hsa-mir-558

AGTAGGGGAATTATTCTCTTTGATTTCATGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTATTTTGGTATAGTAGCTCTAGACTCTATTATAGTTTCCTGAGCTGCTGTACCAAAATACCACAAACGGGCTGGCTTAAAACAACTGAAATTTATTCTCAATAGTTGAGGAGGCTGTAAGTCT **************************************************************.((((((.((((((((((((((((((..((..(((...)))..))..))))))))))))))))))))))))............*********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR139217 thymus	SRR139205 spleen	SRR039620 liver	SRR330919 skin	SRR139201 placenta	SRR139208 testes	TAX577746 breast	SRR342894 heart	SRR342900 heart	TAX577579 breast	SRR342897 heart	SRR553573 cerebellum
..........................................GTGTGTGTGTGTGTGTGTGTG...................................................................................................................................	21	0	20	22577.00	451540	451540	0	0	0	0	0	0	0	0	0	0	0
.............................GTCGTGTGTGTGTGTGTGTG.................................................................................................................................................	20	0	20	33.60	672	0	672	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CTGAGCTGCTGTACCAAAATACC..............................................................	23	0	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................TATAGTAGCTCTAGA....................................................................................................	15	0	6	1.00	6	0	0	0	0	0	6	0	0	0	0	0	0
..................................................................................................................................CCACAAACGGGCTGGCTTAAAAC.........................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TGTGGTTATTTTGGGATAGTAGC..........................................................................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................CATGTCGTGTGTGTG.........................................................................................................................................................	15	0	19	1.00	19	0	0	0	0	19	0	0	0	0	0	0	0
.................................................................TGTGGTTATTTTGGTATAGTAGC..........................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..TAGGGGTATTATTCTCTTT.............................................................................................................................................................................	19	1	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................TTGAGGAGGCTG.......	12	0	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0
...AGGGGTATTATTCTCTTT.............................................................................................................................................................................	18	1	19	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................ACGGGCTGGC................................................	10	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................AAACGGGCTGGC................................................	12	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................AACGGGCTGG.................................................	10	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AGGAGGCTGTA.....	11	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................AGCGGCTGTACCAAAA..................................................................	16	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
hg38	chr2:32532103-32532296 +	hsa-mir-558	AGTAGGGGAATTATTCTCTTTGATTTCATGTCg----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGTTATTTTGGTATAGTAGCTCTAGACTCTATTAtagtttcctgagctgctgtaccaaaataccacaaacgggctggcttaaaacaactgaaatttattct-caata-gttgaggaggctgtaagtct
panTro4	chr2A:33015345-33015530 +		AGTAGGGGAATTATTCTCTTTGATTTCATGTCg----tgtgt--------gtgtgtgtgtgtgtgtgtgtgtgGTTATTTTGGTATAGTAGCTCTAGACTCTATTAtagtttcctgagctgctgtaccaaaataccacaaatgggctggcttaaaacaactgaaatttattct-caata-gttgaggaggctgtaagtct
rheMac3	chr13:30745753-30745950 +		AGTAGGGGAATTATTCTATTTGATTTCATGTCGGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtTTATTTTGGCATAGTAGCTCTAGACTCTATTAtagtttcctgagctgctgtaccaaaataccacaaactgcctggcttaaaacaactgaaatttattct-caaca-gttgaggaggctataagtct
mm10	Unknown		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rn5	Unknown		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
canFam3	chr17:25768521-25768664 +		AGTAGGGGAATTATTCTCTGTAATTTCATGTACTTAGTGTATATATGTGTGTGTATATATAT----------------------------------------------GTTTCCt----------aacaaaggaccacaaactgaatggcctaatgcaacagaaatggattcttctatggggtagggaatctctaagtct
monDom5	Unknown		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

hg38

AGTAGGGGAATTATTCTCTTTGATTTCATGTCg----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGTTATTTTGGTATAGTAGCTCTAGACTCTATTAtagtttcctgagctgctgtaccaaaataccacaaacgggctggcttaaaacaactgaaatttattct-caata-gttgaggaggctgtaagtct	Size	Hit Count	Total Norm	Total	SRR039190 blood	SRR039191 blood	GSM450597 brain	GSM450598 brain	GSM450599 brain	GSM450600 brain	GSM450601 brain	GSM450602 brain	GSM450603 brain	GSM450604 brain	GSM450605 brain	GSM450606 brain	GSM450607 brain	GSM450608 brain	GSM450609 brain	GSM450610 brain	SRR095854 brain	SRR139162 brain	SRR139168 brain	RoviraIPAgo2 breast	SRR015446 breast	SRR015447 breast	SRR015448 breast	SRR191393 breast	SRR191394 breast	SRR191395 breast	SRR191396 breast	SRR191397 breast	SRR191398 breast	SRR191399 breast	SRR191400 breast	SRR191401 breast	SRR191402 breast	SRR191403 breast	SRR191404 breast	SRR191405 breast	SRR191406 breast	SRR191407 breast	SRR191408 breast	SRR191409 breast	SRR191410 breast	SRR191411 breast	SRR191412 breast	SRR191413 breast	SRR191414 breast	SRR191415 breast	SRR191416 breast	SRR191417 breast	SRR191418 breast	SRR191419 breast	SRR191420 breast	SRR191421 breast	SRR191422 breast	SRR191423 breast	SRR191424 breast	SRR191425 breast	SRR191426 breast	SRR191427 breast	SRR191428 breast	SRR191429 breast	SRR191430 breast	SRR191431 breast	SRR191432 breast	SRR191433 breast	SRR191434 breast	SRR191435 breast	SRR191436 breast	SRR191437 breast	SRR191438 breast	SRR191439 breast	SRR191440 breast	SRR191441 breast	SRR191442 breast	SRR191443 breast	SRR191444 breast	SRR191445 breast	SRR191446 breast	SRR191447 breast	SRR191448 breast	SRR191449 breast	SRR191450 breast	SRR191451 breast	SRR191452 breast	SRR191453 breast	SRR191454 breast	SRR191455 breast	SRR191456 breast	SRR191457 breast	SRR191458 breast	SRR191459 breast	SRR191460 breast	SRR191461 breast	SRR191462 breast	SRR191463 breast	SRR191464 breast	SRR191465 breast	SRR191466 breast	SRR191467 breast	SRR191468 breast	SRR191469 breast	SRR191470 breast	SRR191471 breast	SRR191472 breast	SRR191473 breast	SRR191474 breast	SRR191475 breast	SRR191476 breast	SRR191477 breast	SRR191478 breast	SRR191479 breast	SRR191480 breast	SRR191481 breast	SRR191482 breast	SRR191483 breast	SRR191484 breast	SRR191485 breast	SRR191486 breast	SRR191487 breast	SRR191488 breast	SRR191489 breast	SRR191490 breast	SRR191491 breast	SRR191492 breast	SRR191493 breast	SRR191494 breast	SRR191495 breast	SRR191496 breast	SRR191497 breast	SRR191498 breast	SRR191499 breast	SRR191500 breast	SRR191501 breast	SRR191502 breast	SRR191503 breast	SRR191504 breast	SRR191505 breast	SRR191506 breast	SRR191507 breast	SRR191508 breast	SRR191509 breast	SRR191510 breast	SRR191511 breast	SRR191512 breast	SRR191513 breast	SRR191514 breast	SRR191515 breast	SRR191516 breast	SRR191517 breast	SRR191518 breast	SRR191519 breast	SRR191520 breast	SRR191521 breast	SRR191522 breast	SRR191523 breast	SRR191524 breast	SRR191525 breast	SRR191526 breast	SRR191527 breast	SRR191528 breast	SRR191529 breast	SRR191530 breast	SRR191531 breast	SRR191532 breast	SRR191533 breast	SRR191534 breast	SRR191535 breast	SRR191536 breast	SRR191537 breast	SRR191538 breast	SRR191539 breast	SRR191540 breast	SRR191541 breast	SRR191542 breast	SRR191543 breast	SRR191544 breast	SRR191545 breast	SRR191546 breast	SRR191547 breast	SRR191548 breast	SRR191549 breast	SRR191550 breast	SRR191551 breast	SRR191552 breast	SRR191553 breast	SRR191554 breast	SRR191555 breast	SRR191556 breast	SRR191557 breast	SRR191558 breast	SRR191559 breast	SRR191560 breast	SRR191561 breast	SRR191562 breast	SRR191563 breast	SRR191564 breast	SRR191565 breast	SRR191566 breast	SRR191567 breast	SRR191568 breast	SRR191569 breast	SRR191570 breast	SRR191571 breast	SRR191572 breast	SRR191573 breast	SRR191574 breast	SRR191575 breast	SRR191576 breast	SRR191577 breast	SRR191578 breast	SRR191579 breast	SRR191580 breast	SRR191581 breast	SRR191582 breast	SRR191583 breast	SRR191584 breast	SRR191585 breast	SRR191586 breast	SRR191587 breast	SRR191588 breast	SRR191589 breast	SRR191590 breast	SRR191591 breast	SRR191592 breast	SRR191593 breast	SRR191594 breast	SRR191595 breast	SRR191596 breast	SRR191597 breast	SRR191598 breast	SRR191599 breast	SRR191600 breast	SRR191601 breast	SRR191602 breast	SRR191603 breast	SRR191604 breast	SRR191605 breast	SRR191606 breast	SRR191607 breast	SRR191608 breast	SRR191609 breast	SRR191610 breast	SRR191611 breast	SRR191612 breast	SRR191613 breast	SRR191614 breast	SRR191615 breast	SRR191616 breast	SRR191617 breast	SRR191618 breast	SRR191619 breast	SRR191620 breast	SRR191621 breast	SRR191622 breast	SRR191623 breast	SRR191624 breast	SRR191625 breast	SRR191626 breast	SRR191627 breast	SRR191628 breast	SRR191629 breast	SRR191630 breast	SRR191631 breast	SRR191632 breast	SRR191633 breast	SRR191634 breast	SRR191635 breast	SRR191636 breast	SRR191637 breast	TAX577453 breast	TAX577579 breast	TAX577580 breast	TAX577588 breast	TAX577589 breast	TAX577590 breast	TAX577738 breast	TAX577739 breast	TAX577740 breast	TAX577741 breast	TAX577742 breast	TAX577743 breast	TAX577744 breast	TAX577745 breast	TAX577746 breast	SRR553573 cerebellum	GSM532871 cervix	GSM532873 cervix	GSM532875 cervix	GSM532877 cervix	GSM532879 cervix	GSM532881 cervix	GSM532883 cervix	GSM532885 cervix	GSM532887 cervix	GSM532889 cervix	GSM532929 cervix	SRR040006 cervix	SRR040008 cervix	SRR040010 cervix	SRR040012 cervix	SRR040014 cervix	SRR040016 cervix	SRR040018 cervix	SRR040020 cervix	SRR040022 cervix	SRR040024 cervix	SRR040026 cervix	SRR040028 cervix	SRR040030 cervix	SRR040032 cervix	SRR040034 cervix	SRR040036 cervix	SRR040038 cervix	SRR040040 cervix	SRR040042 cervix	SRR037876 fibroblast	SRR363673 fibroblast	SRR363674 fibroblast	SRR363675 fibroblast	SRR363676 fibroblast	SRR553572 frontal-cortex	SRR139164 heart	SRR139165 heart	SRR139166 heart	SRR139167 heart	SRR139169 heart	SRR139170 heart	SRR342894 heart	SRR342895 heart	SRR342896 heart	SRR342897 heart	SRR342898 heart	SRR342899 heart	SRR342900 heart	SRR342901 heart	SRR553574 heart	SRR139171 kidney	SRR139172 kidney	SRR139173 kidney	SRR139174 kidney	SRR139175 kidney	SRR139176 kidney	SRR553575 Kidney	SRR039611 liver	SRR039612 liver	SRR039613 liver	SRR039614 liver	SRR039615 liver	SRR039616 liver	SRR039617 liver	SRR039618 liver	SRR039619 liver	SRR039620 liver	SRR039621 liver	SRR039622 liver	SRR039623 liver	SRR039624 liver	SRR039625 liver	SRR139177 liver	SRR139178 liver	SRR139179 liver	SRR139180 liver	SRR139181 liver	SRR139182 liver	SRR139183 lung	SRR139184 lung	SRR139185 lung	SRR139186 lung	SRR139187 lung	SRR139188 lung	SRR139189 lung	SRR139190 lung	GSM379266 ovary	SRR139191 ovary	SRR139192 ovary	SRR139193 ovary	SRR139194 ovary	SRR139195 ovary	SRR139196 ovary	SRR139197 ovary	SRR139198 placenta	SRR139199 placenta	SRR139200 placenta	SRR139201 placenta	SRR330904 skin	SRR330905 skin	SRR330906 skin	SRR330907 skin	SRR330908 skin	SRR330909 skin	SRR330910 skin	SRR330911 skin	SRR330912 skin	SRR330913 skin	SRR330914 skin	SRR330915 skin	SRR330916 skin	SRR330917 skin	SRR330918 skin	SRR330919 skin	SRR330920 skin	SRR330921 skin	SRR330922 skin	SRR330923 skin	SRR444043 skin	SRR444045 skin	SRR444048 skin	SRR444050 skin	SRR444051 skin	SRR444060 skin	SRR444061 skin	SRR139202 spleen	SRR139203 spleen	SRR139204 spleen	SRR139205 spleen	SRR139206 spleen	SRR139207 spleen	SRR139208 testes	SRR139209 testes	SRR139210 testes	SRR139211 testes	SRR139212 testes	SRR139213 testes	SRR553576 testes	SRR139214 thymus	SRR139215 thymus	SRR139216 thymus	SRR139217 thymus	SRR139218 thymus	SRR139219 thymus	SRR094129 uterus	SRR094130 uterus	SRR094131 uterus	SRR094132 uterus
..............................................GTGTGTGTGTGTGTGTGTGTG.....................................................................................................................................	21	20	22577.00	451540	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	451540	0	0	0	0	0	0
.............................GTCG----TGTGTGTGTGTGTGTG...................................................................................................................................................	20	20	33.60	672	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	672	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CTGAGCTGCTGTACCAAAATACC................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................ACGGGCTGGC..................................................	10	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AAACGGGCTGGC..................................................	12	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AACGGGCTGG...................................................	10	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AGGAGGCTGTA.....	11	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

panTro4

AGTAGGGGAATTATTCTCTTTGATTTCATGTCg----tgtgt--------gtgtgtgtgtgtgtgtgtgtgtgGTTATTTTGGTATAGTAGCTCTAGACTCTATTAtagtttcctgagctgctgtaccaaaataccacaaatgggctggcttaaaacaactgaaatttattct-caata-gttgaggaggctgtaagtct	Size	Hit Count	Total Norm	Total
No Reads

rheMac3

AGTAGGGGAATTATTCTATTTGATTTCATGTCGGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtTTATTTTGGCATAGTAGCTCTAGACTCTATTAtagtttcctgagctgctgtaccaaaataccacaaactgcctggcttaaaacaactgaaatttattct-caaca-gttgaggaggctataagtct	Size	Hit Count	Total Norm	Total
No Reads

mm10

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

SRR042455
blood

SRR042459
blood

SRR042460
blood

SRR069834
blood

SRR073954
blood

SRR073955
blood

SRR525238
Blood

SRR525237
Blood

SRR042456
bone marrow

SRR042457
bone marrow

SRR042461
bone marrow

SRR042462
bone marrow

GSM317181
brain

GSM317182
brain

GSM361394
brain

GSM361395
brain

GSM361398
brain

GSM361399
brain

GSM361402
brain

GSM361407
brain

GSM361408
brain

GSM361415
brain

GSM361430
brain

GSM510444
brain

SRR037904
brain

SRR037905
brain

SRR037906
brain

SRR037907
brain

SRR038741
brain

SRR038744
brain

SRR039610
brain

SRR042477
brain

SRR060845
brain

SRR206939
brain

SRR206940
brain

SRR206941
brain

SRR206942
brain

SRR345196
brain

SRR345197
brain

SRR345198
brain

SRR345199
brain

SRR345200
brain

SRR345201
brain

SRR345202
brain

SRR345203
brain

SRR345204
brain

SRR345205
brain

SRR345206
brain

SRR345207
brain

SRR037919
embryo

SRR037920
embryo

SRR037921
embryo

SRR037922
embryo

SRR037923
embryo

SRR037924
embryo

SRR037925
embryo

SRR037926
embryo

SRR037927
embryo

SRR037928
embryo

SRR037929
embryo

SRR037930
embryo

SRR391845
embryo

SRR391846
embryo

SRR391847
embryo

SRR391848
embryo

SRR391849
embryo

SRR391850
embryo

SRR391851
embryo

SRR391852
embryo

SRR391853
embryo

SRR116846
epididymis

GSM566419
fibroblast

GSM566420
fibroblast

SRR039183
fibroblast

SRR039184
fibroblast

SRR039185
fibroblast

SRR039186
fibroblast

SRR042475
fibroblast

SRR390297
fibroblast

SRR390298
fibroblast

SRR042484
salivary gland

SRR042476
heart

SRR095853
heart

SRR095855BC1
heart

SRR095855BC10
heart

SRR095855BC2
heart

SRR095855BC3
heart

SRR095855BC4
heart

SRR095855BC5
heart

SRR095855BC6
heart

SRR095855BC7
heart

SRR095855BC8
heart

SRR095855BC9
heart

SRR065052
jejunum

SRR065053
jejunum

SRR065054
jejunum

SRR065055
jejunum

SRR065056
jejunum

SRR042480
kidney

SRR040488
liver

SRR042479
liver

SRR065045
liver

SRR065046
liver

SRR065047
liver

SRR065048
liver

SRR065049
liver

SRR065050
liver

SRR077864
liver

SRR077865
liver

SRR077866
liver

SRR042478
lung

SRR042468
lymph

SRR042469
lymph

SRR042470
lymph

SRR042472
lymph

SRR042473
lymph

SRR039152
muscle

SRR039153
muscle

SRR039154
muscle

SRR042483
muscle

SRR014234
ovary

SRR037896
ovary

SRR037897
ovary

SRR037898
ovary

SRR037899
ovary

SRR042486
ovary

SRR042481
pancreas

SRR065058
pancreas

SRR065059
pancreas

SRR042482
skin

SRR042463
spleen

SRR042465
spleen

SRR042466
spleen

SRR042467
spleen

SRR042471
spleen

SRR042487
spleen

SRR059768
spleen

SRR059769
spleen

SRR059770
spleen

SRR059771
spleen

SRR059772
spleen

SRR059773
spleen

GSM475281
testes

GSM509275
testes

GSM509279
testes

SRR014231
testes

SRR014235
testes

SRR014236
testes

SRR028731
testes

SRR037900
testes

SRR037901
testes

SRR037902
testes

SRR037903
testes

SRR042485
testes

SRR051939
testes

SRR051940
testes

SRR069809
testes

SRR069810
testes

SRR069811
testes

SRR248523
testes

SRR248524
testes

SRR248525
testes

SRR248526
testes

SRR248527
testes

SRR363956
testes

SRR363957
testes

SRR363958
testes

SRR363959
testes

SRR363960
testes

SRR363963
testes

SRR363964
testes

SRR042464
thymus

SRR059765
thymus

SRR059766
thymus

SRR059767
thymus

SRR032476
uterus

SRR032477
uterus

No Reads

rn5

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

canFam3

AGTAGGGGAATTATTCTCTGTAATTTCATGTACTTAGTGTATATATGTGTGTGTATATATAT----------------------------------------------GTTTCCt----------aacaaaggaccacaaactgaatggcctaatgcaacagaaatggattcttctatggggtagggaatctctaagtct	Size	Hit Count	Total Norm	Total
No Reads

monDom5

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

hsa-mir-558

chr2:32532153-32532246 +

Known

Unknown

Predicted structure

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

TCATCCCCTTAATAAGAGAAACTAAAGTACAGCACACACACACACACACACACACACACACACACACACCAATAAAACCATATCATCGAGATCTGAGATAATATCAAAGGACTCGACGACATGGTTTTATGGTGTTTGCCCGACCGAATTTTGTTGACTTTAAATAAGAGTTATCAACTCCTCCGACATTCAGA *********************************************.((((((.((((((((((((((((((..((..(((...)))..))..))))))))))))))))))))))))............**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR139218 thymus	SRR039622 liver	TAX577589 breast	TAX577738 breast	TAX577740 breast	TAX577743 breast	TAX577746 breast	TAX577590 breast	TAX577741 breast	SRR191467 breast	TAX577579 breast	TAX577580 breast	TAX577744 breast	TAX577745 breast	SRR039616 liver	SRR039623 liver	SRR040008 cervix	SRR342897 heart	TAX577453 breast
............TAAGAGAAACTAAAG.......................................................................................................................................................................	15	0	20	1.40	28	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CGACGACATGGTTTTATGGTGTTTG........................................................	25	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GGTTTTATGGTGTTTGCG......................................................	18	1	4	0.50	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GGTGATATGGTGTTTGCC......................................................	18	2	20	0.50	10	0	0	1	1	2	0	3	1	0	0	0	0	1	1	0	0	0	0	0
.........................................................................................................................TGGTGTTATGGTGTTTGCG......................................................	19	2	20	0.30	6	0	0	0	0	1	0	1	0	0	0	0	1	1	0	1	0	0	0	1
........................................................................................................................ATGGTTATATGGTGTTTGCG......................................................	20	2	7	0.29	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GGTTTTATGGTGTTTGCA......................................................	18	1	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGGTGATATGGTGTTTGCC......................................................	19	2	20	0.15	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................TGGTTTTATGGTGCTTGCG......................................................	19	2	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........TTAATAATAGAAACTAAAGAAC....................................................................................................................................................................	22	2	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................TGGTTTTATGGTGGTTGCG......................................................	19	2	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CACACGCACACACACACACCAATA........................................................................................................................	24	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................TATGGTGTTATGGTGTTTGCG......................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................TGGTGTTATGGTGTTTGCT......................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................GGTTATATGGTGGTTGCC......................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................GGTGTTATGGTGGTTGCC......................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................GATGGTTATATGGTGTTTGCG......................................................	21	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

-39.4	-38.6	-38.6