Possible Orthologs for dme-mir-1005

droSim1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:4265544-4265633 +

94.54

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CTACCATTCTGACCTGTGAGTTGATCGATTTCGAGTTTTTGGC-CACAAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................................TCTGGAATCTTTAATTCGCAG...............	21	1	196.00	5.00	115.00	15.00	61.00
.......................................................TCTGGAATCTTTAATTCGC.................	19	1	37.00	0.00	37.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAGT..............	22	1	13.00	0.00	9.00	0.00	4.00
.......................................................TCTGGAATCTTTAATTCGCA................	20	1	10.00	0.00	9.00	0.00	1.00
...............GTGAGTTGATCGATTTCGAGTT......................................................	22	1	7.00	1.00	0.00	0.00	6.00
.......................................................TCTGGAATCTTTAATTCGCT................	20	1	3.00	0.00	3.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAGG..............	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................TCTGGAATCTTTAATTCGCAC...............	21	1	3.00	0.00	2.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCGCAGA..............	22	1	2.00	1.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAGTA.............	23	1	2.00	0.00	1.00	0.00	1.00
.......................................................TCTGGAATTTTTAATTCGCAG...............	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAA...............	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGTAATCTTTAATTCGCAGT..............	22	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGGATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCCCA................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCGG...............	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAGTT.............	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTCGAATCTTTAATTCGCAG...............	21	1	1.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTAGCAG...............	21	1	1.00	0.00	1.00	0.00	0.00
..................AGTTGATCGATTTCGAGTTTTTGGC-...............................................	25	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATATTTAATTCGCAG...............	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGA.................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCG..................	18	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAGC..............	22	1	1.00	0.00	1.00	0.00	0.00

chr2L:9731164-9731253 -

54.03

CCACCATTCTGACCTGTGAGT------TGATCGATTTCGAGGTTTTGGCACA----------CGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTAAGCTTACTCTAGTCAATTTCGTAG-----ACATATTAACTTATTTGAACATCATTTGA------------CCAGTCCCCATGGACATCT

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2L:2700849-2700940 +

49.81

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGA-------ATCTTTAATTC----------GCAGTTCCCACCGAAATGT CGGGCATATTGAGATGTAAGTCGG----GATGGG------------GGAGTGCATACTATGTGCCTCTTTCTATAATACGATGCGTGTTACAGATCCCGCCGAAATAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................G------------GGTGTGCACACTATGTG.............................................	18	1	1.00	1.00	0.00	0.00	0.00

chr2L:124479-124569 -

46.77

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCAC-CGAAATGT TTACGATCCTATCATGTAAGGAAACCAGTTTGATATTCCTTTCTC-TGTAGTTAATGTATTATTTTGTGTGTTCTAGTCCCGCTTGAGATGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................TATTCGTTTCTC-TGTATT........................................	18	1	1.00	0.00	0.00	1.00	0.00

chr2L:3233315-3233398 -

46.67

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
GCATACTGGTGAAGTGTAAGTA--TGGAAAATGAG-----TGAATGGAAATGTAGTTATCATTCTATCGCCCGCAGTTCCGCTGGAGTTCC

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2L:1740061-1740086 +

20.22

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
-----------------------------------------------------------------TTTATCCGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2L:1738975-1738999 +

15.73

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGCT------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2L:3229211-3229240 -

7.41

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTTCGATCCTGCTGTGCATGCAG---GACTCTG----------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_5:2441095-2441185 +

95.65

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACAAATGTAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................................TCTGGAATCTTTAATTCGCAG...............	21	1	309.00	25.00	161.00	123.00
.......................................................TCTGGAATCTTTAATTCGCAGT..............	22	1	45.00	8.00	26.00	11.00
...............GTGAGTTGATCGATTTCGAGGTT.....................................................	23	1	43.00	1.00	38.00	4.00
.......................................................TCTGGAATCTTTAATTCGCA................	20	1	28.00	2.00	13.00	13.00
.......................................................TCTGGAATCTTTAATTCGCAGA..............	22	1	19.00	1.00	7.00	11.00
.......................................................TCTGGAATCTTTAATTCGC.................	19	1	12.00	0.00	0.00	12.00
.......................................................TCTGGAATCTTTAATTCGCAGTT.............	23	1	9.00	5.00	1.00	3.00
.......................................................TCTGGAATCTTTAATTCGCAGTA.............	23	1	6.00	1.00	1.00	4.00
...............GTGAGTTGATCGATTTCGAGGT......................................................	22	1	4.00	0.00	4.00	0.00
.......................................................TCTGGAATCTTTAATTCG..................	18	1	3.00	0.00	0.00	3.00
.......................................................TCTAGAATCTTTAATTCGCAG...............	21	1	2.00	0.00	2.00	0.00
.......................................................TTTGGAATCTTTAATTCGCAGT..............	22	1	2.00	0.00	2.00	0.00
.......................................................CCTGGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTTGCAG...............	21	1	1.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCCCA................	20	1	1.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTGATTCGC.................	19	1	1.00	0.00	0.00	1.00
.................GAGTTGATCGATTTCGAGGT......................................................	20	1	1.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATCCGCAG...............	21	1	1.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCCCAG...............	21	1	1.00	0.00	0.00	1.00
........................................................CTGGAATCTTTAATTCGCAGT..............	21	1	1.00	0.00	1.00	0.00
.......................................................TCTGCAATCTTTAATTCGCAGT..............	22	1	1.00	1.00	0.00	0.00
......................................................CTCTGGAATCTTTAATTCGCAGT..............	23	1	1.00	0.00	0.00	1.00
...............GTGAGTTGATCGATTTCGAGG.......................................................	21	1	1.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCGCAGC..............	22	1	1.00	0.00	1.00	0.00
...............GTGAGTTGATCGATTTCGAGATT.....................................................	23	1	1.00	0.00	1.00	0.00
.......................................................TCTGGAATCTATAATTCGCAG...............	21	1	1.00	0.00	1.00	0.00
.......................................................TCCGGAATCTTTAATTCGCAG...............	21	1	1.00	1.00	0.00	0.00
.......................................................TCTGCAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCTCAGA..............	22	1	1.00	0.00	0.00	1.00
.......................................................TCTGGAATCTCTAATTCGCAG...............	21	1	1.00	1.00	0.00	0.00
...............GTGAGTTGATTGATTTCGAGGTT.....................................................	23	1	1.00	0.00	1.00	0.00
...............GTGAGTTGACCGATTTCGAGGTTT....................................................	24	1	1.00	0.00	1.00	0.00
.......................................................TCTTGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	1.00
.......................................................TCTGTAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	1.00
...............GTGAGTTGATCGATTTCGAG........................................................	20	1	1.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTACTTCGCAG...............	21	1	1.00	0.00	1.00	0.00
.......................................................TCTGGAATCCTTAATTCGCAG...............	21	1	1.00	0.00	0.00	1.00

super_0:3822135-3822220 +

59.62

CCACCATTCTGACCTGTGAGTT-GATCGATTTCGAGGTTTTGGCACACGAATA--TAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CC---ATTTTGAGCTGTAAGTGTTTTGGATTTCTA---TTTCGTACTTGTATACTTAATCTGAAGA--TTATCCTGCAGATCCCGCTGAGGTGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...........................GATTTCTA---TTGCxTACTTGT............................................	19	1	1.00	0.00	1.00	0.00

super_3:5388423-5388512 -

53.01

CCACCATTCTGACCTGTGAGTTGA-TCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCG-CAGTTCCCACCGAAATGT TGACTGTTCTGACTTGTAAGCTTACTCTAGTTGATTTCCTAGACATATTAACTTATTTGAATATC---ATTTGACCAGTCCCCATGGACATAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................................CTTATTTGAATATC---ATTTGACCAG...............	24	1	1.00	0.00	1.00	0.00

super_14:122650-122740 -

46.77

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCAC-CGAAATGT TTACGATCCTATCATGTAAGGAAACCAGTTTGATATTCCTTTCTC-TGTAGTTAATATATTATTTTGTGTGTTCTAGTCCCGCTTGAGATGC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................ATATTATTTTGTGTTATC..................	18	1	4.00	0.00	4.00	0.00
......................................................................GTTCTAxTCCCGCTAGAGA...	18	1	2.00	0.00	0.00	2.00
......................................................................GTTCAAGTCCCGGTTGAGA...	19	1	1.00	1.00	0.00	0.00

super_5:904668-904759 +

46.51

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGA---ATCTTTAATTCG----------CAGTTCCCACCGAAATGT CGGGCATATTGAGATGTAAGTCGG------------GATGGGGGAGCGCATACTATGTGCCTCTTTCTATAATACGATGCGTGTTACAGATCCCGCCGAAATAG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........................................................................AGGATGCGTGTTxCAGATC............	18	1	1.00	1.00	0.00	0.00

super_5:1438305-1438388 -

45.64

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT GCATATTGGTGAAGTGTAAGT--ATGGAAAATGAGTGAAT-----GGAAAAGTAGTTATCATTCTATCGCCCGCAGTTCCGCTGGAGTTCC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................TATCATTCTATCGCCCGCAG...............	20	1	1.00	0.00	1.00	0.00

super_10:2445340-2445433 -

37.87

CCACCAT------------------------------------------TCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CCACGATTAATGTAAGTCTTCCTTAGAATATTGCAATAATTGAGATTCCTCTTTCTCATGAATTATTCGATTTAGGTGTT---------------------------------------CACCTCAGAGCTGC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........ATGGAAGTCTTCCTCAGA..........................................................................................................	18	1	1.00	0.00	1.00	0.00

super_14:1682982-1683007 +

20.22

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
-----------------------------------------------------------------TTTATCCGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_14:1681941-1681965 +

15.73

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGCT------------------------------------------------------------------

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_5:1434213-1434242 -

7.78

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCTGCTGTGCATGCAG---GACTCGG----------------------------------------------------------

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

droYak2 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:4375638-4375728 +

93.5

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCAGCCAAAAATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................TCTGGAATCTTTAATTCGCAG...............	21	1	579.00	18.00	79.00	9.00	234.00	239.00
.......................................................TCTGGAATCTTTAATTCGCAGT..............	22	1	135.00	7.00	25.00	24.00	55.00	24.00
.......................................................TCTGGAATCTTTAATTCGC.................	19	1	73.00	0.00	12.00	0.00	25.00	36.00
.......................................................TCTGGAATCTTTAATTCGCA................	20	1	73.00	0.00	4.00	8.00	41.00	20.00
.......................................................TCTGGAATCTTTAATTCGCAGTT.............	23	1	42.00	5.00	5.00	7.00	19.00	6.00
...............GTGAGTTGATCGATTTCGAGGTT.....................................................	23	1	13.00	5.00	0.00	1.00	1.00	6.00
.......................................................TCTGGAATCTTTAATTCGCCG...............	21	1	12.00	1.00	1.00	0.00	7.00	3.00
.......................................................TCTGGAATCTTTAATTCGCAGA..............	22	1	11.00	0.00	1.00	2.00	6.00	2.00
.......................................................TCTGGGATCTTTAATTCGCAG...............	21	1	6.00	1.00	2.00	0.00	3.00	0.00
.......................................................TCTGGAATCTTTAATTCG..................	18	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................TCTGGAATCTTTAATTCGCAC...............	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................TCTGGAATCTTTAATTCGCAGC..............	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................TCTGGAATCTTTAATTCGCAGTA.............	23	1	3.00	1.00	1.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAT...............	21	1	3.00	0.00	2.00	0.00	1.00	0.00
.......................................................CCTGGAATCTTTAATTCGCAG...............	21	1	2.00	0.00	0.00	0.00	2.00	0.00
.......................................................TCTGGAATCTTTAATTCTCAG...............	21	1	2.00	0.00	0.00	0.00	2.00	0.00
...............GTGAGTTGATCGATTTCGAGG.......................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................TCTGGAATCTTTAATTCACAG...............	21	1	2.00	1.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAA...............	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................TCTGGTATATTTAATTCGCAG...............	21	1	2.00	0.00	0.00	0.00	2.00	0.00
.......................................................TCTGGAGTCTTTAATTCGCAG...............	21	1	2.00	0.00	0.00	0.00	2.00	0.00
.......................................................TCCGGAATCTTTAATTCGCAG...............	21	1	2.00	1.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCGG...............	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................TCTGGAATTTTTAATTCGCAG...............	21	1	2.00	0.00	0.00	0.00	1.00	1.00
.......................................................TCTGGAATCTTTAATTCGCAGG..............	22	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................TCTGGCATCTTTAATTCGCAG...............	21	1	2.00	0.00	1.00	0.00	1.00	0.00
.......................................................TATGGAATCTGTAATTCGCAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTGATCGATTTCGAGGTTT....................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTCACTTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTGATTCGCAGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATCCGCAG...............	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTGGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTGAATTCGAAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGGATCTTTAATTCGCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................CTGGACTCTTTAATTCGCGGT..............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................CTGGAATCTTTAATTCGCA................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCGGGGATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTGAATTCGCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TATGGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGTAG...............	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................TCTGGCATCTTGAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGTAGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTGAGTTGATCGATTTCGAGGT......................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCTCAGTT.............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................GCTGGAATCTTTAATGCGCAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAACCTTTAATTCGCAGT..............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTCTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCTCGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTCATTCGCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTGATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TTTGGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCGGGAATCTTTAATTCGCAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGACTCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGCC................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTCATTCGCAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTCATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGCT................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTGATCGATTTCGAGGC......................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TATGGAATCTGTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGCATGT.............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCG................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTCAATTCGCAT...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TGTGGGATCTTTAATTCGCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTGACCGATTTCGAGAT......................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................CTGGAATCTTTAATTCGCAGT..............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCTC.................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAAGCTTTAAGTCGCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATATTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCGGGAATCTTGAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCGGGCATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGCATCTTTAATTCGCCG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TATTGAATCTTTAATTCGCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTGAGTTCATCCATTTCGAGGTT.....................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGCATCTTTATTTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGAAATCTTTAATTCTCAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTCAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAGTC.............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................ACTGGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGGATCTTTAATTCGCTGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATACGCAG...............	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAACTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTGTAATTCGCT................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TTTGTAATCTTTAATTCGCAGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTAGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCTCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGCAGTG.............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTGTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCGACG...............	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATGCGTAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATATTTAATTCGCAGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGCCTTT.............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCTGGAATCTTTAATTCTCAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................TCGGGAATCTGTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00	0.00

chr3L:11663476-11663564 +

56.25

CCACCATTCTGACCTGTGAGT-TGATCGATTTCGAGGTTTTGGCAC-ACGAATATAA----TCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CC---ATTCTGAGCTGTAAGTGTTTTCTTTTTCTATTT---TGTACTGTGTGTATAATTGATCCTGAAA--TTATCCTGCAGATCCCGCTGAGGTGA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............GTGAAAGTGTTTTCTTTT..................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

chr2L:12632205-12632296 -

52.4

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTC-------------------GCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTAAGCTTACTTTTGTCGAT-----TGCGTAGAACTAT-------------TAACTTATGTAAATTAAACATTTGACCAGTCCCCATGGACATCT

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2L:2733741-2733825 +

51.73

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGG-----TTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CGGGCATTTTGCGATGTAAGT----CGGGTTAGGAATGGCTATATGGCATACT-ATATACTAAGGCGTATT------ACAGATCCCGCCGAAATAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................TAAGT----CGGATTGGGAATG..........................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

chr2L:106777-106868 -

47.34

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCAC-ACGAAT--ATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGCTTTTATATTGTAAGTACAATAT-T-TAATCCTCTAGCAGTAGTAATGGTTAATGATAAATACCTTCATTAAAGTTCCCACGGAAATCA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2L:1718937-1719021 +

46.07

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAAT----ATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CAGTGGTCTTGACGTGTAAGTAGCTGCAATCGCTGGCCTCACCTCCCAAATGCATTTGTCCAAGTGTCCAAAAGTCCAAGTTCTC----------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2L:112778-112868 -

44.91

CCACCATTCTGACCTGTGAGTTGATCGATTTCG------AGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATCCTATCATGTAAGGAAACCAGCTTGATTTTCATCCCTCTGTGGTTAATATATTATTCTGTTTCTTT------TAGTCCCGCTTGAGATGC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2L:3280225-3280310 -

40.99

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT GAATACTGGTGAAGTGTAAGTATGGGAAATAA-----CTGACTAGAGTAAGGTAGTTATCATTCTTTCGCCCGCAGTTCCGCTGGAATTCC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........GTGAAGTGAAAGxATGGGAA...............................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
........GTGAAGTGAAAGxATGGGA................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00

chrX:5660627-5660736 +

34.78

CCACCATTCTGACCTGTGAGTTGAT------C------GATT--------T----CGAGGTTTTGGCACACGAATATAATCTGGAATCTTT-AATTCGCAGTTC-CCACCGAAATGT CCACGATTA----ATGTAAGTCTTTTTTAATACATTTGTATTTAAATGATTGGAACTTAACTTTGGCTAAC---CCTCTTCTGAATTATTCTTTTTAGGTGTTCACCTCAGAGCTGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...........................TATTTCATTTGTATTTAA........................................................................	18	6	0.17	0.00	0.00	0.00	0.00	0.17

chr2L:1719944-1719969 +

20.22

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
-----------------------------------------------------------------TTTATCCGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr2L:3276035-3276064 -

7.78

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCTGCTGTGCATGCAG---GACTCGG----------------------------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4929:4420541-4420630 +

91.28

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CCACCATTCTGACCTGTGAGTTCATCGATTTCGAGGTT-TGCCAGCCAAAAATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................TCTGGAATCTTTAATTCGCAG...............	21	1	132.00	4.00	19.00	0.00	109.00
...............GTGAGTTCATCGATTTCGAGGTT-....................................................	23	1	14.00	6.00	0.00	0.00	8.00
.......................................................TCTGGAATCTTTAATTCGCAGT..............	22	1	13.00	0.00	3.00	0.00	10.00
.......................................................TCTGGAATCTTTAATTCGCAGA..............	22	1	10.00	0.00	2.00	0.00	8.00
.......................................................TCTGGAATCTTTAATTCGCA................	20	1	7.00	0.00	4.00	0.00	3.00
.......................................................TCTGGAATCTTTAATTCGCAGTT.............	23	1	2.00	0.00	0.00	0.00	2.00
.......................................................TCTGGAATCTTTAATTCGC.................	19	1	2.00	0.00	0.00	0.00	2.00
.......................................................TCTGGCATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCCGGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAGTTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
...............GTGAGTTAATCGATTTCGAGGTT-....................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCGCAT...............	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................TATGGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATATTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
...............GTGAGTTCATCGATTTCGA.........................................................	19	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGCAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCTCAG...............	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................TCTGGAATCTTTAATTCGAAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCTTTAATTCACAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTGGAATCCTTAATTCGCAGT..............	22	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCTTGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TCCTGAATCTTTAATTCGCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
.......................................................TTTGGGATCTTTAATTCGCAG...............	21	1	1.00	1.00	0.00	0.00	0.00
.......................................................TCTGGAATCTTTAAxTCGC.................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:10561783-10561874 -

54.99

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAG-GTTTTGGCACACGAAT----ATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTAAGCTTACTTTTGTCGATTGCGTAGGCATACTAACCCATGTAAATT-GAACATTTGAC---CAGTCCCCATGGACATCT

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4784:11619362-11619451 +

53.19

CCACCATTCTGACCTGTGAGTTG-ATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATT--CGCAGTTCCCACCGAAATGT CA---ATTTTGAGCTGTAAGTGCTTTCCGCTTCTA--TTTTGTACTGTGTGTGTAGTTAATCCTAATTAATTGCTGCAGATCCCGCTGAGGTGA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.A---TTTTTGAGCTGAAAGTG........................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................A--TTTTTTTCTGTGTGTGT........................................	18	2	0.50	0.00	0.00	0.00	0.50
.......................................TTGTTATGTGTGTGTAGT.....................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:2791140-2791228 +

47.52

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTA----------ATTCGCAGTTCCCACCGAAATGT CGGGCATTTTGAGATGTAAGTCG------------GTTTGAGTGTGCTACCATAGGCTCGCTTTATCCATATGATGCGTGTTGCAGATCCCGCCGAAATAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................................................................ATGTTGCGTGTTxCAGATC............	18	1	3.00	0.00	0.00	0.00	3.00
......................................................................AGGATGCGTGTTxCAGATC............	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:153387-153477 -

47.39

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGT------TTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT TTACGATCCTATCATGTAAGTAAACCTGCTTGATATTCATCCCTCTGTGGTTAATATATTATTTTGTTTGTTT------TAGTCCCGCTTGAGATGC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................AGTTTGTTTGTTC------TAGTCC............	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_4690:118894-118987 -

46.41

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAG------------GTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGT--T-CCCACCGAAATGT
CCACGATTA----ATGTGAGTCTCT----TTGAATACATTTGACCTAACTTTGGCT-AAGC---TTCTTCTGAATCATTCCATCAAGGTGTTCACCTCAGAGCTGC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4929:3327102-3327188 -

44.72

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACG----------AATATAATCTGGAATCTT---TAATTCGCAGTTCCCACCGAAATGT GAATACTGGTAAAGTGTAAGTA-----------------TGGCAAATGAGTGACTAGAAAAGTACTCATCATTCTTCTATTGCCCGCAGTTCCGCTGGAGTTCC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................................................CGCAGTCCCGCTGGAGTC..	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4929:1791985-1792048 +

31.27

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATA---ATCTGGAATCTTTAATTCGCAGTTC-CCACCGAAATGT
CTGTGGTCTTGACGTGTAAG------------------------------TATAAGTATCTGAAATCGCTGAT-CGCACCCCGCCTCCCAAATGC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4929:1792849-1792874 +

20.22

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
-----------------------------------------------------------------TTTATCCGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4929:3323011-3323040 -

7.78

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCTGCTGTGCATGCAG---GACTCGG----------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droFic1 - 9 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000453904:1262363-1262454 -

82.02

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTT-----TTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATCCTGACCTGTGGGTTGATCGATTTCGAGGTTGCGGGTTGGCGC----TTCTAATCTGGAATCTTTAATTCGCAGTTCCCACTGAGATGT

Size

Hit Count

Total Norm

scf7180000453924:666545-666635 +

52.02

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTT--------AATT------CGCAGTTCCCACCGAAATGT
CGGGCATTTTGAGATGTAAGTAAATAAAGGAATGAATTT--------------ATATAAAGATTGTTATATGATGAGTTACTCCCTATAGATCCCGCCGAAATAG

Size

Hit Count

Total Norm

scf7180000454113:3073416-3073503 -

51.99

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATC-------TTTAATTCGCAGTTCCCACCGAAATGT
TGCCCATTCTGAGCTGTAAGTTATTCAAATCC----------CACTCCAAAGTATCTTACTTATTTCATATTTTATGCTGAAGATCCCGCTGAGGTGA

Size

Hit Count

Total Norm

scf7180000453838:142620-142709 -

48.46

CCACCATTCTGACCTGTGAGTT------GATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAAT---TC-------------GCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTAAGTCAAGATTGGTTTATTT---------GG--------------CTGGAGCTTTTATTTATTCATATTACTTTTAAACAGTCCCCATGGATATCT

Size

Hit Count

Total Norm

scf7180000453904:1422876-1422973 -

45.86

CCACCATTCTGACCTGTGA--GTTGATCGATT-------TCGAGGTTTTGGCACACGAATAT-AATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATCCTTTCATGTGAGAGATGGCCGACTGCCTATTGTACGCTTTTGGTTAACAACTTTTTGTCTTGCTTGC---TTTTTTAGTCCCGCTTGAGATGC

Size

Hit Count

Total Norm

scf7180000454072:548538-548620 +

41.34

CCACCATTCTGACCTGTGAGTTG-ATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAG--TTC-CCACCGAAATGT
GCATTACT--GAATT--GAATTGAATTGAATTGAATGGC--------TGTGTACGGCATTTGATCCCTCGCTCCAGGTGTTCACCTCGGAGCTGC

Size

Hit Count

Total Norm

scf7180000453924:1271644-1271743 -

38.77

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTT-TTGGC---ACACGAATATAATCTGGAATCTTTAAT------------------------TCGCAGTTCCCACCGAAATGT
ACTG-------------------TGCGTTCTCGGGGATATTGGTAAAGTGTAAGTATTGTCTGAGTTACAAAATTTGAGATACATTAACAGTAAAATCTTACAGTTCCCCTGGAGTTTC

Size

Hit Count

Total Norm

scf7180000453949:411484-411561 -

38.52

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGCTG----------CTTGGCCACTCGAACC--CCCAAGATAATTCACCCCAGAGCTTTTTTCCAAGTG-

Size

Hit Count

Total Norm

scf7180000453924:1267596-1267625 -

8.15

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCCATCCTGCTGTGCATGCAG------------GACTCGG-------------------------------------------------

Size

Hit Count

Total Norm

droEug1 - 9 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409554:1722173-1722263 -

89.2

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATCCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCTCTTAGAAACAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT

Size

Hit Count

Total Norm

scf7180000409554:4971162-4971251 +

56.07

CCACCATTCTGACCTGTGAGTTGAT--CGATTTCGAGGTTTTGGCACACGAATATAATCTG-------GAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTAAGTTTACATTAATT-------TATTGAATGGAAATGTTAACTAATTCAAATTACCTTTAAT---CAGTCCCCATGGATATTT

Size

Hit Count

Total Norm

scf7180000409711:3507825-3507912 +

54.81

CCACCATTCTGACCTGTGAGTTGA-TCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGCCCATTCTGAGCTGTAAGTATATTCAGTTTCTGTCTCTAAGCATCCTTATAA-ATCTTGA---TTTGTCCTAAAGATCCTGCTGAGGTAA

Size

Hit Count

Total Norm

scf7180000409554:3373536-3373626 -

49.88

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCT------------TTA------ATTCGCAGTTCCCACCGAAATGT
CGGGCATTTTGAGATGTGAGTAGAGATG------------------TGACTATGTTTCTGAAGTTCTTTCTATATGATTAGTTACTTTCTACAGATCCCGCTGAAATAG

Size

Hit Count

Total Norm

scf7180000409154:114683-114774 -

49.87

CCACCATTCTGACCTGTGAGTT---------GATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACAATTCTGTCATGTAAGAAATATCAGAGGGTTGAATACCGTTTTTCGATATATA------ATATAT--ATATTTATTTTCAGTCCCGCTTGAGATGC

Size

Hit Count

Total Norm

scf7180000407252:27275-27370 -

48.65

CCAC--CATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACAC-------------GAATATAATCTGGAATC--------------------TTTAATTCGCAGTTCCCACCGAAATGT
CCTCACCTTCGTG-----------------------------CGCACACTTCACAGCGTATCGAATT-GATTGGGAATCGCGTTAAATTTATCAATTAATTTTATTCGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

scf7180000409554:2804183-2804267 +

46.18

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
GAATTCTAGTGAAATGTAAGTGTGACGAAAATGTTTT------TCAAAAATATGTATTTTATTTATTTCTTTACAGTTCCTCTGGAGTTTC

Size

Hit Count

Total Norm

scf7180000409061:220028-220059 -

21.35

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTC-CCACCGAAATGT
AA------------------------------------------------------------TATCTGTTTAGGTGTTCACCTCAGAGCTGC

Size

Hit Count

Total Norm

scf7180000407252:28385-28409 -

15.73

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGCT------------------------------------------------------------------

Size

Hit Count

Total Norm

droBia1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302261:2802460-2802551 +

86.22

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTT-TTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATCCTGACCTGTGAGTTGATCGATTTCGGGGTTTTTGGCTGCCTTCAATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT

Size

Hit Count

Total Norm

scf7180000302188:1737987-1738072 +

52.71

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAAT---CTTTAA----------TTCGCAGTTCCCACCGAAATGT
CGGGCATTTTGAGATGTAAGTTAA------------------GATGGGAAAATATTTCAAAATTGACTATAAAGAGATGCTTCTTACAGATCCCGCCGAAATAG

Size

Hit Count

Total Norm

scf7180000301547:157615-157703 +

52.69

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAAT--ATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CAGTGCTCCTATACTGTAAGTGCCTAAATCT----GTCCTCGAACATGTATGTCTATTTAACAACACGTTCTTTGCAGTTCCCACGGAAATAA

Size

Hit Count

Total Norm

scf7180000302334:71233-71316 +

48.2

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTG---GAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCA---TCCTGAGCTGTAAGTGCGTTGCTGTTCTTCCTTGGG-------TTATCCTCTCAACCACTTGTTAACCTGCAGATCCCGCTGAGGTGA

Size

Hit Count

Total Norm

scf7180000301468:1196392-1196475 +

47.68

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATT------CGCAGTTCCCACCGAAATGT
CCTCAATTC----ATGTGGGTTTCTCGAGTT---------GATATCAAGAGGGGATCTGTTATTTATAACTCCTTTTTTCAGTCCCCGCGGAGCGGG

Size

Hit Count

Total Norm

scf7180000301547:151359-151449 +

47.42

CCACCATTCTGACCTGTGAGTTGATCGATTTCG--------AGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATCTTATCATGTAAATGAAACTATATTGCTTACTACAGCCTTTCGGTAACTAATA--------ATTGTATCGTCCGCAGTCCCGCTAGAAATGC

Size

Hit Count

Total Norm

scf7180000301468:42001-42093 -

44.72

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTA--------------ATTC-------------GCAGTTCCCACCGAAATGT
TGACCGTTTTGACTTGTGAGTG------------------TGCATAGGATTGTAAAG-------TTTACTTTAGATTAACTCATTCGAATTACCTCTAAACAGTCCCCATGGACATCT

Size

Hit Count

Total Norm

scf7180000301468:1244390-1244474 +

42.22

CCACCATTCTGACCTGTGAGT----TGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
GAATACTGGTTAAGTGTAGGTACCGTCATCCACTTAGCATATTTGTTAT--TAATATCTTACGC--------CTTTTTAGTTCCCCTGGAGTTCC

Size

Hit Count

Total Norm

scf7180000302188:58380-58423 -

25.2

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGC-------TGCCGCCTGGGTACTCGAAT----------------------------------------

Size

Hit Count

Total Norm

scf7180000302188:57342-57368 -

21.35

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
----------------------------------------------------------------TTTTATTTGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

scf7180000302126:2638365-2638376 +

7.87

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCT-------------------------------------------------------------------------------CGGAGCTGC

Size

Hit Count

Total Norm

None

scf7180000301468:1249464-1249493 +

7.78

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCT--CCTGTGCAT-GCAGGATTCGG----------------------------------------------------------

Size

Hit Count

Total Norm

droTak1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000414050:34777-34868 -

78.86

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTT----TTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATTCTGACCTGTGAGTTGTGAGATTTCATGGTTCCTTTCGG---TCATTTTTAATCTGGAATCTTTAATTCGCAGTCCCCACCGAAATGT

Size

Hit Count

Total Norm

scf7180000415705:483251-483341 +

57.84

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CGGGCATTTTGAGATGTGAGTAAAGATATTATTGGGCTTTTAAATGGCTTTATATATGAAAAATTTATTTTTACAGATCCCGCTGAAATAG

Size

Hit Count

Total Norm

scf7180000414445:574800-574885 -

57.51

CCACCATTCTGACCTGTGAGTTGATCGA-TTTCGAGGTTTTGGCACACGAATA--TAATCT--GGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CC---ATTCTGAGCTGTAAGTATAATGAGTTAC--TTTTTTGGAA------TATCTAGTCATAGTATTTTCTATCCTGCAGATCCCGCTGAGGTGA

Size

Hit Count

Total Norm

scf7180000413017:437811-437899 +

54.35

CCACCATTCTGACCTGTGAGT-TGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATCCTATCATGTAAGTGCGACCAGATTGTTGACTTTTTTATCGGTTAATAATAT---ATTTATCTTTCGCAGTCCCGCTGGAAATGC

Size

Hit Count

Total Norm

scf7180000415667:572087-572171 +

52.37

CCACCATTCTGACCTGTGAGTT------GATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTAAGTTTATAAGGTTGGTTATGAAGATTTCATCATT------------GGAATTACTTTTAAACAGTCCCCATGGATATAT

Size

Hit Count

Total Norm

scf7180000415779:167590-167686 +

48.15

CCA--CCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACA-------------CGAATATAATCTGGAATCT---------------------TTAATTCGCAGTTCCCACCGAAATGT
CCTCACCTTCGTG-----------------------------CGCACACTTCACAGCGTATCGAATTTAATC-GGAATCTGAATCGCGTTTATCAATTAATTTTATTCGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

scf7180000413924:64585-64670 +

44.75

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGT----TTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
GGATATTGGTGAAGTGTGAGTAGATAATGTAATAGTGATTATATTTATTACTTATATGATATG---------ATATTTAGTTCCCCTGGAGTTCC

Size

Hit Count

Total Norm

scf7180000415779:166544-166568 +

15.73

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGCT------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000415769:1080201-1080212 -

10.11

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCT-------------------------------------------------------------------------------CCGAACTGC

Size

Hit Count

Total Norm

None

scf7180000413924:68954-68983 +

7.78

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCTGCTGTGCATGCAG---GACTCGG----------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000413042:11448-11477 +

6.96

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATCCTAT-------------------------------------------------------------CATTCCCGCTGGAAATGC

Size

Hit Count

Total Norm

None

droEle1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000490458:268801-268894 +

78.56

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTT---TTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTACCATTCTGACCTGTGAGTTTATGGATTTCCAAGTTTTTTTGACATTTTACAATAATCTGGAATCTTTAATTCGCAGTTCCCACTGAAATGT

Size

Hit Count

Total Norm

scf7180000491186:2993327-2993418 -

54.54

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCA-CACGAATATAATCTGGAATCTTTAATTC---GCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTGAGTTAATTGTTT-CGTTAATTGGATAGCAGGAGT--AACTTAATCGATTTACCTCTAAACAGTCCCCATGGACATCT

Size

Hit Count

Total Norm

scf7180000490216:34374-34461 -

48.92

CCACCATTCTGACCTGTGAGTTGATCGA-TTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTC---GCAGTTCCCACCGAAATGT
CAGTGCTCCTATACTGTGAGTGCCTTTTCTTTCG-------AACAGATGAGTTTATTATTATACATGTTGTCCAACATAGTTCCAACGGAAATCA

Size

Hit Count

Total Norm

scf7180000491273:1617090-1617180 -

47.32

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATA-------ATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCATGACATGTAAGT--AGCTGCTTGGATACTTCTACCTACTTATATATATATATATATTATATCTCTAAGATACTTCTCCTCCCAA-----

Size

Hit Count

Total Norm

scf7180000490993:2169376-2169472 -

46.79

CCACCATTCTGACCTGTGAGTT-------GATCGATTTCGAGGTTTTGG-CACACGAATATAATCTGG--AATCTTTAATTCGCAGTTCCCACCGAAATGT
CC---ATTTTGAGCTGTAAGTATATGTTAAGTTACCTCTGCGGTAATAAATATA-AAATATAACTTAACTACTTTTTAACCTGCAGATCCCGCTGAGGTGA

Size

Hit Count

Total Norm

scf7180000490216:40545-40634 -

44.86

CCACCATTCTGACCTGTGAGTTGATCGATTTCG----------------------------AGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATCCTGTCATGTAAGACAAACTA----GAAGTAAATTATATATCTACCTTCAAATAATATTTTCGTACA-------------------------CTTAGTCCCGCTCGAGATGC

Size

Hit Count

Total Norm

scf7180000491046:1989278-1989366 -

39.55

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TAAAGTGTGAGTATGAAAATCTAGTGAAATTCATAGTATTAAATACTAAATA---TTTAAATTTAATAACCTACAGTTCCATTGGAGTTCC

Size

Hit Count

Total Norm

scf7180000491273:1616140-1616166 -

21.35

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
----------------------------------------------------------------TTTTATTTGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

scf7180000490141:272852-272863 +

7.87

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCT-------------------------------------------------------------------------------CAGAGCTGC

Size

Hit Count

Total Norm

None

scf7180000491046:1985105-1985134 -

6.3

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTTCGATTCTACTATGCATGCAG------------GATTCGG-------------------------------------------------

Size

Hit Count

Total Norm

droRho1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000778291:9908-9998 -

85.98

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATCCTCACCTGTGAGTTGATCGATTTCGAGGTTGTGGCATCTAACATTAATCTGGAATCTTTAATTCGCAGTTCCCACTGAAATGT

Size

Hit Count

Total Norm

scf7180000766156:88437-88527 -

55.45

CCACCATTCTGACCTGTGAGTTGA------------TCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CGGCCATTTTGAGATGTAAGTTAGGATAATGACTACACTATTTCATGGCTTACTCAT-------TAATGGG-----TTATGTCTGCAGATCCCTCGGAAATCG

Size

Hit Count

Total Norm

scf7180000779252:131668-131755 -

54.22

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATCCTGTCGTGTAAGAGAAACTAGATTATTAATTATAGTTCTTTAAATAATTTGGT---TATCCTGCTTAGTTCCGCTCGAGATGC

Size

Hit Count

Total Norm

scf7180000779234:253287-253376 +

53.56

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGA--------------------ATCTTTAATTCGCAGTTCCCACCGAAATGT
TGACTGTTCTGACTTGTAAGCTAG------------------CATTAGTTTATTGGGTGGAAAGACTAACTAATTAGATTTACCTTTAA---ACAGTCCCTATGGACATCT

Size

Hit Count

Total Norm

scf7180000779252:125191-125272 -

48.6

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CGGTGCTCTTATACTGTGAGTGTCTGTCTTTCGAA-----CGTAAATGAATATTACTAA----ACCTATTTTTCAGTTCCCACAGAAATCA

Size

Hit Count

Total Norm

scf7180000779952:24171-24259 -

47.37

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGT-----TTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCA---TTTTAAGTTGTAAGTAGAA----GTTGAAGTCCTTTCTTGGTGTATTCTCTTTACCCATATTTGTTGTACTTCAGATCCTGCCGAGGTGA

Size

Hit Count

Total Norm

scf7180000777227:128839-128926 -

46.28

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
GGATACTGGTAAAGTGTGAGTATACAAACTATTT---TATATTATAAAATAATTATCTCCATTTCATCCACTTTAGTTCCTCTGGAGTTTC

Size

Hit Count

Total Norm

scf7180000777227:124634-124665 -

8.69

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCCATTCTGCTCTGC-----------------------------------------------------ATGCAGGACTCAGCG------

Size

Hit Count

Total Norm

None

scf7180000776863:16146-16175 +

8.06

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCAC-CGAAATGT
TTACGATTCTGTC--------------------------------------------------------------GTTCCCGCTCGAGATGC

Size

Hit Count

Total Norm

None

scf7180000779467:304955-304966 +

7.87

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCT-------------------------------------------------------------------------------CGGAGCTGC

Size

Hit Count

Total Norm

None

droKik1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302570:979763-979851 -

59.78

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTT-TGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CAGTGTTGCTGTACTGTGAGTTGAAAATCCTTGAGGATCTTGATACCTTAATCT-AGCAGAATTCTC--TTTCTTAGTTCCCTCGGAAATCA

Size

Hit Count

Total Norm

scf7180000302570:1193664-1193760 +

56.75

CCACCATTCTGACCTGTGAGTTGA--TCGATTTCGAGGTTTTGGCACACGAATATAAT----CTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACTATTTTAACTTGTAAGTTGTCTTGGATTTTGGGTTTTCTATAATGGAATTCACTTTTTATTTAATTTTTGGTTATTAGTTCCCACAGAGATGT

Size

Hit Count

Total Norm

scf7180000302473:47559-47646 -

55.29

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGGCATTTTGAAATGTATGCAAATAGGTTTTTATATTCTTATAGATCAGTA---TTTATGGTTTAATGATTGCAGATCCTGCCGAGATAG

Size

Hit Count

Total Norm

scf7180000302570:986594-986682 -

54.17

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATA-----TAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TCACTATTCTGTCATGTAAGGAGTTCTATTTAACAG-------AAAGAAATATATGTTAATTAATACTTTATAATTTCTAGTCCCCCTGGAGATGC

Size

Hit Count

Total Norm

scf7180000302677:183384-183477 +

47.34

CCACCATTCTGACCTGTGAGT-----------TGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTC--GCAGTTCCCACCGAAATGT
TGACTGTCCTGACTTGTACGTTACCCTGTACTTGAATGGTTTTAAGG-----GTA-----TTTTTATCTGTTTTTATTATCTCTACCAGTCCCCATTGAGATGT

Size

Hit Count

Total Norm

scf7180000302391:1203329-1203417 -

47.25

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTG----------------------GAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGCCTATTTTGAGCTGTGAGT------------------------ATTAGTAAAATCTCTTTAGCGAAGCATTTCCTTTATCAAATATTTTTTAATAGATCCCGCTGAGGTCA

Size

Hit Count

Total Norm

scf7180000302679:1552532-1552627 +

46.83

CCACCATTCTGACCTGTGAGTTGATCGATTTCGA------GGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
GGATTCTAGTAAAGTGTGAGTTGCTCTACCTTAATTTCCAATATTTATTT-TAAAACATTAATTATTAATATTTTCTTACAGTTCCCTTGGAGTTCC

Size

Hit Count

Total Norm

scf7180000302382:556024-556111 +

45.14

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTT-GGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGCT--GCTTGGGTATCTCAAAGATACGAGTACGAGTTAGAGTACG-AGTACAAGTACTTCACCCCC-CCA

Size

Hit Count

Total Norm

scf7180000302382:557312-557338 +

21.35

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
----------------------------------------------------------------TTTTATTTGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

scf7180000302679:1557765-1557796 +

7.51

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCTGCTCTGCATGCA------------GGACTCGGCT-----------------------------------------------

Size

Hit Count

Total Norm

droAna3 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12916:1534568-1534658 +

61.26

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATCCTGACCTGTAAGTACATTGTGGATATTGTTTATACTACAGCCTCTAATCTTATACTATATTTTTGCAGTTCCAACCGAAATGT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13337:5905784-5905867 +

50.67

CCACCATTCTGACCTGTGAGTTG---ATCGATTTCGA-GGTTTTGGCACACGAATATAATCTGGAATCT-TTAATTCGCAGTTCCCACCGAAATGT CT---ATTCTGAGCTGTAAGTCTTCTAAAGATTTTAAGGGTTAAGGTTC-------TAA--TGGTTTCACTTTCTATGTAGATCCCGCTGAGGTTA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............GTAAGTCTTGTAAAGAGT...............................................................	18	1	1.00	1.00	0.00	0.00	0.00
..................................TAAGGGTGAGGGTTC-------TA......................................	17	1	1.00	0.00	0.00	1.00	0.00

scaffold_12916:1985570-1985661 +

47.9

CCACCATTCTGACCTGTGAGT------------TGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TAACGATTCTATCATGTAAGTGGCGTCTGCTTCTGATTGATTCTCA----TTGCCTGATGACCCCATT-------CTTTCCACTCCAGTCCCGCTCGAGATGC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12916:13781299-13781395 -

46.34

CCACCATTCTGACCTGTGAGTT---------------------------------GATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TAACGGTTTTGACTTGTAAGAACCAAAACTACTTTCTGTATCAAAGCCAGAAACTAATCGTAATTGAA---------------------------ATTATCTTAACCAGTCCCCATTGAGCTGT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12984:203161-203255 +

45.91

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAA---------TCTTTAATTCGCAGTTCCCACCGAAATGT CTGGAATTTTGCGGTGTAAATA--TAAATAACGCATTTATTACATTTC---ATACTCTGAAACATCGTCCGTCTTACTTTTATAGATCCTTCCGAAATCG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................ATA--TAGATAACTCATTTA.............................................................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................ATACTCTGCGACATCGTC...............................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_12916:13440564-13440651 +

45.64

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT GGATCCTCGTCAAGTGTAAGACCAGCTTTTATGAGTAATAAATA-TCAAATTTGATTT--ATTTCTTATCCTATAGTTCCCTTGGAGTTCC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............TAAAAGxCCAGCTTTTATGAG........................................................	20	1	1.00	0.00	0.00	0.00	1.00
.......................AGCTTTTATGAGTAATAACA................................................	20	1	1.00	0.00	1.00	0.00	0.00

scaffold_13248:367631-367729 +

39.86

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGA--------------ATATAATCTGGAATCTTTAATTCGCAG---TTCCCACCGAAATGT CCACGATTA----ATGTGAGTCTCAGAATC--A--AACCTGGCCAAAAAAAGAGAAGAAACTAA-TTAGTTTTAAATATTTTCATAAAGGTCTTCACCTCAGAACTGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................................GAGAAGAGACTAA-TTAGGT.....................................	19	1	1.00	1.00	0.00	0.00	0.00
............................................AAAAAAAGAGAGGAAACGA.............................................	19	1	1.00	0.00	0.00	0.00	1.00
.............................................AAAAAAGAGATAAAACTA.............................................	18	2	0.50	0.00	0.00	0.00	0.50
............................................AAAAAAAGAGGAGAAAATA.............................................	19	3	0.33	0.33	0.00	0.00	0.00
...........................................AAAAAAAGGAGAAGAAACTA.............................................	20	1	1.00	0.00	0.00	0.00	1.00
......................................ATGGGCAAAAAAAGAGA.....................................................	17	1	1.00	0.00	0.00	1.00	0.00
.........................................GCCAGGAAAAGAGAAGAA.................................................	18	1	1.00	1.00	0.00	0.00	0.00
.............................................AAAAAGGAGAAGAAACGA.............................................	18	2	0.50	0.00	0.00	0.00	0.50
..........................................ACAAAAAAAAAGAAGAAA................................................	18	9	0.11	0.00	0.00	0.11	0.00
............................................AAAAAAAGAGAAxAAACTCA-...........................................	19	2	0.50	0.00	0.00	0.00	0.50
.............................................AAAAAAGAGAAGAAAAAAA-...........................................	19	10	0.10	0.00	0.10	0.00	0.00
............................................AAAAAAAGAGGAAAAA................................................	16	32	0.03	0.00	0.00	0.03	0.00
.........................................GTCAAAAAAAGxGAAGAAA................................................	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_12916:15837200-15837226 -

21.35

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
----------------------------------------------------------------TTTTATTTGCAGTTCCGCTGGAAATTG

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12916:15838230-15838250 -

13.48

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCATGACATGTAAGT----------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_12916:13444820-13444851 +

8.69

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCCATTCTACTCTGTA------------TCCAGGACTCGGCG-----------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

droBip1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396728:196247-196338 +

65.86

CCACCATTCTGACCTGTGAGTTGATCGATTTCGA-GGTTTTGGCACAC-GAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTACCATCCTTACTTGTGAGTACATCTGTTGATATAATTTTTTTATACTGCCTCTAATTT-GATCTTATATATTGCAGTTCCCACTGAAATGT

Size

Hit Count

Total Norm

scf7180000396728:639360-639449 +

53.09

CCACCATTCTGACCTGTGAGT--TGATCGATTTCGA--GGTTTTGGCACACGAATATAAT---CTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TAACGATTCTCTCATGTAAGCGGTGTTAGATTCCGACTGGTTCTTCCGTATAA---TAACTCTTT-G--TATCCATTT--CAGTCCCGCTCGAGATGC

Size

Hit Count

Total Norm

scf7180000392940:41597-41685 -

52.04

CCACCATTC---TGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAG----TTCCCACCGAAATGT
CCACCATTAATGTAAGATATAAG--AATCTATA---CTAATTTAAAAAAAAAAACTAATTAGT----TTTATTTTGTAGGTTTTCACCTCGGAACTTC

Size

Hit Count

Total Norm

scf7180000396574:341237-341327 +

49.94

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTT---TGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGGAATTTTGCGGTGTAAATATAATGAATGCATTTTTTACATTGCATACTCCTAAACTTAG---TCTGTCTTTTATAGATCCTTCCGAAATCG

Size

Hit Count

Total Norm

scf7180000396371:1241669-1241752 +

47.19

CCACCATTCTGACCTGTGAGT---TGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CT---ATTCTGAGCTGTAAGTCCTCTAAAGACTAAAAGGATTATGTTTCTAAAAGTA-------TTACTTTCTACTTAGATCCCGCTGAGGTTA

Size

Hit Count

Total Norm

scf7180000396535:745259-745355 -

44.98

CCACCATTCTGACCTGTGAGTT----GATCGATTTCGAGGTTTTGGC----ACACGAATATAATCTGGAATCTTTAATTC-GCAGTTCCCACCGAAATGT
TGACGGTTTTGACTTGTAAGAATAGAAATTACCTTCTATATCTAAGTCAGTAACTAAAAGTAGTTTACATTTTCT---TGACTAGTCCCCATTGAGCTGT

Size

Hit Count

Total Norm

scf7180000396580:11609-11698 -

40.32

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTC------------GCAGTTCCCACCGAAATGT
GGATCCTCGTAAAGTGTAAGACAAGC-------------TGATTCATGAGTAACATCTATGATATTTGATTGAATTCCTTTTCTATAGTTCCATTGGAATTTC

Size

Hit Count

Total Norm

scf7180000396717:73629-73661 -

25.08

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TT---------------------------------------------------------GAATTTTT-ATTTACAGTTCCGCTGGAAATCG

Size

Hit Count

Total Norm

scf7180000396717:74667-74687 -

13.48

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCATGACATGTAAGT----------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000396580:5411-5442 -

7.9

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCCATCCTGCTTTGTA------------TCCAGGACTCAGCG-----------------------------------------------

Size

Hit Count

Total Norm

dp4 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrXR_group6:10049476-10049560 -

51.73

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGG--TTTTGGCACACGAATATAATCTGGAA-TCTTTAATTCGCAGTTCCCACCGAAATGT
CC---ATCCTTAGCTGTGAGTCG----CCTCAGAGGGCCCTTGTCGAGCG--TACCCACTGACCTTCCTCCATTCGTAGATCCCGCCGAGGTTA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group4:2074862-2074949 +

47.5

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAG-----------------------GTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CGGGCATATTGAGATGTAAGTAGACTCA-----AAGTACGATCAATATTCGACTAACCGATTCGGCAA---------------AAC------CCTCCAGATCCCTCCGAGATAG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group4:2703087-2703178 -

47.38

CCACCA------TTCTGACCTGTG-AGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TCGTTAAATGTAGGCCACCCCATGCAG----TTGATTGTGTGATGCCTTCGTCTAATTCTAATTCCAAT--TCTAATTTGTAGTTCCCTTGGAGTTCC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXL_group1e:2110856-2110954 -

43.19

CCACCATTCTGACCTGTGAGTTGA--TCG--ATTTCGAGGTTTTGGCACACGA--AT--ATAATCTGGAATCTTTAATTCGCAGTTCCCACCG-AAATGT TCGCCACTATCA-ATGTGAGTTCAAATCCCCCTCTTACGCCTCTTACATATATTTATTTATTTCATGTATTTTCTCCTTAGGTTTTCACATCGGAGCTGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................TTTATTTCAAGTCTTTTCTC........................	20	1	1.00	0.00	1.00	0.00	0.00

chr4_group2:139778-139878 -

42.75

CC--ACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGG-----AAT----CTTTAAT----TCGCAGTTCCCACCGAAATGT CTGTACTGCTTTATTGTATGTCATGTTCGTCTGTTACTCTCTT-----CCTATACAATCTAATTTATATTTATTTTTTTTTTGGCAAACAGTTCCGTCGGAAATAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................TTATACGTATTTTTTTTTT........................	19	1	1.00	0.00	1.00	0.00	0.00
.............................................................ATATTTATTTATTTTTTTTT.........................	20	10	0.10	0.00	0.10	0.00	0.00

chr4_group2:147116-147214 -

40.86

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAA--------------TCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT TAACGATTCTATCATGTAAGTGATTTAACAACACAATATATGTATA------TTATGTACTCATATGTGTATCAAATCCATCGTGTTTAGTCCCACTTGAGATGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................TTTAACxACAGAATATATG...............................................................	18	1	1.00	0.00	1.00	0.00	0.00

chr4_group2:339129-339252 +

36.46

CCACCATTCTGACCTGTGAGTTGATCGA-TTTCGAGGTTTTGGCAC----------------------------------ACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATTTTGACATGTAAGTGTCCATATCCTCGAGGCTCCTGCAATGCACTGCAATGCACTGCAATGACCGCAATGCTGAC--GTATTATTTATGTTCTCCGATCCCCAGTTCCCACTGAAATGT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group3:227899-228012 +

36.3

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTT---------------------------GGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGACAGTTCTGACCTGTAAGTACATA----TTTACGCTTTTCTAAGCGGTGTAGGGTACAAGTTAATCGTTTCCTCCTTTGAACTGCACTACGCCAATAACAGTCCCTATTGAGATGT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group3:8471980-8472042 +

35.96

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAG-----GTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CTGTGGTCTTGACATGTAAGTAGTGGGATTGTGTATCGCCAAGATAGTACATATGTATAGTCT---------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................AGTAGTGGGATAGAGTATC...........................................................	19	1	1.00	0.00	1.00	0.00	0.00

chr4_group3:8473409-8473437 +

22.47

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
T--------------------------------------------------------------TTTTCATTTGCAGTTCCGCTGGAAATAG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr4_group4:2698120-2698149 -

7.04

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCTGCTATGCCAGCAGG---ACTCTG----------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_61:329872-329956 -

50.8

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAAT---CTTTAATTCGCAGTTCCCACCGAAATGT
CC---ATCCTTAGCTGTGAGTCGCCTCAT--AGGGCCCTTGTCG----AGCGTACCCACTGACCTTCCTCCATTCGTAGATCCCGCCGAGGTTA

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_10:1079946-1080033 +

47.5

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAG-----------------------GTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CGGGCATATTGAGATGTAAGTAGACTCA-----AAGTACGATCAATATTCGACTAACCGATTCGGCAA---------------AAC------CCTCCAGATCCCTCCGAGATAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......ATTGAGAxCTAAGTAGACTC.......................................................................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00

super_10:1711428-1711519 -

47.38

CCACCA------TTCTGACCTGTG-AGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TCGTTAAATGTAGGCCACCCCATGCAG----TTGATTGTGTGATGCCTTCGTCTAATTCTAATTCCAAT--TCTAATTTGTAGTTCCCTTGGAGTTCC

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_8:3742095-3742193 +

40.86

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAA--------------TCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TAACGATTCTATCATGTAAGTGATTTAACAACACAATATATGTATA------TTATGTACTCATATGTGTATCAAATCCATCGTGTTTAGTCCCACTTGAGATGC

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_8:3747465-3747563 +

40.86

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_18:977185-977291 -

40.05

CCACCATTCTGACCTGTGAGTTGA----TCGATTTCGAGGTTTTGGCACACGAATATA------------ATCTGGAATCTTTAATTCGCAGTTCCCACCG-AAATGT TCGCCACTATCA-ATGTGAGTTCAAATCCCCCTCTTACGCCTCTTATACATACATATATATTTATTTATTTCATGTATTTTCTCCTTAGGTTTTCACATCGGAGCTGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................CATACATACATATATACTT.............................................	19	13	0.08	0.00	0.08	0.00	0.00	0.00

super_8:3550415-3550538 -

36.46

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_1:1702736-1702849 +

36.3

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_1:9922934-9922995 +

34.83

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAG-----GTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTGGTCTTGACATGTAAGTAGTGGGATTGTGTATCGCCAAGATAGTACATATGTATAGTC----------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_1:9924372-9924400 +

22.47

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
T--------------------------------------------------------------TTTTCATTTGCAGTTCCGCTGGAAATAG

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_10:1706488-1706517 -

7.04

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCGATCCTGCTATGCCAGCAGG---ACTCTG----------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_180772:2076013-2076099 +

60.56

CCACCATTCTGACCTGTGAGT-TGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CAACCATTCTGACATGTAAGTGTGCTCTATGTC-----TTCTCAATAAGCAGTCACTCATTACTTATCCATTTGTAGTTCCAACCGAGATGT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................AGTCACTCATTACTTATCCATTTGT.................	25	1	1.00	0.00	1.00	0.00	0.00

scaffold_180772:1509835-1509929 +

54.24

CCACCATTCTGACCTGTGAGT--TGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTT--TAATTCGCAGTTCCCACCGAAATGT CTGGCATATTGAGATGTAAGTTTTGAATAAATCAGATAAATTGGTAATCGCAACCCAACTAAAATCTTCCTACTTTGCAGTTCCTTCTGAAATAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................CTAAAATCTTCCTACTTTGCAG...............	22	1	1.00	0.00	0.00	1.00	0.00

scaffold_180772:1844874-1844969 -

46.35

CCACCATTCTGACCTGTGAGTTGA-TCGATTTCGAGGTTTTG-GCACACGAATAT-AATCTGG-AATCTT-TAATTCGCAGTTCCCACCGAAATGT
TTACAATTCTATCATGTAAGTTAAAACGATTAAGTAATTTCACACTTACATATATTTATTTAACTTTCTCTTGTCTCCTAGTCCCACTTGAAATGC

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

scaffold_180708:12239414-12239512 -

44.07

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATC------TGGAATCTTTAA---------------TTCGCAGTTCCCACCGAAATGT TGACGGTGCTAACATGTAAGTTAGAAA---------CATTGGCGGA----TCCAATCGATTGGCTGAATATTTATTTGTTTATTTCTCTATATTTAGTCCCAATTGAGATGT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................ATTAATTTGTTTATTACT.........................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................................ATTTATTTATTGCTCTAT.....................	18	3	0.33	0.00	0.33	0.00	0.00

scaffold_181096:2026939-2027023 -

43.93

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGC------------------------AG----TTCCCACCGAAATGT CCACCAT----AAATGTGA------------------------------GTATTATAATGAATCTTGGAATCGATCTAATCCAGTTGGACACACTTTCAGGTCTTCACATCCGAACTGC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............GTGA------------------------------GTxGTATAATGAATC.......................................................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180916:2505264-2505365 +

43.63

CCACCATTCTGACCTGTGAGTTG---ATCGATTTCGAGGTTTTGGCACACGAATATA--------ATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT TGCCCATATTAAGTTGTACGTTATCAGATGGAGAAGAAAAATGGACGTGCAAATATCTATAACACATTTTCATTGTTTATTTTGCAGATCCTGCCGAGGTGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................AGAATACATTTTCATTGT..........................	18	1	1.00	0.00	1.00	0.00	0.00
.........................AGATGAAGAAAAAAAATG...........................................................	18	4	0.25	0.00	0.25	0.00	0.00
...........................ATTGAGAAGAAAAATAGA.........................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................GATGCAGAAGAAATATGGA.........................................................	19	1	1.00	0.00	1.00	0.00	0.00
................................................................TATTTTCATTGTTTATATT...................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_176328:5737-5797 +

41.57

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAA------TCTTTAATTCGCAGTTCCCACCGAAATGT T------------------------------------TTTTACATACTAATAAAAAAATGAACAATTAATTTTAATTTGCAGTTCCGCTGGAAATCG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........................................................GAACAATTAATTTTTTTT....................	18	5	0.20	0.00	0.00	0.00	0.20
..............................................................................................TCT	18	2	0.50	0.00	0.50	0.00	0.00
...................................................AAAAAAAAGAACAATAAA............................	18	36	0.03	0.00	0.03	0.00	0.00
...................................................................AATTTTAGTTTGCAGTTA............	18	3	0.33	0.00	0.33	0.00	0.00
...............................................TAATAAAAAAAGGAAGAAT...............................	19	2	0.50	0.00	0.50	0.00	0.00

scaffold_181132:840640-840700 -

41.57

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAA------TCTTTAATTCGCAGTTCCCACCGAAATGT T------------------------------------TTTTACATACTAATAAAAAAATGAACAATTAATTTTAATTTGCAGTTCCGCTGGAAATCG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........................................................GAACAATTAATTTTTTTT....................	18	5	0.20	0.00	0.00	0.00	0.20
...................................................AAAAAAAAGAACAATAAA............................	18	36	0.03	0.00	0.03	0.00	0.00
...................................................................AATTTTAGTTTGCAGTTA............	18	3	0.33	0.00	0.33	0.00	0.00
...............................................TAATAAAAAAAGGAAGAAT...............................	19	2	0.50	0.00	0.50	0.00	0.00

scaffold_180764:2125128-2125162 -

26.22

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTTACAAT--------------------------------------------------------TTTTACTTGCAGTTCCCTTGGAATTTC

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

scaffold_180772:1829387-1829406 -

17.36

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
---------------------------------------------------------------------TTTGCAGTTCCCTCGGAAAT--

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

scaffold_176328:4428-4448 +

13.48

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTTGTCTTGACATGTAAGT----------------------------------------------------------------------

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

scaffold_181132:842008-842028 -

13.48

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGTTGTCTTGACATGTAAGT----------------------------------------------------------------------

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

droVir3 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13246:412893-412984 +

60.08

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCT-TTAAT---TCGCAGTTCCCACCGAAATGT CCACCATTTTAACATGTAAG-GGCTGAATTTTAAAATTGAATTTAACAAGTATACAACAA--TATTATAATCCCACACAGTTCCCACAGAGATGT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............GTAAG-GGCTGAATTTTAAAAT..........................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_13246:251193-251281 -

53.76

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTA--ATTCGCAGTTCCCACCGAAATGT
TAACGATTTTATCATGTAAGTCTTTGAACTCTTAAGTCATGTAAAAAGTT----AACCACAATATTTAACATTCACAGTCCCTCTTGAAATGC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12963:17579206-17579291 +

53.09

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATC-----TTTA-ATTCGCAGTTCCCACCGAAATGT
T------TCCGAGTTCCGATTTTCTCGAT--CGAAGATTTA---TTTGAAACTTATTCCGACTTCCATTTCTGTTCTTGCAGTTCCCGTGGAGCTGC

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13049:23845878-23845971 +

49.76

CCACCATTCTGACCTGTGAGT---TGATCGATTTCGAGGTTTTGGCACACGAATATAA---------------TCTGGAATCTTTAATTC--GCAGTTCCCACCGAAATGT
CC---ATACTTAGCTGTAAGTGCTAGATAAA---------------ATGCCAATATAGTTCTGTCTCACTCACTCTGGCCATTATCGCTCTGCCAGATCCCGCCGACGTCA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12963:11358100-11358188 +

47.87

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAAT---CTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CGGGAATATTGCGCTGTAAGCTATACGAGACACAAATCTTTTCAATTAAACACAACTGTCCGGATTCGT-----TGTAGATCCATTGGAGATTG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13246:243337-243436 -

46.28

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGT------------TTTGGCACACGAA-TATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CGGTGCTTTTGCAATGTAAGTCAATA----TTGTAATTGTATTGTTTACTATTACATTTTAATAATTGTTTGCACTTTCATAATTCCAGTTCCCACCGAAATTA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................ATTATAATAATAGTTTGCA..............................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_12472:36181-36276 +

38.12

CCACCATTCTGACCTGTGAGTTGATCGATTT----CGA-GGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCAC----------------CGAAATGT CCACCATCA----ATGTGAGTGCAGCAGCTGGCGTCTAA------TCCATTTGACTGCAACTTG------CTCTTTCTCTGCTCCTGCTGCAGGTTTTTACGTCGGAGCTGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................AGTGCAGCAGCGGGCGAC............................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

scaffold_12723:4008018-4008057 +

30.31

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATT----CGCAGTTCCCACCGAAATGT
A------------------------------------------------ATATATT-------GTATAATTCCGTTCTAGTTCCCATTGAAATGA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12963:12834788-12834824 -

23.6

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
------------------------------------------------------ATGTTGAATTTTCTTACTGCAGTTCCGCTGGAGATCG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12963:17586091-17586120 +

7.41

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCCATTCTGCTCTGCCTGCAGG-----------------------------------------------------ACTCGC--------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12963:17578630-17578632 +

2.25

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TCA----------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

droMoj3 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6500:244430-244523 -

56.81

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCA-CACG-AATATAATCTGGAATCTTTAA--TTCGCAGTTCCCACCGAAATGT
TAACCATCTTGTCATGTAAGTCTAT-AATCTCTATGTATTGTCAACACAAAATACAAATCACAATGTTTCATATCAACAGTCCCTCTTGAAATGC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:20107573-20107658 +

50.42

CCACCATTCTGACCTGTGAGTTG-ATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CTGGCATCTTGCGCTGTAAGTGAAATCAAATGTAATGTCT----ATATGTTTATAAT--AATAACTATTGCTTATAGATCCCATGGAAATTG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6680:18469662-18469745 +

49.19

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTA---ATTCGCAGTTCCCACCGAAATGT
CC---ATACTCAGCTGTAAG-TGCTCGAC-AGGATGCTTTAGGCCACTCAT------TGCAACCTTAACGCCTTTTCAGATCCCGCAGAAGTTA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:237807-237898 -

47.32

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATAT-AATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CGGTGCTATTACAATGTAAATCCACATGTTTTTCAACGGTAGCATTCCTTTAATCTTTTGAATTTTTGCAATTACAGTTCCCACTGAAATCA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:14717187-14717296 -

44.0

CCACCATTCTGACCTGTGAGTTGA-------TCGATTTCGAGGTT-------TTGGCACACGAATATAATCT----GGA----ATCTTTAATTCGCAGTTCCCACCGAAATGT TGACGGTTCTGACATGTGAGTAGAGACTTATTAGCAACCGAGATTGCGCCGATCGGCATA-GAGAACGATCCAATTG-TATTTCTCTTTAAT-TGCAGTCCCCCTTGAGATGA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.GACGGTTCGGACATGTGTG.............................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_6500:7228262-7228372 +

35.39

CCACCATTCTGACCTGTGAGTTGATCGATTTCGA------------GGTTTTGGCACACGAATATAATCTGGAATCTTTAATT--------CGCAGTTCCCACCGAAATGT
CTACATTCAGTGCCAGAGAATTTCTCGTTTTTGTAACTGCCTAAATGAAAATAGAATTTAAAAATAACCAAGAATTGTAATTTCATCTTCTTGCAGTACCGCTGGAGATTA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6500:7227571-7227591 +

15.73

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CAGTGGTATTGACCTGTGAGT----------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

None

scaffold_6500:22625692-22625721 +

7.04

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CCTCCATATTGCTCTGCGTGCAAGATG-------------------------------------------------------------CGC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15252:17037648-17037738 +

51.42

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCA-----------CACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TTACGATTTTGTCATGTAAGTCGATCTGTTTGATAGAAATTGTATTCATATAACACAATAATATAAAT-----------ATTTTTAGTCCCACTTGAAATGC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15252:16827853-16827948 -

51.4

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAAT---------CTTTAATTCGCAGTTCCCACCGAAATGT
CCACCATTCTGACATGTAAC--CACTGATCCTGATCCTTGATTGCACTGC--CCATTTTGAATGCGTTTTCTTTCTGCTTTGCAGTTCCCACGGAAATGG

Size

Hit Count

Total Norm

V109
Male body

scaffold_14978:853157-853243 +

49.41

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT CAGTGGTATTGACCTGTAAGTAGATGCA---CATACAATGAATACATTAAGAAAAATGAGTGTCTCTCAT-TGCGGTGCTTGCCCCTTTGT	Size	Hit Count	Total Norm	V109 Male body
.............................................ATTAAGAGAGATGAGTGTC...........................	19	1	1.00	1.00

scaffold_15252:5475593-5475684 +

47.86

CCACCATTCTGACCTGTGAGTTGATCGATTTCGA----GGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CGGGTATATTACGCTGTAAGCTATATAAAATACAATCCGGATTT-GCACTTAACTA-AAACTGATATGCAT-TTTTATAGATCCATTGGAAATCG

Size

Hit Count

Total Norm

V109
Male body

scaffold_15110:13818121-13818208 -

44.39

CCACCATTCTGACCTGTGAG--TTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTA-----ATTCGCAGTTCCCACCGAAATGT
TGCCCATACTCAGCTGTAAGAGTTAGCTAGCATCCATCGTCTTGTTCAGGTCA----------CTCATTAATCACGCTTTCAGATCCGGCTGATGTCA

Size

Hit Count

Total Norm

V109
Male body

scaffold_15203:2167615-2167699 -

42.7

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTT--------TAATTCGCAGTTCCCACCGAAATGT
--------------TGTGTGTATATCGAACTTTAAGTATCTGTTTATCGGTTTCATTTTGGCTTTTACTGTCTCTTTCAGGTGTTTACGTCGGAGCTGC

Size

Hit Count

Total Norm

V109
Male body

scaffold_14978:854064-854125 +

37.82

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
T---------------------AATTGATTTCAAATGTTTAATAAATATATT--------AATTCTGTCTTTGCAGTTCCGCTACACATTC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15252:3652221-3652248 -

20.97

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
TGACAGTACTAACATGTGAGT--ATTGATT-------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

scaffold_15252:3652048-3652064 -

14.61

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
--------------------------------------------------------------------------AGTCCCCATCGAGATGA

Size

Hit Count

Total Norm

V109
Male body

None

scaffold_15252:15009109-15009138 +

6.67

CCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGT
CATCCATATTGCTCTGCATG-------------------------------------------------------------AACGATGCAC

Size

Hit Count

Total Norm

V109
Male body

None

Generated: 04/20/2012 at 05:37:22 EDT