ID:

hsa-mir-200a

 Coordinate:

chr1:1167863-1167952 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-45.1 -45.0

Sense Strand Reads

CTGGGCTTCCACAGCAGCCCCTGCCTGCCTGGCGGGACCCCACGTCCCTCCCGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCGCCGCTCGCCGGGGACACCACCGAGGCACATCCGGAGCTCCTACTCCAGGGA
**************************************************.((((..(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).)))...))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139171
kidney		 SRR139173
kidney		 SRR139172
kidney		 SRR139174
kidney		 SRR094132
uterus		 SRR094130
uterus		 SRR191605
breast		 SRR094129
uterus		 SRR553575
Kidney		 SRR094131
uterus		 SRR191602
breast		 SRR139183
lung		 SRR139185
lung		 SRR330921
skin		 SRR330922
skin		 SRR139186
lung		 SRR139214
thymus		 SRR139216
thymus		 SRR139184
lung		 SRR330923
skin		 TAX577579
breast		 TAX577739
breast		 SRR330915
skin		 SRR330907
skin		 SRR191588
breast		 SRR330919
skin		 TAX577740
breast		 SRR139215
thymus		 SRR191598
breast		 SRR139217
thymus		 TAX577744
breast		 SRR040028
cervix		 SRR191628
breast		 SRR191589
breast		 SRR330916
skin		 SRR191590
breast		 SRR191599
breast		 TAX577745
breast		 SRR139188
lung		 SRR191603
breast		 SRR191620
breast		 SRR330908
skin		 SRR330920
skin		 SRR191551
breast		 SRR139208
testes		 SRR330904
skin		 SRR191629
breast		 SRR139210
testes		 SRR039625
liver		 SRR191621
breast		 SRR191604
breast		 SRR191625
breast		 SRR191406
breast		 SRR139209
testes		 SRR191601
breast		 SRR191633
breast		 SRR191422
breast		 SRR139211
testes		 TAX577453
breast		 SRR330912
skin		 SRR330913
skin		 TAX577743
breast		 SRR139191
ovary		 SRR330911
skin		 SRR191393
breast		 SRR191415
breast		 SRR139192
ovary		 SRR191635
breast		 SRR139179
liver		 SRR139194
ovary		 SRR139177
liver		 SRR330917
skin		 SRR039620
liver		 SRR139193
ovary		 SRR191593
breast		 SRR139178
liver		 SRR191626
breast		 SRR191434
breast		 SRR330914
skin		 SRR191624
breast		 SRR040010
cervix		 SRR191607
breast		 SRR191597
breast		 SRR139180
liver		 SRR191622
breast		 SRR330910
skin		 SRR191557
breast		 SRR191591
breast		 SRR330906
skin		 SRR191409
breast		 TAX577742
breast		 SRR191564
breast		 TAX577741
breast		 SRR191412
breast		 TAX577580
breast		 SRR191592
breast		 SRR191573
breast		 SRR191459
breast		 SRR191606
breast		 SRR191587
breast		 SRR191394
breast		 SRR191559
breast		 SRR191566
breast		 SRR191460
breast		 SRR139175
kidney		 SRR191575
breast		 SRR191623
breast		 RoviraIPAgo2
breast		 SRR191565
breast		 SRR191595
breast		 SRR191600
breast		 SRR191436
breast		 SRR191631
breast		 SRR191617
breast		 SRR191414
breast		 SRR191611
breast		 SRR039612
liver		 SRR191469
breast		 SRR191417
breast		 SRR191473
breast		 SRR191612
breast		 SRR191627
breast		 SRR191596
breast		 SRR039615
liver		 SRR040036
cervix		 SRR139176
kidney		 SRR191586
breast		 SRR191399
breast		 SRR191397
breast		 SRR191420
breast		 SRR191552
breast		 SRR191443
breast		 SRR039622
liver		 SRR139187
lung		 SRR191610
breast		 SRR191560
breast		 SRR191461
breast		 SRR191632
breast		 SRR139218
thymus		 SRR039618
liver		 TAX577746
breast		 SRR191614
breast		 SRR191442
breast		 SRR191581
breast		 SRR191432
breast		 SRR191416
breast		 SRR191615
breast		 SRR191454
breast		 TAX577588
breast		 SRR191576
breast		 SRR191577
breast		 SRR039613
liver		 SRR191405
breast		 SRR039619
liver		 SRR191425
breast		 SRR139195
ovary		 SRR191482
breast		 SRR191430
breast		 SRR191449
breast		 SRR191410
breast		 SRR191548
breast		 SRR191400
breast		 SRR139189
lung		 SRR191556
breast		 SRR330909
skin		 SRR191447
breast		 SRR191479
breast		 SRR191404
breast		 SRR191568
breast		 SRR039617
liver		 SRR191418
breast		 SRR191433
breast		 SRR139200
placenta		 TAX577589
breast		 SRR191398
breast		 SRR191408
breast		 SRR139207
spleen		 SRR139201
placenta		 SRR330905
skin		 SRR039616
liver		 SRR139219
thymus		 SRR191451
breast		 SRR191569
breast		 SRR139182
liver		 SRR191421
breast		 SRR191578
breast		 SRR191475
breast		 SRR191438
breast		 SRR191558
breast		 SRR191456
breast		 SRR191485
breast		 SRR191582
breast		 SRR191401
breast		 SRR191562
breast		 SRR191445
breast		 SRR191478
breast		 SRR191407
breast		 SRR191574
breast		 SRR039624
liver		 SRR191455
breast		 SRR191570
breast		 SRR191452
breast		 SRR191453
breast		 SRR191468
breast		 SRR040038
cervix		 SRR191426
breast		 SRR191555
breast		 SRR191444
breast		 SRR191439
breast		 SRR191403
breast		 SRR191464
breast		 TAX577590
breast		 SRR191618
breast		 SRR139190
lung		 SRR191428
breast		 SRR191466
breast		 SRR191492
breast		 SRR191465
breast		 SRR191547
breast		 SRR191571
breast		 SRR139212
testes		 SRR191470
breast		 SRR191471
breast		 SRR191608
breast		 SRR191502
breast		 SRR191441
breast		 SRR191474
breast		 SRR191463
breast		 SRR191567
breast		 SRR040006
cervix		 SRR191538
breast		 SRR191411
breast		 SRR191423
breast		 SRR191402
breast		 SRR039614
liver		 SRR095854
brain		 SRR191427
breast		 SRR040040
cervix		 SRR039611
liver		 TAX577738
breast		 SRR139199
placenta		 SRR191462
breast		 SRR191480
breast		 SRR040012
cervix		 SRR191500
breast		 SRR139206
spleen		 SRR191550
breast		 SRR139181
liver		 SRR191486
breast		 SRR191431
breast		 SRR191495
breast		 SRR191467
breast		 SRR191497
breast		 SRR191508
breast		 SRR139203
spleen		 SRR191509
breast		 SRR191477
breast		 SRR191472
breast		 SRR342895
heart		 SRR191435
breast		 SRR191476
breast		 SRR191546
breast		 SRR191520
breast		 SRR191499
breast		 SRR139205
spleen		 SRR191448
breast		 SRR191504
breast		 SRR191530
breast		 SRR191481
breast		 SRR191521
breast		 SRR139204
spleen		 SRR139197
ovary		 SRR191510
breast		 SRR191594
breast		 SRR191563
breast		 SRR191630
breast		 SRR139202
spleen		 SRR191524
breast		 SRR191540
breast		 SRR191536
breast		 SRR191522
breast		 SRR039623
liver		 SRR191517
breast		 SRR191429
breast		 SRR191491
breast		 GSM532883
cervix		 SRR191506
breast		 SRR191585
breast		 SRR191519
breast		 SRR191396
breast		 SRR191544
breast		 SRR139170
heart		 SRR191419
breast		 SRR191494
breast		 SRR191527
breast		 SRR553572
frontal-cortex		 SRR191554
breast		 SRR191579
breast		 SRR139196
ovary		 SRR191531
breast		 SRR191523
breast		 GSM450602
brain		 GSM450603
brain		 SRR139198
placenta		 SRR191440
breast		 SRR191549
breast		 SRR191487
breast		 SRR191457
breast		 SRR191542
breast		 SRR191545
breast		 SRR191489
breast		 SRR191528
breast		 GSM450608
brain		 SRR191446
breast		 SRR191505
breast		 SRR191511
breast		 SRR191541
breast		 SRR191413
breast		 SRR553576
testes		 SRR342901
heart		 SRR191543
breast		 SRR191580
breast		 SRR191488
breast		 SRR191535
breast		 GSM450609
brain		 SRR015447
breast		 SRR040016
cervix		 SRR553574
heart		 SRR191526
breast		 GSM450604
brain		 SRR191613
breast		 SRR139164
heart		 SRR139168
brain		 SRR191619
breast		 GSM450610
brain		 SRR039621
liver		 SRR040018
cervix		 SRR191514
breast		 SRR191533
breast		 SRR191532
breast		 SRR040014
cervix		 SRR191498
breast		 SRR191572
breast		 SRR139166
heart		 SRR040020
cervix		 SRR139162
brain		 SRR039191
blood		 SRR139165
heart		 SRR191515
breast		 GSM450601
brain		 GSM450598
brain		 SRR191483
breast		 SRR191553
breast		 SRR191395
breast		 SRR191458
breast		 SRR444061
skin		 SRR191503
breast		 SRR342898
heart		 SRR191450
breast		 SRR342894
heart		 GSM450605
brain		 SRR191516
breast		 SRR139167
heart		 SRR342900
heart		 SRR191424
breast		 SRR342896
heart		 GSM450606
brain		 SRR191493
breast		 SRR342897
heart		 SRR191537
breast		 SRR191583
breast		 SRR191512
breast		 GSM450599
brain		 SRR191525
breast		 SRR191584
breast		 SRR553573
cerebellum		 GSM450600
brain		 GSM450607
brain		 SRR139169
heart		 SRR191496
breast		 SRR191539
breast		 SRR444045
skin		 SRR191561
breast		 SRR040032
cervix		 SRR330918
skin		 SRR040024
cervix		 SRR342899
heart		 SRR191529
breast		 SRR191534
breast		 SRR191616
breast		 SRR363674
fibroblast		 GSM450597
brain		 SRR015446
breast		 SRR037876
fibroblast		 SRR015448
breast		 SRR039190
blood		 SRR191437
breast		 SRR191518
breast		 SRR191636
breast		 SRR191513
breast		 SRR444051
skin		 SRR191634
breast		 GSM532871
cervix		 SRR040022
cervix		 SRR191507
breast		 SRR040026
cervix		 GSM532885
cervix		 SRR191501
breast		 SRR444043
skin		 SRR444050
skin		 SRR040030
cervix		 SRR040034
cervix		 SRR363675
fibroblast		 GSM532929
cervix		 GSM532877
cervix		 GSM532887
cervix		 SRR191484
breast		 SRR363676
fibroblast		 SRR444048
skin		 SRR444060
skin
.......................................................................................................TAACACTGTCTGGTAACGATGTT................................................................ 23 0 1 319753.00 319753 34492 29501 17850 15518 2013 1977 9411 1743 3797 1226 5658 3898 3835 6419 4949 1529 1604 1596 1265 4380 4230 3774 3703 3867 3980 3743 3371 1102 3516 917 2416 2899 2096 2775 2927 2229 2926 2133 326 2639 1357 2304 2253 2020 980 2120 2033 883 1444 1800 2035 697 1657 759 2137 1172 1721 623 1912 1710 1778 1181 975 1537 1362 1470 792 744 815 791 844 1397 719 772 1846 884 596 1039 1193 540 1261 1600 1060 707 1357 903 1171 973 949 834 921 1103 811 881 741 1028 736 723 962 945 768 809 761 434 52 687 848 512 881 914 700 773 544 428 575 580 238 577 632 464 667 681 564 395 21 0 651 381 482 468 385 456 182 62 568 499 379 165 76 205 354 463 428 359 454 370 170 378 284 409 366 145 360 223 320 94 163 251 292 353 275 317 207 292 257 156 185 285 252 134 227 214 2 206 235 345 0 3 186 111 0 223 256 0 148 184 169 245 209 208 159 163 202 226 127 92 153 152 71 111 176 130 132 61 8 124 160 116 133 128 88 119 110 0 102 98 121 109 86 103 40 86 60 116 31 79 89 105 105 52 78 91 47 75 50 1 100 0 38 58 0 58 69 48 85 0 61 22 68 54 79 51 65 66 31 50 33 40 37 67 39 48 59 39 32 37 52 42 6 43 23 1 35 36 16 23 14 37 32 30 20 19 30 44 28 30 27 34 17 17 20 0 20 25 15 24 11 17 0 18 15 28 22 0 12 5 2 14 18 16 6 17 19 5 20 18 17 18 19 15 11 8 14 15 18 16 5 9 7 15 12 10 0 12 14 8 9 11 16 15 11 4 6 11 7 5 11 11 4 9 8 2 8 2 3 0 0 9 5 6 8 7 7 8 9 8 7 8 7 5 3 8 8 6 1 7 6 5 0 6 3 1 8 4 4 4 3 0 6 3 5 5 4 2 0 1 3 0 2 3 0 1 2 2 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0
.......................................................................................................TAACACTGTCTGGTAACGATGT................................................................. 22 0 1 287549.00 287549 43705 39324 34212 31566 334 301 3806 217 2166 206 3040 5842 5639 1699 1810 4773 4777 4525 4558 1473 855 699 1185 1429 1471 1405 883 3204 1329 2929 997 897 1805 1626 860 1034 702 487 1111 857 1827 829 830 860 2140 834 623 2072 208 1059 945 1916 1025 2025 835 1293 841 1862 443 686 602 746 1911 570 588 959 1790 1148 1550 1705 1550 505 132 1515 265 1240 909 665 477 1202 278 358 325 1099 374 391 465 436 342 683 208 243 294 472 267 194 388 390 226 360 255 262 364 499 330 235 297 209 129 107 276 224 380 361 267 335 70 114 220 167 153 171 222 58 10 0 148 204 155 190 213 190 47 256 97 175 216 232 314 62 157 137 144 172 102 199 221 58 121 71 101 46 103 56 140 246 93 180 89 123 115 86 78 60 113 195 114 147 134 55 158 105 56 77 93 47 0 64 123 50 0 78 69 0 125 105 79 56 84 40 97 67 26 55 81 98 46 44 12 43 31 63 53 32 11 60 25 46 51 66 39 53 84 0 50 38 43 20 50 38 80 30 50 29 79 67 26 18 27 39 35 32 43 38 12 0 22 3 14 42 12 28 10 35 27 1 23 30 27 34 19 17 22 19 71 10 23 14 27 7 18 14 10 27 51 17 11 19 12 16 41 56 14 12 4 34 28 7 11 6 11 2 7 8 10 7 12 8 17 10 9 0 12 6 5 4 10 9 33 10 9 3 5 6 11 11 16 11 6 8 11 3 2 16 2 5 4 3 9 6 2 7 6 3 1 3 10 3 10 2 9 13 0 8 1 2 7 4 3 4 5 12 3 6 4 6 1 5 7 2 1 8 6 2 2 3 9 5 4 2 1 1 5 2 1 4 2 3 0 1 7 0 0 3 2 0 3 0 0 2 1 2 0 2 0 3 2 0 0 2 0 0 0 0 3 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................TAACACTGTCTGGTAACGATG.................................................................. 21 0 1 60350.00 60350 2439 2104 2141 1940 587 382 1049 331 4473 452 678 571 625 1582 1716 1542 1350 1270 1572 1917 193 87 1618 1183 476 1012 81 1205 174 1024 251 179 597 152 878 641 219 39 481 91 388 804 842 127 579 720 591 587 98 283 133 441 241 534 106 386 98 500 88 673 596 233 204 547 87 111 228 261 195 231 202 601 112 133 61 126 419 90 463 85 58 30 33 105 84 454 35 157 382 80 48 123 100 84 43 58 94 73 76 62 52 71 98 67 166 46 37 392 31 52 30 8 54 127 36 46 37 6 67 18 25 24 68 90 11 156 30 55 26 22 37 18 48 273 2 27 26 124 96 81 37 23 11 83 9 20 116 4 40 14 26 27 28 49 18 119 97 36 22 20 42 6 89 9 117 67 18 26 21 78 37 68 39 26 3 12 0 58 103 57 32 25 26 5 9 15 23 6 16 8 10 22 10 8 13 16 21 15 10 15 7 1 23 58 4 10 1 14 9 5 20 16 22 22 8 4 7 15 7 5 28 12 13 4 44 6 6 5 9 19 21 2 28 7 21 0 5 2 23 15 16 3 13 15 7 1 7 13 4 3 5 4 5 3 4 4 5 3 37 3 5 4 8 8 5 1 3 0 7 5 6 11 2 4 2 3 7 2 1 1 7 4 4 2 4 6 6 1 3 1 5 0 0 3 1 16 4 4 6 1 1 1 0 5 4 3 10 3 3 0 8 1 1 5 0 1 3 1 2 11 0 2 2 2 0 0 2 15 2 0 0 0 0 2 0 3 3 0 0 1 1 5 0 1 2 0 0 0 2 0 1 2 0 0 1 0 5 2 1 3 0 2 0 3 1 2 0 1 1 0 0 1 0 0 1 4 0 0 0 0 0 1 1 0 1 0 3 0 0 3 0 1 0 1 0 0 1 0 0 0 3 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0
.......................................................................................................TAACACTGTCTGGTAACGAT................................................................... 20 0 1 58822.00 58822 1956 1811 1677 1581 14231 8087 256 7242 95 6333 96 374 381 71 68 560 953 854 515 74 63 27 56 41 194 58 20 653 35 592 51 482 124 52 32 92 23 18 649 16 73 26 19 28 202 24 164 172 1039 53 28 77 66 169 23 118 8 156 27 26 29 74 72 12 26 15 74 83 163 85 163 16 627 77 12 126 55 12 19 34 14 14 24 119 10 31 12 24 10 19 20 21 28 11 19 13 19 17 42 9 15 32 34 16 145 16 10 20 13 21 4 4 16 25 4 11 237 3 13 6 9 2 11 210 38 235 8 14 15 5 15 3 262 31 3 1 4 35 81 231 8 3 1 17 2 3 21 2 13 3 7 147 4 197 5 20 19 11 3 2 8 3 30 7 2 4 1 4 6 152 9 13 15 5 2 4 0 27 3 153 178 8 1 12 2 5 2 4 1 2 2 6 2 3 3 2 5 1 65 2 6 2 5 16 3 0 0 1 1 2 0 2 1 78 1 1 2 5 4 1 14 0 4 0 11 8 3 1 4 31 1 0 8 0 31 0 0 0 35 3 5 0 1 13 2 0 0 4 0 4 1 0 4 2 3 1 0 0 1 1 1 0 4 3 2 1 0 1 1 1 5 5 1 0 1 1 13 0 2 1 2 16 1 0 3 7 1 3 0 0 0 1 5 0 0 1 4 1 3 0 1 0 0 0 0 1 3 1 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 2 0 1 0 6 4 0 0 1 2 0 0 1 0 0 0 2 1 0 0 1 0 0 0 7 0 1 0 0 0 1 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 1 0 6 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TAACACTGTCTGGTAACGATGTTT............................................................... 24 1 1 35794.00 35794 0 0 0 0 4172 3704 1730 2733 106 1417 1262 0 0 232 169 0 0 0 0 140 1937 1791 152 127 169 178 949 0 168 0 799 314 79 128 88 150 256 1152 0 311 91 81 80 477 0 85 66 0 532 126 197 49 112 0 57 89 71 0 406 58 87 253 0 62 269 35 0 221 0 0 0 55 538 0 58 0 23 72 72 100 235 49 497 0 27 32 73 52 34 40 309 63 233 42 269 151 89 38 52 25 73 88 24 90 0 110 33 14 94 66 79 44 41 50 99 50 257 31 13 59 100 74 26 124 1 0 23 36 22 22 13 20 144 0 89 39 40 74 0 90 108 37 18 16 34 16 32 95 96 26 20 147 28 46 17 0 5 22 31 13 19 21 0 121 11 9 39 7 17 37 20 13 0 87 20 30 0 0 8 25 0 21 13 0 26 31 7 12 20 14 5 17 7 11 15 4 30 15 77 23 12 3 5 2 1 16 10 7 5 6 9 24 4 0 31 29 2 18 5 30 0 6 6 34 7 2 13 5 1 0 6 23 6 1 19 0 11 0 15 13 0 5 10 1 1 0 4 0 10 9 0 6 8 7 0 13 11 4 0 5 1 1 1 0 0 16 0 4 2 5 0 0 3 12 2 4 0 3 2 1 1 16 10 2 2 0 0 6 4 1 3 0 4 5 2 1 2 1 0 3 3 2 5 0 3 0 0 2 0 1 0 0 3 1 3 4 0 0 0 0 6 1 2 1 5 7 0 0 3 5 3 0 0 0 7 4 0 1 1 1 1 2 4 0 0 0 8 0 0 4 6 0 0 7 0 0 0 0 3 1 6 0 0 0 1 0 5 1 1 1 0 0 1 0 2 0 0 6 0 1 4 0 1 1 0 0 0 1 1 0 0 1 3 0 2 3 2 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAACACTGTCTGGTAACGA.................................................................... 19 0 1 19816.00 19816 913 911 684 695 4640 2292 44 2013 158 1528 26 74 70 70 68 95 342 322 72 57 26 13 59 33 40 40 7 247 13 226 34 10 37 20 39 17 5 16 1346 8 22 23 21 12 41 23 45 27 144 14 11 16 14 51 7 18 2 38 14 23 27 32 21 14 3 9 35 18 41 25 35 16 92 33 0 41 15 6 22 6 4 8 6 41 4 12 4 8 6 11 8 8 7 1 13 6 1 3 10 5 2 8 5 5 256 3 1 23 1 1 4 0 7 8 4 0 44 0 2 1 7 1 0 13 0 210 3 1 2 1 2 0 57 80 0 1 3 8 71 12 3 2 1 2 0 2 6 0 2 2 2 27 0 9 0 32 2 2 0 1 3 0 20 0 1 2 0 1 0 13 0 2 32 2 0 1 0 36 3 11 70 0 1 7 0 3 1 0 2 0 0 2 1 0 0 0 1 0 10 1 0 0 0 5 1 0 0 2 1 1 0 1 0 16 0 0 0 2 2 0 13 0 0 0 3 0 5 0 1 6 0 1 0 0 1 0 0 1 0 0 11 0 0 0 0 0 1 2 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 3 0 2 0 0 3 0 0 0 0 5 0 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAACACTGTCTGGTAAC...................................................................... 17 0 2 13911.00 27822 1196 3636 1776 3550 4584 1844 1 1534 3 1168 0 312 412 4 2 1028 136 226 716 4 10 5 1 1 1 2 8 88 0 328 9 0 1 2 2 0 0 15 382 0 0 2 5 0 624 4 0 832 0 0 0 0 0 306 0 0 0 518 8 0 0 7 36 2 0 0 26 1 246 50 58 1 0 102 0 116 0 0 0 0 0 0 0 224 1 0 0 0 1 0 9 0 3 1 19 0 0 0 0 1 0 0 0 2 368 0 0 1 1 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 246 0 0 0 1 0 0 0 186 0 0 0 0 116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112 0 0 0 1 0 0 234 0 0 0 0 0 0 0 0 0 30 0 0 0 0 28 0 0 50 0 0 14 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 3 0 76 0 0 0 0 0 0 46 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 32 0 0 0 0 0 0 14 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 10 16 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AACACTGTCTGGTAACGATGTT................................................................ 22 0 1 8921.00 8921 543 479 303 302 82 86 441 62 19 64 289 69 95 35 27 50 38 42 37 23 38 46 25 26 234 18 26 29 196 30 28 8 84 195 11 138 149 35 0 111 63 20 16 123 14 7 83 18 32 95 99 29 178 21 101 38 53 23 26 9 7 19 22 6 92 104 12 30 28 10 19 9 12 15 91 27 23 39 4 28 2 89 51 17 58 4 52 54 10 51 10 61 12 57 15 45 60 23 52 54 65 38 28 23 3 64 37 1 48 45 38 26 25 19 49 34 14 28 50 12 27 17 45 10 0 0 41 43 51 10 27 14 6 1 30 22 15 8 2 1 3 30 13 17 16 24 3 20 2 37 33 8 37 8 8 2 3 6 13 20 17 27 7 12 3 5 10 31 18 9 12 15 0 9 21 24 0 0 0 2 0 6 16 0 8 19 6 7 10 8 8 13 19 6 9 2 13 10 0 3 11 10 3 2 0 6 6 4 8 7 0 0 1 0 6 5 7 4 6 13 0 1 3 9 0 7 5 4 9 0 5 10 1 6 1 4 4 0 2 0 0 4 1 1 1 0 2 1 5 2 4 3 4 4 1 5 1 2 0 3 2 2 1 2 0 5 3 1 0 0 0 0 1 1 1 0 0 0 1 1 2 1 0 0 1 0 1 1 0 4 0 0 3 1 2 0 0 4 0 0 0 0 0 0 2 2 1 0 1 0 1 1 1 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.......................................................................................................TTACACTGTCTGGTAACGATGTT................................................................ 23 1 1 41.00 41 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 6 0 0 0 1 0 3 0 4 3 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAACACTGTCTAGTAACGATGTTT............................................................... 24 2 1 41.00 41 0 0 0 0 1 0 6 1 0 0 3 0 0 0 1 0 0 0 0 0 1 4 0 0 0 1 0 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAACAATGTCTGGTAACGATG.................................................................. 21 1 1 41.00 41 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 4 0 0 0 0 2 0 0 1 0 0 0 0 0 3 0 0 1 0 2 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATCTAACACTGTCTGGTAACGATGT................................................................. 25 1 1 40.00 40 0 0 0 0 0 0 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AACACTGTCTGGTAACGCTGTT................................................................ 22 1 1 40.00 40 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GACCCGAAGGTGTCGTCGGGGACGGACGGACCGCCCTGGGGTGCAGGGAGGGCCCGGGGACACTCGTAGAATGGCCTGTCACGACCTAAAGGGTCGAACTGAGATTGTGACAGACCATTGCTACAAGTTTCCACTGGGCGGCGAGCGGCCCCTGTGGTGGCTCCGTGTAGGCCTCGAGGATGAGGTCCCT
*************************************************.((((..(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).)))...))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039619
liver		 SRR039625
liver		 SRR191588
breast		 SRR139185
lung		 TAX577580
breast		 SRR139186
lung		 TAX577579
breast		 SRR039190
blood		 SRR039621
liver		 SRR094129
uterus		 SRR094131
uterus		 SRR094132
uterus		 SRR139174
kidney		 SRR139177
liver		 SRR139178
liver		 SRR139184
lung		 SRR139198
placenta		 SRR139199
placenta		 SRR139200
placenta		 SRR139204
spleen		 SRR139209
testes		 SRR139211
testes		 SRR139215
thymus		 SRR191620
breast		 SRR330923
skin		 SRR330922
skin		 SRR330919
skin		 SRR330908
skin		 SRR330911
skin		 TAX577589
breast		 RoviraIPAgo2
breast		 SRR330918
skin		 SRR330916
skin		 SRR330905
skin		 SRR330915
skin		 SRR040038
cervix		 SRR330906
skin		 SRR342900
heart		 TAX577742
breast		 SRR330913
skin		 SRR444045
skin		 SRR039613
liver		 SRR095854
brain		 SRR330904
skin		 SRR330914
skin		 SRR342894
heart		 SRR342895
heart		 SRR342898
heart		 TAX577744
breast
...............................................................TCGTAGAATGGCCTGTCACGAC......................................................................................................... 22 0 1 37.00 37 21 2 2 2 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTAGAATGGCCTGTCACGAC......................................................................................................... 20 0 1 8.00 8 1 5 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CGTAGAATGGCCTGTCACGAC......................................................................................................... 21 0 1 7.00 7 5 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TTGTGACAGACCATTGCTACA................................................................. 21 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTAGAATGGCCTGTCACGA.......................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GATTGTGACAGACCATTGCTAC.................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GATTGTGACAGACCATTGCTACA................................................................. 23 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTAGAATGGCCTGTCACG........................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTCGTAGAATGGCCTGTCACGAC......................................................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGTGTAGGCCTC............... 12 0 20 1.10 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTAGAGTGGCCTGTCACGAC......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTTGTGACAGACCATTGCTACAA................................................................ 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CGTAGAGTGGCCTGTCACGAC......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GAATGGCCTGTCACGAC......................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GCCTGTCACGACCTA...................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTCGAATGGCCTGTCACGA.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................ATTGTGACAGACCAT........................................................................ 15 0 7 1.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AGAATGGCCTGTCACGAC......................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATCGTAGAATGGCCTGTCACGAC......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATCGTAGAATGGCCTGTCACGA.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTAGAATGGCCTGTCCCGAC......................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGATTGTGACAGACCATTGCTA................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TAGAATGGCCTGTCACGAC......................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTCTCGTAGAATGGCCTGTCACGA.......................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGTGACAGACCATTGCTACA................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTCGCATGGCCTGTCACGAC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CTCGTAGAATGGCCTGTCACGAC......................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGTGTAGGCCT................ 11 0 20 0.50 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGGCCCGGGG................................................................................................................................... 10 0 20 0.50 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTAGAATGGCCTGTCACAAT......................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CAAGTTGCCAATGGGCG.................................................. 17 2 12 0.33 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTGTGGTGGCTCCGAGAGGGCCT................ 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGGGCGGCGAGCCGCCCCTG.................................... 20 2 10 0.20 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCTTAGAATGGCCAGTCACTAC......................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGTGTAGGCCTCGAGTATGTCGT.... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTAGAATGGTCTGTCACAAC......................................................................................................... 20 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTAGAAGGGCATGTCAAGAC......................................................................................................... 22 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CTCGAGGATGA....... 11 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CAAGTTGCCAATGGGCGC................................................. 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................CGTGTAGGCC................. 10 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGGGGTGCAGGGAGG........................................................................................................................................... 15 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CACCAGGCGGCGAGCGGC......................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGGCGGCGAGCGGC......................................... 14 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGCTCCGTGTGGGCCCCGAGG........... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................CGTGTAGGCCTCGAGT........... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................GTAGGCCTCGA............. 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................CGGCCGCTGTGCTGGCT............................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CCTGGGGTGC.................................................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GGCGGCGAGCGGC......................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GCGAGCGGCC........................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................GTGGAAGCACCGTGTAGGCC................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATCGCTACATGTTTCCACTA...................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................GCGGCCCCTGTG.................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
hg38 chr1:1167813-1168002 + hsa-mir-200a CTGGGCTTCC--ACAGCAGCCCCTGCCTGCCTGGCGGG-----ACCCCACGTCCCTCC------------------------------CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCGCCGCTCGCC-----GGGGACA--CCACCGAGGC-ACATCCGGA---------------------------------GCTCCT--ACTCCAGgga
panTro4 chr1:1088651-1088840 + CTGGGCTTCC--ACAGCAGCCCCTGCCTGCCTGGCGGG-----ACCCCACGTCCCTCC------------------------------CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCGCCGCTCGCC-----GGGGATG--CCACCGAGGC-ACGTCCGGG---------------------------------GCTCCT--ACTCCAGGGA
rheMac3 chr1:4385756-4385945 + CTGGACTTCC--ACAGCAGCCCCTGCCTGCCTTGAGGG-----ATCCCATGTCCCTCC------------------------------CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCACCGCTCGCC-----GGAGACC--CCACCGAGGC-ACGTCCGGA---------------------------------GCTCCT--ACTCCAGAGA
mm10 chr4:156054845-156055036 - mmu-mir-200a CTGGGCCTCCCTGA---------------------GGGTGGAAACCAC--------------CTGTGTCTTCCTGCCAGAGCAT-ACCTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCACCATTCGCC-----GAAGACAGGCTGATGATAC-ACACT------------------------------TGT----CCTCCTGGACTCCAG--T
rn5 chr5:176963332-176963537 - CTGGGCCCCCCTGA---------------------GGGTGGAAACCACATATCCTGC----TCTGTGTCTTCCTACCAAAGCAT-ACCTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCAACACTCGCC-----GAAGACAGGCTGATGATAC-ACACT------------------------------TGTCTTAGCTCCTGGACTCCAG--A
canFam3 chr5:56369027-56369212 + CCAG------------AAGTCTGTCCCTG--------------------------------------TCCTCGGGCCGAGGCGC-ACCTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCACTGCCTGCCCACCAGGAAGCAGCCCGAGGACACCCCGTCCTGA---------------------------------GCTCTTGGCCTCCACAGA
monDom5 Unknown CGGGGCCTCT--GAGG-AACCCAGGAACGCAGCAAGGG-----CATCCACGCCGCTCCAGCC-------------CCATGGCATGACGTGGGCCTCTGTGGGCATCTTACTAGACAGTGCTGGATTT-TTGGATGTACTCTAACACTGTCTGGTAACGATGTTTAAAGAGGGAACCCAACCCCAGCA-----GGTG----------------CCGCCCTGAGCTGCTGACTCAGCGCTCCAGCTGAGTGCCTCAG-------TTTCCCTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
hg38
CTGGGCTTCC--ACAGCAGCCCCTGCCTGCCTGGCGGG-----ACCCCACGTCCCTCC------------------------------CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCGCCGCTCGCC-----GGGGACA--CCACCGAGGC-ACATCCGGA---------------------------------GCTCCT--ACTCCAGggaSizeHit CountTotal NormTotalSRR039190
blood		SRR039191
blood		GSM450597
brain		GSM450598
brain		GSM450599
brain		GSM450600
brain		GSM450601
brain		GSM450602
brain		GSM450603
brain		GSM450604
brain		GSM450605
brain		GSM450606
brain		GSM450607
brain		GSM450608
brain		GSM450609
brain		GSM450610
brain		SRR095854
brain		SRR139162
brain		SRR139168
brain		RoviraIPAgo2
breast		SRR015446
breast		SRR015447
breast		SRR015448
breast		SRR191393
breast		SRR191394
breast		SRR191395
breast		SRR191396
breast		SRR191397
breast		SRR191398
breast		SRR191399
breast		SRR191400
breast		SRR191401
breast		SRR191402
breast		SRR191403
breast		SRR191404
breast		SRR191405
breast		SRR191406
breast		SRR191407
breast		SRR191408
breast		SRR191409
breast		SRR191410
breast		SRR191411
breast		SRR191412
breast		SRR191413
breast		SRR191414
breast		SRR191415
breast		SRR191416
breast		SRR191417
breast		SRR191418
breast		SRR191419
breast		SRR191420
breast		SRR191421
breast		SRR191422
breast		SRR191423
breast		SRR191424
breast		SRR191425
breast		SRR191426
breast		SRR191427
breast		SRR191428
breast		SRR191429
breast		SRR191430
breast		SRR191431
breast		SRR191432
breast		SRR191433
breast		SRR191434
breast		SRR191435
breast		SRR191436
breast		SRR191437
breast		SRR191438
breast		SRR191439
breast		SRR191440
breast		SRR191441
breast		SRR191442
breast		SRR191443
breast		SRR191444
breast		SRR191445
breast		SRR191446
breast		SRR191447
breast		SRR191448
breast		SRR191449
breast		SRR191450
breast		SRR191451
breast		SRR191452
breast		SRR191453
breast		SRR191454
breast		SRR191455
breast		SRR191456
breast		SRR191457
breast		SRR191458
breast		SRR191459
breast		SRR191460
breast		SRR191461
breast		SRR191462
breast		SRR191463
breast		SRR191464
breast		SRR191465
breast		SRR191466
breast		SRR191467
breast		SRR191468
breast		SRR191469
breast		SRR191470
breast		SRR191471
breast		SRR191472
breast		SRR191473
breast		SRR191474
breast		SRR191475
breast		SRR191476
breast		SRR191477
breast		SRR191478
breast		SRR191479
breast		SRR191480
breast		SRR191481
breast		SRR191482
breast		SRR191483
breast		SRR191484
breast		SRR191485
breast		SRR191486
breast		SRR191487
breast		SRR191488
breast		SRR191489
breast		SRR191490
breast		SRR191491
breast		SRR191492
breast		SRR191493
breast		SRR191494
breast		SRR191495
breast		SRR191496
breast		SRR191497
breast		SRR191498
breast		SRR191499
breast		SRR191500
breast		SRR191501
breast		SRR191502
breast		SRR191503
breast		SRR191504
breast		SRR191505
breast		SRR191506
breast		SRR191507
breast		SRR191508
breast		SRR191509
breast		SRR191510
breast		SRR191511
breast		SRR191512
breast		SRR191513
breast		SRR191514
breast		SRR191515
breast		SRR191516
breast		SRR191517
breast		SRR191518
breast		SRR191519
breast		SRR191520
breast		SRR191521
breast		SRR191522
breast		SRR191523
breast		SRR191524
breast		SRR191525
breast		SRR191526
breast		SRR191527
breast		SRR191528
breast		SRR191529
breast		SRR191530
breast		SRR191531
breast		SRR191532
breast		SRR191533
breast		SRR191534
breast		SRR191535
breast		SRR191536
breast		SRR191537
breast		SRR191538
breast		SRR191539
breast		SRR191540
breast		SRR191541
breast		SRR191542
breast		SRR191543
breast		SRR191544
breast		SRR191545
breast		SRR191546
breast		SRR191547
breast		SRR191548
breast		SRR191549
breast		SRR191550
breast		SRR191551
breast		SRR191552
breast		SRR191553
breast		SRR191554
breast		SRR191555
breast		SRR191556
breast		SRR191557
breast		SRR191558
breast		SRR191559
breast		SRR191560
breast		SRR191561
breast		SRR191562
breast		SRR191563
breast		SRR191564
breast		SRR191565
breast		SRR191566
breast		SRR191567
breast		SRR191568
breast		SRR191569
breast		SRR191570
breast		SRR191571
breast		SRR191572
breast		SRR191573
breast		SRR191574
breast		SRR191575
breast		SRR191576
breast		SRR191577
breast		SRR191578
breast		SRR191579
breast		SRR191580
breast		SRR191581
breast		SRR191582
breast		SRR191583
breast		SRR191584
breast		SRR191585
breast		SRR191586
breast		SRR191587
breast		SRR191588
breast		SRR191589
breast		SRR191590
breast		SRR191591
breast		SRR191592
breast		SRR191593
breast		SRR191594
breast		SRR191595
breast		SRR191596
breast		SRR191597
breast		SRR191598
breast		SRR191599
breast		SRR191600
breast		SRR191601
breast		SRR191602
breast		SRR191603
breast		SRR191604
breast		SRR191605
breast		SRR191606
breast		SRR191607
breast		SRR191608
breast		SRR191609
breast		SRR191610
breast		SRR191611
breast		SRR191612
breast		SRR191613
breast		SRR191614
breast		SRR191615
breast		SRR191616
breast		SRR191617
breast		SRR191618
breast		SRR191619
breast		SRR191620
breast		SRR191621
breast		SRR191622
breast		SRR191623
breast		SRR191624
breast		SRR191625
breast		SRR191626
breast		SRR191627
breast		SRR191628
breast		SRR191629
breast		SRR191630
breast		SRR191631
breast		SRR191632
breast		SRR191633
breast		SRR191634
breast		SRR191635
breast		SRR191636
breast		SRR191637
breast		TAX577453
breast		TAX577579
breast		TAX577580
breast		TAX577588
breast		TAX577589
breast		TAX577590
breast		TAX577738
breast		TAX577739
breast		TAX577740
breast		TAX577741
breast		TAX577742
breast		TAX577743
breast		TAX577744
breast		TAX577745
breast		TAX577746
breast		SRR553573
cerebellum		GSM532871
cervix		GSM532873
cervix		GSM532875
cervix		GSM532877
cervix		GSM532879
cervix		GSM532881
cervix		GSM532883
cervix		GSM532885
cervix		GSM532887
cervix		GSM532889
cervix		GSM532929
cervix		SRR040006
cervix		SRR040008
cervix		SRR040010
cervix		SRR040012
cervix		SRR040014
cervix		SRR040016
cervix		SRR040018
cervix		SRR040020
cervix		SRR040022
cervix		SRR040024
cervix		SRR040026
cervix		SRR040028
cervix		SRR040030
cervix		SRR040032
cervix		SRR040034
cervix		SRR040036
cervix		SRR040038
cervix		SRR040040
cervix		SRR040042
cervix		SRR037876
fibroblast		SRR363673
fibroblast		SRR363674
fibroblast		SRR363675
fibroblast		SRR363676
fibroblast		SRR553572
frontal-cortex		SRR139164
heart		SRR139165
heart		SRR139166
heart		SRR139167
heart		SRR139169
heart		SRR139170
heart		SRR342894
heart		SRR342895
heart		SRR342896
heart		SRR342897
heart		SRR342898
heart		SRR342899
heart		SRR342900
heart		SRR342901
heart		SRR553574
heart		SRR139171
kidney		SRR139172
kidney		SRR139173
kidney		SRR139174
kidney		SRR139175
kidney		SRR139176
kidney		SRR553575
Kidney		SRR039611
liver		SRR039612
liver		SRR039613
liver		SRR039614
liver		SRR039615
liver		SRR039616
liver		SRR039617
liver		SRR039618
liver		SRR039619
liver		SRR039620
liver		SRR039621
liver		SRR039622
liver		SRR039623
liver		SRR039624
liver		SRR039625
liver		SRR139177
liver		SRR139178
liver		SRR139179
liver		SRR139180
liver		SRR139181
liver		SRR139182
liver		SRR139183
lung		SRR139184
lung		SRR139185
lung		SRR139186
lung		SRR139187
lung		SRR139188
lung		SRR139189
lung		SRR139190
lung		GSM379266
ovary		SRR139191
ovary		SRR139192
ovary		SRR139193
ovary		SRR139194
ovary		SRR139195
ovary		SRR139196
ovary		SRR139197
ovary		SRR139198
placenta		SRR139199
placenta		SRR139200
placenta		SRR139201
placenta		SRR330904
skin		SRR330905
skin		SRR330906
skin		SRR330907
skin		SRR330908
skin		SRR330909
skin		SRR330910
skin		SRR330911
skin		SRR330912
skin		SRR330913
skin		SRR330914
skin		SRR330915
skin		SRR330916
skin		SRR330917
skin		SRR330918
skin		SRR330919
skin		SRR330920
skin		SRR330921
skin		SRR330922
skin		SRR330923
skin		SRR444043
skin		SRR444045
skin		SRR444048
skin		SRR444050
skin		SRR444051
skin		SRR444060
skin		SRR444061
skin		SRR139202
spleen		SRR139203
spleen		SRR139204
spleen		SRR139205
spleen		SRR139206
spleen		SRR139207
spleen		SRR139208
testes		SRR139209
testes		SRR139210
testes		SRR139211
testes		SRR139212
testes		SRR139213
testes		SRR553576
testes		SRR139214
thymus		SRR139215
thymus		SRR139216
thymus		SRR139217
thymus		SRR139218
thymus		SRR139219
thymus		SRR094129
uterus		SRR094130
uterus		SRR094131
uterus		SRR094132
uterus
............................................................................................................................................TAACACTGTCTGGTAACGATGTT.............................................................................................................231319753.003197531115886928221587519181415051241601362768217482235381317202751282853601657153345834353918811857514703706322272046814817214793201241001024425154454214103967773324513312794284561161275156372925223130132378111208143723434379581058810998516157786604046489169393392185696163211596821460281218257966543985031052202716650351883114730017594320153767151704218151661530578332171811201648862755612020385811160292117120980949982261611038817611052522561761036736152687409366184178359163313465194539802775222997310281846369145641060351629267002137565826392035941196216001160568580667124631703428110121357180013578485406975966812096203323544165117217442019124230741284206119583774337181192111812416213335472000003010015201261481159724028990402180020511241011117006378793815934492178502950115518520379738238145503951111342052237198182197114448448848157072203898126538351529623262070097579277279194010023212018694938672304257903153717101778119337032927139743743225364194949438001000001431233200980759883623400191604110215969177601743197712262013
............................................................................................................................................TAACACTGTCTGGTAACGATGT..............................................................................................................221287549.002875490101032352120211060209033588255210155932048626386614710310254647683123324723267959199220158121901258414311406022508180341021056657224056511167144190468116195178947863535843401123904992162818392038173211430501416726791823981141012938097271661101043361922212272707991121211910145004717017101611973105301910430361351114629814501151123860213610256046584262175055424312936427134693138338844235711011059717267728148360147116261034436194265121072223251329702276835304085794538062263582909733515391372212361848182710593742971202191690917118056233438023212931114810443855267121775342699883294208746997487157010010070000390278355107403089702010113000000413565002274052263437053421239324315663300216614704612585055625613224721220815501240155010993005842455856394773256111178001911179015151705246335661256648341233421429829113391570686602477118586050501405830169918101473020000328714151102140202520721862800947773204452529293140217301206334
............................................................................................................................................TAACACTGTCTGGTAACGATG...............................................................................................................21160350.00603500011000100000100000392000875201263556107526282412112802028413611120673702299828118105823639689038169461118141356712212512341583173672635201544586121331862355161813797201041028047135055871445306134211002240385712021100110021021013305047423712737041935167127182123319892126750941546142615428322011306247615264115758614526833174219301066789113310497630402462502311631272223882838437854414192459759135412438602610088193434026161587811004823325139374100000600001905815123200017910011420100001600100033721233111524392141210419401661564473233727219057788149112348410982021261951051355711572625154227348189220204228133231119611516395872010338211838041174545476735964631618878601110128421582171619170110300746510579534587500280213501205127010249632331382452587
............................................................................................................................................TAACACTGTCTGGTAACGAT................................................................................................................20158822.0058822000000000000050000020000261500152143202446654192011041531395528805001011421312140410813130413082522210171640105101630406321021111910203000320011403211100010211000011100412100000010100010102000000481028150407121321031211334461610191163751017611389194529224131202111243523423961628256421400311903210251173531010347755212416411635118083002763191352327202820745118800000007000031014132340121482110383000000012210010102101001956167718111581145235953523714731210153152231197627626216651039163126163119412374515381560316493078072747785203505152724310412623112262919563216058197168740600007133520020216917215614009536538545928117872428087633314231
............................................................................................................................................TAACACTGTCTGGTAACGATGTTT............................................................................................................24135794.00357943816104255656357000143722697371222036217167281123030401323420993516132042226716117161131222934137254421253218207151916313213595231420389040559182962316645913711143910250051002002215018201070030071334011001004151330320143111111642006311519044771302101217320883911126394241171312304891511026203111161702623251691281505215158126626497168256795712623111971730524934089501003373205040911262733100492374796644174892221004061937269968724131791949233309253799115210800000000000000235110000003140101100000001000000100100000000000106152571471912425379046538414416775320000000000000000000000000085834127811132625887721528855017880232169140000000000000000000000000002733370414174172
............................................................................................................................................TAACACTGTCTGGTAACGA.................................................................................................................19119816.001981600000000000001000002300032102010101101411111110492200102000000020026000010010200200000001000353000201500001510000012000000000000000000031002001000000000110000000000000000000000000023011220000428100081510100010322300220003540201786021061354726811441080000702608002214416161513745078180180014261322101377832341630000000000006040101000010000011000000000110100020000191368491169525621015804427113111312992157510144354141412774727095801346201602135332532030113236233633231121423272259391604021706857000200031110041512738130234224732222671702013229215284640
............................................................................................................................................TAACACTGTCTGGTAAC...................................................................................................................17213911.002782200000000000000000001000000000000000000001010000100100000000000000000000000100000000000000020000000000102000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000001120000000000000001000000000000000010000010000001008101900325839791500000000000000000000000000000000000000402200000000000119617763636355036824630000000000000005811624622414143127164121028186382234760362610250112416032302840112002000121025424000000041210800624306832518460013688226328116501534184411684584
.............................................................................................................................................AACACTGTCTGGTAACGATGTT.............................................................................................................2218921.00892100000000000001004001000926534512143271967313717813245120105714910424501231085311864606216153932607827131449055130610320380023231544045322813212562121010300851010170141402100031104511101000001020001210100000105011110026172212327006125210382206161482891816111306010643733194017130114154234195138544591145455119614938101289111994415289903034270303019106395583728292317848302583803000263815290046261210192835300000000000000210020000800000000000000000000000000005433034793023019214811029181216103219272817106937955010700221215102000000701026203469742511901816352723000000001000014211823000382942302062866482
............................................................................................................................................TAACACTGTCTGGTAACGATGTTA............................................................................................................2416271.0062710101010410100000000901045351164994022427217611111485261710170054040315213012022109804020803029620010123011152143011011112310400220000060000100000020101401000000100101000000000000000000010000000171011111021211040142380710401334502102211148593637764001015366236819235432519883750146130147015102422761714961815074601700134180281481340922943625015021116000000000000004810102000103000000010300000000001100000000000017672815133148136600200614200000000000000000000000000678341838842854736748176125570170883142011800000000000000000000000000091672492
............................................................................................................................................TAACACTGTCTGGTAACG..................................................................................................................1816157.006157000000000000000000080001000001000000200000000101000100000000100100100000000100000000000001000000000000000000000001000000001000000000000000000000000000000000000000000000000000000010002000010100002010000000000010000000002230000001121020072000000010000020130220520002010056311002242664100000000000040200000000600000000000000102010100000007041891082332221187320132001632806031616311846966949824458410221902172313110305199600106041511572059914170000000231310154417471200613299575039301365200774
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....................................................CCCTCC------------------------------CGGGCCCCTGTGAG..........................................................................................................................................................................20159.00590000000000000000000000000000000101000000001001000000000000000000000000000000010001000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000003410100100001001000000000000000000000000100001801000502300000101000000000000000000100000000000000000000000000000000000000000004000000000000000000000000000010000010000000000000000000000101000000000000000000000000001000000300000000000000003000000000000000
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..................................................................................................................................................TGTCTGGTAACGATGTT.............................................................................................................17152.00520000000000000000000000001000200100000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202510000101000011000000000000000000000000400100206110201430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020220000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000
.............................................................................................................................................AACACTGTCTGGTAACGATGTA.............................................................................................................22150.00500000000000000000000000000000001000001010000010100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100100001011010000102002101100000000000000110000110200000000011000020101200000000000000000000000000000000000000000000000000000000000012100010000000000000000000000000000000000000000000010100000101000000000000000000000000002004
..............................................................................................................................................ACACTGTCTGGTAACGATGTTA............................................................................................................22148.004800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000110000000110004011000000000001000010000000000001000000000120350100000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000001000020100000000000000000000000000013110
............................................................................................................................................TAACACTGTCTGGTAACGATGTAG............................................................................................................24148.00480000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000010000000000000001000000000000010030202210000000000000001000000000000000000000000000000000000000000020000000000000000000000000000000000000000032131001110150110014000000000000000000000000000200
.....................................................CCTCC------------------------------CGGGCCCCTGTGAG..........................................................................................................................................................................19143.00430000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000021020000000000000000000000000000000000001401000000100100500000000000000000000000000000000000010010000000000000000000000100000001000000000000000000000000000020110020000000000000000101000000000000000000000000000000010000000000000000000000001000003121000000
panTro4
CTGGGCTTCC--ACAGCAGCCCCTGCCTGCCTGGCGGG-----ACCCCACGTCCCTCC------------------------------CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCGCCGCTCGCC-----GGGGATG--CCACCGAGGC-ACGTCCGGG---------------------------------GCTCCT--ACTCCAGGGASizeHit CountTotal NormTotal
No Reads
rheMac3
CTGGACTTCC--ACAGCAGCCCCTGCCTGCCTTGAGGG-----ATCCCATGTCCCTCC------------------------------CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCACCGCTCGCC-----GGAGACC--CCACCGAGGC-ACGTCCGGA---------------------------------GCTCCT--ACTCCAGAGASizeHit CountTotal NormTotal
No Reads
mm10
CTGGGCCTCCCTGA---------------------GGGTGGAAACCAC--------------CTGTGTCTTCCTGCCAGAGCAT-ACCTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCACCATTCGCC-----GAAGACAGGCTGATGATAC-ACACT------------------------------TGT----CCTCCTGGACTCCAG--TSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
............................................................................................................................................TAACACTGTCTGGTAACGATGTT.............................................................................................................231221106.002211069288591011101028778100000000042920127144356019315626223394655361300100191275913046321114611710484291231511510033537572147414081692137841084377657911002116317470014680005502103010012510292064322625933147911704132553318482798372830217282101515102810210410157146822852337710913922088146774810016184309712161119000240114781007545475129354411929215943789032000000051761621221382836
............................................................................................................................................TAACACTGTCTGGTAACGATGT..............................................................................................................22171974.007197422104232629334100000000041120122136298253581629497287310000302817448323519018759126153965249285541481491492613041281392442629640011102000223600202000013011897867989006459666013681267132038252116263701469073413380610113314441326680811430620755572512874421109321140001801120106484072061075463624196268500000002493235726385
............................................................................................................................................TAACACTGTCTGGTAACGATGTTA............................................................................................................24132356.0032356021000133521000000000002423823117211718110000000504009608015264152013513012315526841626176199901425200001000019100000000000046188027367423733568420209811334744195399362003201010261421226947658552000011030001200530300310005312530846730000000018427665
............................................................................................................................................TAACACTGTCTGGTAACGATGTTT............................................................................................................24128711.0028711424703073040000000000000171562053720110400000002931501413308037131483226228300121698771713452850000000000150010000000000030669003291615981120990168386231588752139629525151051213002716210121117213171501123021526000220030100030000612324674221500000000619105388229
............................................................................................................................................TAACACTGTCTGGTAACGATG...............................................................................................................21110552.0010552131000000200000000000004118154278007202761360231021223440112133010103731297847863282115132018218800010000014300030120011305693875114013231287301913104825107222621710010610573413271591047773220959020286220004801000027103000320174215190374700000001522107105
.............................................................................................................................................AACACTGTCTGGTAACGATGTTA............................................................................................................2318459.0084590000000010000000000000010310000100000001100170603148000000401211728199174163354500000000013400000000000015731867125892010431162824124312218534203000000010151062882315312000000000200000000000001921111110000000013204623
............................................................................................................................................TAACACTGTCTGGTAACGAT................................................................................................................2017485.0074857161020000200000000000001913730010011161600120001000044234100140591014164645731740114136640000000004118001000000000801711551027337260010002257223762151325000120014354341841154302079061102900026000000034200229164112131000000031232812
.............................................................................................................................................AACACTGTCTGGTAACGATGTT.............................................................................................................2214423.00442300000010000000000000000131340255000012200000033130654246140100110102136131302712105771300000000064000000000200589624612423376613601501001265124310001000102010055621928100000000030004000000222000071332470000000002021510
............................................................................................................................................TAACACTGTCTGGTAACGATGTA.............................................................................................................2312771.002771000000040300000000000005012100000045200000014010102110010201026311239211130000000001920000000001005153513351902556312512010012125441001101000042255826022730490003170002000000010000060501210000000002102914
.............................................................................................................................................AACACTGTCTGGTAACGATGTTT............................................................................................................2311982.0019820010000000000000000000010200000000000000000010000000000100000251020362300110000000001230000000000002344422031771007833030010223212001100020011021618921210140001020003000000000000042100010000000001100916
............................................................................................................................................TAACACTGTCTGGTAACGATGTAA............................................................................................................2411774.00177400000000020000000000000100000000000010000001330000100000000009534720223000000000440000000000004032402241321546502061100203180000000000002034917016610040000000000000000000000020100000000000000001715
............................................................................................................................................TAACACTGTCTGGTAACGATGTTAT...........................................................................................................2511280.001280010000000100000000000000000000000000000000000000001400000020063764685178900000000001300000000000019037115710012114201491032001310000000000010051310000000000000000060000000000000000000000000000011
............................................................................................................................................TAACACTGTCTGGTAACGATGTTC............................................................................................................2411051.00105100000000001000000000000000000000000100000000100000130000000106101212138100100000000013000000000000199256183109160711130000102200000000000001051114100000000000010000000000000100220000000000010012
......................................................................................................CATCTTACCGGACAGTGCTGGA....................................................................................................................................................221928.009280000000001200000000000000210010000521000000002100614174032003304226247681114600000010002000000001000293225272642261000100111080000023200034412803157110010000100000011000000000502311172330000000020040
............................................................................................................................................TAACACTGTCTGGTAACGA.................................................................................................................191869.00869200110000000000000000009122101000011161100010010210641331402202910026283914273930000000000180001000000000431361168100000200112150610320002008972537181017011211000100000000340100130122194100000000000199
............................................................................................................................................TAACACTGTCTGGTAACGATGA..............................................................................................................221787.0078700000030030000000000000410310010000129000001000001002000001631012010000540010000002300000000000058314044632311300000632625000000002007431211331120124000400000400000000000005021136000000000000121
............................................................................................................................................TAACACTGTCTGGTAACGATGTTG............................................................................................................241693.0069300000000000000000000000500510101010950000000000000010000011302162517171100000000000150000000000001241459450511030001000201400000000000000053540000000000000000020000000000000000300000000010012
.............................................................................................................................................AACACTGTCTGGTAACGATGT..............................................................................................................211496.004960000000000000000000000013245200100009200000000010106710000199100055323040000100001100001000000051425834161430000000421621000000000012910640450000000000000000000006331000000011000000000000115
......................................................................................................CATCTTACCGGACAGTGCT.......................................................................................................................................................191467.0046701100000000000000000000000000000000000000000000000010000000001030002322000000000333000000000000143017000000000000182023000000000362571400401100000000000000000000810000100000000010032
............................................................................................................................................TAACACTGTCTGGTAACGATGTC.............................................................................................................231432.004320000000000000000000000000000001000030000100000000011101000100030113000400000000080000000000006068464794121100100001114000000000000000021722000000010000000000100100000001011000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGC..............................................................................................................221431.004310000000000000000000000040100010000010000000000000100001010110000001000100000000007000000000000797147631102600000001130000000100200010166000000010000000000000000000000000000000000000000
......................................................................................................CATCTTACCGGACAGTGCTGG.....................................................................................................................................................211378.0037800000000010111000000000000000000000700000000020000313010020120202001310513000000000500010000000032202120231910000000030310100000000021063127340000000000000100000000000001019841420000000010132
......................................................................................................CATCTTACCGGACAGTGC........................................................................................................................................................181364.00364041000000000000000000000000000000000000000000000000000000000000100000010000000003190000000000000110010000000000001241210001000000010603001100000000000000000000000000000000000000002
............................................................................................................................................TAACACTGTCTGGTAACGATGTAT............................................................................................................241297.00297000000000000000000000000010000001000200000000000000000000000020013101200000000001600000000000075483614261010011000002301002000000000061313100000000000000000000000000401000100000000000071
.............................................................................................................................................AACACTGTCTGGTAACGATGTTAT...........................................................................................................241284.00284000000000000000000000000000000000000000000000000000000000002000153401000000000006000000000000498239223140003100000111000000000000002148000000000000000001000000010000000000000000000020
......................................................................................................CATCTTACCGGACAGTGCTG......................................................................................................................................................201278.0027800000000000000000000000010000000000000010000024000100000000002101001105000000000400000000000011915999100000000010100000100000106226772000000010100020000000000000201200200000000020052
............................................................................................................................................TAACACTGTCTGGTAACGATGTTTT...........................................................................................................251273.00273000000000000000000000000000010000000000000000000000300000000013320151611110000000001000000000000024751217620700200001023001000000000000145100000000000000060000000000200000000000000100061
..............................................................................................................................................ACACTGTCTGGTAACGATGTT.............................................................................................................211203.0020300000000000000000000000101202220000400000001000002233001001001112639311100000000000100000000000005169644100000000041000000000000100166000000000000000000000000000000000000000000000010
............................................................................................................................................TAACACTGTCTGGTAACGATGAA.............................................................................................................231194.0019400000000000000000000000000000000000110000000000020001000001000000000004000000000900000000000016686510001001001011200000000000200293948000200000000000000000000100001000000000000000040
............................................................................................................................................TAACACTGTCTGGTAACG..................................................................................................................181182.00182000000000000000000000004000002000005200000000000016930130184234622001060003100001900000000000002120127000000000001000000000014000521010000000000000000000000003001091800000000010040
............................................................................................................................................TAACACTGTCTGGTAACGATA...............................................................................................................211165.00165000000000000000000000006012000000003400000000000000100000010000100000043000000000300101000000093501310000000419100000000000200022612000000021200010000000000000200000700000000000031
......................................................................................................CATCTTACCGGACAGTGCTGGAA...................................................................................................................................................231147.001470000000000000000000000010000000000030000000000100021000000010000310253400000000000000000000008108332120000000001500000000000010423618000000000000000000000000000001103000000000010001
............................................................................................................................................TAACACTGTCTGGTAACGATT...............................................................................................................211140.00140000000000000000000000000000000000001000000000000000000000001010123210132000000000800000000000001330210000000021552000000000000012552000200000000000000000000000100103100000000000030
.............................................................................................................................................AACACTGTCTGGTAACGATGTTG............................................................................................................231110.00110000000000000000000000000000000000000100000000000000000000000000032300000000000000000000000000172697921000000000000000000000000008911000000000000000000000000000000000000000000000002
................................................................................................................................................ACTGTCTGGTAACGATGTT.............................................................................................................191103.001030000000000000000000000030010000000000000000000000188400002431119866000000000000000000000000001000002000000000000000000000005500000000000000000020000000110000000000000000000000002
............................................................................................................................................TAACACTGTCTGGTAACGATGTCA............................................................................................................241101.001010000000000000000000000000000000000000000000000000000000000000000010000000000000010000000000001818137291200000000000000000000000000055000000000000000000000000000000000000000000010000
...............................................................................................................................................CACTGTCTGGTAACGATGTT.............................................................................................................201100.0010000000000000000000000000211000000000000000000000002222040000155200021100000000000000000000000000100000300000000000000000000009630020000000000000010000001130000000000100000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGTTAG...........................................................................................................251100.001000000000000000000000000000000000000010000000000000000000000000020836002000000000000000000000001030134130000000000000000000000000000210000000000000000030000000000000000100000000000001
............................................................................................................................................TAACACTGTCTGGTAACGATGTAG............................................................................................................24199.0099000000000000000000000000000000000105100000000000000000000010062100100020000000001000000000000211069110110000000000000000000000000585000000001000000000000000000000000000000000000000
.............................................................................................................................................AACACTGTCTGGTAACGAT................................................................................................................19190.00900000000000000000000000010000001000000000000000000002000000120112020000000000000063000000000100110000000000000020100030000000000010101100000000000000000000000000000000000000000010
.................................................................................................................................................CTGTCTGGTAACGATGTT.............................................................................................................18190.009000000000000000000000000000000000000000000000000001149300000022105824010000011000000000000000000000002000000000000000000000016210000000000010000030000000100000000001000000000000000
.............................................................................................................................................AACACTGTCTGGTAACGATG...............................................................................................................20181.008100000000000000000000000000000010000320000000000000000000000100000000001200000000012000000000200055132000000001030000000000005100049000000000000000000000201000000201200000000000001
..............................................................................................................................................ACACTGTCTGGTAACGATGTTA............................................................................................................22181.00810000000000000000000000000000000000000000000000000000110000000001987000000000000020000000000005198431100000000000100000000000000244000000000000000000000000000000000000000000000000
...........................................................................................................................................CTAACACTGTCTGGTAACGATGTT.............................................................................................................24176.00760000000000000000000000020010000000000000000000000055100000131201148400000000000002010000000000134303400000000001000000000002000001000000001000000000000100000000000000000000010000
.............................................................................................................................................AACACTGTCTGGTAACGATGTTC............................................................................................................23172.00720000000000000000000000000000000000000000000000000000000000000000102000000000000020000000000009769201000000000001000000000000000238000000000000000000000000000001000000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGG..............................................................................................................22264.00128000010000000000000000003000000000001100000000000100010110032100000011190000000004000000000000162169135600000001210000000000000240031000000001000000000000000000100004000000000000000
...............................................................................................................................................CACTGTCTGGTAACGATGT..............................................................................................................19161.00610000000000000000000000020040000000000000000000000152102008126200000000000000000000000000000000000000000000000010000000000006900000000000000000000000000000000000000000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGTG.............................................................................................................23158.0058000000000100000000000001002000000000000000000000001200000010005000000000000000008000000000000465530300000001101000000000000000222000000000100000000000000000000001000000000000000
.................................................................................CAT-ACCTGGGCCTCTGTGGG..........................................................................................................................................................................20148.0048000000000000000000000000000000000000000000000000000000000000001000002160000000002000000000000271050200000000010010000000000000016000020001000000000000000000000121100000000100100
............................................................................................................................................TAACACTGTCTGGTAACGAG................................................................................................................20147.00470000000000000000000000000000000000020000000000000000000000000010100000300000000036000000000000000001000000000000000000000000000000000100010000000000000000000000000100000000000000
................................................................................................................................................ACTGTCTGGTAACGATGT..............................................................................................................18144.0044000000000000000000000004010000000000000000000000010010000032010011100010000000000000000000000100000600000000020000000000006610012000000000000010000000001000000000000000000000000
............................................................................................................................................TAACACTGTCTGGTAAC...................................................................................................................17144.00440000002000000000000000000000001000061000000000000000000000000111101000100000000000000000000001231100000000000000000000000000000113000000000000000000000000000100111200000000000000
......................................................................................................CATCTTACCGGACAGTGCTGGAT...................................................................................................................................................23137.0037000000000000000000000000000200000000100000000000000010100010000000011210000000000000000000000113314200000000001000000000001003202000000000000000000000000000000000100000000000010
............................................................................................................................................TAACACTGTCTGGTAACGAAA...............................................................................................................21137.0037000000000000000000000001000000000000000000000000000000000000000000000010000000001000001000000613232000000000002000000000000000025001100000100010000000000001000000000000000000011
..............................................................................................................................................ACACTGTCTGGTAACGATGT..............................................................................................................20137.0037000000000000000000000001010000000002100000000000000100000001000000000000000000001000000000000052133200000001000000000000001120052000000000000000000000000000000100000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGTTAC...........................................................................................................25137.0037000000000000000000000000000001000000000000001000000000000000020101101000000000000000000000000585272000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AT-ACCTGGGCCTCTGTGGG..........................................................................................................................................................................19135.0035000000000000000000000000000000000000000000000000000000000001000010000320000000002000000000000053002100000000000000000010000001226000000000000000000000000000000110000000000000001
............................................................................................................................................TAACACTGTCTGGTAACGATC...............................................................................................................21134.00340000000000000000000000000000000000010000000000000000001000000010100000100000000001000000000000401101000000003330000000000000000101000000000000000000000000000000000000000000001000
...........................................................................................................................................CTAACACTGTCTGGTAACGATGT..............................................................................................................23134.0034000000000000000000000005001000000000000000000000002300000002000011000000000000000030000000000124000200000000000000000000001000110000000000100010000000110000000000000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGTCT............................................................................................................24231.00620000000000000000000000000000000000000000000010000000000000000011000000000000000020000000000006218572100000001001100000000000000022000000000000000000000000000000000000000000000000
.............................................................................................................................................AACACTGTCTGGTAACGATGTA.............................................................................................................22130.0030000000000000010000000000000000000000000000000010001100000000000000100000000000002000000000000222122000000000003000000000000001134000000000000000000000000000000000000000000000000
......................................................................................................CATCTTACCGGACAGTGCTGGAAA..................................................................................................................................................24129.0029000000000000000000000000000000000000000000000000001000000000000100003000000000003000000000000200153000000000001000000000000001502000100000000000000000000000000000000000000000000
......................................................................................................CATCTTACCGGACAGTGCTGT.....................................................................................................................................................21129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153014000000000000000000000000001621000000000000010000000000000000000000000000000004
............................................................................................................................................TAACACTGTCTGGTAACGATAA..............................................................................................................22127.0027000000000000000000000000001000000000000000000000000000000000000000000010000000004000000000000112012000000001110000000000000000064000000000000000000000000000000000000000000000001
............................................................................................................................................TAACACTGTCTGGTAACGATGTTTC...........................................................................................................25126.0026000000000000000000000000000000000000000000000000000000000000010013000000000000001000000000000565100100010000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................AACACTGTCTGGTAACGATGTTTT...........................................................................................................24126.0026000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000374001000000000000000000000000000232000000000000000000000000000010000000000000000010
............................................................................................................................................TAACACTGTCTGGTAACGATGAAA............................................................................................................24324.677400000000010000000000000000000000000000000000200000000000012100000000000000000000100000000000062124600000000000200000000000000112515000000000000000000000000000000000000000000000010
............................................................................................................................................TAACACTGTCTGGTAACGAA................................................................................................................20123.0023000000000000000000000000010000000000000000000000000000000001002000000020000000003000000000000040000000000000020000010000000000102000000010000010000000000000200000000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGCA.............................................................................................................23122.0022000000000000000000000000000000000001000000000000010000000000000000000000000000001000000000000540071000000000000000000100100000000000000000000000000000000000000000000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGTTCA...........................................................................................................25120.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274340000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TAACACTGTCTGGTAACGATGTTATT..........................................................................................................26119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120101200010000010000000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................TAACACTGTCTGGTAACGATGTAAT...........................................................................................................25118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504241101000000000000000000000000000000000000000000000000000000000000000000000000000
rn5
CTGGGCCCCCCTGA---------------------GGGTGGAAACCACATATCCTGC----TCTGTGTCTTCCTACCAAAGCAT-ACCTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCAACACTCGCC-----GAAGACAGGCTGATGATAC-ACACT------------------------------TGTCTTAGCTCCTGGACTCCAG--ASizeHit CountTotal NormTotal
No Reads
canFam3
CCAG------------AAGTCTGTCCCTG--------------------------------------TCCTCGGGCCGAGGCGC-ACCTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAG--GTGACCCACTGCCTGCCCACCAGGAAGCAGCCCGAGGACACCCCGTCCTGA---------------------------------GCTCTTGGCCTCCACAGASizeHit CountTotal NormTotal
No Reads
monDom5
CGGGGCCTCT--GAGG-AACCCAGGAACGCAGCAAGGG-----CATCCACGCCGCTCCAGCC-------------CCATGGCATGACGTGGGCCTCTGTGGGCATCTTACTAGACAGTGCTGGATTT-TTGGATGTACTCTAACACTGTCTGGTAACGATGTTTAAAGAGGGAACCCAACCCCAGCA-----GGTG----------------CCGCCCTGAGCTGCTGACTCAGCGCTCCAGCTGAGTGCCTCAG-------TTTCCCTGGASizeHit CountTotal NormTotal
No Reads

Generated: 12/12/2014 at 10:33 AM