Possible Orthologs for dme-mir-1013

droSim1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3R:26257486-26257576 -

97.8

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................ATAAAAGTATGCCGAACTCG..................	20	1	275.00	2.00	211.00	41.00	21.00
.....................................................ATAAAAGTATGCCGAACTCGCA................	22	1	206.00	11.00	126.00	26.00	43.00
.....................................................ATAAAAGTATGCCGAACTCGC.................	21	1	104.00	4.00	78.00	12.00	10.00
......................................................TAAAAGTATGCCGAACTCGCAGT..............	23	1	100.00	4.00	18.00	10.00	68.00
.....................................................ATAAAAGTATGCCGAACTCGCAG...............	23	1	78.00	48.00	12.00	2.00	16.00
.....................................................ATAAAAGTATGCCGAACTC...................	19	1	24.00	0.00	21.00	2.00	1.00
......................................................TAAAAGTATGCCGAACTCGCA................	21	1	22.00	1.00	14.00	4.00	3.00
.......................................................AAAAGTATGCCGAACTCGCAGT..............	22	1	20.00	0.00	5.00	1.00	14.00
......................................................TAAAAGTATGCCGAACTCGCAG...............	22	1	14.00	8.00	2.00	3.00	1.00
......................................................TAAAAGTATGCCGAACTCGCAGC..............	23	1	13.00	0.00	3.00	2.00	8.00
......................................................TAAAAGTATGCCGAACTCGC.................	20	1	12.00	0.00	8.00	3.00	1.00
......................................................TAAAAGTATGCCGAACTCGCAGG..............	23	1	12.00	0.00	4.00	1.00	7.00
.....................................................ATAAAAGTATGCCGAACTCGCG................	22	1	11.00	0.00	4.00	4.00	3.00
.....................................................ATAAAAGTATGCCGAACTCGCAGT..............	24	1	8.00	1.00	0.00	4.00	3.00
.....................................................ATAAAAGTATGCCGAACTCGCT................	22	1	6.00	0.00	6.00	0.00	0.00
..............................TTAATTAATAGGATCGGCC..........................................	19	1	5.00	0.00	5.00	0.00	0.00
.....................................................ATAAAAGGATGCCGAACTCGCA................	22	1	4.00	1.00	2.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAACT....................	18	1	4.00	0.00	4.00	0.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCAGC..............	24	1	4.00	0.00	1.00	0.00	3.00
........................GTACACTTAATTAATAGGATCGGCC..........................................	25	1	3.00	0.00	3.00	0.00	0.00
.............................CTTAATTAATAGGATCGGCC..........................................	20	1	3.00	0.00	3.00	0.00	0.00
....................................AATAGGATCGGCCGTTAATAA..................................	21	1	3.00	0.00	3.00	0.00	0.00
.......................................................AAAAGTATGCCGAACTCGCAGG..............	22	1	2.00	0.00	0.00	0.00	2.00
.....................................................ATAAAATTATGCCGAACTCG..................	20	1	2.00	0.00	1.00	0.00	1.00
......................................................TAAAATTATGCCGAACTCGC.................	20	1	2.00	0.00	2.00	0.00	0.00
.....................................ATAGGATCGGCCGTTAATAAAAGT..............................	24	1	2.00	0.00	2.00	0.00	0.00
............................ACTTAATTAATAGGATCGGCC..........................................	21	1	2.00	0.00	2.00	0.00	0.00
......................................................TAAAAGTATCCCGAACTCGCAGT..............	23	1	2.00	0.00	2.00	0.00	0.00
.....................................................ATAAAAGTATGCCGAACTGG..................	20	1	2.00	0.00	0.00	2.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCAGG..............	24	1	2.00	0.00	1.00	0.00	1.00
.....................TTCGTACACTTAATTAATAGGATC..............................................	24	1	2.00	0.00	2.00	0.00	0.00
...................................TAATAGGATCGGCCGTTAATAA..................................	22	1	1.00	0.00	0.00	1.00	0.00
.....................................................ATAAAACTATGCCGAACTCGCA................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAGTATGCCGAACTCGAC................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAGTATGTCGAACTCGCAGT..............	23	1	1.00	0.00	0.00	0.00	1.00
..........................................................AGTATGCCGAACTCGCAGT..............	19	1	1.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATACCGATCTCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGTATGCTGAACTCG..................	20	1	1.00	0.00	1.00	0.00	0.00
...............................TAATTAATAGGATCGGCCGTTAA.....................................	23	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAGTATGCCGAACTC...................	18	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAGCATGCCGAACTCGCAGT..............	23	1	1.00	0.00	0.00	0.00	1.00
....................................AATAGGATCGGCCGTTAATAAAA................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGAATGCCGAACTCGCAGT..............	24	1	1.00	0.00	0.00	1.00	0.00
....................................................AATAAAAGTATGCCGAACTC...................	20	1	1.00	0.00	0.00	0.00	1.00
......................................................TAAAAGTATGCCGAACTCG..................	19	1	1.00	0.00	0.00	1.00	0.00
......................................................TAAAAGTATGCCAAACTCGCAG...............	22	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGTTTGCAGAACTCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00
...............................TAATTAATAGGATCGGCC..........................................	18	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCAC...............	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTATGCCGAACTCT..................	20	1	1.00	0.00	1.00	0.00	0.00
.................................ATTAATAGGATTGGCCGTTAA.....................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTAAGCCGAACTCGC.................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAGTATGCCGAACTCGCAGTT.............	24	1	1.00	0.00	0.00	0.00	1.00
.......................................................AAAAGTATGCCGAACTCGCAGC..............	22	1	1.00	0.00	0.00	0.00	1.00
.................................ATTAATAGGATCGGCCGTTAAT....................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAACAGTATGCCGAACTCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATCAAAGTATGCCGAACTCG..................	20	1	1.00	0.00	1.00	0.00	0.00
....................................................AATAAAAGxATGCCGTACTCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................ATAGGATCGGCCGTTAATAAAAG...............................	23	1	1.00	0.00	1.00	0.00	0.00
...................................TAATAGGATCGGCCGTTAAT....................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................................GTATGCCGAACTCGCAGT..............	18	1	1.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCC................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAGTATGCCGTACTCGCA................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGAATGCCGAACTCG..................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................ATAGGATCGGCCGTTAATAAAAGTAT............................	26	1	1.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGT.................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAGTATGCCGAACTCGCT................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTATGCCGAACTCC..................	20	1	1.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAACTCGCAT...............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGTATACCGAACTCGCAGT..............	24	1	1.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGAATGCCGAACTCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGGATGCCGAACTCGC.................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTCTGCCGCACTCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGTATGGCGAACTCG..................	20	1	1.00	0.00	1.00	0.00	0.00
......................................................TAAAAATATACCGAACTCGCA................	21	1	1.00	1.00	0.00	0.00	0.00
....................................................AATAAAAGTATGCCGAACTCGCAGC..............	25	1	1.00	0.00	0.00	1.00	0.00
......................................................TAAAAGTATGCCGGACTCGCAGT..............	23	1	1.00	0.00	0.00	0.00	1.00
....................................AATAGGATCGGCCGTTAATAAAAG...............................	24	1	1.00	0.00	1.00	0.00	0.00
.....................................ATAGGATCGGCCGTTAATAAAA................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTATGCCGAAATCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGGATGCCGAACTCG..................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................AAAAGTATGCCGAACTCGCAG...............	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGTATGTCGAACTCGCA................	22	1	1.00	0.00	1.00	0.00	0.00
......................................TAGGATCGGCCGTTAATAAAAGTATGC..........................	27	1	1.00	0.00	0.00	0.00	1.00

chrX_random:3207436-3207540 +

41.6

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCC---------------------------GAACTCGCAGGCGACGGATGCGCGA TGC--------AGATGCAAGCAGAATGCCCTGAACTAATG-GATTGCCTTTTAATAAAAACAA--CAGATGGATTGAAGCTGTGCGACTTTGGGATCTCGCGGGTGGTG--TGCGAGG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................................ATTGAAGCTGTGCGACTTTG..........................	20	1	1.00	0.00	0.00	1.00	0.00
................................................................................TGCGCGACTTTGGCATCTC...................	19	1	1.00	0.00	1.00	0.00	0.00

chr3L:19110897-19110976 -

37.53

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGAC------------GGATGCGCGA
AAGCTTGT--------------------AGTTATTAAATAAACTAGCTTGTCC--TGCAGTCCGATGGACTC-CAAGCGACGTGCCGAGTCGTGGAAGCGAAA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3R:24557667-24557708 +

26.34

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA GTCACTGC-------------------------------------------------AAGCTGGCCGACTTCGGCATGTGCAAGGAGGGCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..CACTGC-------------------------------------------------AAGCGGACCGAC......................	18	1	4.00	0.00	4.00	0.00	0.00
.TCACTGC-------------------------------------------------AAGCGGACCGA.......................	18	1	3.00	0.00	3.00	0.00	0.00
..............................................................GGCCGACTTCGGCATGTGCAAGGAGGGC.	28	1	2.00	0.00	0.00	2.00	0.00
.TCACTGC-------------------------------------------------AAGCGGACCGAC......................	19	1	2.00	0.00	2.00	0.00	0.00
.......C-------------------------------------------------AAGCTGGCGGATTTCGGC................	19	1	1.00	0.00	0.00	1.00	0.00
....................................................................CTTCGGCATGAACAAGGA.....	18	1	1.00	0.00	0.00	1.00	0.00

chr2R:9596587-9596605 -

10.11

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GCATGTGTAAGGAGG------------------------------------------------------------------------GCAT

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chrX:12702663-12702673 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
C--------------------------------------------------------------------------------GAATGGGCGC

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chr3R:7352149-7352164 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCCCG---------------------------------------------------------------------------GATCA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

chrX:974433-974437 -

5.62

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
C--------------------------------------------------------------------------------------GCGA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

droSec1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_4:5435200-5435290 -

96.73

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTTTGCCGAACTCGCAGGCGACGGATGCGCGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................ATAAAAGTTTGCCGAACTCGC.................	21	1	172.00	7.00	142.00	23.00
.....................................................ATAAAAGTTTGCCGAACTCGCAG...............	23	1	88.00	1.00	74.00	13.00
.....................................................ATAAAAGTTTGCCGAACTCG..................	20	1	32.00	3.00	18.00	11.00
......................................................TAAAAGTTTGCCGAACTCGCAGT..............	23	1	27.00	0.00	25.00	2.00
......................................................TAAAAGTTTGCCGAACTCGCAG...............	22	1	25.00	2.00	21.00	2.00
.......................................................AAAAGTTTGCCGAACTCGCAGT..............	22	1	20.00	2.00	16.00	2.00
.....................................................ATAAAAGTTTGCCGAACTCGCA................	22	1	17.00	0.00	12.00	5.00
.....................................................ATAAAAGTTTGCCGAACTCGCAGT..............	24	1	12.00	1.00	11.00	0.00
......................................................TAAAAGTTTGCCGAACTCGCA................	21	1	7.00	1.00	4.00	2.00
.....................................................ATAAAAGTTTGCCGAATTCGC.................	21	1	3.00	0.00	3.00	0.00
.......................................................AAAAGTTTGCCGAACTCGCAG...............	21	1	3.00	0.00	2.00	1.00
.....................................................ATAAAAGTTTGCCGAACTCGT.................	21	1	2.00	0.00	0.00	2.00
......................................................TAAAAGTTTGCCGAACTCGC.................	20	1	2.00	0.00	1.00	1.00
.....................................................ATAAAAGTTTGCCGAACTC...................	19	1	2.00	0.00	0.00	2.00
......................................................TAAAAGTTTGCCGAACTCGCAGA..............	23	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCAAACTCGC.................	21	1	1.00	0.00	0.00	1.00
.......................................................AAAAGTTTGCCGAACTCGTAGT..............	22	1	1.00	0.00	1.00	0.00
.....................................................ATGAAAGTTTGCCGAACTCG..................	20	1	1.00	0.00	1.00	0.00
.....................................................ATTAAAGTTTGCCGAACTCG..................	20	1	1.00	0.00	1.00	0.00
......................................................TAAAAGTTTGCCGAACTCGCAGTT.............	24	1	1.00	0.00	0.00	1.00
.....................................................ATAAAAGxTTGCCGAACTCGCGG...............	22	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCGATCTCGC.................	21	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCGAAGTCGCAG...............	23	1	1.00	0.00	1.00	0.00
.....................................................ATATAAGTTTGCCGAACTCG..................	20	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCGAACCCGC.................	21	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCGAACTCGGAG...............	23	1	1.00	0.00	1.00	0.00
......................................................TAAAAGxTTGCCGAACTCGCAGT..............	22	1	1.00	0.00	1.00	0.00
.........................................................AAGTTTGCCGAACTCGCAG...............	19	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCAG...............	23	1	1.00	0.00	1.00	0.00
...............GTGAGTTTCGTACACTTAATT.......................................................	21	1	1.00	0.00	0.00	1.00
.....................................................ATAAAAGxTTGCCGAACTCGC.................	20	1	1.00	0.00	1.00	0.00
.......................................................AAAAGTTTGCCGAACTCGCGGT..............	22	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCGAACTCAC.................	21	1	1.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCGACCTCGCAG...............	23	1	1.00	0.00	0.00	1.00
......................................................TAAAACTTTGCCGAACTCGCAG...............	22	1	1.00	0.00	1.00	0.00
.....................................ATAGGATCGGCCGTTAATAAAAGTTTG...........................	27	1	1.00	1.00	0.00	0.00
.....................................................ATAAAAGTTTGCCGAACTCGCT................	22	1	1.00	1.00	0.00	0.00
......................................................ATAAAGTTTGCCGAACTCGCAG...............	22	1	1.00	0.00	1.00	0.00
....................................AATAGGATCGGCCGTTAA.....................................	18	1	1.00	0.00	0.00	1.00

super_29:479476-479559 -

39.4

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGAC------------GGATGCGCGA AACCAAGCTTG----------------TAGTTATTAAATAAACTAGCTTGTCC--TGCAGTCCGATGGACTC-CAAGCGACGTGCCGAGTCGTGGAAGCGAAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................................................................CGTGCCGAGTCGTGGAAGCGAA.	22	1	1.00	0.00	0.00	1.00
..............................................................CGATGGACTC-CAAGCGACGTG...................	21	1	1.00	0.00	0.00	1.00
.......................................................................C-CAAGCGACGTGCCGAGTCGTGGAAGC....	27	1	1.00	0.00	1.00	0.00
..............................................................................GACGTGCCGAGTCGTGGA.......	18	1	1.00	0.00	1.00	0.00
..........................................CTACCTTGTCT--TGCAGTC.........................................	18	1	1.00	0.00	1.00	0.00
.............................................................................CGACGTGCCGAGTCGTGGAAGC....	22	1	1.00	1.00	0.00	0.00
.........................................................................CAAGCGACGTGCCGAGTCGTGGAAGC....	26	1	1.00	1.00	0.00	0.00
...............................................................GATGGACTC-CAAGCGACGTGCCGA...............	24	1	1.00	0.00	1.00	0.00

super_5:1724405-1724483 -

37.08

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTT-----AATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA------------ C-----------------------------TTAAGCCGGAGAACCTGCTGCTCAATGAACGAGGATATGTGAAGCTGGTGGACTTTGGCTTTGCCAAGAAGCTGCAGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................................TTGCCAAGAAGCTGGAGC	18	1	1.00	0.00	1.00	0.00
.................................AGCCGGAGATCCTGCTGGT........................................................	19	1	1.00	1.00	0.00	0.00
C-----------------------------TGAAGCCAGAGAACCTGCT...........................................................	20	1	1.00	1.00	0.00	0.00
..................................................................ATGTGAAGCTGTTCGACT........................	18	1	1.00	0.00	1.00	0.00
..............................TGAAGCCAGAGAACCTGCT...........................................................	19	1	1.00	0.00	1.00	0.00
....................................................................GTGAACCTGGTGGAxTTTGGC...................	20	1	1.00	0.00	1.00	0.00
.....................................................AATGAACGAGGATATGTGAAGCTGGT.............................	26	1	1.00	0.00	1.00	0.00
....................................................................GTGAAGCTGGTGGACTTTGGCG..................	22	1	1.00	1.00	0.00	0.00
...............................TAAGCCGGAGAACCTGCT...........................................................	18	1	1.00	0.00	1.00	0.00
...................................................................AGTGAAGCTGGTGGACTTTGGCGT.................	24	1	1.00	1.00	0.00	0.00
...................................................................AGTGAAGCTGGTGGACTTTGG....................	21	1	1.00	0.00	1.00	0.00
............................................................GACGATxTGTGAAGCTGGTG............................	19	1	1.00	0.00	0.00	1.00
.................................AGCTGGAGAAGCTGCTGC.........................................................	18	2	0.50	0.00	0.50	0.00

super_50:73002-73044 -

26.97

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCG-----------CGA GA-----------------------------------------------------------ATGCCAAACTGGGAGATTTCGGTTTGGCCAGGATGCTGCGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........................................................................GTGATTTCGGATTGGCCAG..........	19	1	1.00	1.00	0.00	0.00
.............................................................ATACCAAACTGGGAGATTCC.....................	20	1	1.00	0.00	1.00	0.00

super_11:1427915-1427950 -

21.35

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA AAATG-------------------------------------------------------CACGTCAAGATAGCCGACTTTGGACTGGCCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................CACGCCAAGATACCCGACT............	19	1	1.00	0.00	0.00	1.00

super_4:3734284-3734318 +

20.22

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGG-ATGCGCGA-------- CA-----------------------------------------------------------------AGCTGGCAGACTTCGGCATGTGCAAGGAGGGCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................................................................CTTCGGCATGAACAAGGA.....	18	1	1.00	0.00	1.00	0.00
...........................................................................GACTTTAGCATGTGCAAGG......	19	1	1.00	1.00	0.00	0.00

super_36:159221-159243 +

16.54

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA GATC------------------------------------------------------------------TCGCGGGTGGT--GTGCGAGG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
GATC------------------------------------------------------------------TCGCAGGTGGT--GGGC....	19	1	1.00	0.00	0.00	1.00
GATC------------------------------------------------------------------TACCGGGTGGT--GTG.....	18	1	1.00	0.00	0.00	1.00

None

super_1:8348383-8348401 -

10.11

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GCATGTGTAAGGAGG------------------------------------------------------------------------GCAT

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_17:347292-347302 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
C--------------------------------------------------------------------------------GAATGGGCGC

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_55:90547-90557 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CA--------------------------------------------------------------------------------GCTGCGCGC

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

super_12:20624-20639 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCCCG---------------------------------------------------------------------------GATCA

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

droYak2 - 9 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3R:27538983-27539073 -

94.58

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATTGGGACGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................ATAAAAGTATGCCGAACTCGCA................	22	1	232.00	19.00	10.00	6.00	41.00	156.00
.....................................................ATAAAAGTATGCCGAACTCG..................	20	1	139.00	2.00	0.00	14.00	21.00	102.00
.....................................................ATAAAAGTATGCCGAACTCGC.................	21	1	130.00	14.00	6.00	14.00	35.00	61.00
.....................................................ATAAAAGTATGCCGAACTCGCAG...............	23	1	60.00	18.00	11.00	1.00	23.00	7.00
......................................................TAAAAGTATGCCGAACTCGCAGT..............	23	1	33.00	9.00	1.00	2.00	4.00	17.00
......................................................TAAAAGTATGCCGAACTCGCA................	21	1	29.00	5.00	0.00	5.00	7.00	12.00
......................................................TAAAAGTATGCCGAACTCGCAG...............	22	1	20.00	4.00	1.00	1.00	10.00	4.00
.....................................................ATAAAAGTATGCCGAACTCGCT................	22	1	18.00	0.00	1.00	0.00	1.00	16.00
......................................................TAAAAGTATGCCGAACTCGC.................	20	1	17.00	0.00	1.00	2.00	0.00	14.00
.......................................................AAAAGTATGCCGAACTCGCAGT..............	22	1	14.00	5.00	3.00	2.00	1.00	3.00
.....................................................ATAAAAGTATGCCGAACTC...................	19	1	13.00	1.00	0.00	0.00	0.00	12.00
.....................................................ATAAAAGTATGCCGAACTCGCC................	22	1	11.00	0.00	0.00	0.00	0.00	11.00
.....................................................ATAAAAGTATGCCGAACTCGCAGT..............	24	1	5.00	2.00	0.00	2.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCG................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
......................................................TAAAAGTATGCCGAACTCG..................	19	1	4.00	0.00	0.00	0.00	0.00	4.00
......................................................TAAAAGTATGCCGAACTCGCAGC..............	23	1	4.00	0.00	0.00	0.00	1.00	3.00
.......................................................AAAAGTATGCCGAACTCGCAG...............	21	1	3.00	1.00	0.00	1.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCAA...............	23	1	2.00	0.00	0.00	0.00	2.00	0.00
......................................................TAAAAGTATGCCGAACTCGCAA...............	22	1	2.00	1.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAACTCGT.................	21	1	2.00	0.00	0.00	1.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCAT...............	23	1	2.00	0.00	0.00	0.00	0.00	2.00
.....................................................ATAAAAGTATGCCGAACTCGCCG...............	23	1	2.00	0.00	0.00	0.00	2.00	0.00
.....................................................ATAAAAGTATGCCGAACTAGC.................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................ATAAAAGTATTCCGAACTCGC.................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.....................................................ATAAAAGGATGCCGAACTCGCA................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................AGTATGCCGAACTCGCAGT..............	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATGAAAGTATGCCGAACTCGCCG...............	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................ATAAAAGTATGCTGAACTCG..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAGGTATGCCGAACTCGCA................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATACCGAACTCGCAG...............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................TAAAAGTATGCCGAACTCGCAGA..............	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................ATAAAAGTATGCCAAACTC...................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................................TAAAAGTATGCCGAACTAGCAG...............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGGGTTTCGTACACTTAATT.......................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGACCTCG..................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTTTGCCGAACTCGCAG...............	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................ATAAAAGGAGGCCGAACTCGC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................AATAAAAGTATGCCGAACTCGCAGT..............	25	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................TAAAAGTATxCCGAACTCGCCG...............	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTGAGTTTCGTACACTTAATTAATTGGGAC..............................................	30	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTATGCCAAACTCGCA................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGGATGCCGAACTA...................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................TAAAGGTATGCCGAACCCGCAGG..............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCGCAC...............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAACTCTC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCT..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAATTATGCCGAACTCGCA................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................AAAGGATGCCGAACTCGCAGT..............	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................ATAAAAGTATGCCGAACGCGCT................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAACGTATGCCGACCTCGC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAATATGCCGAACTCGC.................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTCTGCCGAACTCGCA................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTCTGCCGAACTCG..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAACT....................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................AAAAGTATGCCGAACTCGC.................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACGCGC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................AATTGGGACGGCCGTTAATAAAAGTATGC..........................	29	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................ATAAAAGTATACCGAACTCG..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................................TAAAAGTATGCTGAACTCGCAGT..............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................................TAAAAGTATGCCTAACTGG..................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGGATACCGAACT....................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTGG..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................................TAAAAGTATGCCGAACTCGCAGG..............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................AAAGTATGCCGAACTCGCAGTA.............	22	1	1.00	0.00	0.00	1.00	0.00	0.00
................................GATTAATAGGGACGGCCG.........................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................TAAAAGGATGCCGAACTCGCAGT..............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATCCCGAACTCGC.................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATGAAAGTATGCCGAACTCGA.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAGGTATGCCGAACTCG..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATACCGAACTCGCT................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................GTATGCCGAACTCGCCGT..............	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTACGCCGAACTCG..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAGCTCGCA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................ATAAAAGTATGCCGCACTCGC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAACGTATGCCGAACTCG..................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................TAAAAGTATGCCCAACTCGCAGA..............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATACAAGTCTGCCGAACTCG..................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACGCTCA................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATTCCGAACTCGCA................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAACTCAC.................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................ATAAAAGTATGCCGAACACGC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................AATAAAAGAATGCCGAACTCG..................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTTCGTACACTTAATT.......................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGAACTCCC.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
......................................................TAACAGTATGCCGCACTCGCAG...............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..CCGTGxTGGAGAGGAGAG.......................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................TAAAAGTATGCCGTACTCGCAG...............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................ATAAAAGTATGCCGACCTCGC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00

chr3L:112210-112293 +

33.91

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCG------CGA GAGTTAGACGATGGCGAGGGT--------------GACGACGAGCAGCAGCAGGAAGAGATGGACTCCCCGCGCCACCGACAGAGACGTTACAACCG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
....................................ACGAGGAGCAGCAGGAGGA..........................................	19	4	10.00	0.00	0.00	10.00	0.00	0.00
.......................................ACGAGGAGCAGCAGGAGGA.......................................	19	4	10.00	0.00	0.00	10.00	0.00	0.00
.....................................CGAGGAGCAGCAGGAGGA..........................................	18	4	1.00	0.00	0.00	0.75	0.25	0.00
........................................CGAGGAGCAGCAGGAGGA.......................................	18	4	1.00	0.00	0.00	0.75	0.25	0.00
......GACGATGGCGAGGGT--------------GACGACGA......................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................ACGATGAGCAGCAGGAGGA..........................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................ACGAGGAGCAGCAGGAGG........................................	18	4	0.25	0.00	0.00	0.25	0.00	0.00
............................................CAGCAGCTGGACGAGATGGA.................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................GGGT--------------GACGACGAGCAGCAGC..............................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..GTTAGACGATGGCGAGGGT--------------GAC...........................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.......ACGATGGCGAGGGT--------------GACGAC........................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
......GACGATGGCGAGGGC--------------GATGAC........................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................GCGCCACCGACAGAGACGT........	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................CACCGACAGAGACGTTACAAC..	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................GACGACGAGCAGCAGCAGGAAGAGATG...................................	27	1	1.00	0.00	0.00	1.00	0.00	0.00
..GTTAGACGATGGCGAGGGT--------------GACGACGAG.....................................................	28	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................ACGAGGAGCAGCAGGAGG...........................................	18	4	0.25	0.00	0.00	0.25	0.00	0.00
.......................................ACGAGAAGCAGCAGGAGG........................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
GAGTTAGACGATGGCGAG...............................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................AGCAGCTGGACGAGATGGA.................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................................GACAGAGACGTTACAACCG	19	1	1.00	0.00	0.00	1.00	0.00	0.00

chrX:13526276-13526318 +

26.97

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAG-----------GCGACGGATG-CGCGA GA-----------------------------------------------------------ATGCCAAACTGGGAGATTTCGGCCTGGCCAGG-ATGCTGCGA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................GGTGATGTCGGCCTGGCC.............	18	1	2.00	1.00	0.00	0.00	0.00	1.00

chr3L:20744774-20744824 +

17.44

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACT-CGCAGGCGACGGATGCGCGA TGTCCTGC----------AGTCCTATGGACTCAA---------------------AGCGACGTGCCGAGTCTTGGAAGCGA----------A	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...........................GACTCAA---------------------AGCGACGTGCCGAGT......................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
........................ATGGACTCAA---------------------AGCGACGTGCCGAGT......................	25	1	1.00	0.00	0.00	1.00	0.00	0.00

chr3R:14137077-14137103 +

16.85

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGA----------TGCGCGA --------------------------------------------------------------------------AGGTGACGGACTTTGGGTTCTGCGCCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................TGACGGACTTTGGCTTCTC.....	19	1	1.00	0.00	0.00	0.00	1.00	0.00

None

chrX:10717454-10717476 -

16.54

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GATC------------------------------------------------------------------TCGCGGGTGGT--GTGCGAGG

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

chr2R:10765685-10765700 -

10.11

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
---------------------------------------------------------------------------GGCATCCGATCTGGGG

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

chr3R:2759716-2759731 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCCCG---------------------------------------------------------------------------GATCA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

chrX:10630349-10630359 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
C--------------------------------------------------------------------------------GAATGGGCGC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

droEre2 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4820:1381504-1381594 +

95.65

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATTGGAGCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................ATAAAAGTATGCCGAACTCGCA................	22	1	431.00	11.00	18.00	0.00	402.00
.....................................................ATAAAAGTATGCCGAACTCGCAG...............	23	1	269.00	5.00	14.00	0.00	250.00
.....................................................ATAAAAGTATGCCGAACTCGC.................	21	1	215.00	8.00	13.00	0.00	194.00
.....................................................ATAAAAGTATGCCGAACTCG..................	20	1	94.00	2.00	9.00	0.00	83.00
......................................................TAAAAGTATGCCGAACTCGCAG...............	22	1	48.00	3.00	3.00	0.00	42.00
.....................................................ATAAAAGTATGCCGAACTCGCT................	22	1	25.00	0.00	3.00	0.00	22.00
......................................................TAAAAGTATGCCGAACTCGCAGT..............	23	1	10.00	1.00	0.00	0.00	9.00
......................................................TAAAAGTATGCCGAACTCGCA................	21	1	6.00	0.00	0.00	0.00	6.00
.....................................................ATAAAAGTATGCCGAACTCGCAT...............	23	1	6.00	0.00	0.00	0.00	6.00
.....................................................ATAAAAGTATGCCTAACTCGCAG...............	23	1	5.00	0.00	0.00	0.00	5.00
.....................................................ATAAAAGTATGCCGAACTCGCAGA..............	24	1	5.00	0.00	0.00	0.00	5.00
.....................................................ATAAAAGTATGCCGAACTCGCAA...............	23	1	4.00	0.00	0.00	0.00	4.00
.....................................................ATAAAAGTATGCCGAACTCTCA................	22	1	4.00	0.00	0.00	0.00	4.00
......................................................TAAAAGTATGCCGAACTCGCAGA..............	23	1	4.00	1.00	0.00	0.00	3.00
.....................................................ATAAAAGTATGCCGAACTCGCAGT..............	24	1	3.00	0.00	0.00	0.00	3.00
.....................................................ATAAAAGTATGACGAACTCGCAG...............	23	1	3.00	0.00	0.00	0.00	3.00
.....................................................ATAAAAGTATGCCGAACTCGT.................	21	1	3.00	0.00	1.00	0.00	2.00
.....................................................ATAAAAGTATGCCTAACTCGCA................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................ATAAAAGTATGCCGAACTAGCAG...............	23	1	3.00	0.00	0.00	0.00	3.00
.....................................................ATAAAAGTATGCCGAACTCGA.................	21	1	3.00	0.00	1.00	0.00	2.00
.....................................................ATAAAAGTATGCCGAACTC...................	19	1	3.00	0.00	0.00	0.00	3.00
.....................................................ATAAAAGTATGCAGAACTCGCA................	22	1	3.00	0.00	0.00	0.00	3.00

scaffold_4784:121668-121745 +

32.56

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA GAGTTGGACGACGGCGAGGGCGAC--------------GACGAGCAGCAGCAGGAAGAGATGGACTCTCCGCGTCACCGTCAGAGGCGTTA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......ACGACGACGAGGACGAC--------------G....................................................	18	3	0.33	0.00	0.00	0.00	0.33

scaffold_4784:19577437-19577510 -

31.98

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TAAGTTATTAAATAAACTAGCTTATCCTGC------AGTCCGATGGACTCTA-----------AACGACGTGCCGAGTCGTGGAAGCGAAA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4770:11396352-11396379 -

18.88

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
-------------------------------------------------------------ATTTTGGACTCGCT--CGAAGAACTCCCGA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4845:21359511-21359532 -

13.84

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GATCCTGCCTG---------------------------------------------------------------------CGACTGGACAA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4690:16698710-16698720 -

11.24

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGC-GCGA
---------------------------------------------------------------------------------GGATGCTGCGA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4690:6882684-6882694 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
C--------------------------------------------------------------------------------GAATGGGCGC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4770:7504669-7504684 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCCAGGA---------------------------------------------------------------------------TTA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

droFic1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000453782:677613-677706 +

81.59

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATA---GGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACGGTTCTGGAGCGGTGAGTTTCGTACACTTAATTAATACAAGAAGCGGGGATTAATAAAAGTATGTCGAACTCGCAGGCGGCGGATGCGCGA

Size

Hit Count

Total Norm

scf7180000453800:604952-605039 -

46.41

CACCGTG--------CTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAA--CTCGCAGGCGACGG---------------ATGCGC-GA
CACTGCGATCTGAAGCCGGAGAA---TGTCCTGCTCTCC--------------------------TCGGACGCCGAATTCCCGCAGGTGAAGCTCTGTGACTTTGGCTATGCTCGGA

Size

Hit Count

Total Norm

scf7180000454113:2479030-2479099 +

27.66

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCCTTTCAATCGAAATGTCTCTTGCA------------------GTCCGATGGACTCAAAACGTCGAGCTG---AGTCGTGGAAGAGAAA

Size

Hit Count

Total Norm

scf7180000454045:1323924-1323961 -

23.6

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AAGCTGGCCGA--------------------------------------------------CTTCGGCACCTGCATGC---GGATGGGGGC

Size

Hit Count

Total Norm

scf7180000454116:199638-199648 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CA--------------------------------------------------------------------------------GCTGCGCGC

Size

Hit Count

Total Norm

None

droEug1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409679:78776-78859 -

68.45

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACAGTGCTGGAAAGGTGAGT-TCATAGACTAAATCAGTATGAAAAGTGACTAAT------ATACCGAATTCGCAGGAGACGGATGCGCGA

Size

Hit Count

Total Norm

scf7180000409466:5107974-5108044 +

32.29

CACCGTGC---TGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGG--CCGTTAATAAAAGTATGCCGAACTCGCAGGCG----ACGGATGCGCGA
TTGTGCTCTATTGTAAAG-----------------------------TGGCTTTGTGGAATACAGTCCGATGGATTCGAAGC-GGCGTGCCGAGTCGTGG

Size

Hit Count

Total Norm

scf7180000409464:358057-358193 -

27.11

CACCGTGCTGGAGAGGTGAGT-TTCGTACACTTAATTAATAGGATCGG--CCGTTAATAAAAGTATG---CCGA----------------------------------ACTCGCAGGCGACGGATGCG-----CGA-
CTACATTACAGAGATGATATTGGCCATAAACAGTATTCACCAGATCAGGTACGTTCATAGAGACATTAAGCCGGATAATGTCTTACTGGATAAACGAGGCCATGTGCGGCTAGCAGACTTCGGATCCTGCCTACGAC

Size

Hit Count

Total Norm

scf7180000409787:703996-704040 -

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GCCACTGCAAGCTAGCCGACTTCGGCAT----------------------------------------------GTGCAAGGAAGGCATCA

Size

Hit Count

Total Norm

scf7180000409554:2461100-2461150 +

23.6

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA------------
AACGGGGA----------------------------------------------------TATGTGAAGCTGGTAGACTTTGGCTTCGCCAAGAAGCTACAGA

Size

Hit Count

Total Norm

droBia1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302113:733286-733375 +

89.11

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAAT-AGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACCGTGCTGGAGCGGTGAGTTTCGTACACTTAGTTAATTCGGA--GGCCATTAATAAAAGTATGCCGAACTCGCAGGCGGCGGATGCGCGA

Size

Hit Count

Total Norm

scf7180000302402:6468401-6468492 +

44.16

CACCGTGC-TGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CATCCTGCACAGGGACGTGCGTCCCGCCTGCGCCCTCCTCGCCACCGTCGACAATTCGGCGCCCGTGAAACTTGGCGGCTTCGGATCGGCCA

Size

Hit Count

Total Norm

scf7180000302193:5846585-5846676 +

43.88

CACCGTGCTGGAG-AGGTGAGTTTCGTACACTTAA-----TTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TGCCAGGTAAGAATAGATGC-TTTTACCAACATGAGAGTGCTAATTGGCTTGCTAAATC-CCACAGTCCGATGGACTCGAA-GCGACGGGC-CGA-G

Size

Hit Count

Total Norm

scf7180000302193:545661-545751 +

39.33

CACCGTGCTGGAGAGGTGA-GTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CTGCTTACCGGCGCCTCGCCATTCGCCACGTCCGACGGACAGAGCCAGCAGTCGGAGATTTCGCGACGCATTCAGAAGGAGCAGCCACT-GA

Size

Hit Count

Total Norm

scf7180000302432:648697-648728 -

19.1

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
G-----------------------------------------------------------CACGCCAAGCTCTGCGACTTCGGACTGGCCC

Size

Hit Count

Total Norm

scf7180000302143:520785-520816 -

19.1

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GCCGACTTCGGAT--------------------------------------------------------CCT---GCCTGCGGCTGGATAA

Size

Hit Count

Total Norm

None

scf7180000302421:1750498-1750531 +

17.98

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AAGCTGG---------------------------------------------------------CCGACTTCGGCACCTGCATGCGCATGG

Size

Hit Count

Total Norm

scf7180000299102:207850-207876 -

16.85

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGA----------TGCGCGA
--------------------------------------------------------------------------AGGTGACGGACTTCGGCTTCTGCGCCA

Size

Hit Count

Total Norm

None

scf7180000302292:970956-970971 -

10.11

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
---------------------------------------------------------------------------GGCATTCGATCCGGGG

Size

Hit Count

Total Norm

None

scf7180000299102:1835099-1835114 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCTCGG---------------------------------------------------------------------------ATCA

Size

Hit Count

Total Norm

None

droTak1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415367:120661-120751 +

90.28

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACTGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATATGGAAAGCCATTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA

Size

Hit Count

Total Norm

scf7180000415254:744979-745064 +

38.85

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCA-----------GGCGACGGATGCGCGA
TCTCATCCTGGGATTGTTAATTAAATAG----------------CGATCTATTTCCGCAGTCCGATGGACTCAAAGCGACGTGCCGAGTCGTGGAAGAGAAA

Size

Hit Count

Total Norm

scf7180000413899:116194-116274 -

37.69

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GAGCTGGAGGACGGCGAGGGCG-----------ACGAGGAGCAGCAGCAGCAGGACGAGATGGACTCGCCGCGCCACCGGCAGAGGCGCTA

Size

Hit Count

Total Norm

scf7180000415310:104617-104658 +

20.76

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GCCACTGCAA-------------------------------------------------GCTGGCCGACTTCGGGATGTGCAAGGAGGGCA

Size

Hit Count

Total Norm

scf7180000415242:233658-233692 +

20.65

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGAT----GCGC---GA
TACA---------------------------------------------------------------AGCTGACCGACTTCGGACTGGCGCGCCTGGC

Size

Hit Count

Total Norm

None

scf7180000415351:300819-300844 -

18.13

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TTCG--------------------------------------------------------------GGACGTGCATGC---GAATGGGCGC

Size

Hit Count

Total Norm

None

scf7180000415880:173655-173672 +

13.48

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGAT-GCGCGA
--------------------------------------------------------------------------AGGTGACGGACTTTGGGT

Size

Hit Count

Total Norm

None

scf7180000415262:98248-98264 -

11.24

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AG-GATGCT-------------------------------------------------------------------------GCGGCGGGA

Size

Hit Count

Total Norm

None

scf7180000415878:721981-721996 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCTCGG---------------------------------------------------------------------------ATTA

Size

Hit Count

Total Norm

None

scf7180000412281:41554-41562 +

6.74

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GA----------------------------------------------------------------------------------TCCCTGA

Size

Hit Count

Total Norm

None

droEle1 - 9 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000491280:2970971-2971061 -

87.05

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACAGTGCTGGAGAGGTGAGTTTCGTACGCTTAATTAATAAATGAAGCAATTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA

Size

Hit Count

Total Norm

scf7180000491193:4103313-4103376 -

27.66

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AATCTTGCTTTTG------GCT-CCTGCAGT-----------CCCATGGATTCGAAGAGACGTGCCGAGTCATG--GAAACGA-------A

Size

Hit Count

Total Norm

scf7180000491261:1451565-1451606 +

25.24

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GCCACTGTAAGTTGGCCGACTTTGGCATGTG-------------------------------------------------CAAGGAGGGCA

Size

Hit Count

Total Norm

scf7180000491280:2856740-2856769 -

16.85

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
-------------------------------------------------------AGAAATATTTCAAAGTCTCAAGTTA------CTCAA

Size

Hit Count

Total Norm

scf7180000491193:274181-274200 -

14.3

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
C---------------------------------------------------------------------TCGCGGGTGGT--GTGCGAGG

Size

Hit Count

Total Norm

None

scf7180000491186:2723575-2723592 -

13.48

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGAT-GCGCGA
--------------------------------------------------------------------------AGGTGACGGACTTCGGAT

Size

Hit Count

Total Norm

None

scf7180000491008:2123343-2123358 +

10.11

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTA---------------------------------------------------------------------------CGCCCGCATCA

Size

Hit Count

Total Norm

None

scf7180000491087:859126-859136 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CA--------------------------------------------------------------------------------GCTGCGCGC

Size

Hit Count

Total Norm

None

scf7180000491212:2073848-2073857 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
---------------------------------------------------------------------------------GGACGCGGGA

Size

Hit Count

Total Norm

None

droRho1 - 13 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000774800:25017-25107 -

89.2

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACAGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAAAGGAAGCCATTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA

Size

Hit Count

Total Norm

scf7180000773422:101253-101339 +

44.53

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGT-ATGCCG-AACTCGCAGG-CGACGGATGCG----------C-------------GA
CATTCT------------------GCACTTTCAATTT-------------TTAATTAAACTTGTTTTGGGTCCTGCAGTCCGATGGACTCGAAGCGACGTGCCGAGTCGTGGAAACA

Size

Hit Count

Total Norm

scf7180000779983:21844-21936 -

43.79

CACCGTGCT-GGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CATCCTGCACAGGGACGTGCGACCCGCCTGCGCACTGCTCGCCACCGTCGACAATTCGGCGCCCGTGAAACTGGGCGGCTTCGGATCGGCTA

Size

Hit Count

Total Norm

scf7180000779221:9698-9742 +

30.96

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAA-CTCGCAGGCGACGGATGCGCGA
-------------------------------------------TCGGCC----ATAAGGGTGTCCTGAAGATCGCAGACTTCGGCTGGTCTG

Size

Hit Count

Total Norm

scf7180000779479:34264-34304 +

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCG-----------CAGGCGACGGATGCGCGA
-------------------------------------------------------------ATGCCAAACTTGGGGATTTCGGTCTGGCCAGGATGCTGCGA

Size

Hit Count

Total Norm

scf7180000780066:257893-257929 +

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGG-ATGCGCGA
-------------------------------------------------------AAGGCTATGCCAAGTTGGCAGACTTCGGTGTGGCCGG

Size

Hit Count

Total Norm

scf7180000779986:448412-448434 +

16.54

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GATC------------------------------------------------------------------TCGCGGGTGGT--GTGCGAGG

Size

Hit Count

Total Norm

None

scf7180000779841:600941-600962 +

15.82

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGACCT------------------------------------------------------------------GCATG---CGAATGGGCGC

Size

Hit Count

Total Norm

None

scf7180000777386:16584-16605 -

13.84

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GATCCTGCCTG---------------------------------------------------------------------CGACTGGACAA

Size

Hit Count

Total Norm

None

scf7180000772262:17263-17278 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCTCGG---------------------------------------------------------------------------ATTA

Size

Hit Count

Total Norm

None

scf7180000759361:1157-1172 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTACGCTCGG---------------------------------------------------------------------------ATTA

Size

Hit Count

Total Norm

None

scf7180000780084:549137-549143 -

5.62

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TGA------------------------------------------------------------------------------------CCGA

Size

Hit Count

Total Norm

None

scf7180000779985:1427033-1427038 +

4.49

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
-------------------------------------------------------------------------------------GTGCCA

Size

Hit Count

Total Norm

None

droKik1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302390:601160-601259 -

69.42

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAAT------AGGATCGGCCG---TTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACGGTGCTGGAAAGGCGAGTTTTGTATATTTAATTAATTTTCAAAGTATCGTTCATAATTAATAAAAGTATGCTGAACTCGCAGGCGGCGAATGCGCGA

Size

Hit Count

Total Norm

scf7180000301710:304179-304268 +

44.06

CACCGTGCTGGAGAGGTG--AGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGAGGAGCTGGACGACGGCGATGAGGATGTACTCCAGCAACAGCAGCAGCAGG-ACGAGAC--GGACTCGCCGCGTCAACGCCAGAGACGTTA

Size

Hit Count

Total Norm

scf7180000302686:1196666-1196763 -

39.96

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGAT---CGGCCGTTAATAAAAGTATGCC-----------GAACTCGCA--GGCGACGGATGCGCGA
TGACAAGCAGGTGAGGC--ATTCAATCCACTTAAGCATTAATATTCTAGG-------TGACATTGTGATGTGACCAAGGAGGACTCTTAATTCAGAAGGTTTTAAGG

Size

Hit Count

Total Norm

scf7180000302391:657922-657997 +

37.04

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TAGTG-----AAGATGTAACTAATTATAATCTATACAGCCCCATGG-----------ACTCAAAGCGACGTGCCGAGTCATGGAAGCGAAA

Size

Hit Count

Total Norm

scf7180000302256:444658-444690 -

22.9

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCG--CAGGCGACGGATGCGCGA
G-----------------------------------------------------------TACCCCGAAGTCGGTGAGGCGAGGAGCTCGGG-

Size

Hit Count

Total Norm

scf7180000302724:245567-245591 +

18.37

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCG-ACGGATGCGCGA
------------------------------------------------------------------GCACCTGCATGCGCATGGGTGC-CAA

Size

Hit Count

Total Norm

scf7180000302276:492346-492372 -

16.85

Size

Hit Count

Total Norm

None

scf7180000302685:706066-706090 -

12.36

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGGC------------------------------------------------------------------TTGCCCGCAACATGACCATGG

Size

Hit Count

Total Norm

None

droAna3 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12911:4366271-4366356 +

58.4

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA CACTGTGCTGGAGAGGTAATCTTTGAATAATTATCTGTGAGTTGTGGCATCTAATGATTGTT-----ATCTTCCAGACGTCGCATGCGTGA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................TGTGGGTTGGGGCATCT.......................................	17	1	1.00	0.00	0.00	1.00	0.00
...................................TGTGGGTTGTGGGATCT.......................................	17	1	1.00	0.00	0.00	1.00	0.00
....................CTTGGAATAATTATCTGGGA...................................................	20	1	1.00	1.00	0.00	0.00	0.00
.....................TTGGAATAATTATCGGTG....................................................	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_13117:1734400-1734437 -

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AAGCTGGCCGA--------------------------------------------------CTTCGGCACCTGCATGC---GGATGGGCGC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13340:19696806-19696848 -

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GTCACTGCAAGCTGGCCGACTTCGGTATGTGTA------------------------------------------------AGGAGGGCAT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12911:2931785-2931817 +

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA- -----------------------------------------------------------GCACGCCGAAGTCTGTGAGGAGGGGTGCGCGTA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................GAAGGCTGTGAGGAGGC.........	17	1	1.00	0.00	0.00	1.00	0.00

scaffold_13337:19430623-19430686 +

22.92

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA TATCATTT-------------------TATTTTATTCACAGTCCCATGGATTCAAAGCGACGAGCTGAGTCGTG--------GAAAAGGAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................................GGATTCAAAGCGACGAGCTGAGT.....................	23	1	1.00	1.00	0.00	0.00	0.00
......................................................ACGCGTCGAGCTGAGT.....................	16	1	1.00	0.00	0.00	1.00	0.00
..........................................................GACGAGCTGAGTCGTG--------GAAAAGGA.	24	1	1.00	1.00	0.00	0.00	0.00

scaffold_13117:1561884-1561919 +

21.35

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA------ -------------------------------------------------------------ATGCCAAGCTAGGAGACTTCGGCTTGGCTAGGATGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................................................................AGGAGACTTCGGTTTGGT........	18	1	3.00	0.00	0.00	3.00	0.00
...............................................................GTGAAGCTAGGAGACTTCG...............	19	1	2.00	2.00	0.00	0.00	0.00
.......................................................................AGTAGACTTCGGTTTGGC........	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................ATTAGACTTCGGCTTGGC........	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................AGGAGACTTCGGTTTGGG........	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................AGCAGACTTCGGTTTGGC........	18	1	1.00	0.00	0.00	1.00	0.00
.....................................................................ATATGAGACTTCGGCTTGGC........	20	1	1.00	0.00	0.00	1.00	0.00
......................................................................TAGTAGACTTCGGTTTGG.........	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_13340:9966538-9966553 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGTTA---------------------------------------------------------------------------CGCCCGCATTA

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

droBip1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396640:1207116-1207199 +

49.57

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCG--------------------------AACTCGCAGGCGACGGATGCGCGA
CACAGTGCTGGAGCGGTAAGTTG---------------------------------GAGGAATGCCTATGAGTCACGTCATGTACTGATCTTTATCTTCCAGACGACGGATGCGCGA

Size

Hit Count

Total Norm

scf7180000396360:625159-625230 +

29.34

CACCGTGCTGGAGAGGTGAGTT-----------TCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CATTAAACTAATAACATTATTACAATTGCAGTCCCATGGAT---------------------TCAAAGAGACGAGCTGAGTCCTG---------GAAAAGGA

Size

Hit Count

Total Norm

scf7180000396714:174140-174172 -

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA-
-----------------------------------------------------------GCACGCCGAAGTCTGTGAGGAGGGGTGCGCGTA

Size

Hit Count

Total Norm

scf7180000396708:4402220-4402249 +

22.12

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TGC------------------------------------------------------------GCCAACATCGAGGGCGACGAG-AAGCGC

Size

Hit Count

Total Norm

scf7180000396425:382941-382968 +

15.73

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
---------------------------------------------------------------GCCGACTTCGGCACCTGCATGCGCATGA

Size

Hit Count

Total Norm

scf7180000396728:2066155-2066171 +

12.36

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
--------------------------------------------------------------------------AGGTGACGGACTTTGGA

Size

Hit Count

Total Norm

None

scf7180000396728:413589-413594 -

5.62

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
-------------------------------------------------------------------------------------GGGCGA

Size

Hit Count

Total Norm

None

dp4 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2:577090-577184 +

49.96

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGT---------------ATGCCGAACTCGCAGGCGACGGATGCGCGA CACTGTGCTGGAGCGGTAAGTC----------CATGAATTGCATCCCCCTTTGATTATTCTTTAATCTGGAAATCCCT-GTGATCCCATAGACGACGGATGCGCGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................GATCGCATCCCCCTTTGA....................................................	18	1	1.00	0.00	1.00	0.00	0.00

chrXL_group1e:12301106-12301204 +

40.05

CACCGTGCTGGAGAGGTGAGTT------TCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGAC-------------GGATGCGCGA CACCATCCTGCATAGGGACATCAAGCCGGCGAACA---TATTCTTGGATGCGGCCGGCAA--------TGCCAAGCTCGGGGATTTCGGTCTGGCGCGTATGCTGCGGCG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................................................GGATTTCGGTCTGGCACG............	18	1	1.00	0.00	0.00	0.00	1.00

chrXR_group6:5941478-5941550 -

33.78

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TTGGGC-------GTGCATATTTCCGATCCTTTTGCAGTCCCATG---GATTCAAAGAGGCGGGCCGAGTC-GT-------GGAAAC-GGA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group3:472813-472860 +

26.44

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA- GATCGACTCGCAGGGG--------------------------------------------TACCTCAAGGTCACGGACTTTGGGTTCGCCAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...CGACTCGCAGGGG--------------------------------------------TACCTCAAGGT.....................	24	1	1.00	0.00	1.00	0.00	0.00

chr2:22320265-22320294 +

23.17

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA T------------------------------------------------------------GTGCCAATATCGAGGGCGACGAG-AAGCGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................................................TATCGATGGCGAAGAG-AA....	18	1	1.00	0.00	0.00	1.00	0.00

chr3:13323313-13323358 -

22.47

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGG-ATGCGCGA--------- -------------------------------------------------------AGGGGCACATCAAGCTTACCGACTACGGCATGTGCAAGGAAGGCAT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.............................................................................CTACAGCATGTGCAAAGAA.....	19	1	1.00	0.00	1.00	0.00	0.00

chrXR_group8:1000375-1000428 -

18.0

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA CACCG--CCGACGAGATGGACTCCCCGCGTC---------------ACCGCCAGCGCCGCTAT--------------------GCTCGCCG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........CGACGAGATGGACTCCAC.................................................................	18	1	2.00	0.00	1.00	0.00	1.00
........CGACGAGATGGACTCCCCGCGT.............................................................	22	1	1.00	1.00	0.00	0.00	0.00

chrXL_group1a:5740212-5740245 +

16.85

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AAGCTC---------------------------------------------------------GCCGATTTCGGCACCTGTATGCGCATGG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXL_group1e:1766556-1766578 +

16.54

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GATCTCGC--------------------------------------------------------------------GCGTTGTGTGCGAGG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chr2:12080701-12080716 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTATGCC---------------------------------------------------------------------------CGCATCA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chr4_group1:693742-693751 -

4.49

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
---------------------------------------------------------------------------------GCACACACAC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

chrXR_group8:1421408-1421412 +

3.37

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AATCG--------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

droPer1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_14:1306248-1306344 -

50.87

CACCGTGCTGGAGAGGTGAGTT------TCGTACACTTAATTAATAGGATCGGCCGTTAATA-AAAGTATGCCGAACTCG--CAGGCGACGGATGC-GCGA CACCATCCTGCATAGGGACATCAAGCCGGCGA--ACAT-ATTCTTGGATGCGGCCGGCAATGCCAAGCTCGGCGATTTCGGTCTGGCG-CGTATGCTGCGG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......CCTGCATGCGGACATCAAGC...........................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................GGCAATGACCAGCTCGGCG...........................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
................GACCTCAAGCCGGTGA--AC.................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

super_7:3361274-3361368 +

49.96

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGT---------------ATGCCGAACTCGCAGGCGACGGATGCGCGA CACTGTGCTGGAGCGGTAAGTC----------CATGAATTGCATCCCCCTTTGATTATTCTTTAATCTGGAAATCCCT-GTGATCCCATAGACGACGGATGCGCGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...............................................................................GTGAGCCCATAGxCGACGGA.......	19	1	7.00	7.00	0.00	0.00	0.00	0.00

super_47:441502-441574 -

32.89

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA TTGGGCG-------TGCATATTTCCGATCCTTTTGCAGTCCCATGG---ATTCGAAGAGGCGGGCCGAGT-CGTG-------GAAAC-GGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..............................................................GGCCGAGT-CGTG-------GATGC-G..	18	1	3.00	1.00	0.00	0.00	0.00	2.00
...............................................................GCCGAGT-CGTG-------GAAAC-GGA	19	1	1.00	1.00	0.00	0.00	0.00	0.00

super_1:1948468-1948515 +

27.5

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA- GATCGACTCGCAGGGG--------------------------------------------TACCTCAAGGTCACAGACTTTGGGTTCGCCAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................GTCACAGACTTTGGGTTCGCC..	21	1	1.00	0.00	0.00	0.00	0.00	1.00

super_3:5100679-5100708 +

23.17

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA T------------------------------------------------------------GTGCCAATATCGAGGGCGACGAG-AAGCGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................................................ATATCGAGGGCGACGAG-AAGC..	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................................................GTGCCAATATCGAGGGCGACGAG-AAGC..	27	1	1.00	1.00	0.00	0.00	0.00	0.00

super_32:475086-475139 +

18.0

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA CACCG--CCGACGAGATGGACTCCCCGCGTC---------------ACCGCCAGCGCCGCTAT--------------------GCTCGCCG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........CGACGAGATGGACTCCAC.................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
...........................CGTC---------------AGCGCCAGCGCCGC...............................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
........CGACGAGATGGACTCCCCGCGT.............................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..CCG--CCGACGAGATGGACTCCCC.................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
CACCG--CCGACGAGATGGACTCCCCGCGT.............................................................	28	1	1.00	0.00	0.00	0.00	0.00	1.00
...........CGAGATGGACTTACCGCG..............................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................CCCGCGCC---------------AGCGCCAGCG...................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...CG--CCGACGAGATGGACTCTAC.................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00

super_308:22968-23001 +

17.98

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AAGCTC---------------------------------------------------------GCCGATTTCGGCACCTGCATGCGCATGG

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_8317:651-684 +

17.98

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AAGCTC---------------------------------------------------------GCCGATTTCGGCACCTGCATGCGCATGG

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_18:605574-605596 +

16.54

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GATCTCGC--------------------------------------------------------------------GCGTTGTGTGCGAGG

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

super_0:8416038-8416053 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTATGCC---------------------------------------------------------------------------CGCATCA

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

super_2:8298912-8298915 +

2.25

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
---------------------------------------------------------------------------------------GCAT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

droWil1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_181130:10168431-10168520 -

51.59

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA AACTGTATTAGAAAGGTATAATGAATAAACCAATTTGAATAG-CAAACCATTAAATCAATTTCCTTTTTTGTCTAGACGACGTATGCGTGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................TGAATAx-CAAACCATGAAA....................................	18	1	2.00	0.00	2.00	0.00	0.00
...................AATAAATAAATCAATTTG......................................................	18	4	0.25	0.00	0.25	0.00	0.00

scaffold_180698:2762147-2762233 +

44.63

CACCGTGCTG-GAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCA-----------GGCGACGGATGCGCGA GATAGTAATCACACACATTTGTTTTTTTATTTTTATT----------------TTTATTAGCCCCATGGACTCAAAGCGACGAGCCGAGTCATGGAAACGAAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..............................................................................GACGAGCTGAGTCATGGAAACGA..	23	1	2.00	2.00	0.00	0.00	0.00
...............................................................CCATGGACTxATAGCGACG.....................	18	1	1.00	0.00	0.00	0.00	1.00
..............................................................................GACGAGCCGAGTCATGGAAACG...	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................CAAAGCGACGAGCCGAGTC............	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_181108:455047-455131 -

43.03

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA TATCGCGATCTGAAGCTGGATAACATATTAT---TGGATCAGGAGGGCCATTG---CAAATTGGCCGATTTCGGCATGTGCAAAGAGGGCA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................ATTA---CAAATTGGGCGATT.....................	18	1	2.00	0.00	0.00	0.00	2.00
..................................................................GATTTCGGCATGTGCAAAGAGGG..	23	1	1.00	0.00	1.00	0.00	0.00
...................................................................ATTATGGCATGTGCAAAGAGG...	21	1	1.00	1.00	0.00	0.00	0.00
...........................TTAA---TGGATCAAGAGGGC...........................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................CGATTTCGGCATGTGCAAAGAGG...	23	1	1.00	0.00	1.00	0.00	0.00
...................................................................ATTATGGCATGTGCAAAGA.....	19	1	1.00	0.00	1.00	0.00	0.00
......................................................................ATGGCATGTGCAAAGAGGGCA	21	1	1.00	0.00	0.00	1.00	0.00
....................................................................TTATGGCATGTGCAAAGAGGGC.	22	1	1.00	0.00	1.00	0.00	0.00

scaffold_181108:2802336-2802364 +

16.29

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
-----------------------------------------------------------GTACACCGAAATCGGTGAGAAGGGGAATG---

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

scaffold_181130:8729316-8729341 +

16.02

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
------------------------------------------------------------TGTGCCAATATCGAGGGCGATGAAA-----A

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

droVir3 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13047:11434928-11435028 -

54.75

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCG-----------GCCGTTAATAAAAGTATGCCG------AACTCG------CAGGCGACGGATGCGCGA CACAGTGCTGGAGAGGTGGGT-GCATCCACA------------TCAGCTGCTTGATAACCATTTGTAAATGTAAATCCTCCTTTAACTCGTTTGAACAGGCGACGCATGCGCGA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................................................CGGTTAACTCGTTTGAAC.................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................................................................................AGCAxGCGACGCATGCGCG.	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...AGGGGTGGAGAGGTGGG..............................................................................................	17	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_13049:22907395-22907482 +

42.65

CACCGTGCTGGAGAG-GTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCC--GAACTCGCA-----------------GGCGACGGATGCGCGA CACCAGCGAACTGACATTCACTTTCATTTATTTATTTTTTTGAGCAGTCC----------------CATGGACTCGAAACGGCGCGCAGAGTCCTGGAAACG-------GA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................TTCATTTATTTTTATTTTTG.....................................................................	20	2	0.50	0.00	0.00	0.50	0.00	0.00

scaffold_12855:1779074-1779159 -

41.97

CACCGTGCTGGAGAGGTGAGTTTCGTACACT----TAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTC-GCAGGCGACGGATGCG---CGA
CGCCT-AATGGCGGAATG-----CATGCACCAAAATGATCAACAAAATCTGCTT-------AAGTATGTCAAAACCAACTGCCTGCAATCGCATCAGAA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13049:13666617-13666661 -

26.97

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA TT----------------------------------------------AGCAAGGATATGCACGTCAAAATTGCTGACTTTGGCCTGGCGA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................ATTGCTGACTTTGGACTGGCC.	21	1	1.00	0.00	0.00	0.00	0.00	1.00

scaffold_12822:3102164-3102200 +

24.72

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGC----AGGCGACGGATGCGCGA-
G-----------------------------------------------------------TACGCCGAAATCGGTTCGACGCGGCGCTCGCGTCTC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13042:485861-485894 -

16.85

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
AAGCTA---------------------------------------------------------GCCGATTTTGGCACCTGCATGCGCATGG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6540:30312688-30312787 +

49.25

CACCGTGCTGGAGAGGTGAG-------------------------------------------------------TTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CACAGTGCTGGAGAGGTGGGAGCATTGATTTCACCACCCATAAGACACATTCTCACAGTTTTTCTTGCTTAATTCCTTTGTA----------------------------------------------CAGGCGGCGCATGCGCGA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6680:17523342-17523418 +

29.98

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCA-----------------------------GGCGACGGATGCGCGA TTAGTAAATGGAAT--------------------------------------------TATGTATTGTACTTGTGCAGTCCTATGGATTCTAAGCGGCGCGCAGAGTCCTGGAAACGAAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................................GATTCTAAGCGGCGCGCAGA...............	20	1	1.00	1.00	0.00	0.00	0.00

scaffold_6308:662790-662846 +

29.89

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TATTGGATAGCTAT----------------------------------GGCCATTTGAAGCTAGCCGATTTTGGCACCTGCATGCGCATGG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6473:12918615-12918635 -

14.61

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TCTCGC----------------------------------------------------------------------GCGTCGTCTGCGAGG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

scaffold_6540:9137428-9137443 +

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
GGCTATGC---------------------------------------------------------------------------GCGCATCA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

droGri2 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_14624:1473562-1473665 -

47.11

CACCGTGCTGGAGAGGTGAGTTTCGTAC--------------ACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGC-------AGGCGACGGATGCGCGA CACAGTGCTGGAAAGGTGATTCAAATCCATAAGCCACAATCTTCTTAAATATTATTTTCGCT--------AATGCTATTTGTACTCGCTTTGATTAGGCGTCGCATGCGGGA	Size	Hit Count	Total Norm	V109 Male body
.ACAGTGATGGAAAGATGA.............................................................................................	18	1	6.00	6.00

scaffold_14853:116900-116996 -

42.57

CACCGTGCTGGAGAGGTGAGTTT---CGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAG-----------GCGACGGATGCGCGA
CACCATTCTGCATCGGGACATTAAGCCGGCGAATATATTCCTCGATGCTGCCGGCAATGTCAA--------ACTGGGTGACTTTGGATTGGCGCGTGTCCTGCGA

Size

Hit Count

Total Norm

V109
Male body

scaffold_15110:18179864-18179949 +

40.69

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCG-----------ACGGATGCGCGA
CAATTAACTCAAAATTCAAGTTT----------------GTGATTGTTCAACAATGTTTTTGTTGCAGTCCCATGGACTCAAAACGACGCGCAGAATCGTGG

Size

Hit Count

Total Norm

V109
Male body

scaffold_14853:8896661-8896720 -

33.71

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATA--GGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
TG-------------------------------ATTAGTAGTGAATCTAATGGGAATTGCGATTTGCAGGGTTTGCCA--AGCAGCTGCGCGC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15203:5814622-5814632 -

8.99

CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGA
CGC--------------------------------------------------------------------------------ATGGGCGC

Size

Hit Count

Total Norm

V109
Male body

None

Generated: 04/20/2012 at 05:28:41 EDT