Possible Orthologs for dme-mir-1004

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr2L:3722744-3722841 +	95.96	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCGCGGTGCTTGTA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .............................................................TCTCACATCACTTCCCTCACAG............... 22 1 1133.00 26.00 994.00 20.00 93.00 ...............GTTGGGGGACATTGATCTCGGAGA........................................................... 24 1 728.00 16.00 444.00 55.00 213.00 ...............GTTGGGGGACATTGATCTCGGAG............................................................ 23 1 132.00 3.00 107.00 18.00 4.00 ...............GTTGGGGGACATTGATCTCGGA............................................................. 22 1 122.00 0.00 92.00 22.00 8.00 .............................................................TCTCACATCACTTCCCTCACA................ 21 1 101.00 1.00 97.00 2.00 1.00 ...............GTTGGGGGACATTGATCTCGGAGG........................................................... 24 1 91.00 0.00 46.00 9.00 36.00 ...............GTTGGGGGACATTGATCTCGGAGAA.......................................................... 25 1 25.00 1.00 21.00 2.00 1.00 .............................................................TCTCACATCACTTCCCTCACAC............... 22 1 20.00 0.00 19.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCACAGA.............. 22 1 16.00 0.00 14.00 1.00 1.00 ...............GTTGGGGGACATTGATCTCGGG............................................................. 22 1 11.00 0.00 10.00 1.00 0.00 ..............................................................CTCACATCACTTCCCTCACAGT.............. 22 1 10.00 3.00 6.00 1.00 0.00 ..............................................................CTCACATCACTTCCCTCACAG............... 21 1 10.00 0.00 10.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCAC................. 20 1 9.00 0.00 9.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGAGC........................................................... 24 1 9.00 0.00 5.00 1.00 3.00 ...............GTTGGGGGACATTGATCTCGGAA............................................................ 23 1 8.00 0.00 6.00 2.00 0.00 ...............GTTGGGGGACATTGATCTCGGAGACG......................................................... 26 1 7.00 0.00 3.00 0.00 4.00 ...............GTTGGGGGACATTGATCTCGGAGAC.......................................................... 25 1 7.00 0.00 4.00 3.00 0.00 ...............GTTGGGGGACATTGATCTCGGAAA........................................................... 24 1 6.00 0.00 6.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGAC............................................................ 23 1 6.00 0.00 5.00 1.00 0.00 ................GTTGGGGACATTGATCTCGGAGA........................................................... 23 1 6.00 0.00 2.00 0.00 4.00 .............................................................TCTCACATCACTTCCCTCA.................. 19 1 5.00 0.00 5.00 0.00 0.00 .............................................................TCTCACATCACTTCCCCCACAG............... 22 1 4.00 0.00 4.00 0.00 0.00 ...............GTTGGGGGACATTGATCTC................................................................ 19 1 4.00 0.00 4.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCACGG............... 22 1 4.00 0.00 2.00 2.00 0.00 ..............................................................CTCACATCACTTCCCTCACAGC.............. 22 1 4.00 0.00 4.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCGCAG............... 22 1 3.00 0.00 3.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGG.............................................................. 21 1 3.00 0.00 3.00 0.00 0.00 ..............................................................CTCACATCACTTCCCTCACAGG.............. 22 1 3.00 0.00 3.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCACAGA.............. 23 1 3.00 0.00 3.00 0.00 0.00 ...............GTTGGGTGACATTGATCTCGGAGA........................................................... 24 1 3.00 0.00 2.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCGGAGAT.......................................................... 25 1 2.00 0.00 2.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGAGT........................................................... 24 1 2.00 0.00 2.00 0.00 0.00 ...............GTTGGTGGACATTGATCTCGGAGA........................................................... 24 1 2.00 0.00 1.00 0.00 1.00 ...............GTTGGGGGACATTGATTTCGGAGA........................................................... 24 1 2.00 0.00 0.00 0.00 2.00 .............................................................TCTCACATCACTCCCCTCACAG............... 22 1 2.00 0.00 1.00 0.00 1.00 .............................................................TCTCACATCACTTCCCTCACAGT.............. 23 1 2.00 0.00 2.00 0.00 0.00 .............................................................TCCCACATCACTTCCCTCACAG............... 22 1 2.00 0.00 2.00 0.00 0.00 ...............GTTGGGGGACATTGGTCTCGGA............................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ...............CTTGGGGGACATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 0.00 0.00 1.00 .............................................................TCTCACATCACTTCACTCACAG............... 22 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGGGGGACATTGCTCTCGGAGA........................................................... 24 1 1.00 0.00 0.00 0.00 1.00 ...............GTTGAGGGACATTGATCTCGGAGACG......................................................... 26 1 1.00 0.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCGGTGA........................................................... 24 1 1.00 1.00 0.00 0.00 0.00 .............................................................TCCCACATCACTTCCCTCTCAG............... 22 1 1.00 1.00 0.00 0.00 0.00 .............................................................TCTCACTTCACTTCCCTCACAG............... 22 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGGGGGACATTGATCTAGGAGA........................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ................GTTGGGGACATTGATCTCGGAG............................................................ 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACATTACTTCCCTCACAG............... 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACACCACTTCCCTCACAC............... 22 1 1.00 0.00 1.00 0.00 0.00 ..................................................CTGATCCATTxTCTCACACC............................ 19 1 1.00 0.00 0.00 0.00 1.00 ...............GTTGGGGTACATTGATCTCGGG............................................................. 22 1 1.00 0.00 1.00 0.00 0.00 ................TTGGGGGACATTGATCTCGGAGA........................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGTTGGACATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGAGAAA......................................................... 26 1 1.00 0.00 1.00 0.00 0.00 ................GTTGGGGACATTGATCTCGGAGACG......................................................... 25 1 1.00 0.00 1.00 0.00 0.00 ...............................................................TCACATAACTTCCCTCACAGT.............. 21 1 1.00 0.00 1.00 0.00 0.00 ................GTTGGGGACATTGATCTCGG.............................................................. 20 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGGGCGACATTGATCTCGGAG............................................................ 23 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTGACAG............... 22 1 1.00 0.00 0.00 0.00 1.00 ...............GTTGTGGGACATTGATCTCGGAG............................................................ 23 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCACAGAA............. 24 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACACCACTTCCCTCACAG............... 22 1 1.00 0.00 0.00 0.00 1.00 ....................GGGACATTGATCTCGGAGG........................................................... 19 1 1.00 0.00 1.00 0.00 0.00 ...............GTTCGGGGACATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 0.00 0.00 1.00 .............................................................GCTCACATCACTTCCCTCACAG............... 22 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGAAT........................................................... 24 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCACTG............... 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACATCACTTCCTTCACAG............... 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TATCACATCACTTCCCTCACAG............... 22 1 1.00 1.00 0.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGC............................................................. 22 1 1.00 0.00 1.00 0.00 0.00 ...............GCTGGGGGACATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGGTCTCGGAG............................................................ 23 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACATCACTTCACTCAC................. 20 1 1.00 0.00 1.00 0.00 0.00 ................TTGGGGGACATTGATCTCGGAG............................................................ 22 1 1.00 0.00 0.00 1.00 0.00 .............................................................TCTCACATCACTTCGCTCACAG............... 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TCTCACGTCACTTCCCTCACAG............... 22 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGGGGGCCATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 1.00 0.00 0.00 ...............................................................TCACATCACTTCCCTCACAGT.............. 21 1 1.00 0.00 1.00 0.00 0.00 ...............GTTGGGGTACATTGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
12	super_5:1870685-1870782 +	94.96	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTTGGGGGACATTGATCTCTGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCGCGGTGCTTGTA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...............GTTGGGGGACATTGATCTCTGAG............................................................ 23 1 120.00 10.00 36.00 74.00 .............................................................TCTCACATCACTTCCCTCACAG............... 22 1 84.00 2.00 16.00 66.00 ...............GTTGGGGGACATTGATCTCTGAGA........................................................... 24 1 53.00 1.00 25.00 27.00 ..............................................................CTCACATCACTTCCCTCACAGT.............. 22 1 23.00 0.00 12.00 11.00 .............................................................TCTCACATCACTTCCCTCACA................ 21 1 19.00 0.00 1.00 18.00 ...............................................................TCACATCACTTCCCTCACAGT.............. 21 1 18.00 0.00 2.00 16.00 ...............GTTGGGGGACATTGATCTCTGA............................................................. 22 1 7.00 0.00 2.00 5.00 ...............GTTGGGGGACATTGATCTCTG.............................................................. 21 1 4.00 0.00 0.00 4.00 .............................................................TCTCACATCACTTCCCTCACAGT.............. 23 1 4.00 0.00 0.00 4.00 ...............GTTGGGGGACATTGATCTCTGAGACG......................................................... 26 1 4.00 0.00 3.00 1.00 .............AGGTTGGGGGAxATTGATG.................................................................. 18 1 3.00 1.00 0.00 2.00 ...............GTTGGGGGACATTGATCTCT............................................................... 20 1 2.00 0.00 0.00 2.00 .............................................................TCTCACATCACTTCCCTCAC................. 20 1 2.00 0.00 0.00 2.00 ...............GTTGGGGGACATTGATCTCTGAGAA.......................................................... 25 1 2.00 0.00 0.00 2.00 .............AGGTTGGGGGxCATTGATG.................................................................. 18 1 1.00 1.00 0.00 0.00 ...............GTTGGTGGACATTGATCTCTGAG............................................................ 23 1 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCTTAGA........................................................... 24 1 1.00 0.00 1.00 0.00 .............................................................TCTCACATCACTCCCCTCACA................ 21 1 1.00 0.00 0.00 1.00 .............................................................TCTCAAATCACTTCCCTCACAG............... 22 1 1.00 0.00 1.00 0.00 ......................................ACGGCGGTTTAACTGACCCCTTCT.................................... 24 1 1.00 0.00 0.00 1.00 ...............................................................TCACATCACTTTCCTCACAGT.............. 21 1 1.00 0.00 1.00 0.00 ................TTGGGGGACATTGATCTCTGAGA........................................................... 23 1 1.00 1.00 0.00 0.00 ...............GTTGGGGGCCATTGATCTCTGAG............................................................ 23 1 1.00 0.00 0.00 1.00 .................................................................ACATCACTTCCCTCACAGT.............. 19 1 1.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTTACAGT.............. 22 1 1.00 0.00 0.00 1.00 .............................................................TCTCACATCACTTCCCCCACAG............... 22 1 1.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCACA................ 20 1 1.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCGCAGT.............. 22 1 1.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGACCTCTG.............................................................. 21 1 1.00 0.00 1.00 0.00 ...............................................................TCTCATCACTTCCCTCACA................ 19 1 1.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGTTCTCTGAG............................................................ 23 1 1.00 0.00 0.00 1.00 ......................................ACGGCGGTTTAACTGATCCATTCT.................................... 24 1 1.00 0.00 0.00 1.00 .............................................................TCTCACATCACTTCCCTCAAAG............... 22 1 1.00 0.00 0.00 1.00 ..............................................................CTCACGTCACTTCCCTCACAGT.............. 22 1 1.00 0.00 1.00 0.00 ..............................................................CTCACATCACTTCCCTCACAGA.............. 22 1 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCTAAG............................................................ 23 1 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTC................................................................ 19 1 1.00 0.00 0.00 1.00 ................................................................CACATCACTTCCCTCACAG............... 19 1 1.00 0.00 0.00 1.00 ...............................................................TCAAATCACTTCCCTCACAGT.............. 21 1 1.00 0.00 0.00 1.00 .............................................................ACTCACATCACTTCCCTCACAG............... 22 1 1.00 0.00 0.00 1.00 ...............GTTGGGGGACCTTGATCTCTGAG............................................................ 23 1 1.00 0.00 1.00 0.00 ...............GTCGGGGGACATTGATCTCTGAGA........................................................... 24 1 1.00 0.00 1.00 0.00 .............................................................TCTCACATCACTCCCCTCACAG............... 22 1 1.00 1.00 0.00 0.00 ...............GTTGGGGGACATTGATCCCTGAG............................................................ 23 1 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATCGATCTCTGAGA........................................................... 24 1 1.00 0.00 1.00 0.00 ...............GTTCGGGGACATTGATCTCTGAG............................................................ 23 1 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCTGAGATT......................................................... 26 1 1.00 0.00 0.00 1.00 ...............................................................TCACATCACTTCCCTCACAGA.............. 21 1 1.00 1.00 0.00 0.00 .............................................................TCCCACATCACTTCCCTCACAG............... 22 1 1.00 0.00 0.00 1.00 .....................GGACATTGATCTCTGAGACGGC....................................................... 22 1 1.00 1.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCTGAGAC.......................................................... 25 1 1.00 0.00 0.00 1.00 ...............GTTGGGGGACACTGATCTCTGAG............................................................ 23 1 1.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCTGAGC........................................................... 24 1 1.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCACAGC.............. 22 1 1.00 0.00 0.00 1.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr2L:3769291-3769388 +	93.96	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCGCGATGTTTGTA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .............................................................TCTCACATCACTTCCCTCACAG............... 22 1 454.00 36.00 26.00 3.00 37.00 352.00 ...............GTTGGGGGACATTGATCTCGGAGA........................................................... 24 1 373.00 11.00 8.00 8.00 15.00 331.00 ...............GTTGGGGGACATTGATCTCGGAG............................................................ 23 1 98.00 0.00 24.00 10.00 38.00 26.00 .............................................................TCTCACATCACTTCCCTCACA................ 21 1 56.00 0.00 11.00 1.00 6.00 38.00 ...............GTTGGGGGACATTGATCTCGGAGG........................................................... 24 1 35.00 0.00 0.00 0.00 0.00 35.00 ...............GTTGGGGGACATTGATCTCGGA............................................................. 22 1 25.00 1.00 3.00 5.00 8.00 8.00 ..............................................................CTCACATCACTTCCCTCACAGT.............. 22 1 25.00 2.00 8.00 1.00 12.00 2.00 ...............GTTGGGGGACATTGATCTCGGAGAA.......................................................... 25 1 16.00 1.00 1.00 0.00 0.00 14.00 .............................................................TCTCACATCACTTCCCTCAC................. 20 1 14.00 0.00 3.00 0.00 3.00 8.00 ...............GTTGGGGGACATTGATCTCGGAGC........................................................... 24 1 10.00 0.00 0.00 0.00 1.00 9.00 .............................................................TCTCACATCACTTCCCTCACAC............... 22 1 7.00 0.00 0.00 0.00 0.00 7.00 ...............GTTGGGGGACATTGATCTCGGAGACG......................................................... 26 1 7.00 0.00 0.00 0.00 1.00 6.00 .............................................................TCTCACATCACTTCCCTCCCAG............... 22 1 5.00 0.00 0.00 0.00 2.00 3.00 ...............GTTGGGGGCCATTGATCTCGGAGA........................................................... 24 1 5.00 0.00 0.00 0.00 0.00 5.00 .............................................................TCTCACATCACTTCCCTCACCG............... 22 1 4.00 0.00 1.00 0.00 2.00 1.00 ...............GTTGGGGGACATTGATCTCGGCG............................................................ 23 1 4.00 0.00 0.00 1.00 3.00 0.00 ...............................................................TCACATCACTTCCCTCACAGT.............. 21 1 4.00 0.00 2.00 0.00 2.00 0.00 ...............GTTGGGGGACATTGATCTCGGAGAC.......................................................... 25 1 3.00 1.00 0.00 0.00 0.00 2.00 .............................................................TCTCACATCACTTCCCTCA.................. 19 1 3.00 0.00 0.00 0.00 0.00 3.00 .............................................................TCTCACATCACTTCCCTCACAGT.............. 23 1 3.00 1.00 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCTGAG............................................................ 23 1 2.00 0.00 0.00 0.00 2.00 0.00 ...............GTTGGGGGACATTGATCTCGGAAA........................................................... 24 1 2.00 0.00 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCGG.............................................................. 21 1 2.00 0.00 2.00 0.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGCGA........................................................... 24 1 2.00 0.00 1.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCGGG............................................................. 22 1 2.00 0.00 0.00 0.00 0.00 2.00 .............................................................TCTCACATCACTTCCCCCACAG............... 22 1 2.00 0.00 1.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTC................................................................ 19 1 2.00 0.00 0.00 0.00 0.00 2.00 ...............GTTGGGGGACATTGATCTCGGTG............................................................ 23 1 2.00 0.00 0.00 0.00 2.00 0.00 .............................................................TCTCACATCAGTTCCCTCACAC............... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGAACATTGATCTCGGA............................................................. 22 1 1.00 0.00 1.00 0.00 0.00 0.00 ...............GTTGGGGGACATTGATCT................................................................. 18 1 1.00 0.00 1.00 0.00 0.00 0.00 ...............................................................TCACATCACTTCCCTCACAG............... 20 1 1.00 0.00 1.00 0.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCACAA............... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGGGCATTGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................CTGACATCACTGCCCTCACAGT.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCGGAGT........................................................... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTAGGGGACATTGATCCCGGAGA........................................................... 24 1 1.00 0.00 1.00 0.00 0.00 0.00 ...............GTCGGGGGACATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCACAGG.............. 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCACA................ 20 1 1.00 0.00 0.00 0.00 0.00 1.00 ................TTGGGGGACATTGATCTCGGAGG........................................................... 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............CGTTGGGGGACATTGATCTCGGAG............................................................ 24 1 1.00 0.00 0.00 0.00 1.00 0.00 ....................GGGACATTGATCTCGGAG............................................................ 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTCGGAT............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TCTCACATCACTTCCCTCACAGA.............. 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCGGGG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCGGACA........................................................... 24 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGTCATTGATCTCGGAGG........................................................... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCCCAGT.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TCTCACATCACTTACCTCACAG............... 22 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TCTCACATCACTCCCCTCACAG............... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 .............................................................GCTCACATCACTTCCCTCACAG............... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTCGGGGACATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 .............................................................TCTCACATCACTACCCTCACAG............... 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGAGGGACATCGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ..............................................................CTCACATCACTTCCCTCACAAT.............. 22 1 1.00 1.00 0.00 0.00 0.00 0.00 ..............................................................CTCACATCACTTCCCTCACAG............... 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCACATT.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ..............................................................CTCACATCACTTCCCTCACCGT.............. 22 1 1.00 0.00 1.00 0.00 0.00 0.00 .............................................................TCTCACATCACTTCCCTCACGG............... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGGACATTGATCTGGGTG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGAACATTGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTAGGGGACATTGATCTCGGAG............................................................ 23 1 1.00 0.00 1.00 0.00 0.00 0.00 ..............................................................CTCACATCACTTCCCTAACTGT.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATGGATCACGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGATATTGATCTCGGAGA........................................................... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCCCTCACCGG.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ..............................................................CCCACATCACTTCCCTCCCAGT.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TCTTACGTCACTTCCCTCACAG............... 22 1 1.00 1.00 0.00 0.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGAAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TCTCACATCACTTCCCTCACC................ 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGAGGACATTGATCTCGCAGA........................................................... 24 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TATCACATCACTTCCCTCTCAG............... 22 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................CCTCACATCACTTCCCTCACA................ 21 1 1.00 0.00 0.00 0.00 0.00 1.00 .............................ATCTCGGAGxCGGTGGTT................................................... 17 1 1.00 0.00 0.00 0.00 1.00 0.00 ..............................................................CTCACATCACTTCCCCCACAGT.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TCTTACATCACTTCCCTCACAG............... 22 1 1.00 1.00 0.00 0.00 0.00 0.00 ...............GATGGGGGACATTGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCGGAGAAAG........................................................ 27 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGGAAATTGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCG............................................................... 20 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGATCTCAGA............................................................. 22 1 1.00 0.00 1.00 0.00 0.00 0.00 ...............GTTGGGGGACATTGATCTCGGAC............................................................ 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ..............................................................CTCACATCACTTCACTCACAGT.............. 22 1 1.00 0.00 1.00 0.00 0.00 0.00 ...............GTTGGGTGACATTGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGGACGTTGATCTCGGAGC........................................................... 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGTACATTGCTCTCGG.............................................................. 21 1 1.00 0.00 0.00 0.00 1.00 0.00 ...................GGGGACATTGATCTCGGAGA........................................................... 20 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTTGGGGGCCATTGATCTCGGAG............................................................ 23 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................TCTCACCTCTCTTCCCTCACAG............... 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ..............................................................ATCACATCACTTCCCTCACAGT.............. 22 1 1.00 0.00 1.00 0.00 0.00 0.00 .............................................................TATCGCATCACTTCCCTCACAG............... 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTTGGGGGACATTGCTCTCGG.............................................................. 21 1 1.00 0.00 0.00 0.00 1.00 0.00 ................GTTGGGGACATTGATCTCGGAGA........................................................... 23 1 1.00 0.00 0.00 0.00 0.00 1.00 .............................................................TCTCACATCACTTCCCCCACA................ 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............................................................TCACATCACTTCCCTCACA................ 19 1 1.00 0.00 1.00 0.00 0.00 0.00

droEre2 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
283	scaffold_4929:3814030-3814127 +	94.96	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCAATCTCTCACATCACTTCCCTCACAGTGCGCGGTGCTTGTA Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .............................................................TCTCACATCACTTCCCTCACAG............... 22 1 506.00 35.00 66.00 0.00 405.00 ...............GTTGGGGGACATTGATCTCGGAGA........................................................... 24 1 248.00 14.00 13.00 0.00 221.00 ...............GTTGGGGGACATTGATCTCGGAG............................................................ 23 1 146.00 2.00 17.00 0.00 127.00 ..............................................................CTCACATCACTTCCCTCACAGT.............. 22 1 82.00 1.00 10.00 0.00 71.00 .............................................................TCTCACATCACTTCCCTCACA................ 21 1 76.00 1.00 13.00 0.00 62.00 ...............GTTGGGGGACATTGATCTCGG.............................................................. 21 1 20.00 0.00 2.00 0.00 18.00 ...............GTTGGGGGACATTGATCTCGGA............................................................. 22 1 19.00 0.00 1.00 0.00 18.00 .............................................................TCTCACATCACTTCCATCACAG............... 22 1 11.00 0.00 0.00 0.00 11.00 .............................................................TCTCACATCACTTCCCTCAC................. 20 1 7.00 0.00 0.00 0.00 7.00 ...............GTTGTGGGACATTGATCTCGGAGA........................................................... 24 1 7.00 0.00 0.00 0.00 7.00 .............................................................TCTCACATCACTTCCCTCACAGT.............. 23 1 6.00 0.00 0.00 0.00 6.00 ...............GTTGGGGGACATTGATCTCTGAGA........................................................... 24 1 5.00 0.00 0.00 0.00 5.00 ...............................................................TCACATCACTTCCCTCACAGT.............. 21 1 5.00 0.00 1.00 0.00 4.00 ...............GTTTGGGGACATTGATCTCGGAGA........................................................... 24 1 5.00 0.00 0.00 0.00 5.00 ...............GTTGGGGGACATTGATCTCGGAGACG......................................................... 26 1 5.00 0.00 0.00 0.00 5.00 ..............................................................CTCACATCACTTCCCTCACAGA.............. 22 1 5.00 0.00 0.00 0.00 5.00 ...............GTTTGGGGACATTGATCTCGGAG............................................................ 23 1 5.00 0.00 0.00 0.00 5.00 ...............................................................TCACATCACTTCCCTCACAG............... 20 1 4.00 1.00 1.00 0.00 2.00 ..............................................................CTCACATCACTTCCCTCACAG............... 21 1 4.00 0.00 0.00 0.00 4.00 .............................................................TATCACATCACTTCCCTCACAG............... 22 1 4.00 0.00 0.00 0.00 4.00 ...............GTTGGGGGACATTGATCTCGGAA............................................................ 23 1 4.00 0.00 1.00 0.00 3.00 .............................................................TCTCACATCACTTCACTCACAG............... 22 1 4.00 0.00 0.00 0.00 4.00 .............................................................TCTCACATCACTTCCCTAACAG............... 22 1 4.00 0.00 0.00 0.00 4.00 .............................................................TCTCGCATCACTTCCCTCACAG............... 22 1 4.00 1.00 0.00 0.00 3.00 ...............GTTGGGGGACATTGATCTCGGATA........................................................... 24 1 4.00 0.00 0.00 0.00 4.00 ...............GTTGGTGGACATTGATCTCGGAGA........................................................... 24 1 3.00 0.00 0.00 0.00 3.00 ...............GTTGGGGGACATTGATCTCGGAT............................................................ 23 1 3.00 0.00 0.00 0.00 3.00 ...............GTTGGGGGACATTGATCTCGGACA........................................................... 24 1 3.00 0.00 0.00 0.00 3.00 .............................................................TCTCACATCACTTCCCTCACCG............... 22 1 3.00 2.00 1.00 0.00 0.00 .............................................................TCTCACATAACTTCCCTCACAG............... 22 1 3.00 0.00 0.00 0.00 3.00 ...............GTTGGTGGACATTGATCTCGGAG............................................................ 23 1 3.00 0.00 0.00 0.00 3.00 .............................................................TCTCACATCACTTCCCTCA.................. 19 1 3.00 0.00 0.00 0.00 3.00 ...............GTTGTGGGACATTGATCTCGGAG............................................................ 23 1 3.00 0.00 0.00 0.00 3.00 ...............GTTGGGGGACATTGATCTCGGAGC........................................................... 24 1 3.00 0.00 1.00 0.00 2.00
464	scaffold_4820:5809458-5809504 -	24.48	GTGGCTGGAC---AAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA CCGGGTATACCGCCAAATGCTATTCACCACCGATC-CAAAGATAGCGG----------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
42	scaffold_4690:6750525-6750551 +	16.67	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA CAAGCTGATCAACATTCTGGAGGAGAT----------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .........CAACAATCTGGAGAAGAT----------------------------------------------------------------------- 18 1 1.00 0.00 0.00 0.00 1.00

droFic1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
10	scf7180000453924:1748603-1748705 +	77.82	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGA----------CGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTTGGGGGACACTGATCTCGGAGAATCGCTCATTCG-----CTCACTGATCCATTCTCTCACATCTCTTCCCTCACAGCGCGCGGGGCCTGTA Size Hit Count Total Norm
23	scf7180000454096:1471411-1471435 -	15.63	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GCGCGAGAACAAGATGATGGAGAAC------------------------------------------------------------------------- Size Hit Count Total Norm		None

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
150	scf7180000409554:2307491-2307593 -	79.63	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGC-----GGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAAAGGTTGGGGGACACTGATCTCGGAGATCGCTGATCCGATTTACTGATCTATTCTCTCACATCACTTCCCTCACAGCGCGCGGTGCCTGTA Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
20	scf7180000302261:2154110-2154211 +	83.04	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGT------TTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTTGGGGGACACTGATCTCGGAGACTG--ATCCATTCCTTACTGATCCACTCTCTCACATCACTTCCCTCACAGTGCGCGGTGCTTGTA Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
18	scf7180000415709:76418-76520 -	84.15	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGG----CGGT-TTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAAAGGTTGGGGGACACTGATCTCGGAGACTGATCCCGATCTTTACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCGCGGTGCTTGTA Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
18	scf7180000490728:519645-519748 +	70.12	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGAC------GGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAAAGGTGCGGTTTCATTGATCTTGGAGACCTTTTCGACTATCCTAGTGATCCATTCTCTCACATCACTTCCCTTATAGCGCGAGGTGCCTGTA Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
29	scf7180000777886:5849-5946 -	89.96	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAAAGGTTGGGGGACATTGATCTTGGAGACGGCTGGCTTACTGATCCATTCTCTCACATCACTTCCCTCACAGCGCGCGGTGCCTGTA Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
29	scf7180000302401:685585-685686 +	69.02	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGA-------CGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTCGACAAGAGGT-GAAGGACACTGATCTTAGAGAAAGGCAACAGCAAATTATATG--TAATTCTCTCACATCACTTCCTTCACAGTGCGAGGTGCTTGTA Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_12916:5837615-5837739 +	39.91	GTGGCTGGACAAAAGGTTGGGGGACAT-----------------------------TGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTGAGATAACACGTTCTAACCAACTGATATGAAACTACGAATGTTTTTATCGCTGTCGATTCGAACGATCTCTCATATAACCGTAC--CTATTACAGTGCGCGGTGTCTGTA Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ..................................................................GCTGTCGATTCGAACGATC.......................................... 19 1 6.00 1.00 4.00 1.00 0.00 ...............................................................ATCGCTGTCGATTCGAACGATC.......................................... 22 1 3.00 0.00 3.00 0.00 0.00 .........................................................GTTTTTATCGCTGTCGATTCGA................................................ 22 1 3.00 0.00 3.00 0.00 0.00 ..........................CGTTCTAACCAACTGATATGAAACT............................................................................ 25 1 2.00 0.00 2.00 0.00 0.00 ....................................AACTGATATGAAACTACGAAT...................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 .............................................................TTATCGCTGTCGATTCGAACGATC.......................................... 24 1 1.00 1.00 0.00 0.00 0.00 .......................................TGATATGAAACTACGAATGT.................................................................... 20 1 1.00 1.00 0.00 0.00 0.00 ..................................................................GCTGTCGATTCGAACGATCT......................................... 20 1 1.00 1.00 0.00 0.00 0.00 GTGGCTGGTCAAGAAGTG............................................................................................................. 18 1 1.00 0.00 1.00 0.00 0.00 ........................................GATATGAAACTACGAATGTTTT................................................................. 22 1 1.00 0.00 1.00 0.00 0.00 ...............................................AACTACGAATGTTTTTATCGC........................................................... 21 1 1.00 0.00 1.00 0.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
52	scf7180000396568:1004375-1004463 -	55.07	GTGGCTGGACAAAAGGTTGGGGGACATTGA-TCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCAC---TTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTACG-----ATCGAATCTC--------TCGTATAATTCAAACGATCTCTCATATAACCGTCTCTCCTACAGTGCCCGGTGTTTGTA Size Hit Count Total Norm

dp4 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
59	chr4_group3:4962038-4962146 -	61.41	GTGGCTGGACAAAAGGT-TGGGGGACATTGATCTCGGAGA----------------CG-GCGGTTTAACTGATCCATTCTCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTGTGTGGGATACTGATTTTAGAGAAAAAAAAAACCATTAACGTGAGGCTT--------CG-TTTCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body .................................................................................TCACATCATTTTCCCCTCACAGT.............. 23 1 42.00 4.00 2.00 36.00 0.00 .................................................................................TCACATCATTTTCCCCTCACAG............... 22 1 17.00 1.00 2.00 14.00 0.00 ...............GTGTGTGGGATACTGATTTTAGAGA.............................................................................. 25 1 3.00 2.00 1.00 0.00 0.00 .................................................................................TCACATCATTTTCCCCTCACA................ 21 1 2.00 0.00 0.00 2.00 0.00 ...................................................................................ACATCATTTTCCCCTCACAGT.............. 21 1 2.00 0.00 0.00 2.00 0.00 .................................................................................TCACATCAxTTTCCCCTCACAGT.............. 22 1 1.00 1.00 0.00 0.00 0.00 ...........AGTGGTGTTTGGGATACTG........................................................................................ 19 1 1.00 1.00 0.00 0.00 0.00 .................................................................................TCACATCATTTTCCACTCACAGT.............. 23 1 1.00 0.00 0.00 1.00 0.00 .................................................................................TCACATCATTTTCCCCTCACGG............... 22 1 1.00 0.00 1.00 0.00 0.00 .TGGCTTGATAAGAGGTGTGTGG............................................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 ..................................................................................CACATCATTTTCCCCTCACAGT.............. 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................................TCACATCATGTTCCCCTCACA................ 21 1 1.00 0.00 0.00 1.00 0.00 .................................................................................TCACAACATTTACCCCTCACAGT.............. 23 1 1.00 0.00 1.00 0.00 0.00 .................................................................................TCACATCATTTTAACCTCACAGT.............. 23 1 1.00 0.00 0.00 1.00 0.00 .................................................................................TCACATCATTCTCCCCTCACAGT.............. 23 1 1.00 0.00 0.00 1.00 0.00 .................................................................................TCACATCATTTTCCCCTCACAA............... 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................................TCACATCATTTTCCCCTCACAGA.............. 23 1 1.00 0.00 0.00 1.00 0.00

droPer1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
54	super_1:6454682-6454788 -	63.73	GTGGCTGGACAAAAGGT-TGGGGGACATTGATCTCGGAGA----CGGCGGTTTAAC-TGA---TCCATTCTCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTGTGTGGGATACTGATTTTAGAGAAAAATAACCAT-TAACGTGAGGCTTCG-TTTCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ........................................................................TCACATCATTTTCCCCTCACAGT.............. 23 1 45.00 1.00 0.00 18.00 25.00 1.00 ........................................................................TCACATCATTTTCCCCTCACAG............... 22 1 20.00 0.00 3.00 8.00 9.00 0.00 ...............GTGTGTGGGATACTGATTTTAGAGA..................................................................... 25 1 11.00 6.00 0.00 1.00 2.00 2.00 ........................................................................TCACATCATTTTCCCCTCACA................ 21 1 10.00 0.00 0.00 4.00 6.00 0.00 .........................................................................CACATCATTTTCCCCTCACAGT.............. 22 1 3.00 0.00 0.00 3.00 0.00 0.00 ........................................................................TCACATCATTTTCCCCTCAAAG............... 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................TCACACCATTTTCCCCTCACAGT.............. 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................TAACATCATCTTCCCCTCACAGT.............. 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................TCACATCATTTTCCCCTCACAGC.............. 23 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................................CACATCATTTTCACCTCACAGT.............. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTGTGTGGGATACGGATTTTAGAGA..................................................................... 25 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................TCACATCATTTTCCCCTCGCT................ 21 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............GTGAGTGGGATACTGATTTTAGAGA..................................................................... 25 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................................CACATCATTTTCCCCTCACAG............... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................TCACATCATTTGCCCCTCACAGT.............. 23 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................................CACATCATTTTCCCCTCACA................ 20 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................................CACATCATTTCCCCCTCACA................ 20 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................TCACATCATTTTCCGCTCACCGT.............. 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................TCACATCATTTTCACCTCACAG............... 22 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................TCACATCATTTTCCCCTCAGAGT.............. 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ...............GTGTGTGGGATACTGATTTTAGAGAA.................................................................... 26 1 1.00 0.00 0.00 0.00 1.00 0.00

droWil1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
270	scaffold_180708:9298763-9298869 -	51.51	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTC--AC-------ATCACTT--CCCTCACAGTGCACGGTGCTTGTA ATGGTTGGATAAAAGGT-GGGGTACAACAACAACAAAAAT-ACGAATATAATGGTAAACTCTCTCTCTCATCTCTTATCATTTTCTCCTCACAGTGCGCGTTCACTTTA Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head .....................GTACAACAACAATAAGAA...................................................................... 18 7 0.29 0.00 0.29 0.00 0.00 ..........................ACAACAACAAAAAT-ACCAAC.............................................................. 20 30 0.03 0.00 0.03 0.00 0.00 .....................GTACAACAACAACAAGAAG-A................................................................... 20 2 0.50 0.00 0.00 0.00 0.50 ...................GGGTAGAACAAAAACAAAA....................................................................... 19 7 0.14 0.00 0.14 0.00 0.00 .........................AACAACAACGAAAAT-ACGT................................................................ 19 1 1.00 1.00 0.00 0.00 0.00 .......................ACAACAACAACAAAATA-ACGA................................................................ 21 6 0.17 0.17 0.00 0.00 0.00

droVir3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
673	scaffold_12963:14941260-14941364 -	64.44	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGA------CGGCGGTTTAACTGATCCATTCTCTCACATCAC-TTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAAAGGTTGGGGCACATTGATCTTCAAGAAACTCACAGCCAGCTCATTTACTCACTCTCTCTCTCTTCTCTCCCTCACAGTGCCCGCTGTCTGTA Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head .............................................................TCAGTCTCTCTCTCTCCT.......................... 18 7 0.71 0.00 0.00 0.00 0.00 0.71 ........................CATTGAACTTCAAGAACC............................................................... 18 2 0.50 0.00 0.00 0.00 0.50 0.00

droMoj3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
546	scaffold_6500:17898451-17898546 -	60.2	GTGGCTGGACAAAAGGTTGGGGGACATTG--ATCTCGGAGACGGCGGTT----TAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAGAGGTAATTGATCACTCCTATCTCTGTCTCT---CTTTCTCTTTCTG----ACTCTCTCCCA-CTCTTTATTTGTAGTGCTCGCTGCCTGTA Size Hit Count Total Norm V110 Male body V056 Unknown V049 Head V041 Embryo ....................TGATTACTxCTATCTCTGTCTCT---C......................................................... 23 1 1.00 0.00 0.00 1.00 0.00

droGri2 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
580	scaffold_15112:3331138-3331230 -	42.7	GTGGCTGGACAAAAGGTTGGGG--GACATTGATCTCGGAGACGGCGGTTTAACTGATCCATT-CTCTCACATCACTTCCCTCACAGTGCACGGTGCTT-GTA -TATCTGTATAGATAGATGTATATATTATTGA--TCAGCAGCAGAAGTTCAGCAAGTTCGATTTTCTGTTAACA-------AATGACATCCAGCTTTTGATA Size Hit Count Total Norm V109 Male body
255	scaffold_15126:4437367-4437497 +	39.16	GTGGCTGGACAAAAGGTTGGGG--GACATTGATCTCGGAGACGGC---GG-----------------------------TTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GTGGCTGGACAAAAGGTAGGAGAGCACATTGATCTTGAAGAAACTTGCAGAAAACTCTCTAATACTCTCACTCCATTTCTCTAACTCTCCCTCTCTCTTATTTAACTTCA-TTTTAGTGCGCGCTGTTTATA Size Hit Count Total Norm V109 Male body
659	scaffold_15203:11845998-11846046 -	29.6	GTGGCTGGACAAAAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCACGGTGCTTGTA GCGGCTGGCAACAGTGGTGGCG-GCGGCGGCGGCGGAGGTGGAGGTGGAA------------------------------------------------ Size Hit Count Total Norm V109 Male body ................GTGGCG-GCGGCAGCGGAGGAGG........................................................... 22 1 1.00 1.00 .....................G-GCGGCGGCGGTGGAGGAGGAGG..................................................... 23 2 0.50 0.50 ...........CATTGGTGGCG-GTGGCGG.................................................................... 18 1 1.00 1.00 .......................GCGGCGGCGGCGGAGGTGGTGGTGGAG------------------------------------------------ 27 2 0.50 0.50 ............AGTGGTGGCA-GCGGCGTCG.................................................................. 19 1 1.00 1.00 .............GTGGTGGCG-GCGGTGGAGGCG............................................................... 21 4 0.25 0.25

Generated: 04/20/2012 at 05:24:17 EDT