ID:

clust_876_SCAP

 Coordinate:

chr3:47475101-47475324 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.1 -26.0 -26.0

Sense Strand Reads

GTTGCTTTGCTGGTTTTGCTTGGTTTCTAGTTTTCCGTATTGCTTAAACCTCAACTTTGCTCACTAATGTTGCTTCTGTTTACTTCTGAGTGGGTTTATGACCTCAGTATTTAACCGGCTTATAATGTCACGATAGCGTTAGTTGCAGGGAGCCCTGGCTCCGGACTGTTTGAATCACAGAAAGTTGTGCAGATGGGAATGCGGAGGGGGGGGCAGTGAGTCGCTGTGGGGGCTCTGGCAGGGGTCAGCCCCTGGTTCGGGTCACTCACTGCTCCACCTTGTATGGCGACAGTCGGAGCTAGGTGAATAAACTCTTTCTGGGGA
*******************************************************************......((((((.......(((((.((((....((....))....)))).)))))((((((.......))))))...(((((((((....)))))...)))).......)))))).********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039622
liver		 SRR040020
cervix		 SRR139172
kidney		 SRR139178
liver		 SRR139204
spleen		 SRR139209
testes		 SRR139211
testes		 SRR191393
breast		 SRR330911
skin		 SRR330920
skin		 SRR342897
heart		 TAX577579
breast		 TAX577739
breast		 SRR330904
skin		 SRR342896
heart		 TAX577743
breast		 SRR037876
fibroblast		 SRR553573
cerebellum		 GSM450610
brain		 GSM450609
brain		 SRR553574
heart		 SRR040040
cervix		 TAX577742
breast		 GSM450601
brain		 SRR040016
cervix		 SRR342895
heart		 SRR342900
heart		 SRR444045
skin		 SRR444048
skin		 SRR444050
skin
............................AGTTTTCCGTATTGCTTAAACCTCA............................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTTCTGAGTGGGTTTA.................................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CGACAGTCGGAGCTAGGTGAATA............... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCCCTGGCTCCGGACTG............................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCCCTGGCTCCGGACTGTTT......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTTCTGAGTGGGTTTATG................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CACAGAAAGTTGTGCAGATGGGAATGCGGAGGG.................................................................................................................... 33 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGGGGCTCTGGCAGGGGTCAGCC.......................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CCGGAGGGGGGGGCAGTGAGTCG..................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GGCGACAGTCGGGGCTAGGTGAA................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCCCTGGCTCCGGACTGTTTGT....................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................CACTCACTGCTCCACC.............................................. 16 0 5 1.00 5 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GTCGGAGCTAGGT.................... 13 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGGGGGGGCGTGAGTCGCTCT................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGAGGGGGGGG............................................................................................................... 11 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CAGCAGCATTTAACCGGCTTAT......................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CCTGGCACCGGACTGTT.......................................................................................................................................................... 17 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CGACCGTCGGAGCAA....................... 15 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1
...................................................................................................................................................................................................GGAAGGCGGACGGGGGGGCA............................................................................................................. 20 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GTTCGAGTCACTCACGGC.................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGGAGAGGGGGGCAGTG.......................................................................................................... 17 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGGGGGTCAGTGAGTCGA.................................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGGCCCTGGTTCGGGGCACTA......................................................... 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................ATCAGTATTGAACCGGCCTA.......................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................CTGCTCCACC.............................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................GTCGGCGCAAGGTGAAT................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................ATCACAGAAAGTTGT........................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................TGAATAAACTCTTTC...... 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CCCCGTGGTTCGGGTCGCT.......................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CGGAGGGGGGG................................................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CAACGAAACGACCAAAACGAACCAAAGATCAAAAGGCATAACGAATTTGGAGTTGAAACGAGTGATTACAACGAAGACAAATGAAGACTCACCCAAATACTGGAGTCATAAATTGGCCGAATATTACAGTGCTATCGCAATCAACGTCCCTCGGGACCGAGGCCTGACAAACTTAGTGTCTTTCAACACGTCTACCCTTACGCCTCCCCCCCCGTCACTCAGCGACACCCCCGAGACCGTCCCCAGTCGGGGACCAAGCCCAGTGAGTGACGAGGTGGAACATACCGCTGTCAGCCTCGATCCACTTATTTGAGAAAGACCCCT
*********************************************************************************************************************************************......((((((.......(((((.((((....((....))....)))).)))))((((((.......))))))...(((((((((....)))))...)))).......)))))).******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139172
kidney		 SRR139178
liver		 SRR139183
lung		 SRR139195
ovary		 SRR139199
placenta		 SRR139202
spleen		 SRR139206
spleen		 SRR191560
breast		 SRR191601
breast		 GSM450607
brain		 SRR095854
brain		 TAX577739
breast		 SRR342894
heart		 SRR330922
skin		 SRR342899
heart		 SRR330912
skin		 SRR342897
heart		 SRR342901
heart		 TAX577740
breast
...................................................................................................................................................................................................................................................................................TGGAACATACCGCTG.................................. 15 0 1 3.00 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.AACGAAACGACCAAAACGA................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AATCAACGTCCCTCGGGACCGAGGCCTG.............................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................TGAGTGACGAGGTGG.............................................. 15 0 18 1.00 18 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGTCACTCAGCGACA................................................................................................. 15 0 4 1.00 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GGCCTGACAAACTTAGTGT................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAACGAAGACAAATG................................................................................................................................................................................................................................................. 15 0 19 1.00 19 0 0 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AACGTCCATCGGGATCGGGGCCT............................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................CGTCCCCAGTCG........................................................................... 12 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0
.......................................................................................................................................................................................................................................................CGGGGACCAAGC................................................................. 12 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGCCTCCCCCCCC............................................................................................................... 13 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................CGGACCAAGCCCAGTGAGTC....................................................... 20 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......ACGACCAAAACGAGCCA............................................................................................................................................................................................................................................................................................................ 17 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................ACTCACCCAAA................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................CATAACGAATT..................................................................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................GCCTCCCCCCC................................................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................CGAGGTGGAAC........................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................CCTCCCCCCC................................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................CCCAGTCGGGGAC...................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GGACCAAGCCC............................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................CGACAATCGGGACCGAGGCCT............................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................................................ACCGCTGTCAGTCTCG......................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Generated: 04/21/2015 at 08:23 PM