGTTGTGATTTTTTAGATCAGC..............................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
........................................................TTGGGAxTTTTTAGATCAGC..............................................................................................	19	1	8.00	0.00	0.00	0.00	8.00
........................................................TTGGGATTTTTTAGATTAGCAG............................................................................................	22	1	8.00	0.00	2.00	0.00	6.00
.........................................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................	23	1	8.00	0.00	1.00	0.00	7.00
................................................................................................................TACTGGCCTACTAAGTCCCAACA...................................	23	1	8.00	0.00	0.00	0.00	8.00
........................................................TTGGGATTTTTTAGATCACCAG............................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
........................................................TTAGGATTTTTTAGATCAGC..............................................................................................	20	1	8.00	0.00	1.00	0.00	7.00
......................................................GGTTGGGATTTTTTAGATCAGCC.............................................................................................	23	1	7.00	0.00	0.00	0.00	7.00
.........................................................TTGGATTTTTTAGATCAGC..............................................................................................	19	1	7.00	0.00	0.00	0.00	7.00
........................................................TTGGGAxTTTTTAGATCAGCAG............................................................................................	21	1	7.00	0.00	5.00	0.00	2.00
........................................................TCGGGATTTTTTAGATCAGCAG............................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
......................................................GGTTGGTATTTTTTAGATCAGC..............................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
.........................................................TGGGCTTTTTTAGATCAGCAGT...........................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACAT..................................	23	1	7.00	0.00	1.00	0.00	6.00
........................................................TTGGGCTTTTTTAGATCAGCAG............................................................................................	22	1	7.00	0.00	1.00	0.00	6.00
................................................................................................................TACTGGCCTACTAAGTCC........................................	18	1	6.00	0.00	0.00	0.00	6.00
........................................................TTGGGGTTTTTTAGATCAGC..............................................................................................	20	1	6.00	0.00	1.00	0.00	5.00
........................................................TTGAGATTTTTTAGATCAGC..............................................................................................	20	1	6.00	0.00	0.00	0.00	6.00
.........................................................TGGGATTTTTTATATCAGCAG............................................................................................	21	1	6.00	0.00	0.00	0.00	6.00
........................................................TTGGGATTTTTTAGACCAGC..............................................................................................	20	1	6.00	0.00	0.00	0.00	6.00
......................................................TGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
........................................................TTGGGATTTTTTAGATCGGCAG............................................................................................	22	1	6.00	0.00	4.00	0.00	2.00
........................................................TTGGGATTTTCTAGATCAGCAG............................................................................................	22	1	6.00	0.00	1.00	0.00	5.00
.........................................................TGGGATTTTTTAGATAAGCAGT...........................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
......................................................GGTTGGGATTTTTTAGATCATC..............................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
........................................................TTGGGATTTTTTAGATCAGT..............................................................................................	20	1	6.00	0.00	1.00	0.00	5.00
........................................................TTGGGATTTTTTAAATCAGC..............................................................................................	20	1	6.00	0.00	1.00	0.00	5.00
.........................................................TGGGATTTTTTAGATCAGAAGT...........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................TTGGGATTTTTTCGATCAGC..............................................................................................	20	1	5.00	0.00	2.00	0.00	3.00
................................................................................................................TACTGGCCTACTAAGTCCCAAA....................................	22	1	5.00	0.00	1.00	0.00	4.00
................................................................................................................TACTGGCCTACTAAGTCCAAA.....................................	21	1	5.00	0.00	0.00	0.00	5.00
........................................................TTGGGATTTTTTAGCTCAGC..............................................................................................	20	1	5.00	0.00	1.00	0.00	4.00
........................................................TTGGGATTTTTTGGATCAGC..............................................................................................	20	1	5.00	0.00	1.00	0.00	4.00
......................................................GGTTGGGATTTTTTAGATCAGCAT............................................................................................	24	1	5.00	0.00	1.00	0.00	4.00

droEug1

C-TTATTC---GA-------------------AATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT------

Size

Hit Count

Total Norm

droBia1

T-TTGATC---GA-------------------GATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGAC------

Size

Hit Count

Total Norm

droTak1

C-TTAATC-----------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTC---------

Size

Hit Count

Total Norm

droEle1

TCTTGTTA---GA-------------------AATAC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCAT--ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT------

Size

Hit Count

Total Norm

droRho1

TCTTGATC---GA-------------------AATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCAT--ATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATGATGAA

Size

Hit Count

Total Norm

droFic1

C-CAGATC---GA-------------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCAT--ATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGG---CCAT------

Size

Hit Count

Total Norm

droKik1

T----------------------------------CTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCAT--ATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAAT------

Size

Hit Count

Total Norm

droAna3

C-CGAATC---GA-------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT--ATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTA--------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	1948.00	11.00	1874.00	63.00	0.00
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	1933.00	22.00	1646.00	265.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	1332.00	56.00	636.00	640.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	733.00	49.00	479.00	205.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	720.00	16.00	372.00	332.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	472.00	5.00	424.00	43.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	304.00	5.00	254.00	45.00	0.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	293.00	7.00	114.00	172.00	0.00
......................................................GGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	281.00	8.00	222.00	51.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	229.00	4.00	192.00	33.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	1	176.00	0.00	163.00	13.00	0.00
.......................................................GTTGGGATTTTTTAGATCAG...............................................................................................	20	1	156.00	5.00	135.00	16.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	1	153.00	5.00	128.00	20.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	133.00	10.00	73.00	50.00	0.00
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	1	115.00	0.00	98.00	17.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	1	106.00	2.00	88.00	16.00	0.00
......................................................GGTTGGGATTTTTTAGATCA................................................................................................	20	1	105.00	4.00	86.00	15.00	0.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	51.00	1.00	27.00	23.00	0.00
........................................................TTTGGATTTTTTAGATCAGC..............................................................................................	20	1	47.00	0.00	47.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCA.............................................................................................	22	1	46.00	0.00	33.00	13.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	41.00	0.00	24.00	17.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCAG............................................................................................	23	1	40.00	1.00	32.00	7.00	0.00
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	1	39.00	1.00	23.00	15.00	0.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	36.00	0.00	34.00	2.00	0.00
......................................................GGGTGGGATTTTTTAGATCAGC..............................................................................................	22	1	35.00	0.00	32.00	3.00	0.00
......................................................GGTTGGGATTTTTTAGATCATC..............................................................................................	22	1	32.00	0.00	31.00	1.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACA...................................	22	1	28.00	0.00	21.00	7.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	26.00	0.00	19.00	7.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGA...........................................................................................	22	1	26.00	2.00	23.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	25.00	2.00	15.00	8.00	0.00
......................................................GGTTGGGATTTTTTAGATC.................................................................................................	19	1	24.00	0.00	23.00	1.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGCAA............................................................................................	24	1	23.00	0.00	23.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATCA................................................................................................	19	1	21.00	0.00	19.00	2.00	0.00
........................................................TTTGGATTTTTTAGATCAGCAG............................................................................................	22	1	19.00	0.00	18.00	1.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGA..............................................................................................	22	1	19.00	0.00	19.00	0.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................	23	1	18.00	0.00	11.00	7.00	0.00
.......................................................GTTGGGATTTTTTAGATC.................................................................................................	18	1	16.00	0.00	16.00	0.00	0.00
......................................................GGTTTGGATTTTTTAGATCAGC..............................................................................................	22	1	13.00	0.00	13.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCAA............................................................................................	23	1	12.00	0.00	11.00	1.00	0.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	1	12.00	0.00	10.00	2.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACAT..................................	23	1	12.00	1.00	5.00	6.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAT............................................................................................	21	1	11.00	0.00	8.00	3.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGT..............................................................................................	22	1	10.00	1.00	8.00	1.00	0.00
.........................................................TGGGAGTTTTTAGATCAGCAGT...........................................................................................	22	1	9.00	0.00	0.00	9.00	0.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	9.00	0.00	2.00	7.00	0.00
......................................................GGTTGGGATTTTTTATATCAGC..............................................................................................	22	1	9.00	0.00	9.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGAT..................................................................................................	18	1	8.00	0.00	8.00	0.00	0.00
........................................................TTGGGATTTTTTAGATAAGC..............................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGA..............................................................................................	21	1	8.00	0.00	7.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCATCAG............................................................................................	22	1	8.00	0.00	4.00	4.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAACT...................................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................TTGTGATTTTTTAGATCAGC..............................................................................................	20	1	7.00	0.00	7.00	0.00	0.00
......................................................GGTTGGGCTTTTTTAGATCAGC..............................................................................................	22	1	7.00	0.00	7.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAAC..............................................................................................	22	1	7.00	0.00	7.00	0.00	0.00
......................................................GGTTGGGATTTTTTAGATCAT...............................................................................................	21	1	7.00	1.00	5.00	1.00	0.00
......................................................GGTTGGGATTTTTTAGATCACC..............................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGC...........................................................................................	23	1	6.00	0.00	5.00	1.00	0.00
.........................................................TGGGATTTTTTAGATCATCAG............................................................................................	21	1	6.00	0.00	4.00	2.00	0.00
......................................................GGGTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	6.00	0.00	5.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCAGCATT...........................................................................................	23	1	6.00	0.00	5.00	1.00	0.00
........................................................TTGGGATTTTTTATATCAGCAG............................................................................................	22	1	6.00	0.00	2.00	4.00	0.00
......................................................GGCTGGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
......................................................GGGTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	6.00	0.00	4.00	2.00	0.00
......................................................GGTTGTGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	6.00	0.00	3.00	3.00	0.00
........................................................TTGGGATTTTTTAGATCAGA..............................................................................................	20	1	6.00	0.00	5.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCAGT..............................................................................................	20	1	6.00	0.00	4.00	2.00	0.00
......................................................GGGTGGGATTTTTTAGATCAG...............................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
.........................................................TGTGATTTTTTAGATCAGCAGT...........................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
.........................................................TGTGATTTTTTAGATCAGCAG............................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCATCA.............................................................................................	21	1	5.00	0.00	3.00	2.00	0.00
........................................................TTGGGATTTTTTAGATCAGCC.............................................................................................	21	1	5.00	0.00	1.00	4.00	0.00
.........................................................TGGGATTTTTTAGATCAGCATT...........................................................................................	22	1	5.00	0.00	2.00	3.00	0.00
......................................................GGTTGGGATTTTTTAGATAAGC..............................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................TTGGGGTTTTTTAGATCAGCAG............................................................................................	22	1	5.00	0.00	2.00	3.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCC.......................................	19	1	5.00	0.00	5.00	0.00	0.00
......................................................GGTTGGTATTTTTTAGATCAGC..............................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................TTTGGATTTTTTAGATCAGCA.............................................................................................	21	1	5.00	0.00	2.00	3.00	0.00
.........................................................TGGGCTTTTTTAGATCAGCAG............................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
......................................................GGTTGGGAxTTTTTAGATCAGC..............................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
.........................................................TGGGATTTTTTATATCAGCAGT...........................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGCT.............................................................................................	23	1	5.00	0.00	2.00	3.00	0.00
........................................................TTGGGATTTTTTCGATCAGCAG............................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
.........................................................TGGGATTTTTTAGATCAGTAG............................................................................................	21	1	4.00	1.00	3.00	0.00	0.00
.........................................................TGGGATTTTTTAGATCATCAGT...........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................GTTTGGATTTTTTAGATCAGC..............................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
........................................................TTGGGATTTTTTCGATCAGC..............................................................................................	20	1	4.00	1.00	2.00	1.00	0.00
......................................................GGATGGGATTTTTTAGATCAGC..............................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
.........................................................TTGGATTTTTTAGATCAGC..............................................................................................	19	2	2.00	0.00	2.00	0.00	0.00
......................................................TGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCACC..............................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCAGCCG............................................................................................	22	1	4.00	0.00	1.00	3.00	0.00

droBip1

T-CGAATC---CA-------------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT--ATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGAT------

Size

Hit Count

Total Norm

dp4

C-TCAATT---GG-------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT--ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-AA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	1090.00	13.00	0.00	1074.00	3.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	1005.00	5.00	1.00	999.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	778.00	12.00	0.00	754.00	12.00
......................................................AGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	477.00	0.00	0.00	477.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	457.00	3.00	0.00	454.00	0.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	436.00	1.00	0.00	434.00	1.00
......................................................AGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	384.00	3.00	0.00	381.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	278.00	3.00	0.00	275.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	216.00	3.00	0.00	213.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	152.00	0.00	0.00	152.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	107.00	0.00	0.00	107.00	0.00
......................................................AGTTGGGATTTTTTAGATCA................................................................................................	20	1	67.00	1.00	0.00	65.00	1.00
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	1	44.00	0.00	0.00	44.00	0.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	39.00	1.00	0.00	38.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	1	28.00	0.00	0.00	28.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................	23	1	24.00	1.00	0.00	23.00	0.00
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	1	24.00	0.00	0.00	24.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	1	23.00	0.00	0.00	23.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	19.00	0.00	0.00	19.00	0.00
.......................................................GTTGGGATTTTTTAGATCAG...............................................................................................	20	1	18.00	0.00	0.00	18.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	17.00	0.00	0.00	17.00	0.00
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	1	14.00	0.00	0.00	14.00	0.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	13.00	0.00	0.00	13.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGC..............................................................................................	22	1	13.00	0.00	0.00	13.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	13.00	0.00	0.00	13.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	11.00	0.00	0.00	11.00	0.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	11.00	0.00	0.00	11.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCT.............................................................................................	23	1	10.00	0.00	0.00	10.00	0.00
......................................................AGTTGGGATTTTTTATATCAGC..............................................................................................	22	1	9.00	0.00	0.00	9.00	0.00
........................................................TTAGGATTTTTTAGATCAGCAG............................................................................................	22	1	8.00	0.00	0.00	8.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAGT...........................................................................................	25	1	8.00	0.00	0.00	8.00	0.00
......................................................AGGTGGGATTTTTTAGATCAG...............................................................................................	21	1	7.00	0.00	0.00	7.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	7.00	0.00	0.00	7.00	0.00
......................................................AGCTGGGATTTTTTAGATCAG...............................................................................................	21	1	7.00	0.00	0.00	7.00	0.00
........................................................TTGGGATTTTTTAGATAAGC..............................................................................................	20	1	7.00	0.00	0.00	7.00	0.00
...............................................................................TATTGCTATACAGCCGT--ATTAAT..................................................................	23	1	7.00	0.00	0.00	7.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACAT..................................	23	1	6.00	0.00	0.00	6.00	0.00
......................................................AGCTGGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	0.00	6.00	0.00
......................................................AGATGGGATTTTTTAGATCAGCA.............................................................................................	23	1	6.00	0.00	0.00	6.00	0.00
......................................................AGTTGGGATTTTTTAGATCATCA.............................................................................................	23	1	5.00	0.00	0.00	5.00	0.00
......................................................AGTTGGGATTTTTTAGATC.................................................................................................	19	1	5.00	0.00	0.00	4.00	1.00
......................................................AGTTGGGATTTTTTAGATCAGCAT............................................................................................	24	1	5.00	0.00	0.00	5.00	0.00
.......................................................GTTGGGATTTTTTAGATCA................................................................................................	19	1	5.00	0.00	0.00	5.00	0.00
........................................................TTCGGATTTTTTAGATCAGCAG............................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	1	5.00	0.00	0.00	5.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGA...........................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
........................................................TTGGGAGTTTTTAGATCAGC..............................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGGTTTTTTAGATCAGC..............................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
......................................................AGATGGGATTTTTTAGATCAGCAG............................................................................................	24	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGATTTTTTAGGTCAGCA.............................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCAGCT.............................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
......................................................AGATGGGATTTTTTAGATCAGC..............................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTTT.........................................................................................	25	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCAGA..............................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
.........................................................TGAGATTTTTTAGATCAGCAGT...........................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCATCAG............................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................TTAGGATTTTTTAGATCAGC..............................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................TTGAGATTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAA............................................................................................	24	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTTAGGATTTTTTAGATCAGC..............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTTGGGATTTTTTAAATCAGC..............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................TTGGGATTTTTTAGATTAGCAG............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................TGGGGATTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
........................................................TTGGGATTTTTTAGATCAGCCG............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................TTGGGATTTTTTAGCTCAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCC.......................................	19	1	3.00	0.00	0.00	3.00	0.00
........................................................TTGGGTTTTTTTAGATCAGCA.............................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
........................................................TTGGGATTTTTTAGATCACCAG............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCATC..............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
.........................................................TGAGATTTTTTAGATCAGCAG............................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGT..............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................GTTGGGATTTTTTAGATCATC..............................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
........................................................TTCGGATTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCACC..............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00

droPer1

C-TCAATT---GG-------------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT--ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACAAT-AA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	2871.00	27.00	0.00	1329.00	1515.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	1629.00	13.00	0.00	745.00	866.00	5.00
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	1534.00	7.00	0.00	572.00	947.00	8.00
......................................................AGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	1372.00	3.00	0.00	637.00	732.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	1313.00	12.00	0.00	761.00	540.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	1011.00	18.00	0.00	424.00	569.00	0.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	892.00	2.00	0.00	328.00	562.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	715.00	4.00	0.00	289.00	422.00	0.00
......................................................AGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	677.00	11.00	0.00	243.00	423.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	579.00	11.00	0.00	287.00	281.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	320.00	3.00	0.00	147.00	170.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	1	166.00	0.00	0.00	81.00	85.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	1	126.00	0.00	0.00	49.00	77.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	1	103.00	0.00	0.00	39.00	64.00	0.00
......................................................AGTTGGGATTTTTTAGATCA................................................................................................	20	1	100.00	2.00	0.00	26.00	72.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	75.00	2.00	0.00	30.00	43.00	0.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	51.00	0.00	0.00	17.00	34.00	0.00
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	1	45.00	0.00	0.00	19.00	26.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGC..............................................................................................	22	1	44.00	0.00	0.00	9.00	35.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAGT...........................................................................................	25	1	43.00	0.00	0.00	23.00	20.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	40.00	0.00	0.00	16.00	24.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	39.00	0.00	0.00	14.00	25.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................	23	1	38.00	0.00	0.00	16.00	22.00	0.00
.......................................................GTTGGGATTTTTTAGATCAG...............................................................................................	20	1	36.00	1.00	0.00	19.00	16.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACAT..................................	23	1	34.00	0.00	0.00	14.00	20.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAT............................................................................................	24	1	30.00	0.00	0.00	12.00	18.00	0.00
........................................................TTGGGATTTTTTAGATCATCAG............................................................................................	22	1	29.00	0.00	0.00	8.00	21.00	0.00
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	1	29.00	0.00	0.00	15.00	14.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACA...................................	22	1	25.00	0.00	0.00	7.00	18.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCT.............................................................................................	23	1	24.00	0.00	0.00	4.00	20.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	22.00	0.00	0.00	6.00	16.00	0.00
......................................................AGTTGGGATTTTTTATATCAGC..............................................................................................	22	1	22.00	0.00	0.00	8.00	14.00	0.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	22.00	0.00	0.00	8.00	14.00	0.00
......................................................AGTTGGGATTTTTTAGATCATC..............................................................................................	22	1	20.00	0.00	0.00	4.00	16.00	0.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	19.00	0.00	0.00	4.00	15.00	0.00
......................................................AGGTGGGATTTTTTAGATCAG...............................................................................................	21	1	18.00	0.00	0.00	0.00	18.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	18.00	0.00	0.00	2.00	16.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGA...........................................................................................	22	1	17.00	0.00	0.00	7.00	10.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCC.......................................	19	1	16.00	0.00	0.00	6.00	10.00	0.00
......................................................AGATGGGATTTTTTAGATCAGCA.............................................................................................	23	1	16.00	0.00	0.00	3.00	13.00	0.00
........................................................TTGGGGTTTTTTAGATCAGCAG............................................................................................	22	1	15.00	0.00	0.00	3.00	12.00	0.00
...............................................................................TATTGCTATACAGCCGT--ATTAAT..................................................................	23	1	15.00	0.00	0.00	7.00	8.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	15.00	0.00	0.00	3.00	12.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGC...........................................................................................	23	1	13.00	0.00	0.00	7.00	6.00	0.00
......................................................AGTTGGGATTTTTTAGATCATCAG............................................................................................	24	1	13.00	0.00	0.00	4.00	9.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAC............................................................................................	22	1	13.00	0.00	0.00	4.00	9.00	0.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	1	13.00	0.00	0.00	4.00	9.00	0.00
......................................................AGTTGAGATTTTTTAGATCAGCAG............................................................................................	24	1	12.00	0.00	0.00	12.00	0.00	0.00
........................................................TTGGGATTTTTTAGATAAGCAG............................................................................................	22	1	12.00	0.00	0.00	0.00	12.00	0.00
........................................................TTGGGATTTTTTAGATCACCAG............................................................................................	22	1	12.00	0.00	0.00	5.00	7.00	0.00
......................................................AGTTGGGATTTTTTAGATCATCA.............................................................................................	23	1	11.00	0.00	0.00	2.00	9.00	0.00
........................................................TTGGGATTTTTTAGATCAGCT.............................................................................................	21	1	11.00	1.00	0.00	0.00	10.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGC...........................................................................................	22	1	11.00	0.00	0.00	3.00	8.00	0.00
.......................................................GTTGGGATTTTTTAGATCATC..............................................................................................	21	1	11.00	0.00	0.00	2.00	9.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAGA...........................................................................................	25	1	11.00	0.00	0.00	4.00	7.00	0.00
.........................................................TGGGAGTTTTTAGATCAGCAGT...........................................................................................	22	1	11.00	0.00	0.00	4.00	7.00	0.00
........................................................TTGGGATTTTTTAGATCATCA.............................................................................................	21	1	11.00	0.00	0.00	5.00	6.00	0.00
.......................................................GTTGGGATTTTTTAGATCA................................................................................................	19	1	11.00	0.00	0.00	4.00	7.00	0.00
......................................................AGTTGAGATTTTTTAGATCAGC..............................................................................................	22	1	11.00	0.00	0.00	10.00	1.00	0.00
......................................................AGATGGGATTTTTTAGATCAG...............................................................................................	21	1	11.00	0.00	0.00	4.00	7.00	0.00
........................................................TTGGGATTTTTTAGATCAGTAG............................................................................................	22	1	10.00	0.00	0.00	1.00	9.00	0.00
.......................................................GGTGGGATTTTTTAGATCAGC..............................................................................................	21	1	10.00	0.00	0.00	2.00	8.00	0.00
........................................................TTGGGCTTTTTTAGATCAGC..............................................................................................	20	1	10.00	0.00	0.00	4.00	6.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAA.....................................	20	1	10.00	0.00	0.00	4.00	6.00	0.00
........................................................TTGGGATTTTTTATATCAGCAG............................................................................................	22	1	9.00	0.00	0.00	2.00	7.00	0.00
........................................................TTGGGATTTTTTAGATCACC..............................................................................................	20	1	9.00	0.00	0.00	3.00	6.00	0.00
.........................................................TGGGATTTTTTAGATAAGCAGT...........................................................................................	22	1	9.00	0.00	0.00	2.00	7.00	0.00
......................................................AGCTGGGATTTTTTAGATCAGC..............................................................................................	22	1	9.00	0.00	0.00	3.00	6.00	0.00
......................................................AGTTGGGATTTTTTATATCAGCA.............................................................................................	23	1	8.00	0.00	0.00	4.00	4.00	0.00
......................................................AGTTGGGATTTTTTATATCAG...............................................................................................	21	1	8.00	0.00	0.00	2.00	6.00	0.00
........................................................TTGGGCTTTTTTAGATCAGCAG............................................................................................	22	1	8.00	0.00	0.00	2.00	6.00	0.00
........................................................TTGGGATTTTTTAGCTCAGC..............................................................................................	20	1	8.00	0.00	0.00	4.00	4.00	0.00
........................................................TTGAGATTTTTTAGATCAGCAG............................................................................................	22	1	8.00	0.00	0.00	7.00	1.00	0.00
........................................................TTGGGCTTTTTTAGATCAGCA.............................................................................................	21	1	8.00	0.00	0.00	3.00	5.00	0.00
......................................................AGTTGGGGTTTTTTAGATCAGCA.............................................................................................	23	1	7.00	0.00	0.00	2.00	5.00	0.00
......................................................AGGTGGGATTTTTTATATCAGC..............................................................................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
........................................................TTGGGATTTTTTAGATCAGCCG............................................................................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
......................................................AGTTGGGGTTTTTTAGATCAGCAG............................................................................................	24	1	7.00	0.00	0.00	0.00	7.00	0.00
........................................................TTGGGATTTTTTAGATCAGCGG............................................................................................	22	1	7.00	0.00	0.00	4.00	3.00	0.00
......................................................AGTTGGGATTTTTTATATCAGCAG............................................................................................	24	1	7.00	0.00	0.00	5.00	2.00	0.00
........................................................TTGGGATTTTTTAGATCAGCG.............................................................................................	21	1	7.00	0.00	0.00	3.00	4.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAC............................................................................................	24	1	7.00	0.00	0.00	3.00	4.00	0.00
........................................................TTGGGGTTTTTTAGATCAGC..............................................................................................	20	1	7.00	0.00	0.00	0.00	7.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAA............................................................................................	24	1	7.00	0.00	0.00	3.00	4.00	0.00
.......................................................GCTGGGATTTTTTAGATCAGC..............................................................................................	21	1	7.00	0.00	0.00	4.00	3.00	0.00
........................................................TTGGGATTTTTTAGATCTGCAG............................................................................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
......................................................AGATGGGATTTTTTAGATCAGC..............................................................................................	22	1	7.00	0.00	0.00	1.00	6.00	0.00
........................................................TTGGGGTTTTTTAGATCAGCA.............................................................................................	21	1	7.00	0.00	0.00	2.00	5.00	0.00
........................................................TTGGGAGTTTTTAGATCAGCAG............................................................................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
......................................................AGTTGGGATTTTTTAGATCACC..............................................................................................	22	1	7.00	0.00	0.00	0.00	7.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAAC....................................	21	1	6.00	0.00	0.00	2.00	4.00	0.00
.........................................................TGGGATTTTTTAGATCATCAGT...........................................................................................	22	1	6.00	0.00	0.00	3.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCACCAG............................................................................................	24	1	6.00	0.00	0.00	3.00	3.00	0.00
................................................................................................................TACTGGCCTACTAAGTCCCAACT...................................	23	1	6.00	0.00	0.00	3.00	3.00	0.00
......................................................TGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	1.00	0.00	1.00	4.00	0.00
.........................................................TGGGATTTTTTATATCAGCAGT...........................................................................................	22	1	6.00	0.00	0.00	2.00	4.00	0.00
........................................................GTGGGATTTTTTAGATCAGC..............................................................................................	20	1	6.00	0.00	0.00	1.00	5.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCA.............................................................................................	22	1	6.00	2.00	0.00	2.00	2.00	0.00

droWil1

T-TTAATT---AA-----------TC------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACA-AGTCAAAAATTTAT-TATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACG-AAAT------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	18331.00	7.00	4.00	3610.00	14710.00
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	5563.00	1.00	2.00	2429.00	3131.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	2252.00	8.00	1.00	1692.00	551.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	819.00	2.00	1.00	271.00	545.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	705.00	8.00	1.00	696.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	433.00	2.00	1.00	250.00	180.00
................................................................................................................TACTGGCCTACTAAGTCCCAAC....................................	22	1	300.00	0.00	0.00	212.00	88.00
......................................................GGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	282.00	0.00	0.00	223.00	59.00
................................................................................................................TACTGGCCTACTAAGTCCCA......................................	20	1	281.00	0.00	0.00	265.00	16.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	251.00	1.00	1.00	247.00	2.00
......................................................GGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	190.00	0.00	0.00	182.00	8.00
........................................................TTGGGATTTTTTAGATCAGCT.............................................................................................	21	1	153.00	0.00	0.00	9.00	144.00
................................................................................................................TACTGGCCTACTAAGTCCCAA.....................................	21	1	125.00	0.00	0.00	120.00	5.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	116.00	1.00	0.00	60.00	55.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	89.00	0.00	1.00	51.00	37.00
......................................................GGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	87.00	0.00	0.00	74.00	13.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	69.00	0.00	0.00	24.00	45.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	67.00	1.00	0.00	37.00	29.00
................................................................................................................TACTGGCCTACTAAGTCCC.......................................	19	1	61.00	0.00	0.00	15.00	46.00
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	1	49.00	0.00	0.00	44.00	5.00
......................................................GGTTGGGATTTTTTAGATC.................................................................................................	19	1	48.00	0.00	0.00	28.00	20.00
........................................................TTGGGATTTTTTGGATCAGC..............................................................................................	20	1	48.00	0.00	0.00	3.00	45.00
......................................................GGTTGGGATTTTTTAGATCA................................................................................................	20	1	46.00	0.00	0.00	43.00	3.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	41.00	0.00	0.00	18.00	23.00
........................................................TTGGGATTTTTTAGATCAGCAC............................................................................................	22	1	40.00	0.00	0.00	10.00	30.00
................................................................................................................TACTGGCCTACTAAGTCCCAACT...................................	23	1	33.00	0.00	0.00	17.00	16.00
........................................................TTGGGATTTTTTAGATCAGCC.............................................................................................	21	1	32.00	0.00	0.00	8.00	24.00
........................................................TTGGGATTTTTTAGATCAAC..............................................................................................	20	1	32.00	0.00	0.00	14.00	18.00
........................................................TTGGGAxTTTTTAGATCAGC..............................................................................................	19	1	24.00	0.00	0.00	14.00	10.00
........................................................TTGGGATTTTTTAGATCAGT..............................................................................................	20	2	11.00	0.00	0.00	6.00	5.00
........................................................TTGGGATTTTTTAGATCAGA..............................................................................................	20	1	22.00	0.00	0.00	15.00	7.00
......................................................GTTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	20.00	0.00	0.00	2.00	18.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	20.00	0.00	0.00	6.00	14.00
......................................................GGTTGGGATTTTTTAGATCAGCAA............................................................................................	24	1	19.00	0.00	0.00	18.00	1.00
........................................................TTGGGGTTTTTTAGATCAGC..............................................................................................	20	1	18.00	0.00	0.00	5.00	13.00
.........................................................TGGGATTTTTTAGATCAGCAGA...........................................................................................	22	1	18.00	0.00	1.00	17.00	0.00
........................................................CTGGGATTTTTTAGATCAGC..............................................................................................	20	1	18.00	0.00	0.00	13.00	5.00
........................................................TTTGGATTTTTTAGATCAGC..............................................................................................	20	1	18.00	0.00	0.00	3.00	15.00
........................................................TTGGGATTTTTTAGATCAGCAGG...........................................................................................	23	1	18.00	0.00	0.00	6.00	12.00
........................................................TTGGGATTTTTTAGATCAGCAGC...........................................................................................	23	1	18.00	0.00	0.00	1.00	17.00
........................................................TTGGGATTTTTTAGGTCAGC..............................................................................................	20	1	16.00	0.00	0.00	5.00	11.00
........................................................TTGGGATTTTTTAGATCAGG..............................................................................................	20	1	16.00	0.00	0.00	0.00	16.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACA...................................	22	1	16.00	0.00	0.00	15.00	1.00
......................................................GGTTGGGATTTTTTAGATAAGC..............................................................................................	22	1	15.00	0.00	0.00	14.00	1.00
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	1	15.00	0.00	0.00	15.00	0.00
........................................................TTGGGATTTTTTAGATAAGC..............................................................................................	20	1	13.00	0.00	0.00	10.00	3.00
........................................................TTGGGATTTTTTCGATCAGC..............................................................................................	20	1	12.00	0.00	0.00	3.00	9.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	12.00	0.00	0.00	0.00	12.00
........................................................TTGGGATTTTTTAGATCGGC..............................................................................................	20	1	12.00	0.00	0.00	1.00	11.00
........................................................TTGGGATTTTTTAGATCAGCACT...........................................................................................	23	1	12.00	0.00	0.00	0.00	12.00
......................................................GGTTGGGATTTTTTAGATCAGCAGT...........................................................................................	25	1	12.00	0.00	0.00	12.00	0.00
........................................................TTGGGATTTTTTAGATTAGC..............................................................................................	20	1	11.00	0.00	0.00	8.00	3.00
........................................................TTGGGATTTTTTAGACCAGC..............................................................................................	20	1	11.00	0.00	0.00	9.00	2.00
......................................................GGTTGGGCTTTTTTAGATCAGC..............................................................................................	22	1	11.00	0.00	0.00	10.00	1.00
........................................................TTGGGATTTTTTAGCTCAGC..............................................................................................	20	1	11.00	0.00	0.00	9.00	2.00
................................................................................................................TACTGGCCTACTAAGTCCCAAT....................................	22	1	11.00	0.00	0.00	9.00	2.00
......................................................GGTTGGGATTTTTTAGATCATC..............................................................................................	22	1	11.00	0.00	0.00	2.00	9.00
......................................................GGTTGGGATTTTTTAGATCAGA..............................................................................................	22	1	11.00	0.00	0.00	9.00	2.00
......................................................GGTTGGGATTTTATAGATCAGC..............................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
........................................................TTGGGATTTTTTAGATAAGCAG............................................................................................	22	1	10.00	0.00	0.00	10.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCCCAACAT..................................	23	1	10.00	0.00	0.00	8.00	2.00
......................................................GGTTGGGATTTTTTAGATCAAC..............................................................................................	22	1	10.00	0.00	0.00	7.00	3.00
......................................................TGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	10.00	0.00	0.00	8.00	2.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	10.00	0.00	0.00	5.00	5.00
........................................................TTGGGATTTTTTAGATCCGC..............................................................................................	20	1	9.00	0.00	0.00	7.00	2.00
........................................................TTGGGACTTTTTAGATCAGC..............................................................................................	20	1	9.00	0.00	0.00	5.00	4.00
.........................................................TTGGATTTTTTAGATCAGC..............................................................................................	19	1	9.00	0.00	0.00	3.00	6.00
......................................................GGCTGGGATTTTTTAGATCAGC..............................................................................................	22	1	9.00	0.00	0.00	8.00	1.00
........................................................TTGGGCTTTTTTAGATCAGC..............................................................................................	20	1	9.00	0.00	0.00	2.00	7.00
........................................................TTGTGATTTTTTAGATCAGC..............................................................................................	20	1	9.00	0.00	0.00	3.00	6.00
......................................................GGGTGGGATTTTTTAGATCAGC..............................................................................................	22	1	9.00	0.00	0.00	7.00	2.00
........................................................TTGGGATTTTTTAGATCAGCGG............................................................................................	22	1	8.00	0.00	0.00	5.00	3.00
......................................................GGTTGGGATTTTTTAGATCAGT..............................................................................................	22	1	8.00	0.00	0.00	5.00	3.00
........................................................TTGGGATTTTTTGGATCAGCAG............................................................................................	22	1	8.00	0.00	0.00	3.00	5.00
........................................................TTCGGATTTTTTAGATCAGC..............................................................................................	20	1	8.00	0.00	0.00	2.00	6.00
........................................................TTGGTATTTTTTAGATCAGC..............................................................................................	20	1	8.00	0.00	0.00	3.00	5.00
........................................................TTGGGATTTTTTAGATCAGCATA...........................................................................................	23	1	8.00	0.00	0.00	2.00	6.00
......................................................GGTTGGGAxTTTTTAGATCAGC..............................................................................................	21	1	8.00	0.00	0.00	3.00	5.00
........................................................TTGGGATTTTTTAGATCAACAG............................................................................................	22	1	8.00	0.00	0.00	8.00	0.00
........................................................TTGAGATTTTTTAGATCAGC..............................................................................................	20	1	8.00	0.00	0.00	6.00	2.00
........................................................TTGGGATTTTTTAGATCAGCATT...........................................................................................	23	1	8.00	0.00	0.00	3.00	5.00
........................................................TTAGGATTTTTTAGATCAGC..............................................................................................	20	1	8.00	0.00	0.00	2.00	6.00
......................................................GGTTGGGATTTTCTAGATCAGC..............................................................................................	22	1	8.00	0.00	0.00	5.00	3.00
.......................................................CTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	8.00	0.00	0.00	3.00	5.00
........................................................TTGGGATTTTTTAGATCACC..............................................................................................	20	1	7.00	0.00	0.00	6.00	1.00
......................................................CGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	7.00	0.00	0.00	6.00	1.00
.........................................................TGGGCTTTTTTAGATCAGCAGT...........................................................................................	22	1	7.00	0.00	0.00	7.00	0.00
........................................................ATGGGATTTTTTAGATCAGCAG............................................................................................	22	1	7.00	0.00	0.00	7.00	0.00
......................................................GGTCGGGATTTTTTAGATCAGC..............................................................................................	22	1	7.00	0.00	0.00	6.00	1.00
........................................................TTGGGATTTTTTAGATCAGCCG............................................................................................	22	1	7.00	0.00	0.00	6.00	1.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	1	7.00	0.00	0.00	6.00	1.00
......................................................GGTTTGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	0.00	1.00	5.00
......................................................AGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	6.00	0.00	0.00	4.00	2.00

droVir3

C-TTAATG---GT-------------------TGTAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGT--AT-CGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAGT-A-TAAC------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................................AGTTGGGATTTTTTAGATCAGC..............................................................................................	22	2	4252.00	2.50	549.50	0.00	14.00	3686.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	2	886.00	1.50	199.50	0.00	4.00	681.00
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	2	790.50	0.50	208.50	0.00	7.50	574.00
......................................................AGTTGGGATTTTTTAGATCAG...............................................................................................	21	2	453.50	2.50	435.50	0.00	0.00	15.50
................................................................................................................TACTGGCCTACTAAGTCTC.......................................	19	2	303.00	0.00	3.00	0.00	3.00	297.00
.................................................................................................................ACTGGCCTACTAAGTCTC.......................................	18	2	269.00	0.00	0.50	0.00	0.50	268.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	2	255.50	2.00	221.00	0.00	0.00	32.50
................................................................................................................TACTGGCCTACTAAGTCTCAAT....................................	22	2	217.50	0.50	33.50	0.00	0.00	183.50
......................................................AGTTGGGATTTTTTAGATCA................................................................................................	20	2	177.50	0.50	122.50	0.00	0.00	54.50
......................................................AGTTGGGATTTTTTAGATC.................................................................................................	19	2	154.00	0.00	8.00	0.00	0.00	146.00
......................................................AGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	2	113.50	0.00	82.00	0.00	0.00	31.50
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	2	110.50	1.00	109.50	0.00	0.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	2	93.50	1.50	92.00	0.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCAG............................................................................................	23	2	85.50	0.50	79.00	0.00	0.00	6.00
......................................................AGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	2	76.50	0.00	73.00	0.00	0.00	3.50
.......................................................GTTGGGATTTTTTAGATCAGCA.............................................................................................	22	2	74.50	0.00	62.00	0.00	0.00	12.50
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	2	69.50	0.50	53.50	0.00	0.00	15.50
.......................................................GTTGGGATTTTTTAGATCAG...............................................................................................	20	2	68.50	0.50	66.50	0.00	0.00	1.50
......................................................AGTTGGGATTTTTTAGATCAGCT.............................................................................................	23	2	44.00	0.00	18.00	0.00	0.00	26.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	2	44.00	1.00	26.50	0.00	1.00	15.50
................................................................................................................TACTGGCCTACTAAGTCTCA......................................	20	2	34.50	0.00	17.00	0.00	1.00	16.50
................................................................................................................TACTGGCCTACTAAGTCTCAA.....................................	21	2	29.00	0.00	12.50	0.00	0.00	16.50
......................................................AGGTGGGATTTTTTAGATCAGC..............................................................................................	22	2	16.50	0.00	16.50	0.00	0.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCTCAAT....................................	21	2	15.00	0.00	3.50	0.00	0.50	11.00
.......................................................GTTGGGATTTTTTAGATCA................................................................................................	19	2	11.00	0.00	9.50	0.00	0.00	1.50
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	2	11.00	0.00	7.00	0.00	0.00	4.00
......................................................AGTTGGGATTTTTTAGATCAGT..............................................................................................	22	2	11.00	0.00	6.00	0.00	0.00	5.00
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	2	10.00	0.00	0.50	0.00	3.50	6.00
................................................................................................................TACTGGCCTACTAAGTCTCAATT...................................	23	2	10.00	0.00	0.50	0.00	0.00	9.50
........................................................TTGGGATTTTTTAGATCAGCT.............................................................................................	21	2	9.50	0.00	0.50	0.00	0.00	9.00
......................................................AGGTGGGATTTTTTAGATCAG...............................................................................................	21	2	8.50	0.00	8.50	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGG..............................................................................................	22	2	8.00	0.00	0.00	0.00	0.00	8.00
................................................................................................................TACTGGCCTACTAAGTCTCAAC....................................	22	2	8.00	0.00	0.00	0.00	0.00	8.00
.........................................................TGGGATTTTTTAGATCAGCA.............................................................................................	20	2	7.50	0.00	7.50	0.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATC.................................................................................................	18	2	7.50	0.00	0.00	0.00	0.00	7.50
......................................................AGTTGGGATTTTTTAGATCAAC..............................................................................................	22	2	6.50	0.00	0.00	0.00	0.00	6.50
......................................................AGATGGGATTTTTTAGATCAGC..............................................................................................	22	2	6.00	0.00	6.00	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGAT..................................................................................................	18	2	6.00	0.00	2.50	0.00	0.00	3.50
......................................................AGTTGGGAxTTTTTAGATCAGC..............................................................................................	21	2	5.50	0.00	2.00	0.00	0.00	3.50
.................................................................................................................ACTGGCCTACTAAGTCTCA......................................	19	2	5.50	0.00	2.00	0.00	0.00	3.50
.......................................................GGTGGGATTTTTTAGATCAGC..............................................................................................	21	2	5.00	0.00	5.00	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGATCATC..............................................................................................	22	2	5.00	0.00	4.00	0.00	0.00	1.00
......................................................AGTTGGGATTTTTTAGATCCGC..............................................................................................	22	2	5.00	0.00	0.00	0.00	0.00	5.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	2	5.00	0.00	4.00	0.00	0.00	1.00
......................................................AGTTGGGATTTTTTAGATCAGA..............................................................................................	22	2	4.50	0.00	3.00	0.00	0.00	1.50
......................................................AGTTGGGATTTTTTAGATAAGC..............................................................................................	22	2	4.50	0.00	1.50	0.00	0.00	3.00
......................................................AGTTGGGATTTTTTATATCAGC..............................................................................................	22	2	4.50	0.00	4.50	0.00	0.00	0.00
......................................................AGATGGGATTTTTTAGATCAG...............................................................................................	21	2	4.50	0.00	4.50	0.00	0.00	0.00
.........................................................TGGGATTTTTTAGATCAGC..............................................................................................	19	2	4.50	0.00	4.50	0.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	2	4.00	0.00	3.50	0.00	0.00	0.50
...................................................................................................................TGGCCTACTAAGTCTCAATATT.................................	22	2	4.00	0.00	1.00	0.00	0.00	3.00
......................................................AGGTGGGATTTTTTAGATCA................................................................................................	20	2	4.00	0.00	4.00	0.00	0.00	0.00
.......................................................GTTGGGATTTTTTATATCAGC..............................................................................................	21	2	4.00	0.00	4.00	0.00	0.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCTCAATT...................................	22	2	4.00	0.00	0.00	0.00	0.00	4.00
........................................................TTGGGACTTTTTAGATCAGC..............................................................................................	20	2	3.50	0.00	1.50	0.00	0.00	2.00
.................................................................................................................ACTGGCCTCCTAAGTCTC.......................................	18	2	3.50	0.00	0.00	0.00	0.00	3.50
.......................................................GTTGGGATTTTTTAGATCACC..............................................................................................	21	2	3.50	0.00	3.00	0.00	0.00	0.50
......................................................TGTTGGGATTTTTTAGATCAGC..............................................................................................	22	2	3.50	0.00	2.50	0.00	0.00	1.00
........................................................TTGGGATTTTTTAGATCAGCAC............................................................................................	22	2	3.50	0.00	2.50	0.00	0.00	1.00
......................................................AGTTGGAATTTTTTAGATCAGC..............................................................................................	22	2	3.50	0.00	2.50	0.00	0.00	1.00
.................................................................................................................ACTGGCCTACTAAGTCTCAATA...................................	22	2	3.50	0.00	0.50	0.00	0.00	3.00
......................................................AGCTGGGATTTTTTAGATCAGC..............................................................................................	22	2	3.50	0.00	0.00	0.00	0.00	3.50
......................................................AGTTGGGATTTTTTAGATT.................................................................................................	19	2	3.50	0.00	3.00	0.00	0.00	0.50
......................................................AGGTGGGTTTTTTTAGATCAG...............................................................................................	21	2	3.00	0.00	3.00	0.00	0.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCT.............................................................................................	22	2	3.00	0.00	0.00	0.00	0.00	3.00
......................................................AGTTGGGATTTTTTAGGTCAGC..............................................................................................	22	2	3.00	0.00	0.50	0.00	0.00	2.50
.......................................................GGTGGGATTTTTTAGATCAGCAG............................................................................................	23	2	3.00	0.00	3.00	0.00	0.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	2	3.00	0.00	1.50	0.00	0.00	1.50
......................................................AGTTGGGATTTTTTAGATCAT...............................................................................................	21	2	3.00	0.00	3.00	0.00	0.00	0.00
........................................................TTGGGCTTTTTTAGATCAGCAG............................................................................................	22	2	3.00	0.00	3.00	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCG.............................................................................................	23	2	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................GTTGGGATTTTTTAGATCAGG..............................................................................................	21	2	2.50	0.00	0.00	0.00	0.00	2.50
.......................................................TTTGGGATTTTTTAGATCAGC..............................................................................................	21	2	2.50	0.00	0.50	0.00	0.00	2.00
......................................................AGTTGGGATTTTTTAGACCAGC..............................................................................................	22	2	2.50	0.00	0.50	0.00	0.00	2.00
......................................................AGTTGGGATTTTTTAGATCAGCAT............................................................................................	24	2	2.50	0.00	2.50	0.00	0.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................	23	2	2.50	0.00	2.50	0.00	0.00	0.00
.......................................................GGTGGGATTTTTTAGATCAG...............................................................................................	20	2	2.50	0.00	2.50	0.00	0.00	0.00
......................................................AGTTGGGGTTTTTTAGATCA................................................................................................	20	2	2.50	0.00	2.50	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTATATCAG...............................................................................................	21	2	2.50	0.00	2.50	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGCTCAGC..............................................................................................	22	2	2.50	0.00	0.50	0.00	0.00	2.00
......................................................AGTTGGGACTTTTTAGATCAGC..............................................................................................	22	2	2.50	0.00	1.00	0.00	0.00	1.50
......................................................AGTTGGGATCTTTTAGATCAGC..............................................................................................	22	2	2.50	0.00	1.50	0.00	0.00	1.00
.......................................................GTTGGGATTTTTTAGATCAGCAA............................................................................................	23	2	2.50	0.00	2.00	0.00	0.00	0.50
......................................................AGTTGGGGTTTTTTAGATCAGC..............................................................................................	22	2	2.50	0.00	1.50	0.00	0.00	1.00
.......................................................GTTGGGGTTTTTTAGATCAGC..............................................................................................	21	2	2.50	0.00	0.50	0.00	0.00	2.00
......................................................AGTTGGGCTTTTTTAGATCAGC..............................................................................................	22	2	2.50	0.00	1.00	0.00	0.00	1.50
......................................................AGTTGGGATTTTTTAGATCACC..............................................................................................	22	2	2.50	0.00	2.00	0.00	0.00	0.50
......................................................AGATGGGATTTTTTAGATCA................................................................................................	20	2	2.00	0.00	2.00	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCC.............................................................................................	23	2	2.00	0.00	1.00	0.00	0.00	1.00
......................................................AGTTxGGATTTTTTAGATCAGC..............................................................................................	21	2	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................GTTGGGATTTTTTAGATCAAC..............................................................................................	21	2	2.00	0.00	0.50	0.00	0.00	1.50
......................................................AGGTGGGATTTTTTAGATCAGCAG............................................................................................	24	2	2.00	0.00	2.00	0.00	0.00	0.00
......................................................AGTTGGGATTTTTTAAATCAGC..............................................................................................	22	2	2.00	0.00	0.00	0.00	0.00	2.00
......................................................AGTTGGGATTTTTTAGATCGGC..............................................................................................	22	2	2.00	0.00	0.00	0.00	0.00	2.00
......................................................AGTTGGGATTTTTTAGATCTG...............................................................................................	21	2	2.00	0.00	2.00	0.00	0.00	0.00
.......................................................GCTGGGATTTTTTAGATCAGC..............................................................................................	21	2	2.00	0.00	1.50	0.00	0.00	0.50
......................................................AGTTGGGATTTTTTGGATCAG...............................................................................................	21	2	2.00	0.00	2.00	0.00	0.00	0.00
.......................................................CTTGGGATTTTTTAGATCAGC..............................................................................................	21	2	2.00	0.00	1.00	0.00	0.00	1.00
......................................................AGTTGGGATTTTTTAGATCAGCAGT...........................................................................................	25	2	2.00	0.00	1.50	0.00	0.00	0.50

droMoj3

-------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----T--TATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGT-T-CAA-------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................................AGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	2079.00	28.00	1282.00	769.00	0.00
......................................................AGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	1482.00	18.00	867.00	597.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAG............................................................................................	22	1	555.00	9.00	336.00	209.00	1.00
......................................................AGTTGGGATTTTTTAGATCA................................................................................................	20	1	398.00	3.00	242.00	153.00	0.00
........................................................TTGGGATTTTTTAGATCAGC..............................................................................................	20	1	372.00	1.00	230.00	141.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCA.............................................................................................	23	1	177.00	2.00	129.00	46.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAG............................................................................................	24	1	150.00	1.00	82.00	67.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCT.............................................................................................	23	1	147.00	1.00	90.00	56.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAGT...........................................................................................	22	1	140.00	5.00	86.00	49.00	0.00
........................................................TTGGGATTTTTTAGATCAGCA.............................................................................................	21	1	110.00	1.00	73.00	36.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................	23	1	67.00	3.00	37.00	27.00	0.00
................................................................................................................TACTGGCCTACTAAGTCTCAAT....................................	22	1	66.00	0.00	38.00	28.00	0.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	62.00	1.00	36.00	25.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCAG............................................................................................	23	1	47.00	1.00	22.00	24.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGC..............................................................................................	21	1	41.00	1.00	23.00	17.00	0.00
......................................................AGTTGGGATTTTTTAGATCATC..............................................................................................	22	1	37.00	0.00	15.00	22.00	0.00
................................................................................................................TACTGGCCTACTAAGTCTCA......................................	20	1	35.00	0.00	16.00	19.00	0.00
.......................................................GTTGGGATTTTTTAGATCAGCA.............................................................................................	22	1	29.00	0.00	18.00	11.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGT..............................................................................................	22	1	26.00	0.00	16.00	10.00	0.00
......................................................AGTTGGGATTTTTTATATCAG...............................................................................................	21	1	23.00	0.00	8.00	15.00	0.00
......................................................AGTTGGGATTTTTTATATCAGC..............................................................................................	22	1	22.00	0.00	10.00	12.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGC..............................................................................................	22	1	21.00	0.00	14.00	7.00	0.00
........................................................TTGGGATTTTTTAGATCAG...............................................................................................	19	1	20.00	0.00	14.00	6.00	0.00
......................................................AGTTGGGATTTTTTAGATC.................................................................................................	19	1	20.00	0.00	15.00	5.00	0.00
................................................................................................................TACTGGCCTACTAAGTCTCAA.....................................	21	1	18.00	0.00	9.00	9.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCTCAATAT..................................	23	1	17.00	0.00	11.00	6.00	0.00
.......................................................GTTGGGATTTTTTAGATCAG...............................................................................................	20	1	16.00	0.00	8.00	8.00	0.00
......................................................AGTTGGGATTTTTTAGAT..................................................................................................	18	1	15.00	0.00	10.00	5.00	0.00
......................................................AGGTGGGATTTTTTAGATCAG...............................................................................................	21	1	14.00	0.00	6.00	8.00	0.00
......................................................AGATGGGATTTTTTAGATCAGC..............................................................................................	22	1	13.00	0.00	8.00	5.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCTCAATA...................................	22	1	13.00	0.00	7.00	6.00	0.00
......................................................AGTTGGGATTTTTTAGATCCG...............................................................................................	21	1	12.00	0.00	1.00	11.00	0.00
......................................................AGTTGGGGTTTTTTAGATCAGC..............................................................................................	22	1	11.00	0.00	6.00	5.00	0.00
......................................................AGGTGGGATTTTTTAGATCATC..............................................................................................	22	1	10.00	0.00	6.00	4.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCAT............................................................................................	24	1	10.00	0.00	4.00	6.00	0.00
......................................................AGTTGGGATTTTTTAGATCAT...............................................................................................	21	1	10.00	0.00	3.00	7.00	0.00
......................................................AGTTGGGATTCTTTAGATCAGC..............................................................................................	22	1	9.00	0.00	5.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAT............................................................................................	22	1	9.00	0.00	4.00	5.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCTCAAT....................................	21	1	9.00	0.00	4.00	5.00	0.00
......................................................AGTTGGGATTTTTTAGCTCAG...............................................................................................	21	1	8.00	0.00	2.00	6.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGA...........................................................................................	23	1	8.00	0.00	4.00	4.00	0.00
......................................................AGTTGGGATTTTTTAGATCCGC..............................................................................................	22	1	8.00	0.00	0.00	8.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCTCAATT...................................	22	1	8.00	0.00	4.00	4.00	0.00
......................................................AGTTGGGATTTTTTAGATT.................................................................................................	19	1	7.00	0.00	2.00	5.00	0.00
......................................................AGTTGGGAxTTTTTAGATCAGC..............................................................................................	21	1	7.00	0.00	4.00	3.00	0.00
......................................................AGGTGGGATTTTTTAGATCA................................................................................................	20	1	7.00	0.00	1.00	6.00	0.00
......................................................AGTTGGGATTTTTTAGATAAGC..............................................................................................	22	1	7.00	0.00	4.00	3.00	0.00
................................................................................................................TACTGGCCTACTAAGTCTCCAT....................................	22	1	6.00	0.00	0.00	6.00	0.00
......................................................AGGTGGGATTTTTTAGATCAGCT.............................................................................................	23	1	6.00	0.00	4.00	2.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGCTT............................................................................................	24	1	6.00	0.00	4.00	2.00	0.00
......................................................AGTTGGGATTTTTTAGATCAGA..............................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
......................................................AGTTGGGCTTTTTTAGATCAG...............................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
......................................................AGTTGGGCTTTTTTAGATCAGC..............................................................................................	22	1	5.00	0.00	1.00	4.00	0.00
......................................................AGTTGGGATTTTTTAGGTCAGC..............................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
......................................................AGTTGGGATTTTTTACATCAG...............................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCATCAG............................................................................................	22	1	5.00	0.00	1.00	4.00	0.00
........................................................TTGGGATTTTTTAGATCATC..............................................................................................	20	1	5.00	0.00	3.00	2.00	0.00
......................................................AGTTGGGATTTTTTAGCTCAGC..............................................................................................	22	1	5.00	0.00	1.00	4.00	0.00
......................................................GGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	5.00	0.00	2.00	3.00	0.00
......................................................AGTTAGGATTTTTTAGATCAGC..............................................................................................	22	1	5.00	0.00	1.00	4.00	0.00
......................................................AGTTGGGGTTTTTTAGATCAG...............................................................................................	21	1	5.00	0.00	2.00	3.00	0.00
........................................................TTGGGATTTTTTAGATCA................................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
......................................................AGATGGGATTTTTTAGATCAG...............................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
......................................................AGTTGGGATTTTTTGGATCAGC..............................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
......................................................AGTTGAGATTTTTTAGATCAGC..............................................................................................	22	1	4.00	0.00	1.00	3.00	0.00
......................................................AGTTAGGATTTTTTAGATCAG...............................................................................................	21	1	4.00	0.00	1.00	3.00	0.00
......................................................AGTTGGGATTTTTTCGATCAGC..............................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
......................................................AGTTGGGATTTTTTATATCATC..............................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
......................................................AGTTGGGATTTTTTAGATCTG...............................................................................................	21	1	4.00	0.00	3.00	1.00	0.00
......................................................AGCTGGGATTTTTTAGATCAGC..............................................................................................	22	1	4.00	0.00	3.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................	24	1	4.00	0.00	3.00	1.00	0.00
........................................................TTGGGCTTTTTTAGATCAGCAG............................................................................................	22	1	4.00	0.00	3.00	1.00	0.00
......................................................AGTTGGGAGTTTTTAGATCAGC..............................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
......................................................TGTTGGGATTTTTTAGATCAGC..............................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
.................................................................................................................ACTGGCCTACTAAGTCTCAA.....................................	20	1	4.00	0.00	3.00	1.00	0.00
......................................................AGTTGGGATTTTTTAGTTCAGC..............................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................TTGGGATTTTTTATATCAGC..............................................................................................	20	1	4.00	0.00	1.00	3.00	0.00
......................................................AGTTGGGATTTTTTAGATCATCAG............................................................................................	24	1	3.00	0.00	0.00	3.00	0.00
........................................................TTGGGATTTTTTAGATCAGCAA............................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
........................................................TTGGGCTTTTTTAGATCAGC..............................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTTGGGATGTTTTAGATCAG...............................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
......................................................AGTTGGGATTTTTTAGCTCA................................................................................................	20	1	3.00	0.00	2.00	1.00	0.00
......................................................AGTTGGGATTTTTTAGCTCAGCA.............................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
........................................................TTGGGATTTTTTAGATAAGCAG............................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCCGCAG............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................GTTGGGATTTTTTAGATCA................................................................................................	19	1	3.00	0.00	2.00	1.00	0.00
......................................................AGTTGGGATTTTTCAGATCAGC..............................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
......................................................AGTTGGGATTTTTTAGACCAGC..............................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
......................................................AGTTGGGATTTTTTAGATCATCT.............................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
...................................................................................................................TGGCCTACTAAGTCTCAATATT.................................	22	1	3.00	0.00	1.00	2.00	0.00
......................................................AGTTGGGATTTTTTAAATCAGC..............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
......................................................AGTCGGGATTTTTTAGATCAG...............................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
......................................................AGTTGGGATTTTTTAGATCT................................................................................................	20	1	3.00	0.00	2.00	1.00	0.00
......................................................AGTTGGGATCTTTTAGATCAGC..............................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
......................................................AGTTGGGATTTTTTATATCAGCT.............................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
......................................................AGATGGGATTTTTTAGATCAGCT.............................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
........................................................TTGGGATTTTTTAGATCAGCCG............................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
......................................................GGTTGGGATTTTTTAGATCAG...............................................................................................	21	1	3.00	0.00	1.00	2.00	0.00

droGri2

T-ATAACTATCGAGGAAATTTACATAAATGTGCTAAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCT-T--TATCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCA---------------	Size	Hit Count	Total Norm	V109 Male body
.......................................................GTTGGGATTTTTTAGATCAGCA.............................................................................................	22	1	1.00	1.00
.......................................................GTTGGGATTTTTTAGATCAGCAG............................................................................................	23	1	1.00	1.00
.........................................................TGGGATTTTTTAGATCAGCAG............................................................................................	21	1	1.00	1.00

Generated: 04/20/2012 at 05:20:26 EDT

dme-mir-193

chr3L:21567114-21567221 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup