ID:

hsa-mir-3689d-2

Coordinate:

chr9:134850277-134850356 -

Confidence:

Known

Type:

Unknown

[View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-44.7 -44.3 -44.3

Sense Strand Reads

TTCCTGGGAGGTGTGATACCATGCTTCCTGGGAGGTGTGATCCCACGCTCACTGGGAGGTGTGATCTCACACTCGCTGGGAGGTGTGCTATCGTCTTCCCTGGGAGGTGTGATCCTGTTCTTCCTGAGCGGTGTGATCCTGTGCTCCCTGGGGGGTCTGATCCTGTGCTTCCTGGGAGGT
***********************************...((((.((((((((..((((((...((((.(((.(((...((((((((......)).))))))...)))))).))))....))))))))))).))).)))).......***********************************
Read size # Mismatch Hit Count Total Norm Total SRR139203
spleen
SRR191484
breast
SRR039190
blood
TAX577743
breast
TAX577588
breast
SRR040040
cervix
RoviraIPAgo2
breast
SRR040028
cervix
..........................................................................................TCGTCTTCCCTGGGAG.......................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0
...........TGTGATACCATGCTTCCTGGGAT.................................................................................................................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0
...........TGTGATATCATGCTTCCTGGGAA.................................................................................................................................................. 23 2 6 0.17 1 0 0 1 0 0 0 0 0
..............................................................................GGCGGTCTGCTATCGTCT.................................................................................... 18 2 11 0.09 1 0 0 0 1 0 0 0 0
................................................................................................TCTCTGGGATGCGTGATCCTGT.............................................................. 22 3 13 0.08 1 0 0 0 0 1 0 0 0
...............................................CTCACAGGGAGGTGTCATCTC................................................................................................................ 21 2 17 0.06 1 0 0 0 0 0 1 0 0
...CTGGGAGGTGAGATACAATG............................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 1 0
..CCTGGCAGGCGTGATACC................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAGGACCCTCCACACTATGGTACGAAGGACCCTCCACACTAGGGTGCGAGTGACCCTCCACACTAGAGTGTGAGCGACCCTCCACACGATAGCAGAAGGGACCCTCCACACTAGGACAAGAAGGACTCGCCACACTAGGACACGAGGGACCCCCCAGACTAGGACACGAAGGACCCTCCA
***********************************...((((.((((((((..((((((...((((.(((.(((...((((((((......)).))))))...)))))).))))....))))))))))).))).)))).......***********************************
Read size # Mismatch Hit Count Total Norm Total SRR139167
heart
SRR139171
kidney
SRR139172
kidney
SRR139179
liver
SRR139195
ovary
SRR139198
placenta
SRR139208
testes
SRR139210
testes
SRR139215
thymus
SRR330914
skin
TAX577743
breast
TAX577739
breast
SRR095854
brain
SRR330915
skin
SRR330917
skin
SRR342901
heart
TAX577741
breast
..........................................................................CGACCCTCCACACGAT.......................................................................................... 16 0 2 8.00 16 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0
..........CACACTATGGTACGA........................................................................................................................................................... 15 0 6 1.00 6 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0
....................................................................................................................CAAGAAGTACTCGGCTCACTAG.......................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............CTATGTTACGAAGGAGCCT................................................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............CACGATGGCACGAAGGACCCT................................................................................................................................................... 21 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................AGTGTGAGCG........................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................TCTAGGTCACGAAGGACCCT... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................CGAGGGACCCCCC......................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................GGGACCCCCC......................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................CCCCAGACTA................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
hg38 chr9:134850227-134850406 - hsa-mir-3689b TTCCTGGGAGGTGTGATACCATGCTTC---------------------CTGGGAGGTGTGATCCCACGCTCACTGGGAGGTGTGATCTCA------------------------CACTCGCTGGGAGGTGTGCTATCGTCTTCCCTGGGAGGTGTGATCCTGTTCTTCCTGAGCGGTGTGATCCTGTGCTCCCTGGGGGGTCTGATCCTGTGCTTCCTGGGAGGT
panTro4 Unknown TCCTTGGGAGGTATGATCTCGT-GCTCCGTGGGAGTTGTCCGTGCTTCCTGGGAGGTGTGATCCCGTGCTTCCTGGGAGGTGTGATTCCA------------------------TGCTCACTGGGAGGTGTGATATC------------------------GTGGTTCCTGGGAGGTGTGATCCTGTGCTCCCTGGGGGTTCTGATCCTGTGCTTCCTGGGAGGT
rheMac3 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
mm10 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rn5 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
canFam3 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
monDom5 chr1:381852741-381852920 - CTTTGGAGAAGGAAAATATCATTGCCT---------------------CAGAAAAGGCAGATCCCATGCCTGCAGGGAAGATCCACCCTATGTCTTTAGGGAAGGCAGATTCCACATC------------------------TCTGGGAAAAGTGGAGCCTATGTCTTTAGACAAGGCAGATCCTATGTCCTCTGGGGAGGTGGATCTCACATCCTTAGAAAAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
hg38
TTCCTGGGAGGTGTGATACCATGCTTC---------------------CTGGGAGGTGTGATCCCACGCTCACTGGGAGGTGTGATCTCA------------------------CACTCGCTGGGAGGTGTGCTATCGTCTTCCCTGGGAGGTGTGATCCTGTTCTTCCTGAGCGGTGTGATCCTGTGCTCCCTGGGGGGTCTGATCCTGTGCTTCCTGGGAGGTSizeHit CountTotal NormTotalSRR039190
blood
SRR039191
blood
GSM450597
brain
GSM450598
brain
GSM450599
brain
GSM450600
brain
GSM450601
brain
GSM450602
brain
GSM450603
brain
GSM450604
brain
GSM450605
brain
GSM450606
brain
GSM450607
brain
GSM450608
brain
GSM450609
brain
GSM450610
brain
SRR095854
brain
SRR139162
brain
SRR139168
brain
RoviraIPAgo2
breast
SRR015446
breast
SRR015447
breast
SRR015448
breast
SRR191393
breast
SRR191394
breast
SRR191395
breast
SRR191396
breast
SRR191397
breast
SRR191398
breast
SRR191399
breast
SRR191400
breast
SRR191401
breast
SRR191402
breast
SRR191403
breast
SRR191404
breast
SRR191405
breast
SRR191406
breast
SRR191407
breast
SRR191408
breast
SRR191409
breast
SRR191410
breast
SRR191411
breast
SRR191412
breast
SRR191413
breast
SRR191414
breast
SRR191415
breast
SRR191416
breast
SRR191417
breast
SRR191418
breast
SRR191419
breast
SRR191420
breast
SRR191421
breast
SRR191422
breast
SRR191423
breast
SRR191424
breast
SRR191425
breast
SRR191426
breast
SRR191427
breast
SRR191428
breast
SRR191429
breast
SRR191430
breast
SRR191431
breast
SRR191432
breast
SRR191433
breast
SRR191434
breast
SRR191435
breast
SRR191436
breast
SRR191437
breast
SRR191438
breast
SRR191439
breast
SRR191440
breast
SRR191441
breast
SRR191442
breast
SRR191443
breast
SRR191444
breast
SRR191445
breast
SRR191446
breast
SRR191447
breast
SRR191448
breast
SRR191449
breast
SRR191450
breast
SRR191451
breast
SRR191452
breast
SRR191453
breast
SRR191454
breast
SRR191455
breast
SRR191456
breast
SRR191457
breast
SRR191458
breast
SRR191459
breast
SRR191460
breast
SRR191461
breast
SRR191462
breast
SRR191463
breast
SRR191464
breast
SRR191465
breast
SRR191466
breast
SRR191467
breast
SRR191468
breast
SRR191469
breast
SRR191470
breast
SRR191471
breast
SRR191472
breast
SRR191473
breast
SRR191474
breast
SRR191475
breast
SRR191476
breast
SRR191477
breast
SRR191478
breast
SRR191479
breast
SRR191480
breast
SRR191481
breast
SRR191482
breast
SRR191483
breast
SRR191484
breast
SRR191485
breast
SRR191486
breast
SRR191487
breast
SRR191488
breast
SRR191489
breast
SRR191490
breast
SRR191491
breast
SRR191492
breast
SRR191493
breast
SRR191494
breast
SRR191495
breast
SRR191496
breast
SRR191497
breast
SRR191498
breast
SRR191499
breast
SRR191500
breast
SRR191501
breast
SRR191502
breast
SRR191503
breast
SRR191504
breast
SRR191505
breast
SRR191506
breast
SRR191507
breast
SRR191508
breast
SRR191509
breast
SRR191510
breast
SRR191511
breast
SRR191512
breast
SRR191513
breast
SRR191514
breast
SRR191515
breast
SRR191516
breast
SRR191517
breast
SRR191518
breast
SRR191519
breast
SRR191520
breast
SRR191521
breast
SRR191522
breast
SRR191523
breast
SRR191524
breast
SRR191525
breast
SRR191526
breast
SRR191527
breast
SRR191528
breast
SRR191529
breast
SRR191530
breast
SRR191531
breast
SRR191532
breast
SRR191533
breast
SRR191534
breast
SRR191535
breast
SRR191536
breast
SRR191537
breast
SRR191538
breast
SRR191539
breast
SRR191540
breast
SRR191541
breast
SRR191542
breast
SRR191543
breast
SRR191544
breast
SRR191545
breast
SRR191546
breast
SRR191547
breast
SRR191548
breast
SRR191549
breast
SRR191550
breast
SRR191551
breast
SRR191552
breast
SRR191553
breast
SRR191554
breast
SRR191555
breast
SRR191556
breast
SRR191557
breast
SRR191558
breast
SRR191559
breast
SRR191560
breast
SRR191561
breast
SRR191562
breast
SRR191563
breast
SRR191564
breast
SRR191565
breast
SRR191566
breast
SRR191567
breast
SRR191568
breast
SRR191569
breast
SRR191570
breast
SRR191571
breast
SRR191572
breast
SRR191573
breast
SRR191574
breast
SRR191575
breast
SRR191576
breast
SRR191577
breast
SRR191578
breast
SRR191579
breast
SRR191580
breast
SRR191581
breast
SRR191582
breast
SRR191583
breast
SRR191584
breast
SRR191585
breast
SRR191586
breast
SRR191587
breast
SRR191588
breast
SRR191589
breast
SRR191590
breast
SRR191591
breast
SRR191592
breast
SRR191593
breast
SRR191594
breast
SRR191595
breast
SRR191596
breast
SRR191597
breast
SRR191598
breast
SRR191599
breast
SRR191600
breast
SRR191601
breast
SRR191602
breast
SRR191603
breast
SRR191604
breast
SRR191605
breast
SRR191606
breast
SRR191607
breast
SRR191608
breast
SRR191609
breast
SRR191610
breast
SRR191611
breast
SRR191612
breast
SRR191613
breast
SRR191614
breast
SRR191615
breast
SRR191616
breast
SRR191617
breast
SRR191618
breast
SRR191619
breast
SRR191620
breast
SRR191621
breast
SRR191622
breast
SRR191623
breast
SRR191624
breast
SRR191625
breast
SRR191626
breast
SRR191627
breast
SRR191628
breast
SRR191629
breast
SRR191630
breast
SRR191631
breast
SRR191632
breast
SRR191633
breast
SRR191634
breast
SRR191635
breast
SRR191636
breast
SRR191637
breast
TAX577453
breast
TAX577579
breast
TAX577580
breast
TAX577588
breast
TAX577589
breast
TAX577590
breast
TAX577738
breast
TAX577739
breast
TAX577740
breast
TAX577741
breast
TAX577742
breast
TAX577743
breast
TAX577744
breast
TAX577745
breast
TAX577746
breast
SRR553573
cerebellum
GSM532871
cervix
GSM532873
cervix
GSM532875
cervix
GSM532877
cervix
GSM532879
cervix
GSM532881
cervix
GSM532883
cervix
GSM532885
cervix
GSM532887
cervix
GSM532889
cervix
GSM532929
cervix
SRR040006
cervix
SRR040008
cervix
SRR040010
cervix
SRR040012
cervix
SRR040014
cervix
SRR040016
cervix
SRR040018
cervix
SRR040020
cervix
SRR040022
cervix
SRR040024
cervix
SRR040026
cervix
SRR040028
cervix
SRR040030
cervix
SRR040032
cervix
SRR040034
cervix
SRR040036
cervix
SRR040038
cervix
SRR040040
cervix
SRR040042
cervix
SRR037876
fibroblast
SRR363673
fibroblast
SRR363674
fibroblast
SRR363675
fibroblast
SRR363676
fibroblast
SRR553572
frontal-cortex
SRR139164
heart
SRR139165
heart
SRR139166
heart
SRR139167
heart
SRR139169
heart
SRR139170
heart
SRR342894
heart
SRR342895
heart
SRR342896
heart
SRR342897
heart
SRR342898
heart
SRR342899
heart
SRR342900
heart
SRR342901
heart
SRR553574
heart
SRR139171
kidney
SRR139172
kidney
SRR139173
kidney
SRR139174
kidney
SRR139175
kidney
SRR139176
kidney
SRR553575
Kidney
SRR039611
liver
SRR039612
liver
SRR039613
liver
SRR039614
liver
SRR039615
liver
SRR039616
liver
SRR039617
liver
SRR039618
liver
SRR039619
liver
SRR039620
liver
SRR039621
liver
SRR039622
liver
SRR039623
liver
SRR039624
liver
SRR039625
liver
SRR139177
liver
SRR139178
liver
SRR139179
liver
SRR139180
liver
SRR139181
liver
SRR139182
liver
SRR139183
lung
SRR139184
lung
SRR139185
lung
SRR139186
lung
SRR139187
lung
SRR139188
lung
SRR139189
lung
SRR139190
lung
GSM379266
ovary
SRR139191
ovary
SRR139192
ovary
SRR139193
ovary
SRR139194
ovary
SRR139195
ovary
SRR139196
ovary
SRR139197
ovary
SRR139198
placenta
SRR139199
placenta
SRR139200
placenta
SRR139201
placenta
SRR330904
skin
SRR330905
skin
SRR330906
skin
SRR330907
skin
SRR330908
skin
SRR330909
skin
SRR330910
skin
SRR330911
skin
SRR330912
skin
SRR330913
skin
SRR330914
skin
SRR330915
skin
SRR330916
skin
SRR330917
skin
SRR330918
skin
SRR330919
skin
SRR330920
skin
SRR330921
skin
SRR330922
skin
SRR330923
skin
SRR444043
skin
SRR444045
skin
SRR444048
skin
SRR444050
skin
SRR444051
skin
SRR444060
skin
SRR444061
skin
SRR139202
spleen
SRR139203
spleen
SRR139204
spleen
SRR139205
spleen
SRR139206
spleen
SRR139207
spleen
SRR139208
testes
SRR139209
testes
SRR139210
testes
SRR139211
testes
SRR139212
testes
SRR139213
testes
SRR553576
testes
SRR139214
thymus
SRR139215
thymus
SRR139216
thymus
SRR139217
thymus
SRR139218
thymus
SRR139219
thymus
SRR094129
uterus
SRR094130
uterus
SRR094131
uterus
SRR094132
uterus
.......................................................................................................................................TCGTCTTCCCTGGGAG..........................................................................1611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........TGTGATACCATGCTTC---------------------CTGGGAT..........................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
panTro4
TCCTTGGGAGGTATGATCTCGT-GCTCCGTGGGAGTTGTCCGTGCTTCCTGGGAGGTGTGATCCCGTGCTTCCTGGGAGGTGTGATTCCA------------------------TGCTCACTGGGAGGTGTGATATC------------------------GTGGTTCCTGGGAGGTGTGATCCTGTGCTCCCTGGGGGTTCTGATCCTGTGCTTCCTGGGAGGTSizeHit CountTotal NormTotal
No Reads
rheMac3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
mm10
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalSRR042455
blood
SRR042459
blood
SRR042460
blood
SRR069834
blood
SRR073954
blood
SRR073955
blood
SRR525238
Blood
SRR525237
Blood
SRR042456
bone marrow
SRR042457
bone marrow
SRR042461
bone marrow
SRR042462
bone marrow
GSM317181
brain
GSM317182
brain
GSM361394
brain
GSM361395
brain
GSM361398
brain
GSM361399
brain
GSM361402
brain
GSM361407
brain
GSM361408
brain
GSM361415
brain
GSM361430
brain
GSM510444
brain
SRR037904
brain
SRR037905
brain
SRR037906
brain
SRR037907
brain
SRR038741
brain
SRR038744
brain
SRR039610
brain
SRR042477
brain
SRR060845
brain
SRR206939
brain
SRR206940
brain
SRR206941
brain
SRR206942
brain
SRR345196
brain
SRR345197
brain
SRR345198
brain
SRR345199
brain
SRR345200
brain
SRR345201
brain
SRR345202
brain
SRR345203
brain
SRR345204
brain
SRR345205
brain
SRR345206
brain
SRR345207
brain
SRR037919
embryo
SRR037920
embryo
SRR037921
embryo
SRR037922
embryo
SRR037923
embryo
SRR037924
embryo
SRR037925
embryo
SRR037926
embryo
SRR037927
embryo
SRR037928
embryo
SRR037929
embryo
SRR037930
embryo
SRR391845
embryo
SRR391846
embryo
SRR391847
embryo
SRR391848
embryo
SRR391849
embryo
SRR391850
embryo
SRR391851
embryo
SRR391852
embryo
SRR391853
embryo
SRR116846
epididymis
GSM566419
fibroblast
GSM566420
fibroblast
SRR039183
fibroblast
SRR039184
fibroblast
SRR039185
fibroblast
SRR039186
fibroblast
SRR042475
fibroblast
SRR390297
fibroblast
SRR390298
fibroblast
SRR042484
salivary gland
SRR042476
heart
SRR095853
heart
SRR095855BC1
heart
SRR095855BC10
heart
SRR095855BC2
heart
SRR095855BC3
heart
SRR095855BC4
heart
SRR095855BC5
heart
SRR095855BC6
heart
SRR095855BC7
heart
SRR095855BC8
heart
SRR095855BC9
heart
SRR065052
jejunum
SRR065053
jejunum
SRR065054
jejunum
SRR065055
jejunum
SRR065056
jejunum
SRR042480
kidney
SRR040488
liver
SRR042479
liver
SRR065045
liver
SRR065046
liver
SRR065047
liver
SRR065048
liver
SRR065049
liver
SRR065050
liver
SRR077864
liver
SRR077865
liver
SRR077866
liver
SRR042478
lung
SRR042468
lymph
SRR042469
lymph
SRR042470
lymph
SRR042472
lymph
SRR042473
lymph
SRR039152
muscle
SRR039153
muscle
SRR039154
muscle
SRR042483
muscle
SRR014234
ovary
SRR037896
ovary
SRR037897
ovary
SRR037898
ovary
SRR037899
ovary
SRR042486
ovary
SRR042481
pancreas
SRR065058
pancreas
SRR065059
pancreas
SRR042482
skin
SRR042463
spleen
SRR042465
spleen
SRR042466
spleen
SRR042467
spleen
SRR042471
spleen
SRR042487
spleen
SRR059768
spleen
SRR059769
spleen
SRR059770
spleen
SRR059771
spleen
SRR059772
spleen
SRR059773
spleen
GSM475281
testes
GSM509275
testes
GSM509279
testes
SRR014231
testes
SRR014235
testes
SRR014236
testes
SRR028731
testes
SRR037900
testes
SRR037901
testes
SRR037902
testes
SRR037903
testes
SRR042485
testes
SRR051939
testes
SRR051940
testes
SRR069809
testes
SRR069810
testes
SRR069811
testes
SRR248523
testes
SRR248524
testes
SRR248525
testes
SRR248526
testes
SRR248527
testes
SRR363956
testes
SRR363957
testes
SRR363958
testes
SRR363959
testes
SRR363960
testes
SRR363963
testes
SRR363964
testes
SRR042464
thymus
SRR059765
thymus
SRR059766
thymus
SRR059767
thymus
SRR032476
uterus
SRR032477
uterus
No Reads
rn5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
canFam3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
monDom5
CTTTGGAGAAGGAAAATATCATTGCCT---------------------CAGAAAAGGCAGATCCCATGCCTGCAGGGAAGATCCACCCTATGTCTTTAGGGAAGGCAGATTCCACATC------------------------TCTGGGAAAAGTGGAGCCTATGTCTTTAGACAAGGCAGATCCTATGTCCTCTGGGGAGGTGGATCTCACATCCTTAGAAAAGGSizeHit CountTotal NormTotal
No Reads

Generated: 12/12/2014 at 10:55 AM