dme-mir-1006- Best orthologs

dme-mir-1006	chr2L:16724795-16724858 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	mirtron

Legend:

   mature strand at position 16724797-16724817
   star strand at position 16724833-16724858
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2L:16724780-16724873 -		1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droSim1	chr2L:16422879-16422972 -	LASTZ	1	CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droSec1	super_7:371570-371663 -	LASTZ	1	CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droYak2	chr2R:4378132-4378225 +	LASTZ	1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droEre2	scaffold_4845:19796345-19796438 -	LASTZ	1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droEug1	scf7180000408961:299568-299661 -	LASTZ	4	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droBia1	scf7180000301468:889363-889456 -	LASTZ	4	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droTak1	scf7180000415914:451759-451852 -	LASTZ	4	CGCGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTGCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droEle1	scf7180000490579:620122-620215 +	LASTZ	4	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droRho1	scf7180000768553:40188-40281 -	LASTZ	4	CGTGTTAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droFic1	scf7180000454078:650967-651060 -	LASTZ	4	CGTGTGAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droKik1	scf7180000302643:779030-779123 +	LASTZ	4	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droAna3	scaffold_12943:3938325-3938418 +	LASTZ	1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTCCAATACCAGCTG
droBip1	scf7180000395973:155851-155944 +	LASTZ	4	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
dp4	chr4_group3:3057660-3057753 +	LASTZ	1	CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droPer1	super_1:4544383-4544476 +	LASTZ	1	CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droWil1	scaffold_180708:1783971-1784066 +	LASTZ	1	CGTGTTAATTTCCAGGTGAGTTTGAAATTGAAATGCCTAAATTGTTTTGTGTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATATCAATTA
droVir3	scaffold_12963:6536524-6536617 -	LASTZ	1	CGTGTCAACTTTCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droMoj3	scaffold_6500:25691037-25691130 -	LASTZ	1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droGri2	scaffold_15252:9753534-9753627 -	LASTZ	1	CGCGTCAATTTCCAAGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droSim1	CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droSec1	CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droYak2	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droEre2	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droEug1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droBia1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droTak1	CGCGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTGCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droEle1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droRho1	CGTGTTAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droFic1	CGTGTGAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droKik1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droAna3	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTCCAATACCAGCTG
droBip1	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
dp4	CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droPer1	CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droWil1	CGTGTTAATTTCCAGGTGAGTTTGAAATTGAAATGCCTAAATTGTTTTGTGTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATATCAATTA
droVir3	CGTGTCAACTTTCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droMoj3	CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droGri2	CGCGTCAATTTCCAAGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	241.00	20.00	161.00	27.00	33.00
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	45.00	6.00	35.00	3.00	1.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	35.00	1.00	28.00	3.00	3.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	34.00	11.00	14.00	7.00	2.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	23.00	0.00	20.00	3.00	0.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	15.00	2.00	10.00	1.00	2.00
...............GTGAGTTTGAAATTGAAATGCGTAAA.......................................................	26	1	15.00	7.00	5.00	1.00	2.00
...............GTGAGTTTGAAATTGAAATGCGT..........................................................	23	1	5.00	0.00	4.00	0.00	1.00
...............GTGAGTTTGAAATTGAAATGCG...........................................................	22	1	5.00	0.00	4.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	4.00	1.00	3.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	4.00	0.00	3.00	0.00	1.00
..........................................................TAAATTCGATTTCTTATTCATAT...............	23	1	3.00	2.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTGATTCAT.................	21	1	2.00	0.00	2.00	0.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	2.00	1.00	1.00	0.00	0.00
.........................................................TTAAATTCGATTTCTTATTC...................	20	1	2.00	0.00	1.00	0.00	1.00
...............GTGAGTTTGAAATTGAAATGCGTAAAT......................................................	27	1	2.00	0.00	0.00	2.00	0.00
..................................GCGTAAATTGTTTG--GTACA.........................................	19	1	2.00	0.00	0.00	2.00	0.00
.........................................................TTAAATTCGATTTCTTATTCATAG...............	24	1	2.00	1.00	1.00	0.00	0.00
..................................GCGTAAATTGTTTG--GTACAATT......................................	22	1	2.00	0.00	2.00	0.00	0.00
.................................TGCGTAAATTGTTTG--GTAC..........................................	19	1	2.00	0.00	0.00	2.00	0.00
..........................................................TAAATTCGATTTCTTATTCATGG...............	23	1	2.00	0.00	0.00	2.00	0.00
...........................................................AAATTCGATTTCTTATTCA..................	19	1	2.00	0.00	2.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	2.00	1.00	1.00	0.00	0.00
.........................................TTGTTTG--GTACAATTTAAATTCGAT............................	25	1	2.00	0.00	2.00	0.00	0.00
................................ATGCGTAAATTGTTTG--GTAC..........................................	20	1	2.00	0.00	2.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGC..............	24	1	2.00	1.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAG...............	19	1	2.00	0.00	1.00	0.00	1.00
..................AGTTTGAAATTGAAATGC............................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTTGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAGTTCGATTTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAAAA......................................................	27	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATCTCTTATTCATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATTGT..............	24	1	1.00	1.00	0.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGAA.............	21	1	1.00	0.00	0.00	0.00	1.00
..........................................................TAAATTCGATTTCTTATTCATT................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................ATTCGATTTCTTATTCATAG...............	20	1	1.00	0.00	1.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTACA.......................................................	26	1	1.00	1.00	0.00	0.00	0.00
..........................................................TGAATTCGATTTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
...............................AATGCGTAAATTGTTTG--GTACAAT.......................................	24	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTAGATTTCTTATTCATAT...............	23	1	1.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAA........................................................	25	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCACAGT..............	24	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTT.............	25	1	1.00	1.00	0.00	0.00	0.00
.............................................................ATTCGATTTCTTATTCATAGTT.............	22	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTA.............	25	1	1.00	0.00	1.00	0.00	0.00
...................................CGTAAATTGTTTG--GTACAATT......................................	21	1	1.00	0.00	1.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAAG.......................................................	26	1	1.00	1.00	0.00	0.00	0.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	1.00	1.00	0.00	0.00	0.00
...........................................................AAATTCGATTTCTTATTC...................	18	1	1.00	0.00	0.00	1.00	0.00
...............CTGAGTTTGAAATTGAAATGCGTAAA.......................................................	26	1	1.00	0.00	1.00	0.00	0.00
.................................TGCGTAAATTGTTTG--GTACAATT......................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................TTGAAATTGAAATGCTGAAATT.....................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATGGT..............	24	1	1.00	1.00	0.00	0.00	0.00
.........................................................CTAAATTCGATTTCTTATTCATAGT..............	25	1	1.00	1.00	0.00	0.00	0.00
..........................ATTGAAATGCGTAAATTGTTTG--GTACAAT.......................................	29	1	1.00	0.00	0.00	1.00	0.00
...............................AATGCGTAAATTGTTTG--GTACAATT......................................	25	1	1.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTA.........................................................	24	1	1.00	1.00	0.00	0.00	0.00
......................................AAATTGTTTG--GTACAATT......................................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................TTGTTTG--GTACAATTTAAATTCGATT...........................	26	1	1.00	0.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGT..............	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGG..............	24	1	1.00	0.00	0.00	1.00	0.00

droSec1

CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	322.00	47.00	13.00	262.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	274.00	87.00	88.00	99.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	193.00	18.00	61.00	114.00
...............GTGAGTTTGAAATTGAAATGCGTAAA.......................................................	26	1	97.00	29.00	62.00	6.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	72.00	6.00	19.00	47.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	53.00	3.00	0.00	50.00
...............GTGAGTTTGAAATTGAAATGCGT..........................................................	23	1	30.00	18.00	7.00	5.00
...............GTGAGTTTGAAATTGAAATGCGTAA........................................................	25	1	28.00	16.00	11.00	1.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	26.00	5.00	11.00	10.00
...............GTGAGTTTGAAATTGAAATGCGTA.........................................................	24	1	21.00	9.00	8.00	4.00
...............GTGAGTTTGAAATTGAAATGC............................................................	21	1	18.00	7.00	2.00	9.00
...............GTGAGTTTGAAATTGAAATGCGTAAAT......................................................	27	1	16.00	13.00	3.00	0.00
...............GTGAGTTTGAAATTGAAATGCG...........................................................	22	1	16.00	8.00	2.00	6.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	13.00	2.00	2.00	9.00
...........................................................AAATTCGATTTCTTATTCAT.................	20	1	12.00	1.00	0.00	11.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	10.00	0.00	1.00	9.00
..........................................................TAAATTCGATTTCTTATTCATAGTT.............	25	1	9.00	3.00	2.00	4.00
...............GTGAGTTTGAAATTGAAATGCGTAAAA......................................................	27	1	7.00	1.00	6.00	0.00
................TGAGTTTGAAATTGAAATGCGTAAA.......................................................	25	1	5.00	2.00	2.00	1.00
.........................................................TTAAATTCGATTTCTTATTCATAG...............	24	1	4.00	0.00	1.00	3.00
...............................................C--GTACGATTTAAATTCGA.............................	18	1	4.00	0.00	1.00	3.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	4.00	2.00	1.00	1.00
...............................................C--GTACAGTTTAAATTCGA.............................	18	1	4.00	0.00	1.00	3.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	3.00	0.00	0.00	3.00
...............GTGAGTTTGAAATTGAAA...............................................................	18	1	3.00	0.00	2.00	1.00

droYak2

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	132.00	19.00	13.00	39.00	44.00	17.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	97.00	18.00	11.00	9.00	12.00	47.00
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	68.00	5.00	15.00	4.00	42.00	2.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	35.00	7.00	5.00	7.00	11.00	5.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	15.00	0.00	3.00	0.00	5.00	7.00
...............GTGAGTTTGAAATTGAAATGCGTAAA.......................................................	26	1	10.00	1.00	1.00	5.00	2.00	1.00
...............GTGAGTTTGAAATTGAAATGCGT..........................................................	23	1	9.00	0.00	1.00	3.00	4.00	1.00
...............GTGAGTTTGAAATTGAAATGCGTA.........................................................	24	1	9.00	2.00	0.00	6.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAA........................................................	25	1	7.00	2.00	0.00	5.00	0.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	5.00	0.00	0.00	1.00	4.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAAAT......................................................	27	1	5.00	0.00	0.00	5.00	0.00	0.00
............................................................AATTCGATTTCTTATTCATAGT..............	22	1	5.00	2.00	2.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGCG...........................................................	22	1	5.00	0.00	0.00	4.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGC............................................................	21	1	4.00	0.00	0.00	4.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	4.00	0.00	0.00	0.00	1.00	3.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	4.00	1.00	1.00	2.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	4.00	1.00	2.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATATT..............	24	1	4.00	0.00	1.00	0.00	3.00	0.00
...............GTGAGTTTGAAATTGAAAT..............................................................	19	1	3.00	2.00	0.00	0.00	1.00	0.00
.............................................................ATTCGATTTCTTATTCATAGT..............	21	1	3.00	0.00	0.00	2.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAAATT.....................................................	28	1	3.00	0.00	0.00	3.00	0.00	0.00
.........................................................TTAAATTCGATTTCTTATTCATAGT..............	25	1	2.00	0.00	0.00	2.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	2.00	0.00	1.00	0.00	1.00	0.00
..........................................................TAAATTCGCTTTCTTATTCAT.................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTT.............	25	1	2.00	0.00	0.00	1.00	1.00	0.00
..........................................................TAAATTCGAGTTCTTATTCAT.................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	2.00	0.00	0.00	1.00	1.00	0.00
..........................ATTGAAATGCGTAAATTGTTTG--GTACAAT.......................................	29	1	2.00	0.00	0.00	2.00	0.00	0.00
..........................................................TAAATTCGATTTTTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAGTTCGATTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................TGCGTAAATTGTTTG--GTACA.........................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................ATTTAAATTCGATTTCTTATTCATAGT..............	27	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGCTTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
................................ATGCGTAAAGTGTTTG--GC............................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAA...............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAATTTGAAATTGAAATGTGT..........................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTGTTCATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................TTGAAATGCGTAAATTGTTTG--GTACAAT.......................................	28	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................TAATTCGATTTCTTATTCATAG...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...................GTTTGAAATTGAAATGCGTAA........................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAC...............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................GTTTG--GTACAATTTAAATTCGAT............................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GGGAGTTTGAAATTGAAATGCGTAAA.......................................................	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAACTTGAAATGCG...........................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..............CGTGAGTTTGAAATTGAAATGCGTAA........................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................AATTGAAATGCGTAAATTGTTTG--GTACA.........................................	28	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTTAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................ATTGAAATGCGTAAATTGTTT.................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATCTCTTATTCA..................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAAT..............	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................AAATTCGATTTCTTATTCA..................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................AAATGCGTAAATTGTTTG--GTACAAT.......................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTCAA.......................................................	26	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................ATTGAAATGCGTAAATTGTTTG--GTA...........................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATCGT..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAAC.......................................................	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...................GTTTGAAATTGAAATGCGTA.........................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTGATTTTGAAATTGAAATGCGTT.........................................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GGGAGTTTGAAATTGAAATGC............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCAT.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................AGTTTGAAATTGAAATGCGTAAAT......................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTCAC.......................................................	26	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAGA.......................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................AATGCGTAAATTGTTTG--GTACA.........................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCTATTTCTTATTCAT.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................ATTGAACTGCGTAAATGGTT..................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTTTTCGTA................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAT...............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................................TTGTTTG--GTACAATTTAAATTCGAT............................	25	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................TACATTCGATTTCTTATTCAC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................................TTCGATTTCTTATTCATAGAT.............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTTAT.......................................................	26	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGC..............	24	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................................TAAATTTGATTTCTTATTCATAG...............	23	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGTTTTCTTATTCAT.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................AATGCGTAAATTGTTTG--GTAC..........................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................GAAATTGAAATGCTGAAATTGT...................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGT..............	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGACTTCTTATTCAT.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGTG...........................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAGTTGAAATGCGTAAAT......................................................	27	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGG..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
................................ATGCGTAAATTGTTTG--GTACAAT.......................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00

droEre2

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	535.00	2.00	46.00	0.00	487.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	371.00	7.00	18.00	0.00	346.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	345.00	5.00	32.00	0.00	308.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	108.00	6.00	6.00	0.00	96.00
...............GTGAGTTTGAAATTGAAATGCGTAAA.......................................................	26	1	59.00	2.00	0.00	0.00	57.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	43.00	0.00	2.00	0.00	41.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	24.00	1.00	2.00	0.00	21.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	17.00	0.00	0.00	0.00	17.00
...............GTGAGTTTGAAATTGAAATGCG...........................................................	22	1	12.00	0.00	0.00	0.00	12.00
...............GTGAGTTTGAAATTGAAATGCGTA.........................................................	24	1	11.00	0.00	1.00	0.00	10.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	9.00	0.00	3.00	0.00	6.00
..........................................................TAAATTCGATTTCTTATTCATATT..............	24	1	8.00	1.00	3.00	0.00	4.00
...............GTGAGTTTGAAATTGAAATGCGTAA........................................................	25	1	7.00	0.00	0.00	0.00	7.00
..........................................................TAAATTCTATTTCTTATTCAT.................	21	1	7.00	0.00	0.00	0.00	7.00
...........................................................AAATTCGATTTCTTATTCAT.................	20	1	7.00	0.00	1.00	0.00	6.00
...............GTGAGTTTGAAATTGAAATGC............................................................	21	1	6.00	0.00	0.00	0.00	6.00
..........................................................TAAATTCGATTTCTTATTCATAGTT.............	25	1	6.00	0.00	1.00	0.00	5.00
..........................................................TAAATTCGATTTCTTATTCATAT...............	23	1	6.00	1.00	1.00	0.00	4.00
...............GTGAGTTTGAAATTGAAATGCGTAAAT......................................................	27	1	5.00	0.00	1.00	0.00	4.00
.........................................................TTAAATTCGATTTCTTATTCATAG...............	24	1	5.00	0.00	1.00	0.00	4.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	5.00	0.00	0.00	0.00	5.00
...............GTGAGTTTGAAATTGAAATGCGT..........................................................	23	1	4.00	0.00	0.00	0.00	4.00
..........................................................TAAATTCGATTTCTTATTCATAA...............	23	1	4.00	0.00	0.00	0.00	4.00
..........................................................TAAATTCGATTTCTTATTCATAC...............	23	1	4.00	0.00	0.00	0.00	4.00
..........................................................TAAATTCGCTTTCTTATTCAT.................	21	1	4.00	0.00	0.00	0.00	4.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	4.00	0.00	0.00	0.00	4.00
............................................................AATTCGATTTCTTATTCATAGT..............	22	1	4.00	0.00	1.00	0.00	3.00
..........................................................TAAATTCGATTTCTTATTAATAG...............	23	1	4.00	0.00	0.00	0.00	4.00
..........................................................TAAATTCGATTTCTTATTCATAAT..............	24	1	4.00	0.00	0.00	0.00	4.00
...............GTGAGTTTGAAATTGAAA...............................................................	18	1	4.00	0.00	0.00	0.00	4.00
................TGAGTTTGAAATTGAAATGCGTAAAT......................................................	26	1	3.00	0.00	0.00	0.00	3.00
..........................................................TAAATTCGATTTCTTATTAATAGT..............	24	1	3.00	0.00	0.00	0.00	3.00
..........................................................TAAATTCGATTTATTATTCAT.................	21	1	3.00	0.00	0.00	0.00	3.00
................TGAGTTTGAAATTGAAATGCGTAAA.......................................................	25	1	3.00	0.00	0.00	0.00	3.00
..........................................................TAAATTCGATTTCTTATTCATAGAA.............	25	1	3.00	0.00	0.00	0.00	3.00
..........................................................TAAATTCTATTTCTTATTCATAGT..............	24	1	3.00	0.00	0.00	0.00	3.00
..........................................................TAAATTCGATTTCTTATTCAC.................	21	1	3.00	0.00	0.00	0.00	3.00

droEug1

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG

Size

Hit Count

Total Norm

droBia1

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG

Size

Hit Count

Total Norm

droTak1

CGCGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTGCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG

Size

Hit Count

Total Norm

droEle1

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG

Size

Hit Count

Total Norm

droRho1

CGTGTTAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG

Size

Hit Count

Total Norm

droFic1

CGTGTGAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG

Size

Hit Count

Total Norm

droKik1

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG

Size

Hit Count

Total Norm

droAna3

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTCCAATACCAGCTG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	228.00	4.00	180.00	42.00	2.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	134.00	28.00	77.00	29.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	80.00	4.00	65.00	6.00	5.00
...............GTGAGTTTGAAATTGAAATGCGTAAA.......................................................	26	1	78.00	12.00	64.00	2.00	0.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	40.00	0.00	31.00	9.00	0.00
...............................................C--GTACAGTTTAAATTCGA.............................	18	1	29.00	0.00	29.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAA........................................................	25	1	22.00	13.00	5.00	2.00	2.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	22.00	1.00	12.00	7.00	2.00
...............GTGAGTTTGAAATTGAAATGCGT..........................................................	23	1	21.00	11.00	8.00	2.00	0.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	20.00	1.00	13.00	6.00	0.00
...............................................G--GTACGGTTTAAATTCGA.............................	18	1	20.00	0.00	20.00	0.00	0.00
...............................................C--GTACGATTTAAATTCGA.............................	18	1	19.00	0.00	19.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTA.........................................................	24	1	16.00	5.00	10.00	1.00	0.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	15.00	2.00	11.00	2.00	0.00
...............GTGAGTTTGAAATTGAAATGCG...........................................................	22	1	15.00	11.00	4.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGC............................................................	21	1	12.00	1.00	11.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAAAT......................................................	27	1	12.00	8.00	3.00	1.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	11.00	1.00	6.00	4.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	8.00	0.00	7.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	7.00	0.00	6.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTT.............	25	1	5.00	0.00	5.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAAAA......................................................	27	1	5.00	0.00	5.00	0.00	0.00
...........................................................AAATTCGATTTCTTATTCAT.................	20	1	5.00	0.00	4.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCAA.................	21	1	3.00	0.00	3.00	0.00	0.00

droBip1

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG

Size

Hit Count

Total Norm

dp4

CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	137.00	10.00	15.00	112.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	125.00	12.00	50.00	61.00	2.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	80.00	38.00	2.00	40.00	0.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	59.00	4.00	3.00	51.00	1.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	45.00	2.00	15.00	28.00	0.00
...............GTGAGTTTGAAATTGAAATGTGT..........................................................	23	1	38.00	26.00	0.00	12.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAAA.......................................................	26	1	28.00	21.00	4.00	3.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTA.........................................................	24	1	11.00	6.00	3.00	2.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	10.00	4.00	0.00	6.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAA........................................................	25	1	6.00	6.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAAAT......................................................	27	1	4.00	4.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGTG...........................................................	22	1	4.00	0.00	2.00	2.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	3.00	1.00	0.00	1.00	1.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	3.00	0.00	1.00	2.00	0.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	3.00	0.00	0.00	3.00	0.00
.........................................................TTAAATTCGATTTCTTATTCA..................	21	1	2.00	0.00	0.00	2.00	0.00
.........................................................CTAAATTCGATTTCTTATTCA..................	21	1	2.00	0.00	0.00	2.00	0.00
.............................................................ATTCGATTTCTTATTCATAGTT.............	22	1	2.00	1.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTT.............	25	1	2.00	0.00	0.00	2.00	0.00
..........................................................TAAGTTCGATTTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGCTTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGT............................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTGTTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
...............GTGAGGTTGAAATTGAAATGTGTAAA.......................................................	26	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATGTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGGTTTCTTATTTA..................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGAGTTCTTATTCATAGT..............	24	1	1.00	0.00	1.00	0.00	0.00
.............................GAAATGTGTAAATTGTTTG--TGCCA.........................................	24	1	1.00	0.00	1.00	0.00	0.00
................TGAGATTGAAACTGAAATGT............................................................	20	1	1.00	0.00	1.00	0.00	0.00
...............GTGCGTTTGAAATTGAAATGTGTA.........................................................	24	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGAxTTCTTATTCATAGT..............	23	1	1.00	1.00	0.00	0.00	0.00
............................................................AATTCGATTTCTTATTCATAG...............	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTGTTAGTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAATTTCGATTGCTTATTCATA................	22	1	1.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAAT..............................................................	19	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTATTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTTATAGT..............	24	1	1.00	0.00	0.00	1.00	0.00
...............GGGAGTTTGAAATTGAAATGTGTA.........................................................	24	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCTTAG...............	23	1	1.00	0.00	0.00	1.00	0.00
..........................................................TCAATTCGATTTCTTATTCCTAG...............	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTxTTCAT.................	20	1	1.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGCGTAA........................................................	25	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCCTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGCTTTCTTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
...............GTGACTTTGAAATTGAAATGTGT..........................................................	23	1	1.00	0.00	0.00	1.00	0.00
................TGAGTTTGAAATTGAAATGTGTA.........................................................	23	1	1.00	1.00	0.00	0.00	0.00
.............................................................ATACGATTTCTTATTCATAGAT.............	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATGCGATTTCTTATTCA..................	20	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAAATCGATTTCTTATTCA..................	20	1	1.00	0.00	0.00	1.00	0.00
.........................................TTGTTTG--TGCCAATTTAAATTCG..............................	23	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATCGT..............	24	1	1.00	0.00	0.00	1.00	0.00
................TGAGTTTGAAATTGAAATGTGTAA........................................................	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTATTATTCATA................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................AAATTCGATTTCTTATTCATA................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGGTTTCTTATTCATA................	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAGATTCTATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................TATATTCGATTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAGATTCGATTTCTTCTTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTGCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAGATTCGATTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	1.00	0.00
..........................................................CAAATTCGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATGCGCTTTCTTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAT...............	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATACT..............	24	1	1.00	0.00	0.00	1.00	0.00
...............GTGAGGTTGATATTGAAATGTGTAA........................................................	25	1	1.00	0.00	0.00	1.00	0.00
.............................................................ATTCGATTTCTTATTCATAGT..............	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGTTTTCTTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATGCGATTTCTTATGCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
................TGAGTTTGAAATTGAAATGTGTAAAA......................................................	26	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTTTTATTCATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	1.00	0.00
.........................................................TTAAATTCGATTTCTTATTCATAT...............	24	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTCTTCATAG...............	23	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCAC.................	21	1	1.00	0.00	0.00	1.00	0.00
.........................................................CTAAATTCGATTTCTTATTCATA................	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTGGATTTCTTATTCCT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................GAAATTAGATTTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00

droPer1

CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	200.00	2.00	6.00	96.00	96.00	0.00
...............GTGAGTTTGAAATTGAAATGTGT..........................................................	23	1	132.00	114.00	0.00	3.00	15.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	117.00	1.00	18.00	70.00	13.00	15.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	98.00	8.00	1.00	43.00	46.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAAA.......................................................	26	1	95.00	75.00	1.00	5.00	14.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTA.........................................................	24	1	44.00	39.00	1.00	1.00	3.00	0.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	36.00	0.00	0.00	27.00	9.00	0.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	23.00	1.00	1.00	12.00	9.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAA........................................................	25	1	21.00	18.00	0.00	0.00	3.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAAAT......................................................	27	1	12.00	9.00	0.00	0.00	3.00	0.00
...............GTGAGTTTGAAATTGAAATGTG...........................................................	22	1	11.00	8.00	0.00	0.00	3.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	10.00	0.00	0.00	4.00	6.00	0.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	8.00	0.00	0.00	5.00	3.00	0.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	4.00	0.00	0.00	3.00	1.00	0.00
.........................................................TTAAATTCGATTTCTTATTCA..................	21	1	3.00	0.00	0.00	3.00	0.00	0.00
.............................................................ATTCGATTTCTTATTCATAGTT.............	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAT...............	23	1	3.00	0.00	0.00	2.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATATT..............	24	1	3.00	0.00	0.00	1.00	2.00	0.00

droWil1

CGTGTTAATTTCCAGGTGAGTTTGAAATTGAAATGCCTAAATTGTTTTGTGTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATATCAATTA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	755.00	6.00	305.00	269.00	175.00
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	576.00	6.00	44.00	490.00	36.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	574.00	15.00	286.00	250.00	23.00
...............GTGAGTTTGAAATTGAAATGCCTAAA.......................................................	26	1	340.00	6.00	200.00	123.00	11.00
...............GTGAGTTTGAAATTGAAATGCCT..........................................................	23	1	186.00	6.00	49.00	110.00	21.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	120.00	1.00	44.00	64.00	11.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	79.00	1.00	0.00	57.00	21.00
...............GTGAGTTTGAAATTGAAATGCCTA.........................................................	24	1	65.00	7.00	49.00	9.00	0.00
...............GTGAGTTTGAAATTGAAATGCCTAA........................................................	25	1	47.00	3.00	37.00	7.00	0.00
...............GTGAGTTTGAAATTGAAATGCCTAAAA......................................................	27	1	34.00	0.00	24.00	10.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	25.00	0.00	7.00	16.00	2.00
...............GTGAGTTTGAAATTGAAATGCC...........................................................	22	1	24.00	0.00	4.00	12.00	8.00
...............GTGAGTTTGAAATTGAAATGCCTAAAT......................................................	27	1	22.00	3.00	12.00	7.00	0.00
.................................................TGTACGGTTTAAATTCGA.............................	18	1	20.00	0.00	14.00	6.00	0.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	15.00	0.00	11.00	4.00	0.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	14.00	0.00	6.00	8.00	0.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	14.00	0.00	5.00	9.00	0.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	12.00	0.00	0.00	9.00	3.00
.................................................CGTACAGTTTAAATTCGA.............................	18	1	10.00	0.00	3.00	7.00	0.00
...............GTGAGTTTGAAATTGAAATGC............................................................	21	1	9.00	3.00	1.00	5.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTT.............	25	1	7.00	0.00	3.00	4.00	0.00
.........................................................TTAAATTCGATTTCTTATTCATAG...............	24	1	7.00	0.00	1.00	2.00	4.00
..............................................................TTCGATTTCTTATTCATAGT..............	20	1	6.00	0.00	1.00	5.00	0.00
.........................................................TTAAATTCGATTTCTTATTCATA................	23	1	6.00	0.00	4.00	2.00	0.00
............................................................AATTCGATTTCTTATTCATAGT..............	22	1	6.00	0.00	3.00	3.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	5.00	0.00	3.00	2.00	0.00
.........................................................TTAAATTCGATTTCTTATTCATAGT..............	25	1	5.00	0.00	2.00	2.00	1.00
.................................................CGTACGATTTAAATTCGA.............................	18	1	5.00	0.00	4.00	1.00	0.00
...............GTGAGTTTGAAATTGAAA...............................................................	18	1	5.00	0.00	4.00	1.00	0.00
...........................................................AAATTCGATTTCTTATTCAT.................	20	1	4.00	0.00	1.00	3.00	0.00
..........................................................TAAATTCGATTTCTTATTAAT.................	21	1	4.00	0.00	0.00	4.00	0.00
...............GTGAGTTTGAAATTGAAATGCCC..........................................................	23	1	4.00	0.00	0.00	0.00	4.00
..........................................................TAAATTTGATTTCTTATTCATAGT..............	24	1	4.00	0.00	2.00	2.00	0.00
...............GTGAGTTTGAAATTGAAATGCCTAAATT.....................................................	28	1	3.00	3.00	0.00	0.00	0.00
..........................................................TAAATTCGGTTTCTTATTCATAG...............	23	1	3.00	0.00	0.00	2.00	1.00
..........................................................CAAATTCGATTTCTTATTCATAG...............	23	1	3.00	0.00	0.00	3.00	0.00
.............................................................ATTCGATTTCTTATTCATAGTT.............	22	1	3.00	0.00	2.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTA.............	25	1	3.00	0.00	1.00	0.00	2.00
...........................................................TAATTCGATTTCTTATTCATAGT..............	23	1	3.00	0.00	2.00	1.00	0.00

droVir3

CGTGTCAACTTTCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	205.00	36.00	163.00	1.00	1.00	4.00
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	109.00	44.00	58.00	4.00	0.00	3.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	87.00	7.00	76.00	0.00	0.00	4.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	80.00	12.00	34.00	4.00	10.00	20.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	42.00	13.00	28.00	0.00	0.00	1.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	11.00	0.00	8.00	0.00	0.00	3.00
...............GTGAGTTTGAAATTGAAATATGT..........................................................	23	1	8.00	7.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATATGTAAA.......................................................	26	1	6.00	5.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATC................	22	1	5.00	3.00	2.00	0.00	0.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	5.00	3.00	0.00	0.00	0.00	2.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	4.00	0.00	1.00	0.00	1.00	2.00
..........................................................TAAATTCGATTTCTTATTCATAGTC.............	25	1	4.00	4.00	0.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATATG...........................................................	22	1	4.00	1.00	2.00	0.00	0.00	1.00
..........................................................TAAATTAGATTTCTTATTCAT.................	21	1	4.00	0.00	4.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATATGTA.........................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
.............................................................ATTCGATTTCTTATTCATAGTT.............	22	1	3.00	1.00	1.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.........................................................TTAAATTCGATTTCTTATTCA..................	21	1	2.00	0.00	2.00	0.00	0.00	0.00
..........................................................TAAATTCGCTTTCTTATTCAT.................	21	1	2.00	0.00	2.00	0.00	0.00	0.00
..........................................................TAAATTCTATTTCTTATTCAT.................	21	1	2.00	0.00	2.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATATGTAAAT......................................................	27	1	2.00	2.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATT....................	18	1	2.00	0.00	2.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTAGTCAT.................	21	1	2.00	0.00	2.00	0.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCA..................	20	1	2.00	0.00	2.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTGTTCAT.................	21	1	2.00	0.00	2.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATATT..............	24	1	2.00	0.00	0.00	2.00	0.00	0.00
..........................................................TAAGTTCGATTTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCATAGG..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTACTCATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATGCATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TGAATTCGATTTCTTATTCA..................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTATTATTCATAGT..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGTTTTCTTATGCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCATA................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTCTTAATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAACTGCGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAC...............	23	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAAGTCGATTTCTTATTCA..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................................TGGATTCGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................TTAAATTCGATTTCTTATTCATAG...............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATGTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATGCGATGTCTTATTC...................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTGCTTATTCATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATCGT..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................GAAATTCGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCAATTTCTTATTCATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATGCGATCTCTTATTCATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTATTATTCATAT...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGAGTTCTTATTCA..................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATGTCTTATTCCTA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................CTAAATTCGATTTCTTATTCAT.................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................................AATTCGATTTCTTATTCATAGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATGTCTTATTCATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TGAATTCGTTTTCTTATTCATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAT...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................................TAAATTCGATTTCTTATTACTAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATATTT..........................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................TTAAATTTGATTTCTTATTCAC.................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCTATTTCTTATTCATA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCGTAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTGCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................CTAAATTCGATTTCTTATTCATA................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................AATATGTAAATTxTTTG--GAACA.........................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTAATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
................TGAGTTTGAAATTGAAATATGTAAA.......................................................	25	1	1.00	0.00	1.00	0.00	0.00	0.00
................TGAGTTTGAAATTGAAATATGTC.........................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGAGTTCTTATTCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTATTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAGTTCGATTTCTTATTCATAGT..............	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................AAATTCGATTTCTTATACAT.................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCACAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTAGATTTCTTATTCATAGT..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATATGTAA........................................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTGAGATTGAAATTGAAATATGTAA........................................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCACAGT..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
................................ATATGTAAATTxTTTG--GAACA.........................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................TTAACTTCGATTTCTTATTCA..................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTAAGTTTGAAATTGAAATATA...........................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................AAATTCGATTTCTTATTCA..................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAGTTCGATTTCTTATTCCT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGAGTTGTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCC..................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
................TGAGTTTGAAATTGAAATATGTAAAT......................................................	26	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................CAAATTCGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATCAGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGATATATGT..........................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATAT............................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................CAAATTCTATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGACTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTACTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATCCATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGG..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00

droMoj3

CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	221.00	69.00	96.00	35.00	21.00
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	176.00	19.00	102.00	50.00	5.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	84.00	10.00	21.00	11.00	42.00
...............GTGAGTTTGAAATTGAAATGTGTAAA.......................................................	26	1	82.00	70.00	6.00	2.00	4.00
...............GTGAGTTTGAAATTGAAATGTGT..........................................................	23	1	50.00	33.00	11.00	5.00	1.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	29.00	3.00	18.00	4.00	4.00
...............GTGAGTTTGAAATTGAAATGTGTA.........................................................	24	1	29.00	24.00	2.00	0.00	3.00
..........................................................TAAATTCGATTTCTTATTCA..................	20	1	24.00	7.00	11.00	4.00	2.00
...............GTGAGTTTGAAATTGAAATGTGTAA........................................................	25	1	21.00	18.00	1.00	1.00	1.00
..........................................................TAAATTCGATTTCTTATTCATC................	22	1	10.00	4.00	3.00	3.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTC.............	25	1	9.00	6.00	1.00	2.00	0.00
..............................................................TTCGATTTCTTATTCATAGTTT............	22	1	8.00	1.00	3.00	3.00	1.00
...............GTGAGTTTGAAATTGAAATGTGTAAATT.....................................................	28	1	6.00	6.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTC...................	19	1	5.00	0.00	4.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGA..............	24	1	5.00	0.00	1.00	2.00	2.00
..............................................................TTCGATTTCTTATTCATAGTT.............	21	1	4.00	0.00	1.00	3.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAAAT......................................................	27	1	4.00	4.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATATT..............	24	1	4.00	0.00	2.00	2.00	0.00
..........................................................TAAATTCGATTTCTTATTCATCGT..............	24	1	3.00	0.00	1.00	2.00	0.00
...............GTGAGTTTGAAATTGAAATGT............................................................	21	1	2.00	2.00	0.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCATAGT..............	24	1	2.00	0.00	2.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCTT.................	21	1	2.00	0.00	2.00	0.00	0.00
..........................................................TAAATCCGATTTCTTATTCATAGT..............	24	1	2.00	1.00	1.00	0.00	0.00
..........................................................TAAATTCAATTTCTTATTCATAGT..............	24	1	2.00	0.00	0.00	2.00	0.00
...........................................................AAATTCGATTTCTTATTCATAGT..............	23	1	2.00	1.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTC.........................................................	24	1	2.00	2.00	0.00	0.00	0.00
..................................................GTACGGTTTAAATTCGA.............................	17	1	2.00	0.00	2.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGTC.............	21	1	2.00	0.00	1.00	1.00	0.00
...............GTGAGTTTGAAATTGAAATGTG...........................................................	22	1	2.00	1.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGATT............	22	1	2.00	0.00	0.00	1.00	1.00
..........................................................TAAATTCGATTTCTTATGCATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCGTATTCATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTAGATTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............GTGAGTTTGAAATTGAAATGTGTAGA.......................................................	26	1	1.00	0.00	0.00	0.00	1.00
..............................................................TTCGATTTCTTATTCATAGA..............	20	1	1.00	0.00	0.00	0.00	1.00
..........................................................CAAATTCGATTTCTTATTCATA................	22	1	1.00	0.00	1.00	0.00	0.00
................................ATGTGTAAATTGTTTG--GTACAATT......................................	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAGTTCGATTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00
...............GTGTGTTTGAAATTGAAATGTGTAAA.......................................................	26	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCCTAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............GTGAGTTTGGAATTGAAATGTGT..........................................................	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TCAATTCGATTTCTTATTCATAGT..............	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATACGATTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	0.00	1.00
..........................................................TAAATGCGATTTCTTATTC...................	19	1	1.00	0.00	1.00	0.00	0.00
...............GTGAGTCTGAAATTGAAATGTGTA.........................................................	24	1	1.00	1.00	0.00	0.00	0.00
...............................AATGTGTAAATTGTTTG--GTA...........................................	20	1	1.00	1.00	0.00	0.00	0.00
.........................................................TTAAATTCGATTTCTTATTCAT.................	22	1	1.00	0.00	1.00	0.00	0.00
..........................................................TACATTCGATTTCTTATTCATAGT..............	24	1	1.00	0.00	1.00	0.00	0.00
...............GTGAGTTTGAAATTTAAATGTGTAAAT......................................................	27	1	1.00	1.00	0.00	0.00	0.00
...............GTGAGGTTGAAATTGAAAGGTGT..........................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTGCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGCTTTCTTATTCATAGT..............	24	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCCT.................	21	1	1.00	0.00	0.00	1.00	0.00
..............................................................TTCGATTTCTTATTCATAGATA............	22	1	1.00	0.00	0.00	0.00	1.00
..................AGTTTGAAATTGAAATGTGT..........................................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGTTTTCTTATTCATAG...............	23	1	1.00	0.00	0.00	0.00	1.00
..........................................................TAAATTCGATTTCTTATTCATAT...............	23	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATACT..............	24	1	1.00	0.00	0.00	1.00	0.00
.............................................................ATTCGATTTCTTATTCATAGT..............	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................TGAATTCGATTTCTTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTAGAGTTCTTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATGCATA................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................TAATTCGATTTCTTATTCATAGT..............	23	1	1.00	1.00	0.00	0.00	0.00
................................ATATGTAAATTATTTG--GT............................................	18	1	1.00	0.00	0.00	0.00	1.00
..........................................................TAATTTCCATTTCTTATTCATA................	22	1	1.00	0.00	0.00	0.00	1.00
...............GGGAGTTTGAAATTGAAATGTGTAAA.......................................................	26	1	1.00	0.00	0.00	0.00	1.00
..............................................................TTCGATTTTTTATTCATAGTT.............	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTTT............	26	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCTATTTCTTATTCAC.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTAATAG...............	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGAGTTTTTATTCA..................	20	1	1.00	0.00	1.00	0.00	0.00
...............GGGAGTTTGAAATTGAAATGTGTA.........................................................	24	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCATATTT.............	25	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTTATTCGTAGT..............	24	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGCTTTCTTATTCATA................	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATAGTA.............	25	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTGCTTATTCATT................	22	1	1.00	0.00	0.00	0.00	1.00
...............GTGAGTTTGACATTGAAATGTGT..........................................................	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATGCGATTTCTTATTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
...............GTGAGTTTGAAATTGCATTGTGT..........................................................	23	1	1.00	0.00	1.00	0.00	0.00
...............GTGAGTTTGAAATTGAAATGTGTAAATC.....................................................	28	1	1.00	1.00	0.00	0.00	0.00
..........................................................TAAATTCGATTTCTTCTTCAT.................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGATTTCTTATTCATGGT..............	24	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGATTTCTCATTAAT.................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................G--GTACGGTTTAAATTCGA.............................	18	1	1.00	0.00	0.00	1.00	0.00
.........................................TTGTTTG--GTACAATTTAAATTCGATT...........................	26	1	1.00	1.00	0.00	0.00	0.00
..........................................................CACATTCGATTTCTTATTCA..................	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................ATTCGATTTCTTATTAATATG..............	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGGTTTCTTATTCATAGT..............	24	1	1.00	0.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAGT..............	20	1	1.00	0.00	1.00	0.00	0.00
...............................................C--GTACAGTTTAAATTCGA.............................	18	1	1.00	0.00	0.00	1.00	0.00
..........................................................TAAATTCGACTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00
..............................................................TTCGATTTCTTATTCATAG...............	19	1	1.00	0.00	0.00	0.00	1.00
..........................................................TAAATTCGATTTCTTCTTCATAGT..............	24	1	1.00	0.00	1.00	0.00	0.00
..............................................................CTCGATTTCTTATTCATAGT..............	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................TAAATTCGTGTTCTTATTCAT.................	21	1	1.00	0.00	1.00	0.00	0.00

droGri2

CGCGTCAATTTCCAAGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG	Size	Hit Count	Total Norm	V109 Male body
..........................................................TAAATTCGATTTCTTATTCATAGT..............	24	1	14.00	14.00
...............GTGAGTTTGAAATTGAAATGTGTAAA.......................................................	26	1	9.00	9.00
...............GTGAGTTTGAAATTGAAATGTGT..........................................................	23	1	7.00	7.00
...............GTGAGTTTGAAATTGAAATGTGTAAAT......................................................	27	1	3.00	3.00
..........................................................TAAATTCGATTTCTTATTCATAG...............	23	1	3.00	3.00
...............GTGAGTTTGAAATTGAAATGTGTAAAA......................................................	27	1	2.00	2.00
..........................................................TAAATTCGATTTCTTATTCATA................	22	1	2.00	2.00
...............GTGAGTTTGAAATTGAAATGT............................................................	21	1	1.00	1.00
...............GTGAGTTTGAAATTGAAATGTGTAA........................................................	25	1	1.00	1.00
..........................................................TAAATTCGATTTCTTATTCAT.................	21	1	1.00	1.00
...............GTGAGTTTGAAATTGAAATGTGTA.........................................................	24	1	1.00	1.00
................TGAGTTTGAAATTGAAATGTGT..........................................................	22	1	1.00	1.00
...............GTGAGTTTGAAGTTGAAATGTGTAAA.......................................................	26	1	1.00	1.00
...............GTGAGTTTGAAATTGAAATGTG...........................................................	22	1	1.00	1.00
..........................................................TAAATTCGTTTTCTTATTCATAG...............	23	1	1.00	1.00
...........................TTGAAATGTGTAAATTGTTTG--..............................................	21	1	1.00	1.00
...............GTGAGTTTGAAATTGAAATATGT..........................................................	23	1	1.00	1.00

Generated: 04/20/2012 at 05:22:07 EDT

dme-mir-1006

chr2L:16724795-16724858 -

Known_mirbase

mirtron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup