dme-mir-1002- 12- and 20-way alignments

dme-mir-1002	chr2L:13747609-13747697 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_intron

Legend:

   mature strand at position 13747660-13747683
   star strand at position 13747621-13747642
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2L:13747594-13747712 -	TGT----------------------ATCGGAATTA-ATTAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGA-TTT------GATATAA-AAGTGTCGCATTGTATGACCTACTTAACTAGCTGATTTTGTATCC---CAACAT------------------------------------------------------------------------------------AATAG
droSim1	chr2L:13506512-13506649 -	TGTC---GGAATAAATATAATAATAATCGGAAATA-TTTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGA-TTT------GATATAA-AAGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTC---CAACAT------------------------------------------------------------------------------------AAAAT
droSec1	super_3:14439-14576 -	TGTC---GGAATAAATATAATAATAATCGGAAATA-TTTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGA-TTT------GATATAA-AAGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTC---CAACAT------------------------------------------------------------------------------------AAAAT
droYak2	chr2L:10159914-10160031 -	TATG---C-----------------TTCGAAGTTT-TtttttttTTtTtTtTTTttGTAGTGGATACAAAAGGCGA-TT-------GATATAA-AAATGTCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATCC---CAACTT------------------------------------------------------------------------------------A--CA
droEre2	scaffold_4929:11719032-11719139 +	TTG----------------------ATC------------AAAATTATATATCTAAGTAGTGGATACAAACGGCGA-TTT------GGTATAA-AAATGTCGCATTGTATGACCTGCTTAACTAGCTGATTTTGTATCC---CAACGT------------------------------------------------------------------------------------ACAAA
droAna3	scaffold_12943:1815397-1815517 -	AGTT---TTCATAAAT---------ATCTGTGCAA-AC--TAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGA-CTA------AATAAAA-TATACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTG---CAAGCATC-----------------------------------------------------------------------------------------CA
dp4	chr4_group1:1722950-1723115 +	A----------------------------------------------------------GTTGATACAA-GGGCGA-TAA------TGTAAAAGAACTTTCGCATTGTGTGACCTACTTAAATGCTCGATTGTTT---CAAGCAACCTCTAAAATCTACCTGGAGTAGCCCCAAAGTGACAAGTTATATGGTTTATTTTTAGAAGTGTGTAGCCCTTTAGGACTGCTGATTCAAT--
droPer1	super_5:3483378-3483543 -	A----------------------------------------------------------GTTGATACAA-GGGCGA-TAA------TGTAAAAGAACTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTT---CAAGCAACCTCTAAAATCTACCTGGAGTAGCCCCAAATTGACAAGTTATATGGTTTATTTTTAGAAGTGTGTATCCCTTTAGGAATGCTGATTCAAT--
droWil1	scaffold_180772:545434-545555 +	TGTTCATT---------------TGATCTGG-TCA-TTGAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGA-TTCGTATTCCAT---T-GTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTTTC---CAAACAAC-----------------------------------------------------------------------------------------AA
droVir3	scaffold_12723:5043867-5043993 +	TCAG---TA---AGGCTT------GCCCATAAATGTCTTGAAAATTTGTCATTTAAGTAGGTCACACAA--TGCGA-TGC------AAGAAAA-AA-CTCGCCCTTGTATTAACTACTTAAGCGTTCAATTTT-CATTG---CAGCAA-----------------------------------------------------------------------------------GCCTTA
droMoj3	scaffold_6500:16663657-16663776 -	AAAG---TT---AAGTAAAATAACAAACTTAAG----TTGAATATTATACATATATATAA---------AATGCAT-CTC--------------------------GTAAGCCATATATATGTATATAAATATATATCA---TATCT--------------------------------------------------------------------ATTGTTATTGCTGATCGACTGA
droGri2	scaffold_15126:8057210-8057326 -	ATAT---T-------------TATAATCACT---GTATTGAAAATTTAACACTTAAGTAGTTGATACAA-GGGCGAGTTT------CATA----AAGTATCGCATTGTGTGACCTACTTGAATGAGAGATTTTTA-----AGATA-CTG------------------------------------------------------------------------------------TAAA

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2L:13747594-13747712 -	NA	TGTATCG------GA-----A--TT-----A-----ATTAGAAAT-----------------TATATATTTAAGTAGTGGATACAAAGGGCGATTTGATA--TAA-AAGT-GTCG-CATTGTATGACCTACTTAACTAGCTGATTTTGTATCCCAACAT------AAT------A------G---------------
droSim1	chr2L:13506512-13506649 -	2	TGTCGGA------A---T--AAA-TAT----AAT-----AATAATCGGAAATATTTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATA--TAA-AAGT-ATCG-CATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACAT------AAA------A------T---------------
droSec1	super_3:14439-14576 -	2	TGTCGGA------A---T--AAA-TAT----AAT-----AATAATCGGAAATATTTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATA--TAA-AAGT-ATCG-CATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACAT------AAA------A------T---------------
droYak2	chr2L:10159916-10160031 -	1	TATGCTT-----CGA-----AG-TT-----T-----TAAAAAAAT-----------------TATATATTTAAGTAGTGGATACAAAAGGCGATTGA-TA--TAA-AAAT-GTCG-CATTGTATGGCCTACTTAACTAGCTGATTTTGTATCCCAACTT----------------------A---------------
droEre2	scaffold_4929:11719022-11719139 +	1	TCTATAT------TA-----A--TT-----------GATCAAAAT-----------------TATATATCTAAGTAGTGGATACAAACGGCGATTTGGTA--TAA-AAAT-GTCG-CATTGTATGACCTGCTTAACTAGCTGATTTTGTATCCCAACGT------ACA------A------A---------------
droEug1	scf7180000409452:319606-319729 -	1	TATATAC------AA-----A--TT------AATTTTACAAAAAT-----------------CATATACTTAAGTAGTGGATACAAATTGCGATTTTA----AAA-TATA-CTCG-CATTGTATGGCCTACTTAGTTAGTTGATTTTTAACACC---GT------CAA------GATAAAAG---------------
droBia1	scf7180000302408:2583564-2583692 +	2	TTTAAAA------TA-----T--TT------AGAATTTAGAAAAT-----------------CATTTGTTTAAGTAGTGCATACAAAAGGCGATTTGCTA--TCA-AACG-TTCG-CATTGTATGCCCTACTTAACTAGTTGGTTTTTCTAAGCAACAT------TAA------AATTATTG---------------
droTak1	scf7180000414072:20324-20464 +	3	TGTTTTT------GA-----A--AT-----T-----TCAAAAAAT-----------------CATACATTTAAGTAGTGGATACAAAAGGCGATTTGCTA--ATAAAATG-TTCG-CATTGTATGGCCTACTTAACTAACTGATTTTTTTTAACAACAT------TAA------AATAACTGCTGAATACAAAAGAT
droEle1	scf7180000491338:1356996-1357111 -	2	TATGTTT------TG---------T-----T-----TAAAAAAAT-----------------CATGTATTTAAGTAGTGGATACAAAAGGCGATTTACAA--AATAAATG-TTCG-CATTGTATGCCCTACTTAACTAGCAGGTTTTTCCAAGCAACAA------C--------A------A---------------
droRho1	scf7180000780107:332628-332745 +	2	GTTATAA-------------------------------AAAAAAT-----------------CATATGTTTAAGTAGTGGATACAAATGGCGACTTGCAA--ACGAAATG-TTCG-CATTGTATGTCCTACTTAAGTAGCTGATTTTTCCAAGCGTCAT------TAA------AGTAATTG---------------
droFic1	scf7180000448796:312-430 +	2	TATATTT-----TTA-----AC-AT-----A-----TTAAAAAAT-----------------TATACGTTTAAGTAGTGGATACAAAAGGCGATTTGTAT--AACGAAAG-TTCG-CATTGTATGTCCTACTTAAGTGGCTGATTTTTTCAAGCAACAT------C---------------A---------------
droKik1	scf7180000302236:232151-232252 +	2	CATATCT------GT-----T--AA-----T-----TAAGAAAAT-----------------CGTATGTTTAAGTAGTGGATACAA-CGGCGATTGAACA--CAATAATC-TTCG-CAGTGTGTTACCTACTTAATTAGTCGATTTT--------------------------------------------------
droAna3	scaffold_12943:1815398-1815512 -	2	TCATAAATATCT-GT-----G---------C-----AAACTAAAT-----------------CATGTGTTTAAGTAGGCAATACAT-GGGCGACTAAATA--AAA-TATA-CTCG-CAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATC------------------------C---------------
droBip1	scf7180000396728:1424338-1424445 +	1	CTTCTTA------AT-----A--TA-----C-----AACTTAAAT-----------------CATGTGTTTAAGTAGGCAATACAT-GGGCGATTCATTA--------CA-TTCG-CAATGTATGGCTTACATAACTAGTTGATTTTTGAAGTCATC-----------------C------A---------------
dp4	chr4_group1:1722923-1723028 +	3	CCTCTCA-------------------------------AAATAAT-----------------CGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTA--AAAGAACT-TTCG-CATTGTGTGACCTACTTAAATGCTCGATTGTTTCAAGCAACCT--------------------------------------
droPer1	super_5:3483460-3483570 -	4	CCTCTCA-------------------------------AAATAAT-----------------CGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTA--AAAGAACT-TTCG-CATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCT------CTA------A------A---------------
droWil1	scaffold_180772:545437-545562 +	2	TCATTTG-------A--T--C--TG--GTCA-----TTGAAAAAT-----------------GTTACACTTAAGTAGTTAATACAA-TGGCGATTCGTATTCCAT-TGTACATCG-CATTGTGTGAGTTACTTTGTTGAGAGATTTTTCCAAACAACAA------GAT------A---AT-C---------------
droVir3	scaffold_12723:5043878-5043988 +	1	TGCCCAT------AA-----A--TG-----T-----CTTGAAAAT-----------------TTGTCATTTAAGTAGGTCACACAA--TGCGATGCAAGA--AAA-AA---CTCGCCCTTGTATTAACTACTTAAGCGTTCAATTTTC-ATTGCAGCA----------------A------G---------------
droMoj3	scaffold_6500:16663841-16663957 -	5	CCATTAA------AA-----T--TT------AA----CAACATAT-----------------GATATACATATATACTATTTATTAA----------------AA-AATT-ATTG-TAATAAGAAATTTTTTAATATTATGAATTTTATTTTACTAAATTTATGGCAGAGTTATC------A---------------
droGri2	scaffold_15126:8057211-8057331 -	7	TGTAAAT-ATTT-ATAATCAC--TG-----T-----ATTGAAAAT-----------------TTAACACTTAAGTAGTTGATACAA-GGGCGAGTTTCA---T-A-AAGT-ATCG-CATTGTGTGACCTACTTGAATGAGAGATTTTTA--AGATACTG--------T------A------A---------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TGT----------------------ATCGGAATTA-ATTAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGA-TTT------GATATAA-AAGTGTCGCATTGTATGACCTACTTAACTAGCTGATTTTGTATCC---CAACAT------------------------------------------------------------------------------------AATAG

Size

Hit Count

Total Norm

droSim1

TGTC---GGAATAAATATAATAATAATCGGAAATA-TTTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGA-TTT------GATATAA-AAGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTC---CAACAT------------------------------------------------------------------------------------AAAAT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................................TTAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	3421.00	3281.00	0.00	0.00	140.00
.....................................................................................................GCATTGTATGGCCTACTTAACT..................................................................................................................	22	1	693.00	77.00	0.00	0.00	616.00
....................................................TTAAGTAGTGGATACAAAAAGCGA-................................................................................................................................................................	24	1	548.00	474.00	0.00	0.00	74.00
....................................................................................................CGCATTGTATGGCCTACTTAACT..................................................................................................................	23	1	307.00	10.00	1.00	0.00	296.00
....................................................TTAAGTAGTGGATACAAAAGGCGG-................................................................................................................................................................	24	1	281.00	222.00	0.00	0.00	59.00
....................................................TTAAGTAGTGGATACAAAAGGCG..................................................................................................................................................................	23	1	271.00	236.00	0.00	0.00	35.00
....................................................................................................CGCATTGTATGGCCTACTTAAC...................................................................................................................	22	1	270.00	51.00	0.00	0.00	219.00
....................................................TTAAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	25	1	233.00	216.00	0.00	0.00	17.00
....................................................TTAAGTAGTGGATACAAAAGGCGC-................................................................................................................................................................	24	1	129.00	126.00	0.00	0.00	3.00
....................................................TTAAGTAGTGGATACCAAAGGCGA-................................................................................................................................................................	24	1	109.00	109.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	24	1	95.00	95.00	0.00	0.00	0.00
......................................................................................................CATTGTATGGCCTACTTAACT..................................................................................................................	21	1	81.00	5.00	0.00	0.00	76.00
....................................................TTAAGTAGTGGATACAAAAAGCG..................................................................................................................................................................	23	1	71.00	58.00	0.00	0.00	13.00
....................................................TTAAGTAGTGGATACAAAAGGC...................................................................................................................................................................	22	1	63.00	57.00	0.00	0.00	6.00
....................................................TTAAGTAGTGGATACAAAAGGGGA-................................................................................................................................................................	24	1	55.00	47.00	0.00	0.00	8.00
....................................................TTAAGTAGTGGATAAAAAAGGCGA-................................................................................................................................................................	24	1	45.00	43.00	0.00	0.00	2.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	23	1	41.00	41.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAAGCGA-T...............................................................................................................................................................	25	1	34.00	24.00	0.00	0.00	10.00
....................................................TTAAGTAGTGGATACACAAGGCGA-................................................................................................................................................................	24	1	30.00	30.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAAGC...................................................................................................................................................................	22	1	29.00	24.00	0.00	0.00	5.00
....................................................TTAAGTAGTGGATACAAAAAGCGG-................................................................................................................................................................	24	1	29.00	8.00	0.00	0.00	21.00
....................................................TTAAGTAGTGGATACAAAAAGCGC-................................................................................................................................................................	24	1	23.00	23.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGGCCTACTTAACC..................................................................................................................	22	1	23.00	0.00	0.00	0.00	23.00
....................................................TTAAGTAGTGGATACAAAAGGCGT-................................................................................................................................................................	24	1	21.00	21.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAAGCGA-T...............................................................................................................................................................	24	1	20.00	16.00	0.00	0.00	4.00
....................................................TTAAGTAGTGGATACAAAAGGCGC-T...............................................................................................................................................................	25	1	19.00	19.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAGG....................................................................................................................................................................	21	1	19.00	18.00	0.00	0.00	1.00
....................................................................................................CGCATTGTATGGCCTACTTAACC..................................................................................................................	23	1	18.00	0.00	0.00	0.00	18.00
....................................................TTAAGTAGTGGATACCAAAGGCGC-................................................................................................................................................................	24	1	18.00	18.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGGCCTACTTAAC...................................................................................................................	21	1	17.00	6.00	0.00	0.00	11.00
....................................................TTAAGTACTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	17.00	1.00	0.00	0.00	16.00
....................................................TTAAGTAGTGGATACCAAAAGCGA-................................................................................................................................................................	24	1	15.00	15.00	0.00	0.00	0.00
....................................................TTAAGTxxTGGATACAAAAGGCGA-................................................................................................................................................................	22	1	14.00	0.00	0.00	0.00	14.00
....................................................TTAAGTATTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	13.00	0.00	0.00	0.00	13.00
....................................................TTAAGTAGTGGATACAAAAGGCGG-T...............................................................................................................................................................	25	1	13.00	13.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACCAAAGGCGG-................................................................................................................................................................	24	1	13.00	13.00	0.00	0.00	0.00
....................................................TTAAGGAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	13.00	13.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-TT..............................................................................................................................................................	25	1	12.00	12.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-TA..............................................................................................................................................................	25	1	12.00	12.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAACGCGA-................................................................................................................................................................	24	1	11.00	10.00	0.00	0.00	1.00
....................................................TTAAGTAGTGGATACAAAAGGTGA-................................................................................................................................................................	24	1	11.00	11.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGGGG-................................................................................................................................................................	24	1	11.00	10.00	0.00	0.00	1.00
....................................................TTAAGTAGTGGGTACAAAAGGCGA-................................................................................................................................................................	24	1	10.00	9.00	0.00	0.00	1.00
.....................................................TAAGTAGTGGATACAAAAGGCGG-T...............................................................................................................................................................	24	1	10.00	10.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGAGA-................................................................................................................................................................	24	1	10.00	10.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCCA-................................................................................................................................................................	24	1	9.00	9.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATAAAAAAAGCGA-................................................................................................................................................................	24	1	9.00	7.00	0.00	0.00	2.00
....................................................TTAAGTAGTGGATAAAAAAGGGGA-................................................................................................................................................................	24	1	8.00	7.00	0.00	0.00	1.00
.......................................................................................................ATTGTATGGCCTxCTAAAC...................................................................................................................	18	1	8.00	0.00	0.00	7.00	1.00
.....................................................TAAGTAGTGGATACAAAAGGC...................................................................................................................................................................	21	1	8.00	8.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGCGG-................................................................................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00
..................................................................................................ATCGCATTGTATGGCCTACTTAACT..................................................................................................................	25	1	8.00	1.00	0.00	0.00	7.00
.....................................................TAAGTAGTGGATACCAAAGGCGA-T...............................................................................................................................................................	24	1	8.00	8.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGGCCTACTTAACG..................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................GCATTGTATGGCCTACTTAACTT.................................................................................................................	23	1	8.00	0.00	0.00	0.00	8.00
....................................................TTAAGTAGTGGATAAAAAAGGCGG-................................................................................................................................................................	24	1	7.00	1.00	0.00	0.00	6.00
..................................................................................................ATCGCATTGTATGGCCTACTT......................................................................................................................	21	1	7.00	0.00	0.00	0.00	7.00
....................................................TTAAGTAGTGGATACAAAATGCGA-................................................................................................................................................................	24	1	7.00	7.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATAAAAAAGGCG..................................................................................................................................................................	23	1	7.00	3.00	0.00	0.00	4.00
....................................................TTAAGTAGTGGATACCAAAGGCGA-T...............................................................................................................................................................	25	1	7.00	7.00	0.00	0.00	0.00
....................................................TTAAGTAGTCGATACAAAAGGCGA-................................................................................................................................................................	24	1	7.00	2.00	0.00	0.00	5.00
....................................................TTAAGTAGTGGATATAAAAGGCGA-................................................................................................................................................................	24	1	6.00	5.00	0.00	0.00	1.00
....................................................TTAAGTAGCGGATACAAAAGGCGA-................................................................................................................................................................	24	1	6.00	5.00	0.00	0.00	1.00
....................................................TTAAGTAGTGGATACACAAGGCGG-................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACGAAAGGCGA-................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
....................................................TTAAGTAGAGGATACAAAAGGCGA-................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAACAGGCGA-................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAAGGGA-................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
....................................................TTAAGGAGTGGATACAAAAGGCGG-................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
....................................................TTAAGCAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	6.00	5.00	0.00	0.00	1.00
....................................................TTAAGTAGTGGATACTAAAGGCGT-................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAAGCCA-................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGGG..................................................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
.................................................................................................TATCGCATTGTATGGCCTACTTAACT..................................................................................................................	26	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................ATCGCATTGTATGGCCTACTTAAC...................................................................................................................	24	1	5.00	2.00	0.00	0.00	3.00
....................................................TTAAGAAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACACAAGGCGC-................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAAG....................................................................................................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
......................................................................................................CATTGTATGGCCTACTTAACTT.................................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
....................................................TTAAGTAGTGGATACAAAAAGTGA-................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACCAAAGGC...................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGGGG-T...............................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
....................................................................................................CGCATTGTATGGCCTACT.......................................................................................................................	18	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTAGTGGATACAAAAG.....................................................................................................................................................................	20	1	4.00	3.00	0.00	0.00	1.00
.....................................................TAAGTAGTGGATACAAAAGGCG..................................................................................................................................................................	22	1	4.00	3.00	0.00	0.00	1.00
....................................................TTAAGTAGTTGATACAAAAGGCGA-................................................................................................................................................................	24	1	4.00	1.00	0.00	0.00	3.00
....................................................TTAAGTAGTGGATGCAAAAGGCGA-................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAACGGCGA-................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACCAAAGGCGT-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
....................................................................................................CGCATTGTATGGCCTACTT......................................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00
....................................................TTAGGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	3.00	2.00	0.00	0.00	1.00
..................................................................................................ATCGCATTGTATGGCCTACT.......................................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
....................................................TTAAGTAGTGGATAAAAAAGGCGA-T...............................................................................................................................................................	25	1	3.00	3.00	0.00	0.00	0.00
....................................................TTAAGTAGTGTATACAAAAGGCGA-................................................................................................................................................................	24	1	3.00	0.00	0.00	0.00	3.00
.....................................................TAAGTAGTGGATACAAAAGGGGA-T...............................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAAGC...................................................................................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATAAAAAAGGCGC-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
....................................................TTAAGTAxTGGATACAAAAGGCGA-................................................................................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
....................................................TTAAGTAGTGGATACAACAGGCGC-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCGA-A...............................................................................................................................................................	25	1	3.00	3.00	0.00	0.00	0.00
....................................................TTAAGTGGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	3.00	2.00	0.00	0.00	1.00

droSec1

TGTC---GGAATAAATATAATAATAATCGGAAATA-TTTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGA-TTT------GATATAA-AAGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTC---CAACAT------------------------------------------------------------------------------------AAAAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................................TTAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	28997.00	2.00	28926.00	69.00
....................................................TTAAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	25	1	2699.00	0.00	2692.00	7.00
....................................................TTAAGTAGTGGATACAAAAGGCG..................................................................................................................................................................	23	1	2191.00	0.00	2183.00	8.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	24	1	1993.00	0.00	1989.00	4.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	23	1	446.00	0.00	445.00	1.00
....................................................TTAAGTAGTGGATACAAAAGGC...................................................................................................................................................................	22	1	370.00	0.00	368.00	2.00
....................................................TTAAGTAGTGGATACAAAAGG....................................................................................................................................................................	21	1	245.00	0.00	244.00	1.00
....................................................TTAAGTAGTGGATACAAAAGGTGA-................................................................................................................................................................	24	1	226.00	0.00	225.00	1.00
....................................................TTAAGTAGTGGATACxAAAGGCGA-................................................................................................................................................................	23	1	158.00	0.00	158.00	0.00
....................................................TTAAGTAGTGGATATAAAAGGCGA-................................................................................................................................................................	24	1	104.00	0.00	104.00	0.00
....................................................TTAAGTAGTGGATACxxAAGGCGA-................................................................................................................................................................	22	1	101.00	0.00	101.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGCG..................................................................................................................................................................	22	1	99.00	0.00	98.00	1.00
....................................................TTAAGTAGTGGATACAAAAGGCGA-A...............................................................................................................................................................	25	1	96.00	0.00	96.00	0.00
....................................................TTAAGTAGTGGATAAAAAAGGCGA-................................................................................................................................................................	24	1	93.00	0.00	93.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGGGA-................................................................................................................................................................	24	1	87.00	0.00	86.00	1.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-TT..............................................................................................................................................................	25	1	83.00	0.00	83.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCGG-................................................................................................................................................................	24	1	78.00	0.00	78.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCGA-TT..............................................................................................................................................................	26	1	74.00	0.00	74.00	0.00
....................................................TTAAGTAGTGGATACAAAGGGCGA-................................................................................................................................................................	24	1	71.00	0.00	71.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-TA..............................................................................................................................................................	25	1	63.00	0.00	63.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGC...................................................................................................................................................................	21	1	62.00	0.00	61.00	1.00
....................................................TTAAGTAGTGGATACAAAAGGCGC-................................................................................................................................................................	24	1	51.00	0.00	51.00	0.00
....................................................TTAAGTAGTGGGTACAAAAGGCGA-................................................................................................................................................................	24	1	45.00	0.00	45.00	0.00
....................................................TTAAGTAGTGGATACACAAGGCGA-................................................................................................................................................................	24	1	41.00	0.00	41.00	0.00
....................................................TTAAGAAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	40.00	0.00	40.00	0.00
....................................................TTAAGTAGTxGATACAAAAGGCGA-................................................................................................................................................................	23	1	38.00	0.00	38.00	0.00
....................................................TTAAGTAGTGGATACAAGAGGCGA-................................................................................................................................................................	24	1	37.00	0.00	37.00	0.00
....................................................TTAGGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	36.00	0.00	36.00	0.00
....................................................TTAAGTAGTGGATACAAATGGCGA-................................................................................................................................................................	24	1	36.00	0.00	36.00	0.00
....................................................TTAAGTAGTGGATACCAAAGGCGA-................................................................................................................................................................	24	1	33.00	0.00	33.00	0.00
....................................................TTAAGTAGTGGATACAGAAGGCGA-................................................................................................................................................................	24	1	33.00	0.00	33.00	0.00
.....................................................................................................GCATTGTATGGCCTACTTAACT..................................................................................................................	22	1	31.00	0.00	31.00	0.00
....................................................TTAAGTGGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	31.00	0.00	31.00	0.00
....................................................TTAAGTAGTGTATACAAAAGGCGA-................................................................................................................................................................	24	1	30.00	0.00	30.00	0.00
......................................................AAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	22	1	30.00	0.00	30.00	0.00
....................................................TTAAGTAGTCGATACAAAAGGCGA-................................................................................................................................................................	24	1	30.00	0.00	30.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCGA-TA..............................................................................................................................................................	26	1	29.00	0.00	29.00	0.00
....................................................TTAAGTAGTGGATGCAAAAGGCGA-................................................................................................................................................................	24	1	29.00	0.00	29.00	0.00
....................................................TTAAGCAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	29.00	0.00	29.00	0.00
....................................................TTAAGTAGTGGACACAAAAGGCGA-................................................................................................................................................................	24	1	28.00	0.00	28.00	0.00
....................................................CTAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	27.00	0.00	27.00	0.00
....................................................TTAAGTAGTGGATACGAAAGGCGA-................................................................................................................................................................	24	1	26.00	0.00	26.00	0.00
...................................................CTTAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	25	1	26.00	0.00	26.00	0.00
....................................................TTAAGTAGCGGATACAAAAGGCGA-................................................................................................................................................................	24	1	25.00	0.00	25.00	0.00
....................................................TTAAGTACTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	25.00	0.00	25.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCGT-................................................................................................................................................................	24	1	24.00	0.00	24.00	0.00
....................................................TTAAGTATTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	23.00	0.00	23.00	0.00
....................................................TTAAGTAGAGGATACAAAAGGCGA-................................................................................................................................................................	24	1	22.00	0.00	22.00	0.00
....................................................TTAACTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	22.00	0.00	22.00	0.00
....................................................TTAAGTAGTGGATACAAAA......................................................................................................................................................................	19	1	22.00	0.00	22.00	0.00
....................................................TTGAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	21.00	0.00	21.00	0.00
....................................................TTAAGTAGTGGATACAAAAGCCGA-................................................................................................................................................................	24	1	21.00	0.00	21.00	0.00
....................................................TTAAGTTGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	20.00	0.00	20.00	0.00
....................................................TTAAGTAGTGGATACAAAAG.....................................................................................................................................................................	20	1	20.00	0.00	20.00	0.00
....................................................TTAAGTAGTGGATACAAAAGTCGA-................................................................................................................................................................	24	1	19.00	0.00	19.00	0.00
....................................................TTAAGTAGTGGATACAAAACGCGA-................................................................................................................................................................	24	1	18.00	0.00	18.00	0.00
....................................................TTAAGTAGTAGATACAAAAGGCGA-................................................................................................................................................................	24	1	18.00	0.00	18.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCAA-................................................................................................................................................................	24	1	18.00	0.00	18.00	0.00
....................................................TTAAGTAGTGGATACAAAAAGCGA-................................................................................................................................................................	24	1	17.00	0.00	17.00	0.00
....................................................TTATGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	17.00	0.00	17.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCA..................................................................................................................................................................	23	1	17.00	0.00	17.00	0.00
....................................................TTAAGTxxTGGATACAAAAGGCGA-................................................................................................................................................................	22	1	16.00	0.00	16.00	0.00
.....................................................TAAGTAGTGGATACxAAAGGCGA-T...............................................................................................................................................................	23	1	15.00	0.00	15.00	0.00
....................................................TTAAGTAGTGGTTACAAAAGGCGA-................................................................................................................................................................	24	1	15.00	0.00	15.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCCA-................................................................................................................................................................	24	1	15.00	0.00	15.00	0.00
......................................................AAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	23	1	15.00	0.00	15.00	0.00
....................................................TTAAGTAGTGGATACxAAAGGCG..................................................................................................................................................................	22	1	15.00	0.00	15.00	0.00
....................................................TTAAGTAGTTGATACAAAAGGCGA-................................................................................................................................................................	24	1	15.00	0.00	15.00	0.00
....................................................TTAAGTAGTGAATACAAAAGGCGA-................................................................................................................................................................	24	1	14.00	0.00	14.00	0.00
....................................................TTAAGTAGTGGATACxxAAGGCGA-T...............................................................................................................................................................	23	1	14.00	0.00	14.00	0.00
....................................................TTAAGTAGTGGATACAAAAGACGA-................................................................................................................................................................	24	1	14.00	0.00	13.00	1.00
....................................................TTAAGTAGTGGATACAAAAGGCTA-................................................................................................................................................................	24	1	14.00	0.00	14.00	0.00
....................................................TTAAGTAGTGGATACAAAATGCGA-................................................................................................................................................................	24	1	13.00	0.00	13.00	0.00
....................................................TTAAGTAGTGGATATAAAAGGCGA-T...............................................................................................................................................................	25	1	13.00	0.00	13.00	0.00
....................................................TTAAGTAGTGCATACAAAAGGCGA-................................................................................................................................................................	24	1	13.00	0.00	13.00	0.00
....................................................TTAAGTAGTGGATACAATAGGCGA-................................................................................................................................................................	24	1	13.00	0.00	13.00	0.00
....................................................TTAAGTAGTxxATACAAAAGGCGA-................................................................................................................................................................	22	1	13.00	0.00	13.00	0.00
....................................................TTAAGTAATGGATACAAAAGGCGA-................................................................................................................................................................	24	1	12.00	0.00	12.00	0.00
....................................................TCAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	12.00	0.00	12.00	0.00
....................................................TTAAGTAGTGGATACAAA.......................................................................................................................................................................	18	1	12.00	0.00	12.00	0.00
....................................................TTTAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	12.00	0.00	12.00	0.00
....................................................TTAAGTAGTGGATACxAAAGGCGA-T...............................................................................................................................................................	24	1	11.00	0.00	11.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCGA-C...............................................................................................................................................................	25	1	11.00	0.00	11.00	0.00
....................................................TTAATTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	11.00	0.00	11.00	0.00
....................................................................................................CGCATTGTATGGCCTACTTAAC...................................................................................................................	22	1	11.00	0.00	11.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGAGA-................................................................................................................................................................	24	1	11.00	0.00	11.00	0.00
..........................................................AGTGGATACAAAAGGCGA-................................................................................................................................................................	18	1	10.00	0.00	10.00	0.00
.....................................................TAAGTAGTGGATATAAAAGGCGA-T...............................................................................................................................................................	24	1	10.00	0.00	10.00	0.00
.....................................................TAAGTAGTGGATACxxAAGGCGA-T...............................................................................................................................................................	22	1	10.00	0.00	10.00	0.00
....................................................TTAAGTAGTGGATACAAGAGGCG..................................................................................................................................................................	23	1	10.00	0.00	10.00	0.00
....................................................TTAAGTAGTGGAAACAAAAGGCGA-................................................................................................................................................................	24	1	10.00	0.00	10.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGGGA-T...............................................................................................................................................................	25	1	10.00	0.00	9.00	1.00
....................................................CTAAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	25	1	9.00	0.00	9.00	0.00
....................................................TTAAGTAGTGGATACAAAGGGCG..................................................................................................................................................................	23	1	9.00	0.00	9.00	0.00
...................................................TTTAAGTAGTGGATACAAAAGGCG..................................................................................................................................................................	24	1	9.00	0.00	9.00	0.00
....................................................TTAAGTAGTGGATCCAAAAGGCGA-................................................................................................................................................................	24	1	8.00	0.00	8.00	0.00
....................................................TTAAGTAGTGGATAAAAAAGGCG..................................................................................................................................................................	23	1	8.00	0.00	8.00	0.00
....................................................TTAAGTAGTGGATACAAAAxGCGA-................................................................................................................................................................	23	1	8.00	0.00	8.00	0.00
.....................................................TAAGTAGTGGATACAAAAGG....................................................................................................................................................................	20	1	8.00	0.00	8.00	0.00
....................................................TTAAGTAGTGGATACAAACGGCGA-................................................................................................................................................................	24	1	8.00	0.00	8.00	0.00

droYak2

TATG---C-----------------TTCGAAGTTT-TtttttttTTtTtTtTTTttGTAGTGGATACAAAAGGCGA-TT-------GATATAA-AAATGTCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATCC---CAACTT------------------------------------------------------------------------------------A--CA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
....................................................TTAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	2424.00	2417.00	2.00	0.00	5.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGCG..................................................................................................................................................................	23	1	128.00	127.00	0.00	0.00	1.00	0.00
.....................................................................................................GCATTGTATGGCCTACTTAACT..................................................................................................................	22	1	60.00	59.00	0.00	0.00	0.00	1.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	23	1	44.00	44.00	0.00	0.00	0.00	0.00
....................................................TTAAGTAGTGGATACAAAAGG....................................................................................................................................................................	21	1	16.00	16.00	0.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	24	1	14.00	13.00	0.00	0.00	1.00	0.00
....................................................TTAAGTAGTGGATACAAAAGGC...................................................................................................................................................................	22	1	13.00	13.00	0.00	0.00	0.00	0.00
...............................................................................................AATxTTGCATTGTATGGCC...........................................................................................................................	18	1	12.00	0.00	0.00	0.00	0.00	12.00
.....................................................TAAGTAGTGGATACAAAAGGCG..................................................................................................................................................................	22	1	9.00	9.00	0.00	0.00	0.00	0.00
.....................................TTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................	21	40	0.20	0.00	0.00	0.00	0.00	0.20
..................................T-TTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................	21	40	0.20	0.00	0.00	0.00	0.00	0.20
.................................TT-TTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................	21	40	0.20	0.00	0.00	0.00	0.00	0.20
................................TTT-TTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................	21	40	0.20	0.00	0.00	0.00	0.00	0.20
...............................TTTT-TTTTTTTTTTTTTTTTT........................................................................................................................................................................................	21	40	0.20	0.00	0.00	0.00	0.00	0.20
....................................TTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................	21	40	0.20	0.00	0.00	0.00	0.00	0.20
..................................T-TTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................	22	33	0.21	0.00	0.00	0.00	0.00	0.21
....................................TTTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................	22	33	0.21	0.00	0.00	0.00	0.00	0.21
...............................TTTT-TTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................	22	33	0.21	0.00	0.00	0.00	0.00	0.21
.................................TT-TTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................	22	33	0.21	0.00	0.00	0.00	0.00	0.21
................................TTT-TTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................	22	33	0.21	0.00	0.00	0.00	0.00	0.21
......................................TTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................	20	46	0.13	0.00	0.00	0.00	0.00	0.13
...............................TTTT-TTTTTTTTTTTTTTTT.........................................................................................................................................................................................	20	46	0.13	0.00	0.00	0.00	0.00	0.13
.................................TT-TTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................	20	46	0.13	0.00	0.00	0.00	0.00	0.13
..................................T-TTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................	20	46	0.13	0.00	0.00	0.00	0.00	0.13
................................TTT-TTTTTTTTTTTTTTTTT........................................................................................................................................................................................	20	46	0.13	0.00	0.00	0.00	0.00	0.13
....................................................TTAAGTAGTGGATACAAAAGGCGA-T...............................................................................................................................................................	25	1	6.00	6.00	0.00	0.00	0.00	0.00
.....................................TTTTTTTTTTTTTTTTTT......................................................................................................................................................................................	18	56	0.11	0.02	0.00	0.00	0.00	0.09
.....................................TTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................	20	46	0.13	0.00	0.00	0.00	0.00	0.13
....................................TTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................	20	46	0.13	0.00	0.00	0.00	0.00	0.13
.....................................TTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
...............................TTTT-TTTTTTTTTTTTTTT..........................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
..................................T-TTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
....................................TTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
......................................TTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
................................TTT-TTTTTTTTTTTTTTTT.........................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
.................................TT-TTTTTTTTTTTTTTTTT........................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
.......................................TTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................	19	51	0.10	0.04	0.00	0.00	0.00	0.06
......................................TTTGTTTTTTTTTTATTTGT...................................................................................................................................................................................	20	4	0.75	0.00	0.00	0.75	0.00	0.00
....................................................TTAGGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................TTGAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................TTTGTTTTTTTTTTTATTTGT...................................................................................................................................................................................	21	4	0.75	0.25	0.00	0.50	0.00	0.00
.................................TT-TTTTGTTTTTTTTTTTTTTT.....................................................................................................................................................................................	22	6	0.33	0.00	0.00	0.00	0.00	0.33
................................TTT-TTTGTTTTTTTTTTTTTTT......................................................................................................................................................................................	22	6	0.33	0.00	0.00	0.00	0.00	0.33
.....................................................................................................GCATTGTATGGxCTTCTTAAC...................................................................................................................	20	1	2.00	1.00	0.00	0.00	1.00	0.00
......................................................................................................CATTGTATGGCCTACTTAACT..................................................................................................................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGGCCTACTTAGCT..................................................................................................................	22	1	2.00	2.00	0.00	0.00	0.00	0.00
..........................................................AGTGGATACAAAAGGCGA-................................................................................................................................................................	18	1	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAAAGGC...................................................................................................................................................................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
.................................................................................................TGTCGCATTGTATGGCCTACTTAACT..................................................................................................................	26	1	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................................................GCATTGAATGGCCTACTTGA....................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................................CGCATTGTATGGCCTACTTAAC...................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................................AATGTCGCATTGTATTGCCTACTTAACT..................................................................................................................	28	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGGCCTTCTTAAC...................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGACCCACTTAACT..................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................TTGTTTTTTTTTTTTTGTA..................................................................................................................................................................................	19	6	0.17	0.00	0.00	0.17	0.00	0.00
................................TAT-TTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................	23	34	0.03	0.00	0.00	0.00	0.00	0.03
.....................................................................................................GCATTGTATGGCCTACTTAAC...................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGGCCTACTTAAAT..................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..............................TATTT-TTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................	23	34	0.03	0.00	0.00	0.00	0.00	0.03
......................................................AAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................TCGCATTGTATGGCCTACTTAA....................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................TTATGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................TTAAGTAGTGGATACAAAAG.....................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................................GCATTGTCTGGCCTACTTCACT..................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................................AATGTxGCATTGTATGGCTT..........................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................GTAGTGGATACAAAAGGCGA-................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................TATTTT-TTTTTTTTTTTTTTTTT........................................................................................................................................................................................	23	34	0.03	0.00	0.00	0.00	0.00	0.03
..................................T-ATTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................	23	34	0.03	0.00	0.00	0.00	0.00	0.03
....................................................................................................CGCATTGTATGGCCTACTTAACT..................................................................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................TTTTTTTTGCTTTTTTTTGT...................................................................................................................................................................................	20	5	0.20	0.00	0.00	0.20	0.00	0.00
....................................................TTCAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................TA-TTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................	23	34	0.03	0.00	0.00	0.00	0.00	0.03
..............................TGTTT-TTTTTTTTTTTTTGTTTTTT.....................................................................................................................................................................................	25	4	0.25	0.25	0.00	0.00	0.00	0.00
...............................TATT-TTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................	23	34	0.03	0.00	0.00	0.00	0.00	0.03
..................................T-CTTTTTTTTTTTTTCTTTTTG....................................................................................................................................................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
...............................................................................................AATxTTGCATTGTATGGCCT..........................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................................AATxTTGCATTGTATGGC............................................................................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00

droEre2

TTG----------------------ATC------------AAAATTATATATCTAAGTAGTGGATACAAACGGCGA-TTT------GGTATAA-AAATGTCGCATTGTATGACCTGCTTAACTAGCTGATTTTGTATCC---CAACGT------------------------------------------------------------------------------------ACAAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................CTAAGTAGTGGATACAAACGGCGA-................................................................................................................................................................	24	1	236.00	235.00	0.00	0.00	1.00
....................................................CTAAGTAGTGGATACAAACGGCG..................................................................................................................................................................	23	1	49.00	49.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACCGCGA-................................................................................................................................................................	24	1	41.00	41.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGCGG-................................................................................................................................................................	24	1	27.00	27.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGC...................................................................................................................................................................	22	1	21.00	20.00	0.00	0.00	1.00
....................................................CTAAGTAGTGGATACAAACCGCG..................................................................................................................................................................	23	1	14.00	14.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACCGCCA-................................................................................................................................................................	24	1	13.00	13.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAAAGGCGA-................................................................................................................................................................	24	1	12.00	12.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGACCTGCTTAACT..................................................................................................................	22	1	12.00	12.00	0.00	0.00	0.00
.....................................................TAAGTAGTGGATACAAACGGCGA-T...............................................................................................................................................................	24	1	10.00	10.00	0.00	0.00	0.00
......................................................................................................CATTGTATGACCTGCTTAACT..................................................................................................................	21	1	9.00	9.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGCCA-................................................................................................................................................................	24	1	8.00	8.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACCGC...................................................................................................................................................................	22	1	8.00	8.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACCGCGA-C...............................................................................................................................................................	25	1	7.00	7.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGCGC-................................................................................................................................................................	24	1	6.00	6.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACAGCGA-................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACCGCGC-................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACCAACGGCGA-................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACCGCC..................................................................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACCAACCGCGA-................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGCGA-C...............................................................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGGGG-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAAACGCGA-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGGGA-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
....................................................CTAAGGAGTGGATACAAACGGCGG-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAACGGCGA-T...............................................................................................................................................................	25	1	3.00	3.00	0.00	0.00	0.00
....................................................CTAAGTAGTGGATACAAAAGGCGG-................................................................................................................................................................	24	1	3.00	3.00	0.00	0.00	0.00

droAna3

AGTT---TTCATAAAT---------ATCTGTGCAA-AC--TAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGA-CTA------AATAAAA-TATACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTG---CAAGCATC-----------------------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................................TTAAGTAGGCAATACAT-GGGCGA-................................................................................................................................................................	23	1	1038.00	7.00	24.00	5.00	1002.00
....................................................TTAAGTAGGCAATACAT-GGG....................................................................................................................................................................	20	1	180.00	0.00	3.00	0.00	177.00
....................................................TTAAGTAGGCAATACAT-GGGC...................................................................................................................................................................	21	1	70.00	2.00	1.00	0.00	67.00
....................................................TTAAGTAGGCAATACAT-GGGCG..................................................................................................................................................................	22	1	61.00	2.00	2.00	0.00	57.00
....................................................TTAAGTAGGCAATACAT-GG.....................................................................................................................................................................	19	1	18.00	0.00	0.00	0.00	18.00
....................................................TTAAGTAGGCAATACAT-TGGCGA-................................................................................................................................................................	23	1	17.00	0.00	0.00	0.00	17.00
.....................................................TAAGTAGGCAATACAT-GGGCGA-................................................................................................................................................................	22	1	16.00	0.00	0.00	0.00	16.00
....................................................TTAAGTAGGCAATACAT-GTGCGA-................................................................................................................................................................	23	1	15.00	0.00	1.00	0.00	14.00
....................................................TTAAGTAGGCAATACAT-GGGCTA-................................................................................................................................................................	23	1	14.00	0.00	1.00	0.00	13.00
....................................................TTAAGGAGGCAATACAT-GGGCGA-................................................................................................................................................................	23	1	13.00	0.00	0.00	0.00	13.00
....................................................TTAAGCAGGCAATACAT-GGGCGA-................................................................................................................................................................	23	1	10.00	0.00	0.00	1.00	9.00
....................................................TTAAGTAGGCAATACAT-GGGCGG-................................................................................................................................................................	23	1	9.00	0.00	0.00	0.00	9.00
....................................................TTAAGTAGGCAATACAT-GGGCGC-................................................................................................................................................................	23	1	9.00	0.00	0.00	0.00	9.00
....................................................TTAAGTATGCAATACAT-GGGCGA-................................................................................................................................................................	23	1	9.00	0.00	0.00	0.00	9.00
....................................................TTAAGTAGGCAATACAT-GTG....................................................................................................................................................................	20	1	8.00	0.00	0.00	0.00	8.00
....................................................TTAAGTAGTCAATACAT-GGGCGA-................................................................................................................................................................	23	1	6.00	0.00	0.00	0.00	6.00
....................................................TTAAGTAGGCAATACCT-GGG....................................................................................................................................................................	20	1	6.00	0.00	0.00	0.00	6.00
....................................................TTAAGTAGGCAATACAT-TGGC...................................................................................................................................................................	21	1	5.00	0.00	0.00	0.00	5.00
....................................................TTAAGTAGGCAATACCT-GGGCGA-................................................................................................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................GCAATGTATAGCCTACATAACT..................................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
....................................................TTAAGTAGGCAATACAT-GGTCGA-................................................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTAGGCAATACAT-GGGAGA-................................................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTAGGCAATACAC-GGGCGA-................................................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTACGCAATACAT-CGGCGA-................................................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGGAGGCAATACAT-GGG....................................................................................................................................................................	20	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTAGGCAATACAT-AGGCGA-................................................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTAGGCAATACAT-CGGCGA-................................................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................................TTTAAGTAGGCAATACAT-GGGCGA-................................................................................................................................................................	24	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTAGGCAATACAT-GGGCCA-................................................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................TTAAGTATGCAATACAT-GGG....................................................................................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
....................................................TTAAGTAGGCAATACAT-GGGCGT-................................................................................................................................................................	23	1	3.00	1.00	0.00	0.00	2.00
....................................................TTAAGTAGGCACTACAT-GGGCGA-................................................................................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
....................................................TTAAGTAGGCAATACAT-GCGCGA-................................................................................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
....................................................TTAAGTAGGCAATACAT-G......................................................................................................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
......................................................AAGTAGGCAATACAT-GGGCGA-................................................................................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
....................................................TTAAGTACGCAATACAT-GGGCGA-................................................................................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00

dp4

A----------------------------------------------------------GTTGATACAA-GGGCGA-TAA------TGTAAAAGAACTTTCGCATTGTGTGACCTACTTAAATGCTCGATTGTTT---CAAGCAACCTCTAAAATCTACCTGGAGTAGCCCCAAAGTGACAAGTTATATGGTTTATTTTTAGAAGTGTGTAGCCCTTTAGGACTGCTGATTCAAT--	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................................................................................................GCATTGTGTGACCTACTTAAAT..................................................................................................................	22	1	190.00	0.00	189.00	1.00	0.00
....................................................................................................CGCATTGTGTGACCTACTTAAA...................................................................................................................	22	1	37.00	0.00	37.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGCTACTTAAAT..................................................................................................................	22	1	18.00	0.00	18.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTAAA...................................................................................................................	21	1	18.00	0.00	18.00	0.00	0.00
...................................................................................................TCGCATTGTGTGACCTACTTAAA...................................................................................................................	23	1	12.00	0.00	12.00	0.00	0.00
..................................................................................................TTCGCATTGTGTGACCTACTTA.....................................................................................................................	22	1	10.00	0.00	10.00	0.00	0.00
..................................................................................................TTCGCATTGTGTGACCTACTTAAA...................................................................................................................	24	1	7.00	0.00	7.00	0.00	0.00
...................................................................................................TCGCATTGTGTGACCTACTTAA....................................................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
....................................................................................................CGCATTGTGTGACCTACTTAA....................................................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
......................................................................................................CATTGTGTGACCTACTTAAATG.................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................GCATTGTGTGACATACTTAAAT..................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTAA....................................................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................GAATTGTGTGACCTACTTAAAT..................................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTATAT..................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
.....................................................................................................GCATTGTGTGAACTACTTAAAT..................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
.....................................................................................................GCATTGGGTGACCTACTTAAAT..................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
.......................................................................................................ATTGTGTGACCTACTTAAAT..................................................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
.....................................................................................................GCATTCTGTGACCTACTTAAAT..................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTAGAT..................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
..................................................................................................TTCGCATTGTGTGACCTACTTAA....................................................................................................................	23	1	2.00	0.00	2.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTGCTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGATCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................CGCATTGTGTGACCAACTTAAA...................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGCCCTACTTAA....................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................CCATTGTGTGCCCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................TTCGCATTGTGTGACCTACTTCCAT..................................................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGCCCTAATTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................TAGCATTGTGTGACCTACTTAAA...................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGCTACTTAAATC.................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................ACATTGTGTGACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................CGCAGTGTGTGACCTACTTAAA...................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATCGTGTGACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................TCGCATTGTGTGACCTACTTAGA...................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTTACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTCCTTAAATA.................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTTCTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGCTACTTAAA...................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTCTGTGACCTTCTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGCTACTTATAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................TGCATTGTGTGACCTACTGAAA...................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GTATTGTGTGACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGCTACTTAA....................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTAAGT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGCGTGACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTAATTATAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGAGACATACTTAAA...................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCACTGTGTGACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGCGACCTACTTACAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTCCTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................TCGCATTGTGTGACCTAGTTAAA...................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTAATTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GAATTGTGTGACCTACTTCAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................CATTGTGTGAGCTACTTAAATG.................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................CATTGTGTGACCTACTTAAAT..................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................CGCATTGTGTGACCTAATTAAA...................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGAACTACTTTAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTTAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................CGCATTGTGTGACCTACTTGA....................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTGCTGAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTAACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTACAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTAAATG.................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................TCGCATTGTCGGACCTACTTAA....................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGCTATTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................CATTGTGTGAGCTACTTAAATT.................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00

droPer1

A----------------------------------------------------------GTTGATACAA-GGGCGA-TAA------TGTAAAAGAACTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTT---CAAGCAACCTCTAAAATCTACCTGGAGTAGCCCCAAATTGACAAGTTATATGGTTTATTTTTAGAAGTGTGTATCCCTTTAGGAATGCTGATTCAAT--	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................GCATTGTGTGACCTACTTAAAT..................................................................................................................	22	1	94.00	0.00	63.00	0.00	0.00	31.00
.....................................................................................................GCATTGTGTGACCTACTTAAA...................................................................................................................	21	1	5.00	0.00	3.00	0.00	0.00	2.00
.............................................................................TAA------TGTAAAAGAACTTTC........................................................................................................................................	18	1	4.00	0.00	0.00	0.00	0.00	4.00
...................................................................................................TCGCATTGTGTGACCTACTTAAA...................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
......................................................................................................CATTGTGTGACCTACTTAAATG.................................................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
..................................................................................................TTCGCATTGTGTGACCTACTTAAA...................................................................................................................	24	1	2.00	0.00	2.00	0.00	0.00	0.00
..................................................................................................TTCGCATTGTGTGACCTACTTA.....................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00	0.00
.....................................................................................................GCATTGTGTGACCTACTTCAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................................GCATTGTATGACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................................................................................................ATTGTGTGACCTACTTAAAT..................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................TAA------TGAAAAAGAAATTTC........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................................................GCATTGTGTGGCCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................................................TCGCATTCTCTGACCTACTTAAA...................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................................TCATTGTGTGACTTACTTAAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................................................................................................................................................................ATATGGTTTATTGTTATA..................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................TTCGCATTGTGTGACCTACTTAA....................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................................GCATGGTGTGACCTACTTGAAT..................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
......................................................................................................CATTGTGTGACCTACTTAAAT..................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................................GCATTGTGGGGCCTACTTAAA...................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................................GCATTGTGGGACCTACTTAAAT..................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................................................TCGCATTGTGTAACCTACTTAA....................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00

droWil1

TGTTCATT---------------TGATCTGG-TCA-TTGAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGA-TTCGTATTCCAT---T-GTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTTTC---CAAACAAC-----------------------------------------------------------------------------------------AA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................TTAAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	24858.00	0.00	24838.00	20.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCG..................................................................................................................................................................	22	1	1799.00	0.00	1798.00	1.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCGA-T...............................................................................................................................................................	24	1	755.00	0.00	754.00	1.00	0.00
.....................................................TAAGTAGTTAATACAA-TGGCGA-T...............................................................................................................................................................	23	1	586.00	0.00	586.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGTTACTTTGTT..................................................................................................................	22	1	96.00	0.00	96.00	0.00	0.00
.....................................................TAAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	22	1	79.00	0.00	79.00	0.00	0.00
...................................................CTTAAGTAGTTAATACAA-TGGCG..................................................................................................................................................................	23	1	64.00	0.00	64.00	0.00	0.00
....................................................TTAAGCAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	58.00	0.00	58.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TTGCGA-................................................................................................................................................................	23	1	43.00	0.00	43.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGTCGA-................................................................................................................................................................	23	1	37.00	0.00	37.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGAGA-................................................................................................................................................................	23	1	37.00	0.00	37.00	0.00	0.00
...................................................CTTAAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	24	1	35.00	0.00	35.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCTA-................................................................................................................................................................	23	1	35.00	0.00	35.00	0.00	0.00
....................................................TTAATTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	31.00	0.00	31.00	0.00	0.00
....................................................TTAAGTATTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	29.00	0.00	29.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCGA-A...............................................................................................................................................................	24	1	28.00	0.00	28.00	0.00	0.00
....................................................TTAAGTAGTCAATACAA-TGGCGA-................................................................................................................................................................	23	1	24.00	0.00	24.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-CGGCGA-................................................................................................................................................................	23	1	24.00	0.00	24.00	0.00	0.00
....................................................TTAAGTAGTTAATACGA-TGGCGA-................................................................................................................................................................	23	1	23.00	0.00	23.00	0.00	0.00
....................................................TTAAGTAGCTAATACAA-TGGCGA-................................................................................................................................................................	23	1	22.00	0.00	22.00	0.00	0.00
....................................................TTAAGGAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	22.00	0.00	22.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGTGA-................................................................................................................................................................	23	1	22.00	0.00	22.00	0.00	0.00
....................................................TTAAGTAGTTAATGCAA-TGGCGA-................................................................................................................................................................	23	1	20.00	0.00	20.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TAGCGA-................................................................................................................................................................	23	1	20.00	0.00	20.00	0.00	0.00
....................................................TTAAGTAGTTAATACAC-TGGCGA-................................................................................................................................................................	23	1	20.00	0.00	20.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGG....................................................................................................................................................................	20	1	18.00	0.00	18.00	0.00	0.00
....................................................TTAAGTGGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
....................................................CTAAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	17.00	0.00	17.00	0.00	0.00
....................................................TTAAGTAGTTAATACAG-TGGCGA-................................................................................................................................................................	23	1	17.00	0.00	17.00	0.00	0.00
....................................................TTAAGTAGTTAGTACAA-TGGCGA-................................................................................................................................................................	23	1	16.00	0.00	16.00	0.00	0.00
....................................................TTAGGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	16.00	0.00	16.00	0.00	0.00
....................................................TTAAGTAGTTAATACCA-TGGCGA-................................................................................................................................................................	23	1	16.00	0.00	16.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCGG-................................................................................................................................................................	23	1	15.00	0.00	15.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCAA-................................................................................................................................................................	23	1	15.00	0.00	15.00	0.00	0.00
........................................................TTAGTTAATACAA-TGGCGA-................................................................................................................................................................	19	1	15.00	0.00	15.00	0.00	0.00
....................................................TCAAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	14.00	0.00	14.00	0.00	0.00
....................................................TTAAGAAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	13.00	0.00	13.00	0.00	0.00
....................................................TTAAGTAGTTAATAAAA-TGGCGA-................................................................................................................................................................	23	1	13.00	0.00	13.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TCGCGA-................................................................................................................................................................	23	1	13.00	0.00	13.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCA..................................................................................................................................................................	22	1	12.00	0.00	12.00	0.00	0.00
....................................................TTAACTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	12.00	0.00	12.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGCCGA-................................................................................................................................................................	23	1	12.00	0.00	12.00	0.00	0.00
....................................................TTAAGTAGTTAACACAA-TGGCGA-................................................................................................................................................................	23	1	12.00	0.00	12.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCGA-TT..............................................................................................................................................................	25	1	12.00	0.00	12.00	0.00	0.00
....................................................TTGAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	11.00	0.00	11.00	0.00	0.00
....................................................TTAAGTAGTTGATACAA-TGGCGA-................................................................................................................................................................	23	1	11.00	0.00	11.00	0.00	0.00
....................................................TTAAGTAGTTTATACAA-TGGCGA-................................................................................................................................................................	23	1	11.00	0.00	11.00	0.00	0.00
.....................................................TAAGTAGTTAATACAA-TGGCG..................................................................................................................................................................	21	1	10.00	0.00	10.00	0.00	0.00
....................................................TTAAGTACTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	10.00	0.00	10.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCCA-................................................................................................................................................................	23	1	10.00	0.00	10.00	0.00	0.00
.....................................................TAAGTAGTTAATACAA-TGGCGA-TT..............................................................................................................................................................	24	1	10.00	0.00	10.00	0.00	0.00
....................................................TTAAGTCGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	10.00	0.00	10.00	0.00	0.00
....................................................TTAAGTAGTTAATATAA-TGGCGA-................................................................................................................................................................	23	1	9.00	0.00	9.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCGC-................................................................................................................................................................	23	1	9.00	0.00	9.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGC...................................................................................................................................................................	21	1	9.00	0.00	9.00	0.00	0.00
....................................................TTAAGTAATTAATACAA-TGGCGA-................................................................................................................................................................	23	1	9.00	0.00	9.00	0.00	0.00
....................................................TTAAGTAGTTAATCCAA-TGGCGA-................................................................................................................................................................	23	1	8.00	0.00	8.00	0.00	0.00
....................................................................................................CGCATTGTGTGAGTTACTTTGTT..................................................................................................................	23	1	8.00	0.00	8.00	0.00	0.00
....................................................TTCAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	8.00	0.00	8.00	0.00	0.00
......................................................AAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	21	1	8.00	0.00	8.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGACGA-................................................................................................................................................................	23	1	8.00	0.00	8.00	0.00	0.00
....................................................TTAAGTAGTTCATACAA-TGGCGA-................................................................................................................................................................	23	1	7.00	0.00	7.00	0.00	0.00
....................................................TTACGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	7.00	0.00	6.00	1.00	0.00
....................................................TTAAGTTGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	6.00	0.00	6.00	0.00	0.00
....................................................TTAAGCAGTTAATACAA-TGGCG..................................................................................................................................................................	22	1	6.00	0.00	6.00	0.00	0.00
.......................................................AGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	20	1	6.00	0.00	6.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGAG..................................................................................................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCGA-C...............................................................................................................................................................	24	1	5.00	0.00	5.00	0.00	0.00
....................................................TAAAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	5.00	0.00	5.00	0.00	0.00
....................................................TTAAGTxxTTAATACAA-TGGCGA-................................................................................................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGGGA-................................................................................................................................................................	23	1	5.00	0.00	5.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-AGGCGA-................................................................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
....................................................TTAAGTAGTTxATACAA-TGGCGA-................................................................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
....................................................TTAAGTAGATAATACAA-TGGCGA-................................................................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
....................................................TTATGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
.............................................................................TTCGTATTCCAT---T-GTACATC........................................................................................................................................	20	1	4.00	0.00	4.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCT..................................................................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
....................................................TTAAGTAGTTATTACAA-TGGCGA-................................................................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TTGCG..................................................................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
....................................................................................................CGCATTGTGTGAGTTACTTTG....................................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................GCATTGTGTGAGTTACTTTG....................................................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
....................................................TTTAGTAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TTGCGA-T...............................................................................................................................................................	24	1	3.00	0.00	3.00	0.00	0.00
....................................................TTAAATAGTTAATACAA-TGGCGA-................................................................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
....................................................TTAAGTAGTTTATACAA-TGGCGA-T...............................................................................................................................................................	24	1	3.00	0.00	3.00	0.00	0.00
....................................................TTAAGTAGTTAATACAA-TGGCGT-................................................................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.....................................................TAAGTAGTTAATACAA-TGGC...................................................................................................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
....................................................TTAAGTAGTTACTACAA-TGGCGA-................................................................................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00

droVir3

TCAG---TA---AGGCTT------GCCCATAAATGTCTTGAAAATTTGTCATTTAAGTAGGTCACACAA--TGCGA-TGC------AAGAAAA-AA-CTCGCCCTTGTATTAACTACTTAAGCGTTCAATTTT-CATTG---CAGCAA-----------------------------------------------------------------------------------GCCTTA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

AAAG---TT---AAGTAAAATAACAAACTTAAG----TTGAATATTATACATATATATAA---------AATGCAT-CTC--------------------------GTAAGCCATATATATGTATATAAATATATATCA---TATCT--------------------------------------------------------------------ATTGTTATTGCTGATCGACTGA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................................................................................................ATATATGTATAGAAATATATGT....................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................ATATATATGTATAGAAAGATA.......................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00

droGri2

ATAT---T-------------TATAATCACT---GTATTGAAAATTTAACACTTAAGTAGTTGATACAA-GGGCGAGTTT------CATA----AAGTATCGCATTGTGTGACCTACTTGAATGAGAGATTTTTA-----AGATA-CTG------------------------------------------------------------------------------------TAAA	Size	Hit Count	Total Norm	V109 Male body
....................................................TTAAGTAGTTGATACAA-GGGCGA.................................................................................................................................................................	23	1	2.00	2.00
....................................................TTAAGTCGTTGATACAA-GGGCGA.................................................................................................................................................................	23	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image