ID:

hsa-mir-34a

 Coordinate:

chr1:9151668-9151777 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-38.8 -38.8 -38.5

Sense Strand Reads

GAGAGGCAGGACAGGCCTGTCCCCCGAGTCCCCTCCGGATGCCGTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAGTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTGGGGCCCAAGAGGGAAGATGAAGCGAGAGATGCCCAGACCAGTGGGAGACGCCAGGA
********************************************************.(((((((((((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..))))))))).))))..*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139191
ovary		 SRR139192
ovary		 SRR139194
ovary		 SRR139193
ovary		 SRR139177
liver		 SRR139186
lung		 SRR139179
liver		 SRR139184
lung		 SRR139178
liver		 SRR139214
thymus		 SRR139209
testes		 SRR139180
liver		 SRR139171
kidney		 SRR139216
thymus		 SRR139211
testes		 SRR139173
kidney		 SRR139203
spleen		 SRR139205
spleen		 SRR139195
ovary		 SRR139172
kidney		 SRR139174
kidney		 SRR139165
heart		 SRR139208
testes		 SRR139210
testes		 SRR139167
heart		 SRR139164
heart		 SRR139166
heart		 SRR139215
thymus		 SRR139217
thymus		 SRR191605
breast		 SRR139183
lung		 SRR139201
placenta		 SRR139200
placenta		 SRR139185
lung		 SRR363674
fibroblast		 TAX577744
breast		 SRR342898
heart		 SRR139188
lung		 SRR191602
breast		 SRR330919
skin		 TAX577743
breast		 SRR191590
breast		 TAX577745
breast		 TAX577579
breast		 SRR191604
breast		 SRR191592
breast		 SRR342897
heart		 SRR191598
breast		 TAX577738
breast		 SRR342895
heart		 SRR363673
fibroblast		 SRR139162
brain		 SRR342900
heart		 SRR342901
heart		 SRR040028
cervix		 SRR363675
fibroblast		 TAX577739
breast		 SRR191603
breast		 SRR191633
breast		 SRR191601
breast		 SRR139198
placenta		 SRR342896
heart		 TAX577740
breast		 SRR330921
skin		 SRR191564
breast		 SRR139199
placenta		 SRR095854
brain		 SRR139187
lung		 SRR191593
breast		 SRR330906
skin		 SRR191607
breast		 SRR342899
heart		 SRR342894
heart		 SRR330923
skin		 SRR191591
breast		 SRR330922
skin		 SRR191595
breast		 SRR191611
breast		 TAX577741
breast		 SRR191597
breast		 SRR191606
breast		 SRR330913
skin		 SRR191551
breast		 SRR039625
liver		 SRR191589
breast		 SRR191557
breast		 SRR139168
brain		 SRR139202
spleen		 SRR330915
skin		 SRR139197
ovary		 SRR191588
breast		 SRR330907
skin		 SRR040010
cervix		 SRR191600
breast		 SRR139175
kidney		 SRR191563
breast		 SRR191615
breast		 SRR330908
skin		 SRR330916
skin		 SRR191548
breast		 SRR191612
breast		 SRR191614
breast		 SRR139204
spleen		 SRR191565
breast		 TAX577746
breast		 SRR191599
breast		 SRR191629
breast		 SRR191632
breast		 SRR330904
skin		 TAX577580
breast		 SRR330911
skin		 SRR330920
skin		 SRR330917
skin		 SRR330914
skin		 SRR191635
breast		 SRR191624
breast		 SRR553576
testes		 SRR191434
breast		 SRR191631
breast		 SRR191560
breast		 SRR139169
heart		 SRR191559
breast		 SRR330905
skin		 SRR191566
breast		 SRR191628
breast		 TAX577589
breast		 SRR363676
fibroblast		 SRR037876
fibroblast		 SRR139218
thymus		 SRR191558
breast		 SRR330912
skin		 SRR139176
kidney		 SRR191552
breast		 SRR191596
breast		 TAX577590
breast		 SRR040036
cervix		 SRR191622
breast		 SRR139196
ovary		 TAX577588
breast		 SRR191422
breast		 SRR139170
heart		 SRR553573
cerebellum		 TAX577742
breast		 SRR191625
breast		 SRR191406
breast		 SRR553572
frontal-cortex		 SRR191556
breast		 SRR039622
liver		 SRR139212
testes		 SRR039620
liver		 SRR191432
breast		 SRR191621
breast		 SRR191626
breast		 SRR139219
thymus		 SRR191460
breast		 SRR191617
breast		 SRR191420
breast		 SRR139189
lung		 TAX577453
breast		 SRR191586
breast		 SRR191627
breast		 SRR191456
breast		 SRR139182
liver		 SRR039615
liver		 SRR191620
breast		 SRR553575
Kidney		 SRR191410
breast		 SRR191623
breast		 SRR330910
skin		 SRR191425
breast		 SRR191473
breast		 SRR191610
breast		 SRR191459
breast		 SRR139181
liver		 SRR191444
breast		 SRR191581
breast		 SRR191578
breast		 SRR191482
breast		 GSM379266
ovary		 SRR191570
breast		 SRR039621
liver		 SRR094130
uterus		 SRR191393
breast		 SRR191576
breast		 SRR191613
breast		 SRR191397
breast		 SRR191619
breast		 SRR191575
breast		 SRR191449
breast		 SRR191571
breast		 SRR094129
uterus		 SRR191550
breast		 SRR191412
breast		 SRR191587
breast		 SRR191409
breast		 SRR039624
liver		 SRR191408
breast		 SRR191562
breast		 SRR191423
breast		 SRR191438
breast		 SRR039623
liver		 SRR039619
liver		 SRR191481
breast		 SRR191478
breast		 SRR191445
breast		 SRR139190
lung		 SRR040018
cervix		 SRR139207
spleen		 SRR191400
breast		 SRR191582
breast		 SRR191436
breast		 SRR191405
breast		 SRR094132
uterus		 SRR191479
breast		 SRR191428
breast		 RoviraIPAgo2
breast		 GSM450608
brain		 SRR191447
breast		 SRR191443
breast		 SRR191426
breast		 SRR094131
uterus		 SRR191464
breast		 SRR191402
breast		 SRR191407
breast		 SRR191417
breast		 SRR191461
breast		 SRR191609
breast		 SRR191471
breast		 SRR191415
breast		 SRR191554
breast		 SRR040012
cervix		 SRR191421
breast		 SRR191568
breast		 SRR191469
breast		 SRR191480
breast		 SRR191574
breast		 SRR191399
breast		 GSM450609
brain		 SRR191394
breast		 SRR191401
breast		 SRR191549
breast		 SRR553574
heart		 SRR191414
breast		 SRR191442
breast		 SRR191573
breast		 SRR191477
breast		 SRR039617
liver		 SRR191630
breast		 GSM450610
brain		 SRR191429
breast		 SRR191594
breast		 SRR039618
liver		 GSM450603
brain		 SRR330909
skin		 SRR191555
breast		 SRR191433
breast		 SRR191448
breast		 SRR191451
breast		 SRR191404
breast		 SRR191439
breast		 SRR191431
breast		 SRR191453
breast		 SRR191416
breast		 SRR191467
breast		 SRR191454
breast		 SRR191618
breast		 GSM450604
brain		 SRR191435
breast		 SRR191455
breast		 SRR039613
liver		 SRR191458
breast		 SRR039612
liver		 SRR191411
breast		 SRR039616
liver		 SRR191470
breast		 GSM450605
brain		 SRR191396
breast		 GSM450601
brain		 SRR191465
breast		 SRR191577
breast		 SRR139206
spleen		 SRR040016
cervix		 SRR191413
breast		 SRR191475
breast		 SRR191403
breast		 SRR040024
cervix		 SRR040014
cervix		 SRR191474
breast		 SRR191398
breast		 SRR191580
breast		 SRR191499
breast		 SRR191418
breast		 SRR191450
breast		 SRR191466
breast		 SRR191476
breast		 SRR040038
cervix		 SRR191553
breast		 SRR191579
breast		 SRR191468
breast		 SRR191585
breast		 SRR191608
breast		 SRR039611
liver		 SRR191430
breast		 SRR191569
breast		 GSM450602
brain		 SRR040022
cervix		 SRR040006
cervix		 SRR191497
breast		 SRR191452
breast		 SRR191472
breast		 SRR191567
breast		 SRR191427
breast		 SRR191457
breast		 SRR191509
breast		 SRR039614
liver		 GSM450599
brain		 SRR040030
cervix		 SRR191561
breast		 SRR191572
breast		 SRR191462
breast		 SRR191441
breast		 GSM450600
brain		 SRR191521
breast		 GSM532871
cervix		 SRR191518
breast		 SRR191500
breast		 GSM532877
cervix		 GSM532929
cervix		 SRR191463
breast		 SRR330918
skin		 SRR191419
breast		 SRR191545
breast		 SRR191492
breast		 SRR191547
breast		 GSM450607
brain		 SRR191508
breast		 SRR191541
breast		 SRR191486
breast		 SRR191517
breast		 SRR040032
cervix		 SRR191446
breast		 SRR191519
breast		 SRR191440
breast		 GSM450606
brain		 SRR040020
cervix		 SRR040034
cervix		 SRR191546
breast		 GSM532875
cervix		 SRR039191
blood		 SRR191494
breast		 SRR191522
breast		 SRR191485
breast		 SRR191502
breast		 SRR191540
breast		 SRR191616
breast		 GSM450598
brain		 SRR191510
breast		 SRR191539
breast		 SRR191584
breast		 SRR191634
breast		 SRR191636
breast		 SRR015447
breast		 SRR040008
cervix		 SRR040040
cervix		 SRR191424
breast		 SRR191495
breast		 SRR191523
breast		 SRR191543
breast		 GSM532883
cervix		 SRR191528
breast		 SRR015446
breast		 SRR191437
breast		 SRR191488
breast		 SRR191504
breast		 SRR191530
breast		 SRR015448
breast		 SRR191483
breast		 SRR191526
breast		 SRR191532
breast		 SRR191531
breast		 SRR191544
breast		 SRR191493
breast		 SRR191395
breast		 SRR191491
breast		 SRR191505
breast		 SRR191516
breast		 SRR191520
breast		 SRR191524
breast		 SRR191542
breast		 SRR444048
skin		 SRR191498
breast		 SRR191506
breast		 SRR191511
breast		 SRR191527
breast		 SRR191536
breast		 GSM532873
cervix		 SRR191496
breast		 SRR191534
breast		 SRR191537
breast		 SRR444060
skin		 SRR191489
breast		 SRR191525
breast		 SRR191538
breast		 SRR191637
breast		 SRR444050
skin		 SRR444051
skin		 SRR191512
breast		 SRR191529
breast		 GSM450597
brain		 SRR039190
blood		 SRR191487
breast		 SRR191501
breast		 SRR191513
breast		 SRR191514
breast		 SRR191515
breast		 SRR191535
breast		 SRR191583
breast		 SRR191533
breast
.......................................................................TGGCAGTGTCTTAGCTGGTTGT..................................................................................................................... 22 0 1 344757.00 344757 23267 21932 21010 18909 13281 13051 12642 12709 10312 9154 9481 8857 8057 8141 8812 6822 7396 7094 9063 7377 6818 5213 4527 4351 4566 3856 3773 2458 1748 2632 2530 2733 2486 1980 1716 1447 1408 126 1124 900 927 1103 1107 794 945 977 883 953 947 817 701 971 722 773 826 684 691 676 898 505 466 560 598 529 679 701 2 279 575 438 642 543 522 455 582 461 457 565 322 440 547 436 524 393 523 488 0 242 449 680 382 399 371 492 389 333 264 336 354 379 398 336 157 322 266 322 305 290 259 241 268 235 221 241 277 293 215 181 220 255 223 216 227 166 221 154 226 128 198 167 177 0 179 165 163 18 143 339 143 123 0 104 124 151 95 57 149 88 80 42 150 120 111 0 110 94 138 87 96 125 142 89 0 84 102 49 100 106 78 92 81 105 95 131 77 71 75 69 0 44 28 16 55 73 81 75 91 55 83 53 19 72 58 57 48 15 66 70 61 56 28 16 39 50 48 0 75 0 61 64 55 39 15 46 40 41 12 36 28 51 15 20 29 39 35 27 51 30 36 62 48 37 33 28 43 30 32 24 24 31 43 19 38 25 30 31 18 48 13 42 48 17 11 28 32 26 26 22 17 16 21 15 20 29 30 22 19 17 19 10 22 3 23 7 15 8 10 9 12 9 9 17 9 15 23 21 31 13 12 26 17 8 21 8 16 3 18 11 6 19 18 2 14 6 6 16 18 8 13 11 5 8 7 4 13 6 15 8 7 5 5 1 8 7 10 2 10 4 10 4 8 6 0 4 4 4 0 6 2 7 0 2 4 3 9 1 3 3 1 2 2 2 1 1 3 1 1 0 4 2 5 3 5 0 2 1 2 0 3 0 0 2 1 1 3 1 1 3 1 1 0 1 0 0 2 0 0 0 1 3 0 0 1 2 0 2 0 0 1 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTT.................................................................................................................... 23 0 1 232080.00 232080 14041 13608 13483 11559 9570 7917 9287 8056 7611 6816 6316 6614 6037 6048 5584 4962 5281 5188 1314 4461 3831 4142 2660 2698 3748 3215 3233 3480 2788 1911 1652 528 348 1171 2009 828 1193 58 969 1118 592 851 435 443 759 729 758 715 324 664 927 305 607 618 341 789 329 425 459 562 297 598 257 529 419 99 1 61 479 442 458 476 453 477 422 444 456 436 193 347 395 385 408 75 320 375 0 226 307 56 387 339 183 222 177 359 334 336 285 306 254 280 146 264 169 290 234 263 281 147 219 284 254 255 195 242 156 159 235 183 136 135 164 183 165 91 194 75 97 168 165 0 185 164 83 7 138 28 85 123 0 66 84 140 84 69 105 18 31 13 94 56 115 0 99 95 88 58 77 105 64 73 0 4 66 48 77 73 81 72 40 92 73 36 57 74 62 53 0 57 8 6 49 48 44 55 63 44 37 38 6 65 54 49 49 2 50 46 40 46 4 5 43 34 46 0 15 0 25 34 42 22 3 37 47 34 1 38 37 42 2 35 34 29 44 33 38 29 27 25 5 33 26 30 29 28 29 5 27 27 18 27 29 29 20 20 1 20 7 16 19 2 11 21 36 23 26 23 19 21 23 18 17 15 10 22 5 23 17 0 20 2 18 0 14 11 12 5 13 12 4 5 22 16 10 2 3 14 11 10 6 8 10 13 8 0 9 12 11 14 8 0 6 6 4 4 1 4 7 7 4 6 15 4 0 3 3 8 6 9 6 4 2 4 0 2 1 4 1 0 4 3 4 1 3 1 2 2 3 0 5 1 8 2 0 0 1 1 0 1 1 2 2 4 2 0 4 3 4 4 1 3 0 0 2 0 0 2 0 2 0 2 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 2 0 1 1 0 0 1 0 0 0 0 0 1 1 0
.......................................................................TGGCAGTGTCTTAGCTGGTTG...................................................................................................................... 21 0 1 40928.00 40928 2901 2656 2555 2220 1165 1210 1164 1177 597 1346 973 450 743 1226 884 671 1370 1427 1874 728 677 486 514 620 472 335 452 296 227 311 266 533 447 243 123 128 176 244 136 81 96 165 84 201 61 136 104 86 72 124 35 109 138 113 78 42 61 55 46 101 208 84 48 47 97 109 0 53 45 51 50 63 88 60 59 44 101 10 56 78 47 46 44 81 15 29 237 61 62 46 55 47 44 33 58 28 71 34 43 30 14 66 40 36 34 39 39 32 32 29 22 29 21 17 19 8 38 13 37 33 44 35 24 27 10 22 27 23 54 20 25 83 17 25 16 3 9 12 25 21 112 32 15 3 18 20 15 37 40 7 13 8 16 69 7 13 9 21 19 8 6 24 71 26 5 6 6 12 13 10 2 7 6 18 4 10 10 10 0 9 13 9 6 9 22 4 2 5 3 5 9 9 2 3 3 2 6 9 2 2 11 4 3 1 6 15 5 24 1 7 5 4 2 0 10 36 7 8 8 3 8 3 2 3 4 4 0 6 2 9 8 5 2 1 0 0 2 5 4 5 7 1 3 2 3 3 7 4 4 3 6 4 6 4 2 6 0 7 2 9 4 20 0 7 1 6 2 2 2 2 2 0 1 7 2 3 1 5 2 1 5 4 0 1 1 5 1 0 3 2 1 0 0 0 0 0 2 2 2 0 0 0 4 4 3 0 1 1 1 0 0 0 1 1 2 2 0 1 0 0 1 2 1 1 0 1 0 1 0 0 1 0 1 1 1 1 0 0 0 3 0 2 1 0 1 1 2 2 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGT........................................................................................................................ 19 0 1 20270.00 20270 624 987 1406 887 485 688 598 538 364 291 417 461 299 559 515 384 473 571 512 332 542 216 364 628 252 240 477 358 330 20 237 630 731 255 12 40 21 669 2 13 34 24 24 119 5 12 7 10 30 15 8 118 11 5 15 6 24 4 16 11 228 5 29 4 3 127 0 255 3 3 1 5 9 3 1 4 12 9 57 7 5 6 0 12 2 3 253 48 3 36 6 6 20 2 79 2 16 3 7 0 4 5 47 3 12 5 5 2 1 17 0 4 4 1 3 1 1 0 2 4 59 2 2 4 7 13 1 20 36 0 1 115 1 3 7 0 1 5 6 2 156 0 9 0 1 0 0 8 30 10 2 1 6 65 0 0 2 27 7 0 2 2 103 14 1 1 1 2 0 0 0 0 0 8 0 0 0 3 0 1 1 3 1 0 2 0 1 1 0 0 0 0 2 3 1 0 1 0 3 3 3 0 0 2 0 20 0 21 0 0 0 1 0 0 0 4 25 3 2 0 0 2 1 0 1 1 0 1 1 1 5 0 0 1 0 0 0 6 0 1 4 0 0 1 0 0 0 0 5 0 1 2 7 1 0 2 0 1 0 1 0 2 0 2 0 0 5 0 1 0 0 1 0 1 0 1 0 1 0 1 5 2 0 1 0 5 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTT....................................................................................................................... 20 0 1 19628.00 19628 1127 1221 1100 1028 303 389 290 388 343 637 363 301 265 573 328 258 482 507 779 252 259 242 154 131 260 221 169 342 302 102 177 595 621 190 18 80 63 551 26 16 62 109 55 305 13 25 37 23 67 30 7 181 30 33 26 14 48 25 36 57 131 28 52 14 31 170 1 189 13 11 7 27 21 4 16 5 70 17 87 27 7 9 4 40 8 11 82 85 12 53 34 8 17 6 110 11 52 7 5 6 13 14 106 28 42 7 32 12 2 45 2 6 3 5 11 12 4 7 13 15 77 9 3 27 14 18 2 31 46 1 3 40 1 15 18 0 7 26 20 8 39 0 18 5 13 2 2 20 48 7 5 4 10 43 1 5 4 33 24 3 3 6 12 30 4 0 2 8 0 2 2 0 0 22 2 2 0 3 0 4 7 1 2 3 20 3 5 2 7 1 3 6 0 6 3 1 1 5 5 1 9 3 1 0 1 6 5 16 3 0 3 1 1 0 0 5 36 0 13 0 6 4 2 2 1 0 0 3 0 0 4 6 2 1 3 0 2 10 1 2 1 0 0 11 0 0 4 5 7 1 3 2 4 1 0 2 0 1 1 1 2 3 1 1 2 2 2 2 1 1 0 1 1 0 2 3 0 1 0 0 12 5 0 1 0 0 0 3 1 0 5 1 0 0 1 0 0 0 2 0 0 1 1 1 2 0 1 0 0 0 0 1 1 1 3 1 0 0 0 0 1 2 2 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AATCAGCAAGTATACTGCCCTA.......................................................................... 22 0 1 16957.00 16957 897 829 782 843 6 407 17 330 606 516 649 675 534 523 638 556 127 137 19 451 464 401 644 687 374 502 499 340 296 23 495 21 17 504 9 70 6 7 12 4 48 8 38 66 9 8 6 2 32 1 14 4 2 1 15 4 33 4 1 7 0 0 20 1 4 6 0 1 3 4 2 5 2 1 4 1 12 1 69 4 2 1 0 73 1 8 0 159 4 9 17 5 13 1 3 1 7 4 0 2 2 2 150 4 21 1 5 2 4 29 3 0 1 2 0 5 2 7 7 1 0 3 0 2 1 27 3 37 0 4 1 0 0 0 8 2 1 0 6 4 0 2 10 0 15 1 1 43 7 107 1 6 3 0 1 0 1 9 7 0 2 0 0 6 1 0 3 0 0 1 0 0 0 0 2 2 1 0 0 9 49 49 7 5 1 3 1 3 0 5 41 0 0 3 5 41 9 0 3 3 29 47 1 0 1 0 2 0 1 0 0 6 19 0 2 0 32 0 0 2 33 0 3 4 0 3 1 1 2 0 7 0 5 0 0 1 1 14 3 2 0 0 1 1 3 0 15 1 20 0 0 18 12 0 0 0 0 0 0 0 2 0 5 0 0 0 11 0 1 13 0 26 2 8 0 7 3 11 0 3 1 3 0 0 3 3 3 2 1 0 0 4 0 0 1 0 0 0 0 1 0 15 0 1 4 0 0 1 0 0 2 0 0 1 4 2 1 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 2 0 1 0 1 0 1 1 0 1 0 3 0 0 0 0 3 1 0 0 1 0 1 3 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTG.......................................................................................................................... 17 0 1 14053.00 14053 455 370 365 530 130 248 286 280 209 210 207 265 1178 192 230 1163 208 186 318 147 127 124 526 305 134 269 169 1216 1031 0 444 441 434 239 0 1 2 136 0 0 0 0 2 2 0 0 1 0 3 0 0 60 4 0 0 0 1 0 1 0 132 1 0 0 0 91 0 50 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 0 0 0 280 101 0 33 0 0 0 0 27 0 0 1 0 0 0 0 31 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 2 0 30 0 0 0 0 0 0 0 11 0 0 98 0 0 0 0 0 2 0 1 9 0 0 0 0 0 0 0 9 0 0 1 0 60 0 0 0 5 0 0 0 0 49 0 0 0 0 1 0 0 0 0 1 8 0 0 0 0 0 0 0 31 0 0 0 0 0 0 0 0 28 0 0 1 0 0 0 0 0 0 0 0 0 0 0 22 0 12 0 0 0 0 41 0 0 0 0 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGG......................................................................................................................... 18 0 1 11607.00 11607 418 178 163 373 224 377 202 489 187 172 113 198 178 205 123 210 238 171 584 178 143 102 533 267 82 401 208 253 237 5 341 614 607 164 12 20 15 590 2 3 17 5 8 18 3 3 4 1 15 13 4 132 6 7 1 8 10 0 3 2 201 4 7 3 3 190 0 323 0 4 5 5 6 8 2 3 4 4 8 2 0 3 1 4 0 2 174 38 6 74 0 5 2 0 87 1 3 5 4 3 3 1 15 0 3 0 0 1 0 7 0 2 1 1 0 1 4 0 1 0 35 0 2 0 1 2 0 2 46 0 2 75 1 3 6 1 0 13 3 2 63 1 2 1 0 1 1 4 39 2 0 1 4 53 0 0 0 9 3 0 0 1 46 2 2 1 0 0 1 0 0 0 0 12 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 13 1 27 0 1 0 0 1 0 0 1 0 3 1 0 0 0 0 0 1 1 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 12 1 0 0 0 5 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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...........................................................................AGTGTCTTAGCTGGTTGTTGG.................................................................................................................. 21 1 1 17.00 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGCAGGGTCTTAGCTGGTTGTTT................................................................................................................... 24 2 1 17.00 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 2 2 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGCAGTGTGTTAGCTGGTTGT..................................................................................................................... 22 1 1 17.00 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GGCAGTGTCTTAGCTGGTTGTTAA.................................................................................................................. 24 2 1 17.00 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AATCAGCAAGGATACTGCCCTA.......................................................................... 22 1 1 16.00 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCTCCGTCCTGTCCGGACAGGGGGCTCAGGGGAGGCCTACGGCACCTGGCCGGTCGACACTCACAAAGAAACCGTCACAGAATCGACCAACAACACTCGTTATCATTCCTTCGTTAGTCGTTCATATGACGGGATCTTCACGACGTGCAACACCCCGGGTTCTCCCTTCTACTTCGCTCTCTACGGGTCTGGTCACCCTCTGCGGTCCT
***********************************************************.(((((((((((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..))))))))).))))..******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139177
liver		 SRR139187
lung		 SRR139214
thymus		 SRR139164
heart		 SRR139172
kidney		 SRR139174
kidney		 SRR139178
liver		 SRR139184
lung		 SRR139211
testes		 SRR139219
thymus		 SRR553574
heart		 TAX577589
breast		 SRR342896
heart		 TAX577739
breast		 TAX577744
breast		 SRR342894
heart		 SRR094131
uterus		 TAX577740
breast		 SRR039618
liver		 GSM450603
brain		 SRR095854
brain		 SRR330907
skin		 SRR330913
skin		 SRR330916
skin		 SRR342895
heart		 SRR342900
heart		 SRR342901
heart
.....................................................................AAACCGTCACAGAATCGA........................................................................................................................... 18 0 2 3.00 6 2 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CCGGGTTCTCCCTTCT....................................... 16 0 4 2.00 8 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTTCACGACGTGCAA........................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AACCGTCACAGAATCGACC......................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GACCAACAACACTCGTT............................................................................................................ 17 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................ACAGGGGGCTCAGGG.................................................................................................................................................................................. 15 0 3 1.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AAACCGTCACAGAATCGACC......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................ACCGTCACAGAATCGACCAACA..................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AACCGTCACAGAATC............................................................................................................................. 15 0 13 1.00 13 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AAACCGTCACAGAATC............................................................................................................................. 16 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGTTAGTCGTTGATGTGACGG............................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GCTGTCCGGACAGGGGGGTCAGGA.................................................................................................................................................................................. 24 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GGGTCTGGTCACCCTCTG....... 18 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TCTGGTAACCCTTTGCGGGCC. 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GGGGGCTCAGGGCAGGC............................................................................................................................................................................. 17 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TATCTTCGCGTCGTGCAACAC........................................................ 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTTCTAGTCACCCTCTGCGAT... 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTCTGGTCACCGTGTGCGGT... 20 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TACTCGTTCATATGACGGCGT.......................................................................... 21 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................CCGTCACAGAAT.............................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................CGGCACCTGGC............................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGACGTGCAAC.......................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....CGTCCTGTCCGGAC............................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................AGGCCTACGG....................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................GGCCTACGGC...................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................GCTCTCTACGGGT..................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................CCTACGGCACCTG................................................................................................................................................................. 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................GGGTCTGGTCA.............. 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
hg38 chr1:9151618-9151827 - hsa-mir-34a GAGAGG--------------------CAGGACAGGCCTGTCCCCCGAGTCCCCTC------C-G----------GATGCC-------------------------------------GTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAG-TAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTGGGGCCCAAGAGGGAAGATG--A---AGCGAGAGATGCCCAGA-CCAG-------------TGGGAGACG------CCAGGA
panTro4 chr1:9177590-9177799 - GAGAGG--------------------CAGGACAGGCCTGTCCCCCGAGTCCCCTC------C-G----------GATGCC-------------------------------------GTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAG-TAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTGGGGCCCAAGAGGGAAGATG--A---AGCGAGAGATGCCCAGA-CCAG-------------TGGGAGACG------CCAGGA
rheMac3 chr1:12304419-12304628 - GAGAGG--------------------CAGGACAGGCCTGTCCCCCGAGTCCCCTC------C-G----------GATGCC-------------------------------------GTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAG-TAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTACACATTGTGGGGCCTGAGAGGGAAGATG--A---GGCGAGAGATGCCCAGA-CCAG-------------TGGGAGACG------CCAGGA
mm10 Unknown GGAGTGTGTCATACCTCGGTAGGGTCCACTACACATCTTTCTCCCGCAGCCTCTCCATCTTC-CTGTGACTGCGGGCGCC-------------------------------------TTGGGCTGGCCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGTTGGGCC-GAGAAGGAAAAG-GTCAGAGGTCAGCAACGCCCACA-CCCC-------------TGAGAGGCG------CT-GGA
rn5 chr5:170733234-170733395 + ----------------------------------------------------------------------------------------------------------------------TGGGCCGGCCGGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTTAGGCC-AAGAAGGAA------A---AGTCAGCGATGCCCAGA-CCTC-------------CGAGAGGCG------CCAGGA
canFam3 chr5:62485750-62485956 - GAGAGG--------------------CAGAGCAGGCCTGCCCCCTGAGTCATCGT------CAG------------------------------------------------------------GGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTAATAGTGAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTTGGGCCCAAGAGGGAAGAA-ATA---AGCGAGAGGCGCTCGGAGCCAG-------------CGTGAGACGCCAAAACCAGGA
monDom5 chr4:433575178-433575415 + GAAAAT--------------------TGGGAAAT----TTCTCC----TTTTCTC------C-T----------TGTGTTTAGACCCCAAGAAGATGAGAAGTCAGATCGTGGCAAGGTCGGCTGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTAATAGATAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTTAGGCCCGTGAAGA----TG----------------GTTGAGA-CCAGCCTGGGAACCCGGCGTTGGACA------CCAGGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
hg38
GAGAGG--------------------CAGGACAGGCCTGTCCCCCGAGTCCCCTC------C-G----------GATGCC-------------------------------------GTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAG-TAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTGGGGCCCAAGAGGGAAGATG--A---AGCGAGAGATGCCCAGA-CCAG-------------TGGGAGACG------CCAGGASizeHit CountTotal NormTotalSRR039190
blood		SRR039191
blood		GSM450597
brain		GSM450598
brain		GSM450599
brain		GSM450600
brain		GSM450601
brain		GSM450602
brain		GSM450603
brain		GSM450604
brain		GSM450605
brain		GSM450606
brain		GSM450607
brain		GSM450608
brain		GSM450609
brain		GSM450610
brain		SRR095854
brain		SRR139162
brain		SRR139168
brain		RoviraIPAgo2
breast		SRR015446
breast		SRR015447
breast		SRR015448
breast		SRR191393
breast		SRR191394
breast		SRR191395
breast		SRR191396
breast		SRR191397
breast		SRR191398
breast		SRR191399
breast		SRR191400
breast		SRR191401
breast		SRR191402
breast		SRR191403
breast		SRR191404
breast		SRR191405
breast		SRR191406
breast		SRR191407
breast		SRR191408
breast		SRR191409
breast		SRR191410
breast		SRR191411
breast		SRR191412
breast		SRR191413
breast		SRR191414
breast		SRR191415
breast		SRR191416
breast		SRR191417
breast		SRR191418
breast		SRR191419
breast		SRR191420
breast		SRR191421
breast		SRR191422
breast		SRR191423
breast		SRR191424
breast		SRR191425
breast		SRR191426
breast		SRR191427
breast		SRR191428
breast		SRR191429
breast		SRR191430
breast		SRR191431
breast		SRR191432
breast		SRR191433
breast		SRR191434
breast		SRR191435
breast		SRR191436
breast		SRR191437
breast		SRR191438
breast		SRR191439
breast		SRR191440
breast		SRR191441
breast		SRR191442
breast		SRR191443
breast		SRR191444
breast		SRR191445
breast		SRR191446
breast		SRR191447
breast		SRR191448
breast		SRR191449
breast		SRR191450
breast		SRR191451
breast		SRR191452
breast		SRR191453
breast		SRR191454
breast		SRR191455
breast		SRR191456
breast		SRR191457
breast		SRR191458
breast		SRR191459
breast		SRR191460
breast		SRR191461
breast		SRR191462
breast		SRR191463
breast		SRR191464
breast		SRR191465
breast		SRR191466
breast		SRR191467
breast		SRR191468
breast		SRR191469
breast		SRR191470
breast		SRR191471
breast		SRR191472
breast		SRR191473
breast		SRR191474
breast		SRR191475
breast		SRR191476
breast		SRR191477
breast		SRR191478
breast		SRR191479
breast		SRR191480
breast		SRR191481
breast		SRR191482
breast		SRR191483
breast		SRR191484
breast		SRR191485
breast		SRR191486
breast		SRR191487
breast		SRR191488
breast		SRR191489
breast		SRR191490
breast		SRR191491
breast		SRR191492
breast		SRR191493
breast		SRR191494
breast		SRR191495
breast		SRR191496
breast		SRR191497
breast		SRR191498
breast		SRR191499
breast		SRR191500
breast		SRR191501
breast		SRR191502
breast		SRR191503
breast		SRR191504
breast		SRR191505
breast		SRR191506
breast		SRR191507
breast		SRR191508
breast		SRR191509
breast		SRR191510
breast		SRR191511
breast		SRR191512
breast		SRR191513
breast		SRR191514
breast		SRR191515
breast		SRR191516
breast		SRR191517
breast		SRR191518
breast		SRR191519
breast		SRR191520
breast		SRR191521
breast		SRR191522
breast		SRR191523
breast		SRR191524
breast		SRR191525
breast		SRR191526
breast		SRR191527
breast		SRR191528
breast		SRR191529
breast		SRR191530
breast		SRR191531
breast		SRR191532
breast		SRR191533
breast		SRR191534
breast		SRR191535
breast		SRR191536
breast		SRR191537
breast		SRR191538
breast		SRR191539
breast		SRR191540
breast		SRR191541
breast		SRR191542
breast		SRR191543
breast		SRR191544
breast		SRR191545
breast		SRR191546
breast		SRR191547
breast		SRR191548
breast		SRR191549
breast		SRR191550
breast		SRR191551
breast		SRR191552
breast		SRR191553
breast		SRR191554
breast		SRR191555
breast		SRR191556
breast		SRR191557
breast		SRR191558
breast		SRR191559
breast		SRR191560
breast		SRR191561
breast		SRR191562
breast		SRR191563
breast		SRR191564
breast		SRR191565
breast		SRR191566
breast		SRR191567
breast		SRR191568
breast		SRR191569
breast		SRR191570
breast		SRR191571
breast		SRR191572
breast		SRR191573
breast		SRR191574
breast		SRR191575
breast		SRR191576
breast		SRR191577
breast		SRR191578
breast		SRR191579
breast		SRR191580
breast		SRR191581
breast		SRR191582
breast		SRR191583
breast		SRR191584
breast		SRR191585
breast		SRR191586
breast		SRR191587
breast		SRR191588
breast		SRR191589
breast		SRR191590
breast		SRR191591
breast		SRR191592
breast		SRR191593
breast		SRR191594
breast		SRR191595
breast		SRR191596
breast		SRR191597
breast		SRR191598
breast		SRR191599
breast		SRR191600
breast		SRR191601
breast		SRR191602
breast		SRR191603
breast		SRR191604
breast		SRR191605
breast		SRR191606
breast		SRR191607
breast		SRR191608
breast		SRR191609
breast		SRR191610
breast		SRR191611
breast		SRR191612
breast		SRR191613
breast		SRR191614
breast		SRR191615
breast		SRR191616
breast		SRR191617
breast		SRR191618
breast		SRR191619
breast		SRR191620
breast		SRR191621
breast		SRR191622
breast		SRR191623
breast		SRR191624
breast		SRR191625
breast		SRR191626
breast		SRR191627
breast		SRR191628
breast		SRR191629
breast		SRR191630
breast		SRR191631
breast		SRR191632
breast		SRR191633
breast		SRR191634
breast		SRR191635
breast		SRR191636
breast		SRR191637
breast		TAX577453
breast		TAX577579
breast		TAX577580
breast		TAX577588
breast		TAX577589
breast		TAX577590
breast		TAX577738
breast		TAX577739
breast		TAX577740
breast		TAX577741
breast		TAX577742
breast		TAX577743
breast		TAX577744
breast		TAX577745
breast		TAX577746
breast		SRR553573
cerebellum		GSM532871
cervix		GSM532873
cervix		GSM532875
cervix		GSM532877
cervix		GSM532879
cervix		GSM532881
cervix		GSM532883
cervix		GSM532885
cervix		GSM532887
cervix		GSM532889
cervix		GSM532929
cervix		SRR040006
cervix		SRR040008
cervix		SRR040010
cervix		SRR040012
cervix		SRR040014
cervix		SRR040016
cervix		SRR040018
cervix		SRR040020
cervix		SRR040022
cervix		SRR040024
cervix		SRR040026
cervix		SRR040028
cervix		SRR040030
cervix		SRR040032
cervix		SRR040034
cervix		SRR040036
cervix		SRR040038
cervix		SRR040040
cervix		SRR040042
cervix		SRR037876
fibroblast		SRR363673
fibroblast		SRR363674
fibroblast		SRR363675
fibroblast		SRR363676
fibroblast		SRR553572
frontal-cortex		SRR139164
heart		SRR139165
heart		SRR139166
heart		SRR139167
heart		SRR139169
heart		SRR139170
heart		SRR342894
heart		SRR342895
heart		SRR342896
heart		SRR342897
heart		SRR342898
heart		SRR342899
heart		SRR342900
heart		SRR342901
heart		SRR553574
heart		SRR139171
kidney		SRR139172
kidney		SRR139173
kidney		SRR139174
kidney		SRR139175
kidney		SRR139176
kidney		SRR553575
Kidney		SRR039611
liver		SRR039612
liver		SRR039613
liver		SRR039614
liver		SRR039615
liver		SRR039616
liver		SRR039617
liver		SRR039618
liver		SRR039619
liver		SRR039620
liver		SRR039621
liver		SRR039622
liver		SRR039623
liver		SRR039624
liver		SRR039625
liver		SRR139177
liver		SRR139178
liver		SRR139179
liver		SRR139180
liver		SRR139181
liver		SRR139182
liver		SRR139183
lung		SRR139184
lung		SRR139185
lung		SRR139186
lung		SRR139187
lung		SRR139188
lung		SRR139189
lung		SRR139190
lung		GSM379266
ovary		SRR139191
ovary		SRR139192
ovary		SRR139193
ovary		SRR139194
ovary		SRR139195
ovary		SRR139196
ovary		SRR139197
ovary		SRR139198
placenta		SRR139199
placenta		SRR139200
placenta		SRR139201
placenta		SRR330904
skin		SRR330905
skin		SRR330906
skin		SRR330907
skin		SRR330908
skin		SRR330909
skin		SRR330910
skin		SRR330911
skin		SRR330912
skin		SRR330913
skin		SRR330914
skin		SRR330915
skin		SRR330916
skin		SRR330917
skin		SRR330918
skin		SRR330919
skin		SRR330920
skin		SRR330921
skin		SRR330922
skin		SRR330923
skin		SRR444043
skin		SRR444045
skin		SRR444048
skin		SRR444050
skin		SRR444051
skin		SRR444060
skin		SRR444061
skin		SRR139202
spleen		SRR139203
spleen		SRR139204
spleen		SRR139205
spleen		SRR139206
spleen		SRR139207
spleen		SRR139208
testes		SRR139209
testes		SRR139210
testes		SRR139211
testes		SRR139212
testes		SRR139213
testes		SRR553576
testes		SRR139214
thymus		SRR139215
thymus		SRR139216
thymus		SRR139217
thymus		SRR139218
thymus		SRR139219
thymus		SRR094129
uterus		SRR094130
uterus		SRR094131
uterus		SRR094132
uterus
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGT...............................................................................................................................................221344757.003447570111619611198341224132971041031552401075123261312923173995396648100235893836203588138371236129251840421421150261811755256164525287748036268321221315301989722951102751020128296281530118113151631504643396910260110001210801720101200441100000210208220232003110000100101006343794372524179186232149488167216255870333679322166533644537303055739751126716404191255738252311035829775754845716544095332249250511246769452632547642185110556539881336264394229110212014310629315111114222130548220290898227750967942411431541639476915983221249271447110726610472310003000418537148311775916210826157118300128701171668422657385652133773456622305228175608831408543722773198057737768226818389049231013847181716422888281539313281103121264288571310253012709198013051279126870023267219321890921010906333968046670124862733259227438399336287826817743624144935422149002355294614550030000242739615770949045279481435188128002159154245881411748198019161515
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTT..............................................................................................................................................231232080.0023208010003454115112315713050340314927012551129252734101922842950497718542229271744848833123402724264716623942315923422462186293757465382637102371810177315207399339135131315113014297401416820343729435300220000040101406202000001440100003010210101020001001101342121311306186540818592536105375168135183846359419264183426657386202844481262121074341414105493873208514227294791945616434771529022256296942575919113954588389243625444280334295226366561387324214011564165234202352634594195127744314785918332432925719384592828435169664011000000410183535150420341300700075927200978919469321541423233374813604536645987581193476607618276037446149623831177048020040125138184275957076119287661436016528056117179176158580014041136081155913483131428562979934852828116444233933621812191653852553072852540111828452944447700001002265281146518840266063162698558431015668163480604827889706623
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTG................................................................................................................................................21140928.00409280300225362301754010923736000640143215212418363612032040195212010301034413613251291128460803071201224126740032072126020103100310000001000101001011020100011010000000201000000000000001000000000213079441729215292035331928973627024950305911022107000835515165591364561012578863933101136556131147500071014226671013625891283166103943732460190019201292522167261485615961288434321020000000110448145105078031300023351234227203354864524724411288124841041766313811317437286716775883600222677447133711281116559711644501871266117724312105324421150290126562220255518741246208109447533322451473441322254617624321081294744600011000611370401427524514973620884400381346296122622754699982
.................................................................................................................................................TGGCAGTGTCTTAGCTGGT..................................................................................................................................................19120270.0020270000104127510125650118253410210000000110011011102001011020230000000022000031001200030001020120000101200201011011002000300000000000000000000000000000000001000000000000000000000011000000040010100302400233400010000101000000000362241123112371052112452051000942516000111121062750221613007119176137302429579344024120100000000003120502000501500000002081261024021647725259156915572151150299332384542791151010014102010183012485364598461810323753825568825566927200624987887140651253622812773163012363100161374013444300000104847347571521364417628515300129135855933036650300
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTT.................................................................................................................................................20119628.001962802001212423003610711818250102100312322011132132100001110468502010112527230110111132100070103216100100140012123023110003130000010000001000500000000010000000011020210010000000000100100001161641000211191505113128270214100023000020000363481091625133701527237657262513102770001713201452052544781251031432513123601100243054520181867485287186280554200000000000011174055000026000000031718142222124216926077392130283763273033026525225825911040011133004237720914030334329030122121773881903891895513360112712211028110077926531311706215952311871023951253016614540000020854821065071216154363131328480463734257330246433161
.............................................................................................................................................................................................AATCAGCAAGTATACTGCCCTA...................................................................................................22116957.00169570303221141211731321420040020073033111233061549532001250401043012020021070003000102100000000010000130000000001002010000100000000002011010000100000010000000101100010000000000000010101200020000000184310014422519523135310020001031718483012042117124923220101212710011610503215172100007662962783233206910487038212000000000000013733200301511020003714943150240149937400210665210534451556464300152613468151847107494329417366061767500495330504407179008978298437821909061721404540031124010401110000100159127150137106446496876387025163405232960041493319
.................................................................................................................................................TGGCAGTGTCTTAGCTG....................................................................................................................................................17114053.0014053000000000000000006028000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001010000000201000002100031030012000000000000000000000000000000000000002691241691343090011204001178147116312727980000000000000000130209286265849444280239248501365220455370530365318233132914344410010100000000000001100000001012083118601252620730523090121012161921031116028312741
.................................................................................................................................................TGGCAGTGTCTTAGCTGG...................................................................................................................................................18111607.0011607000001001100000001321741000000010000000000000000001100002000000000000000000001010310000000100001000000000000000000001000000000000000000000000000000000000000000000000000000000000000003001111012000001300100000000000000100000005230043210022035050004301300002100114010011300003187326151078217208310000000000000230110150100010002412801401102208823563613441556701781782101438775101002011121420422418720219812463414891643773235909130418178373163584137420119060761402455010231641032338000000038238151711227533113267123390417225320523746530001
.................................................................................................................................................TGGCAGTGTCTTAGCT.....................................................................................................................................................1638390.0025170000000000000000004173990000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000105477111714102612034022010172011293153219222000000000000000015288786678181213241112636010292661637805614328315161629154442103151404136200100000000000020000000000075165542161212015335721045317101192122435713501081200000
............................................................................................................................................................................................CAATCAGCAAGTATACTGCCCTA...................................................................................................2317450.007450000011708950155102100000100431000201180330001010100002002000000011000100000100000000000000000011000000001100000000000000000000002110000110000000000020011000000000000000001000001021000000007163000211031320110201000000020322135030142331639120002000101010010012110030203000351019211911203273017600000000000000113000000060000000662410235197240205300112411202612352812083000550101513101071133412504274002231962352300510034429937435651600520110101010000104011200000008776846100312302324284201165161171140204345
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTT.............................................................................................................................................2417310.007310000021222140113010030001572063433929516153643113382210551931683471310450230110041101308881002343034127202001131517022817111200100000001000002201000000100000001300020000000000000000010010000489776183321863232417291034230151626905135511542158000492846804287634181079613760451887113739951271286435112944023214781554811101120174304549048009115412348296789585028181279110394000200000000011011300001800010001450120632070000008698841071819811588000000080200010004171937000000000000000000000000006062127797721789429874756760335258140106870000000000000000000260000009125
..................................................................................................................................................GGCAGTGTCTTAGCTGGTTGTT..............................................................................................................................................2215676.005676000000010000000044020004305832074144768371434446012061030130012101100000011001001301012004700011110100032000302100000000000000000000000000000000000000000000000000000000000000000010011670117128450210187616114112217754104100253242033101613114420181261827142274185102511541522526574822506912050021210004115438860800000000000004400000000530001000201442381111001157584002012111421419105127101105970041000000001200051431171409400621865414737100289282206278140199383464331091172811268013799150000000611521110012519910917600181528015472203411
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTA..............................................................................................................................................2315152.0051520000000242100021000200023127164112411154514821323604218391023622210101332100900138650327110231140110103007210321119020341161000000000000001011000200000000000000000000000001000001000000000012320195100645133421071753272325015031671102073000872869574867601159438194258122937912939310712629110360170319441210191712514260111620030001157291521269482836920196260107358100000100000030231400201500010001310420644258000000641138410014244867830000008000020015102208000000000000000000000000001712504928292064926512620091175148340000000000000000000100000000240
............................................................................................................................................................................................CAATCAGCAAGTATACTGCCCT....................................................................................................2214075.004075000100412013053301000000001102001411200010011110001001000000000020001000000001000000000000110001000000000001000000000000000002000120000000000000000000010000000000001000000000000000000000010000112221013400043000000000227322200011315171010020020001100000101100032004101002204140532433353110000000001008103201101300010004164100101911289700000041010198180173163100002002201138539276160101480081125106159024001181241141302508001611011101000000010000000000000374835570018616918517430383649384005472
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTA.............................................................................................................................................2413747.003747000020002120002000030006201224122015710540400742005255061140022116010530025113130212001250037410311011050410110311400000000010000000000000000100000000000000000000000000000000000000121013310114136151003152312140123401012141022000531425351132420102334210205371583085830054402811721071279113772581101658011101147331524209984734510140208110308000200000000080001000050000000731142641190000002856638879484659200000060000120111541011410000000000000000000000000020946362253151649402619320147237548530000000000000000000140000002312
..................................................................................................................................................GGCAGTGTCTTAGCTGGTTGT...............................................................................................................................................2113423.003423000001000000101041900001110033310271398436407134011111410200020020222020000101000000010000005210100000000120011101000000000000000000000000000000000000000000000000000000000000000000623217040312767027178313361002512223212100014172632524150176717612921122860125012351201201536210614331281308003711306434021092000000000000008601020000172000301013022001292535202728427123078585051120001080102020001083619344002899207122678013516311712828351428300240200101007001010100000008651970159975110210258388529102102
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTG.............................................................................................................................................2412828.0028280000000000000000020000000000010000100010001010020000000100000000000021000000010100000010001000011000000000000001100000000000000000000000000000000000000000000000000000000000000000201540001230021130000000002000000100001012616202106073821710220001204301000220001032113002001411011089201320102100000000000000000000000000000000141252106839503050712108125455493228308040000000000000016359594700451015299461002062101151476815141857123610740064736330145103600000001874765001264910138108819839300000
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTAA.............................................................................................................................................2412244.00224400001001200000100001000220111322003792022120131230032000114021303913024000130110601113340031010002200001213100003130001000001000001001000000000010000000000000000000000000001020000007011110101091099011427101302214032220401310000419302617303611032432131462525637857372241210211240100031412110311760574015001221161122187776522961061971011862000000000000400000000300000004525111200000042281116914121000000400003000131200210000000000000000000000000017714702501851297024416870000000000000000000120000000101
.............................................................................................................................................................................................AATCAGCAAGTATACTGCCCT....................................................................................................2112098.002098010001202031033402501000000200011010111021101001000000001000000111000000000000000000001000010000000000000000000000000000000010000000000000000000001000001000000000000000000100001000000000013000004200002003112100000000003043310001101133140400110110000010000000011001000001831133164177600000000000010022040000051000000384200505853520200100305049613657320143040848197113733780372005456395726210709670942101022370001100000000000010000000001316111201100836761101574756380110546
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGA...............................................................................................................................................2221927.5038550100010010200102000400042024201222091422573522134111061280122413911060390660481342065312134314023550060104352163100221080011001001000020100000010213100000210001100003001010000000300000131610222323010119281611021442944260521515535121180103634591684741502472970712021948463691312038001251911253322144173533966111129241312735148005351179750202626574134262018001000100013026732724303210030008611625000000232521324814282114000000120010621045213402300000000000000000000000000141141182214247462244262207484333290000000000000000000280000000112
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTAT.............................................................................................................................................2411904.0019040000100000000000100000010000011110109011301114114041210220340321230201000235001020000013003230031003101030010320200010000001000000100000000000000000002001000000000000001000000000060155000274420181710100113202025131112000022014128142402113214625432628491110110661690703081053122261283010003121515151751464322510420549186000000000000020011000000000100531862300000011251630451729230000000500000001031110700000000000000000000000000138362315111181279129056173628220000000000000000000130000001200
............................................................................................................................................................................................CAATCAGCAAGTATACTGCCC.....................................................................................................2111217.001217000000000000011001200000000000010100300000000000100010010000000000000000000000000000000000000000000000000000000000000000010000000000000000200000000000000000000000001000000000000000010000000100000200101000000000000000101121010100210000160100011000000000000000000000010003110010020000000000000000000110110000500000000100001313121300000000110312325220100003010100120031191240019252119042301320284413010091300000000000000010000000000013101117001311381811262022372220010211
................................................................................................................................................TTGGCAGTGTCTTAGCTGGTTGT...............................................................................................................................................231743.00743000000000000000003000001000010001000020000000001000000020100001010000000000000000000000000000010010000000000100000000000000000000000000000000000000000000000000000000000000000000011041000200100055100000200000000000000031232631201313252410200002002000000000100122003501000310001520143100000000000000010000000020000000255110337700120261240822171620000000000000000040283924007356381110027242226130001250020000102041104001200000001110100014221019001164164100000
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTGT............................................................................................................................................251702.00702000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040211000100010000000000000000000100000001010110000110030000400010000010000101000100012011010001143420073210000000000000000000000000000000120004741001324120021797520000006000001200217141813002332211501000564441362130201312243002212435052246000000090414002217119202169260000000
............................................................................................................................................................................................CAATCAGCAAGTATACTGCCCTT...................................................................................................231596.0059600002030110013621000000110060120300401104000101000000100001000011010100000110101000000100200000000000000000000000000001000001000011000000002000000120020000000000000000001000000001002001023122012520010110105100001100011413353012312237561934010300110000011000016303130200141816311922141091070100000100000093100000060000000015430000000012200002000000001140015061814155859000000000000000000000000000221000201000003132100000000000000000001000000111436
................................................................................................................................................TTGGCAGTGTCTTAGCTGGTTG................................................................................................................................................221586.00586000000000000000101010000000000000000200000000000101010010000011000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021001000100013030010000001000000000101030220311130274112210000001100000012202111020101000000000220011300000000000000010010010040000000321202147430010633312016192125000001000100000000231524120022041611000221417235003163001210011000020210100000000114117004161510001175142000000
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTAA............................................................................................................................................251539.0053900000000010000000000000010001011000000002030231000001300101000105020010000010100000100101010000000001001000021000000000000000001101000100001000000000001000000000000000001000100021001300022130002130000100000000000000002521443032413110414160204503501101420303110020301004443401217199320282261000000000000000000000010000000134020350000005752965710000001010000000111026000000000000000000000000004152102255636301341163000000000000000000020000000000
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.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTCA.............................................................................................................................................24124.00240000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000120000000000000000000000000000000000011000000000000000000000000000000000000000000022000001000000000000000000000000000000000100000000003022001000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000000000000
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTTA...............................................................................................................................................22423.00920000000000000100000000000000000000000000101000000011110000000010200000001210000001000000000000000000100000001000000000000011100000100000000100100000000010000001000000000001000000000000000013000000100000000000000010000110002110000001210500000100210000000001000100000000011000111407320000000010000004101200100000000000000000000010110000000000000000100100000000000000000000000000000000000010000000000000000000000000000000000000000000200
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTTAA...........................................................................................................................................26123.00230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000110101340000000000000000000000000000000001030000000001000100000000000000000000000000000000000000000000000000000100000000000001002000000000000000000000000000000
...................................................................................................................................................GCAGTGTCTTAGCTGGTT.................................................................................................................................................18123.00230000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000080200000000100000000001000000000000001010010001000000000000000000000000000000000000000000000000000000000000001000000002
...............................................................................................................................................................................................TCAGCAAGTATACTGCCCTAG..................................................................................................21122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100020100000000000000000000000002010000001233000000000000000000000000000000000000000013010000000000000
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTGTG...........................................................................................................................................26121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000010000000000001000001132100000000000000000000000000000000000000003010010211000000
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTTTAT...........................................................................................................................................26120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001202011000000000000000000000000000000010010000000002000200000000000000000000000000000000000000000000000000000000001000010011100000000000000000000000000000000
.................................................................................................................................................................................................AGCAAGTATACTGCCCTA...................................................................................................18120.00200000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000010110100000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000100001000000020000010000000000000000010000000001000000000000000000000000000000001000000000001011
................................................................................................................................................TTGGCAGTGTCTTAGCT.....................................................................................................................................................17219.00380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000002000000000000000000040000000040000200200044200000000000000000000000000000000002022000000201120
..............................................................................................................................................................................................ATCAGCAAGTATACTGCCCTAGT.................................................................................................23119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000010000000000000000000000300000100000000000000000000100100000100000000000000000000000001000000001000000001000000000000100001000000000000000002110000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TGGCAGTGTCTTAGCTGGTTGTCT.............................................................................................................................................24119.00190000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000201100100000000000100000000000000000000000000010300000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................CCAGCTGTGAGTGTTTCTT.....................................................................................................................................................................19117.00170000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000001000100000001000000000000000000000000000000000000000000000100001033000000
.....................................................................................................................................................AGTGTCTTAGCTGGTTGTTGG............................................................................................................................................21117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600100000000000000000000000000000000000000000000000000000000000000000000000000000001702
..................................................................................................................................................GGCAGTGTCTTAGCTGGTTGTTAA............................................................................................................................................24117.00170000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010101000000001001110000000000000000000000000000000020000100001001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000000000
panTro4
GAGAGG--------------------CAGGACAGGCCTGTCCCCCGAGTCCCCTC------C-G----------GATGCC-------------------------------------GTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAG-TAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTGGGGCCCAAGAGGGAAGATG--A---AGCGAGAGATGCCCAGA-CCAG-------------TGGGAGACG------CCAGGASizeHit CountTotal NormTotal
No Reads
rheMac3
GAGAGG--------------------CAGGACAGGCCTGTCCCCCGAGTCCCCTC------C-G----------GATGCC-------------------------------------GTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAG-TAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTACACATTGTGGGGCCTGAGAGGGAAGATG--A---GGCGAGAGATGCCCAGA-CCAG-------------TGGGAGACG------CCAGGASizeHit CountTotal NormTotal
No Reads
mm10
GGAGTGTGTCATACCTCGGTAGGGTCCACTACACATCTTTCTCCCGCAGCCTCTCCATCTTC-CTGTGACTGCGGGCGCC-------------------------------------TTGGGCTGGCCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGTTGGGCC-GAGAAGGAAAAG-GTCAGAGGTCAGCAACGCCCACA-CCCC-------------TGAGAGGCG------CT-GGASizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
No Reads
rn5
----------------------------------------------------------------------------------------------------------------------TGGGCCGGCCGGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTTAGGCC-AAGAAGGAA------A---AGTCAGCGATGCCCAGA-CCTC-------------CGAGAGGCG------CCAGGASizeHit CountTotal NormTotal
No Reads
canFam3
GAGAGG--------------------CAGAGCAGGCCTGCCCCCTGAGTCATCGT------CAG------------------------------------------------------------GGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTAATAGTGAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTTGGGCCCAAGAGGGAAGAA-ATA---AGCGAGAGGCGCTCGGAGCCAG-------------CGTGAGACGCCAAAACCAGGASizeHit CountTotal NormTotal
No Reads
monDom5
GAAAAT--------------------TGGGAAAT----TTCTCC----TTTTCTC------C-T----------TGTGTTTAGACCCCAAGAAGATGAGAAGTCAGATCGTGGCAAGGTCGGCTGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTAATAGATAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGTTGTTAGGCCCGTGAAGA----TG----------------GTTGAGA-CCAGCCTGGGAACCCGGCGTTGGACA------CCAGGGSizeHit CountTotal NormTotal
No Reads

Generated: 12/12/2014 at 10:37 AM