ID:

clust_966_SLC25A45

 Coordinate:

chr11:65379843-65380067 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.5 -17.1 -16.6
mature
star
  1. chr11:65379872-65379885 -
  2. chr22:20296861-20296874 -
  3. chr4:41593434-41593447 +

Sense Strand Reads

GCTGCCAGAGGAATGAAAGATCTCACCTGACCCAAATGTCAGGGTGCCCTGAGATCAGGCCTGGCTAATCTTGCCTTTCCTGCCTCTCCTGCTGGTTGGCATCCCGCTTGAGGGGGCAGAGGGAAAGGTTGGCCCACCTGCCCATCCCGCCACCCTACCTGCTCTGTCCTCCCACCCAGGTGAGGCTGCAGACCCAGACCACCTACCGGGGCATCGTTGATTGCATGGTCAAGATTTACCGCCATGAGTCCGTGAGTGGCCCACTCCTTTGGGGTCCTTCCCCTTTCGGGGAGGCATCTGGGGCTGTTGGTACCAGCTTCCCTCT
********************************************************************************************************************************************************************************************...................((....((...((((.((((((...........))))))))))...))....))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039611
liver		 RoviraIPAgo2
breast		 SRR039622
liver		 SRR139185
lung		 SRR139202
spleen		 SRR139207
spleen		 SRR139209
testes		 SRR330907
skin		 TAX577589
breast		 GSM450603
brain		 GSM450600
brain		 TAX577744
breast		 TAX577740
breast		 GSM450606
brain		 SRR040028
cervix		 SRR040018
cervix		 SRR342899
heart		 SRR342901
heart		 TAX577579
breast		 TAX577746
breast
...........................................................................................................................................................................................................TACCGGGGCATCGTTGATT....................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GATTTACCGCCATG............................................................................... 14 0 3 1.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAAAGGTTGGCCCAC............................................................................................................................................................................................ 15 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TCTCCTGCTGGTTGG.................................................................................................................................................................................................................................. 15 0 10 1.00 10 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CCTACCGGGGCATCGTTGA......................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACCCTACCTGCTCTGTCCTCCCAC...................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGACCCAGACCACCTACCGGGGC................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GAGGCTGCAGACCCAGACCACCTACCGGGGCAT............................................................................................................... 33 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGGGGCAGAGGGTATGGTT................................................................................................................................................................................................... 22 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................CTCAGATCAGGCGTGGCTAGTC............................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGGTGCAGACGGAATGGTTG.................................................................................................................................................................................................. 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................CCTGAGATCAGGCGTGGC.................................................................................................................................................................................................................................................................... 18 1 6 0.33 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................GGCGCCCTGAGATGAGGCGTGGC.................................................................................................................................................................................................................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TGGGGTCCTTCCC........................................... 13 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
............................................TACCCTGAGAACCGGCCTGGCT................................................................................................................................................................................................................................................................... 22 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GGAGGGGCATCTGGGGCTGTTGG............... 23 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................TGAGGGCGCAGAGGGAATAGTT................................................................................................................................................................................................... 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................TGAGGGGGCAGAGGGTATTGTT................................................................................................................................................................................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................TGAGGGAGCAGAGGGAACGGAT................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGTTGATTGCATGGTCGGG............................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................CTGAGATCAGGCGTGGCG................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................TGAGGGGGTAGAGGGAACGTTT................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................TGAGGGGGCAGAGGGTAGTGTT................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CGACGGTCTCCTTACTTTCTAGAGTGGACTGGGTTTACAGTCCCACGGGACTCTAGTCCGGACCGATTAGAACGGAAAGGACGGAGAGGACGACCAACCGTAGGGCGAACTCCCCCGTCTCCCTTTCCAACCGGGTGGACGGGTAGGGCGGTGGGATGGACGAGACAGGAGGGTGGGTCCACTCCGACGTCTGGGTCTGGTGGATGGCCCCGTAGCAACTAACGTACCAGTTCTAAATGGCGGTACTCAGGCACTCACCGGGTGAGGAAACCCCAGGAAGGGGAAAGCCCCTCCGTAGACCCCGACAACCATGGTCGAAGGGAGA
****************************************************************...................((....((...((((.((((((...........))))))))))...))....))******************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139179
liver		 TAX577589
breast		 GSM450608
brain		 SRR139194
ovary		 SRR553573
cerebellum		 TAX577580
breast		 TAX577746
breast		 TAX577743
breast		 SRR039623
liver		 SRR342895
heart		 SRR037876
fibroblast		 SRR330912
skin		 SRR330917
skin		 SRR330907
skin		 TAX577738
breast		 SRR039622
liver		 SRR330905
skin		 SRR330919
skin		 SRR330921
skin		 SRR342894
heart		 SRR342899
heart		 TAX577745
breast
...................................................................................................................................................GCGGTGGGAT........................................................................................................................................................................ 10 0 20 34.30 686 686 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGGCTGGACGAGATAGGAGGGT....................................................................................................................................................... 22 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AAAGGACGGAGAGGACGACCAACC.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTGGGTCTGTTGGATGGCGCCGA................................................................................................................ 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GACCGATTAGAACGGA......................................................................................................................................................................................................................................................... 16 0 3 1.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGGTCTGCTGGATGGCGGCGT................................................................................................................ 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTGGTCTGGTGGATGGCGGCGT................................................................................................................ 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGGTATGGTGGATGGCGGCGT................................................................................................................ 22 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGGTATGCTGGATGGTCCCGT................................................................................................................ 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGGTCTGGTGGATGATGCCGT................................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGTCTGTTGGATGCCCGCGT................................................................................................................ 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGTCTGGGTCTGGT............................................................................................................................ 14 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0
.......................................................................................................................................TGGACGTGTTGGGCGGTGGGCT........................................................................................................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCCCCGTAGCAA........................................................................................................... 12 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGTCTGGGTCTGGTGG.......................................................................................................................... 16 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GACGTCTGGG.................................................................................................................................. 10 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GTCTGGGTCGGGTTGCTGGCC.................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................AGAGGACGACC...................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................AAAACGGCAAGGCCGGAGAGG............................................................................................................................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................GGGGAAAGCCC................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................GGGTATGGTGGATGGGCCAGT................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GATGGACGAGACAGGAGT......................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................CTAGAGTGGACTG...................................................................................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................AGGGGAAAGCCC................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CGTAGACCCC...................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Generated: 04/21/2015 at 06:35 PM