ID:

clust_820_PIP5K1C

 Coordinate:

chr19:3660984-3661207 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.9 -8.8 -8.5 -8.5
mature
star
  1. chr19:3661053-3661069 -
  2. chr21:39313157-39313173 +

Sense Strand Reads

GGGACAGTCCCATCGGGAGCCCCCTGTTGCTTGTGGGATTGGGCCGTTTCAAGGAAGTCTTGGAGCTGAGCCGCTAGAGGCTCAGCTGCTAGAGGCACTAGGAGGGACCATGGCGGGGGTGGGGGAGAGGTGCCCACCACCCCTCACAGGTTTCCTCCCGTCCTTCCTCCACAGCGAAGGCAGCAACCTCACCCCCGCCCACCACTTCCAGGACTTCCGCTTCAAGACCTATGCACCTGTCGCCTTCCGCTACTTCCGGGAGCTCTTTGGGATCCGGCCAGATGATTACTTGGTAAGCATATTTGCTGTTACGGGCTTCCAGGC
***************************************************************************************************************************************..............((.........((((.........(((..((...........))..)))...........)))).....))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR095854
brain		 SRR139170
heart		 GSM450599
brain		 SRR139174
kidney		 SRR139179
liver		 SRR139188
lung		 SRR139195
ovary		 SRR139200
placenta		 SRR139216
thymus		 SRR330921
skin		 SRR330904
skin		 SRR342895
heart		 SRR553572
frontal-cortex		 GSM450603
brain		 SRR039619
liver		 SRR039622
liver		 SRR039624
liver		 SRR040008
cervix		 SRR139168
brain		 SRR139182
liver		 SRR139185
lung		 SRR139202
spleen		 SRR139203
spleen		 SRR139204
spleen		 SRR139208
testes		 SRR139210
testes		 SRR139214
thymus		 SRR139219
thymus		 SRR191401
breast		 SRR191427
breast		 SRR191535
breast		 SRR330914
skin		 SRR342901
heart		 TAX577740
breast		 SRR330915
skin		 SRR039613
liver		 SRR342896
heart		 TAX577743
breast		 SRR330908
skin		 SRR330920
skin		 SRR444043
skin
......................................................................................................................................................TTTCCTCCCGTCCTTCCTCCACA....................................................................................................................................................... 23 0 1 4.00 4 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TCACCCCCGCCCACCAC....................................................................................................................... 17 0 2 3.00 6 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CACCCCCGCCCACCAC....................................................................................................................... 16 0 11 3.00 33 0 11 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GTTGCTTGTGGGATT............................................................................................................................................................................................................................................................................................ 15 0 3 2.00 6 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTCCTCCCGTCCTTCCTCCAC........................................................................................................................................................ 22 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GGACTTCCGCTTCAAGA................................................................................................. 17 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................GCTACTTCCGGGAGCT............................................................ 16 0 2 2.00 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTTTCCTCCCGTCCTTCCTCCACA....................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGGACTTCCGCTTCAAGACC............................................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGGCAGCAACCTCACCC.................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTTCCAGGACTTCCGCTTCAAGAC................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CGCTAGAGGCTCAGC.............................................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCCGGCCAGATGATTACTTG................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCAGGACTTCCGCTT...................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCGGCCAGATGATTACTTG................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTCCTCCACAGCGAAGGC............................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTCCTCCCGTCCTTCCTCCACC....................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTCCTCCCGTCCTTC.............................................................................................................................................................. 16 0 5 1.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GTCTTGGAGCTGAGCCGCTAGAGGCT.................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ACCCCCGCCCACCAC....................................................................................................................... 15 0 16 1.00 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CAAGGAAGTCTTGGAGCTGAG.............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................ATGCACCTGTCGCCTTC............................................................................. 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CGGGAGCTCTTTGGGATCCGGC.............................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GCCTTCCGCTACTTCC................................................................... 16 0 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GCGAAGGCAGCAAACTCAACCCCGCCCAC.......................................................................................................................... 29 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CATTGGGCCGTTTCAAGGAAGTCTTGGAGCTGAGCC............................................................................................................................................................................................................................................................ 36 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGGACTTCCGCTTCAAGACCTATG........................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CACTTCCCGGACTTCCGCTTCAAGA................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTCCTCCCGTCCTTCCTCCAA........................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTTTCCTCCCGTCCTTCCTCCAC........................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CTCACAGGTTTCCTCCCGTC.................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTCCTCCCGTCCTTCCTC........................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTCCTCCCGTCCTTCCTCC.......................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ACAGGTTTACGCCCGTCC................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................CCGCTAGAGG.................................................................................................................................................................................................................................................... 10 0 20 0.25 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................AGCTCTTTGGGTTCCGG............................................... 17 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGGGAACATGGCGGCGGTGGG......................................................................................................................................................................................................... 21 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................GCCGCTAGAGG.................................................................................................................................................................................................................................................... 11 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
.....................................................................................................................................................................................CGCAACCTCACACCCGCCC............................................................................................................................ 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................ATTGGTAAGCATATTTG................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCCCGCCCAC.......................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................CCGGGAGCTCTTT........................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCGGCCAGATGA....................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................ACAGCGAAGGCA.............................................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CCCTGTCAGGGTAGCCCTCGGGGGACAACGAACACCCTAACCCGGCAAAGTTCCTTCAGAACCTCGACTCGGCGATCTCCGAGTCGACGATCTCCGTGATCCTCCCTGGTACCGCCCCCACCCCCTCTCCACGGGTGGTGGGGAGTGTCCAAAGGAGGGCAGGAAGGAGGTGTCGCTTCCGTCGTTGGAGTGGGGGCGGGTGGTGAAGGTCCTGAAGGCGAAGTTCTGGATACGTGGACAGCGGAAGGCGATGAAGGCCCTCGAGAAACCCTAGGCCGGTCTACTAATGAACCATTCGTATAAACGACAATGCCCGAAGGTCCG
********************************************************************************************************..............((.........((((.........(((..((...........))..)))...........)))).....))*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total TAX577743
breast		 SRR139205
spleen		 SRR139209
testes		 SRR342894
heart		 GSM532929
cervix		 SRR342896
heart		 GSM450610
brain		 SRR039625
liver		 GSM450605
brain		 SRR342897
heart		 TAX577453
breast		 GSM450604
brain		 SRR039191
blood		 SRR040012
cervix		 SRR094130
uterus		 SRR330920
skin
..............................................................................................................................................................................................................................................CAGCGGAAGGCG.......................................................................... 12 0 17 1.00 17 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GGTGGGGAGTGTCCAAA........................................................................................................................................................................... 17 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGGCAAAGTTCCTAAAGAACCT.................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TTCGAGAAACCCTAGGCCAG............................................. 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GCAGGAAGGAGG.......................................................................................................................................................... 12 0 20 0.20 4 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................GGTGTCGCGTCTGCCGTTGGAGT..................................................................................................................................... 23 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGCAGGAAGGAGGT......................................................................................................................................................... 14 0 20 0.15 3 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GAGCGTACAAAGGAGGGCAGAA................................................................................................................................................................ 22 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGATACGTGGGGAGCGGAAGT............................................................................ 22 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GATGGAGTAGGGGCGGGCGGTGA...................................................................................................................... 23 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................CAGGAAGGAGGTGGCGCTGGC................................................................................................................................................ 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................CGATGAAGGCC................................................................. 11 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GAAGGCGATG....................................................................... 10 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.CCTGTCAGGGTA....................................................................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GGCGATCTCCG................................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................AACGAACACCCTAAGGCAGC...................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................GGATACGTGGACTGCGGACAG............................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................TCCTCCCTGGTACC................................................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................AGAAACTCTAGGACGGTCGACT....................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................GGGGAGTGTCC.............................................................................................................................................................................. 11 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GGAAGGCGATGA...................................................................... 12 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGAGTGCGAAGTCCTGGATAC........................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
CCCTGTCAGGGT........................................................................................................................................................................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 07:52 PM