ID:

clust_79_NOL4L

 Coordinate:

chr20:32482295-32482514 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-58.9 -58.5 -58.5
mature
  1. chr1:32303562-32303573 -
  2. chr10:97056165-97056176 -
  3. chr10:114684279-114684290 -
  4. chr13:72451819-72451830 +
  5. chr13:111069180-111069191 -
  6. chr2:120847039-120847050 +
  7. chr20:32482314-32482325 -
  8. chr3:63091231-63091242 -
  9. chr3:156432595-156432606 -
  10. chr4:148546113-148546124 -
  11. chr5:16130793-16130804 -
  12. chr6:125915497-125915508 +
star

Sense Strand Reads

ATTTACACCTCCGCCCTCTCTCTCCTCCCTCCACCTTGTCTTCAAGGCTGGACACTTTGGATAGGGAGGAGGGGGGAGTGCAATCCGCATTTTTATTCCAGCCGCTCGGGAGCAGAAGTGACCCTGCTCCCACCCGGAGCTGCGTTTGCCCGAGTCCGGCCGCCCCTACCGGGCTGCGCTTCCTGGGGGAAGTTCTCATTAAGCCTCGCTAATTAGCATTATTCCTGTAGAAAGGTTAAGGTTAGACCGTCCTTTTCCTTATGGGAGGCCCACCCCCTCCTCCCCATTCCCTACTCCCTCCCCTCTCCCCAAGAGCACAA
*************************************************************************************..........(((((.(((...((((((((........))))))))...)))....((((..(((((.((..((....))..))))))).))))...(((.(((((...((.((((.((...)))))).)).....))))).))).((((..((((.........))))..)))).)))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139200
placenta		 SRR139219
thymus		 SRR139190
lung		 SRR342896
heart		 SRR139173
kidney		 SRR139207
spleen		 SRR139212
testes		 TAX577743
breast		 SRR342894
heart		 SRR330919
skin		 SRR342901
heart		 SRR039625
liver		 SRR342897
heart		 SRR095854
brain		 GSM450601
brain		 SRR342899
heart		 TAX577746
breast		 TAX577744
breast		 SRR342898
heart		 SRR330916
skin		 SRR330904
skin		 SRR330905
skin		 SRR330908
skin		 SRR330912
skin		 SRR330921
skin		 SRR330922
skin		 SRR342895
heart		 TAX577741
breast
...............................................................................................................................................................................................................................................GGTTAGACCGTC..................................................................... 12 0 12 1.67 20 0 0 0 2 0 0 0 0 3 2 2 0 3 0 0 2 0 0 0 0 1 1 1 1 1 1 0 0
.................................................................................................................................................................................................................................................................................CCCCTCCTCCCCATTC............................... 16 0 20 1.35 27 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GCCGCTCGGGAGCAGAAGTGA....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTTTTATTCCAGCCGCT...................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CTACTCCCTCCCCTCT.............. 16 0 9 1.00 9 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAGTTCTCATTAAGCCT.................................................................................................................. 17 0 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTGCTCCCACCCGGA...................................................................................................................................................................................... 15 0 9 1.00 9 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CCTCGCTAATTAGC....................................................................................................... 14 0 4 1.00 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GATAGGGAGGAGGGGG..................................................................................................................................................................................................................................................... 16 0 8 1.00 8 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CCGCATTTTTATTCC............................................................................................................................................................................................................................. 15 0 5 1.00 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GTTAGACCGTCCTTTTCCT............................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GTTAGACCGTCCTTTTC............................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTCCCGCCGCCCCTACCTGGTT................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................ATAGGGCGGAGGGGGGTATGCA.............................................................................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCTGCTCCCACCCGGA...................................................................................................................................................................................... 16 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCCGGGCCTACGTTTGCCCGA....................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GTTAGACCGTC..................................................................... 11 0 20 0.15 3 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................TGAGGGGGGAGTGCAAACAGCAT...................................................................................................................................................................................................................................... 23 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCCTGTAGAAAGGT.................................................................................... 15 0 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGGGAGCAGAAGTG........................................................................................................................................................................................................ 14 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GAGGCCCCCCCCCTCCTCC..................................... 19 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TACCGGGCTGTGCTTGCTGGTG.................................................................................................................................... 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TACCGGACTGCGATACCTGG...................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCCGGGGCTACGTCTGCCCGAG...................................................................................................................................................................... 22 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CCGTATGCCCTAGTCCGGCC............................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TACCGGGCTGTGCTTACTGGT..................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GGGTTAGACCGTCGTTT................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................AAGCCTCGCTA............................................................................................................. 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAAATGTGGAGGCGGGAGAGAGAGGAGGGAGGTGGAACAGAAGTTCCGACCTGTGAAACCTATCCCTCCTCCCCCCTCACGTTAGGCGTAAAAATAAGGTCGGCGAGCCCTCGTCTTCACTGGGACGAGGGTGGGCCTCGACGCAAACGGGCTCAGGCCGGCGGGGATGGCCCGACGCGAAGGACCCCCTTCAAGAGTAATTCGGAGCGATTAATCGTAATAAGGACATCTTTCCAATTCCAATCTGGCAGGAAAAGGAATACCCTCCGGGTGGGGGAGGAGGGGTAAGGGATGAGGGAGGGGAGAGGGGTTCTCGTGTT
******************************************************..........(((((.(((...((((((((........))))))))...)))....((((..(((((.((..((....))..))))))).))))...(((.(((((...((.((((.((...)))))).)).....))))).))).((((..((((.........))))..)))).)))))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139218
thymus		 SRR139188
lung		 SRR139178
liver		 SRR139182
liver		 SRR139200
placenta		 RoviraIPAgo2
breast		 SRR342897
heart		 GSM450605
brain		 SRR039617
liver		 TAX577746
breast		 SRR040008
cervix		 SRR191435
breast		 SRR191513
breast		 SRR342894
heart		 TAX577742
breast		 SRR330905
skin		 SRR330922
skin		 SRR342898
heart		 SRR330920
skin		 SRR040034
cervix		 GSM450601
brain		 GSM450603
brain		 GSM450610
brain		 SRR039190
blood		 SRR094129
uterus		 SRR095854
brain		 SRR330916
skin		 SRR342895
heart		 SRR342896
heart		 SRR342900
heart		 SRR342901
heart		 SRR553572
frontal-cortex		 TAX577739
breast
...............................................................................................................................................................................................................................................................................TGGGGGAGGAGGGGT.................................. 15 0 20 4.90 98 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CCTCCTCCCCCCTCA................................................................................................................................................................................................................................................. 15 0 20 2.15 43 0 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AGAGGAGGGAGGTGGAA........................................................................................................................................................................................................................................................................................... 17 0 7 2.00 14 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCTTTCCAATTCCAAT............................................................................ 16 0 4 1.00 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GGGGGAGGAGGGGTAA................................ 16 0 14 1.00 14 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CCTTAAGAGTAATTCGGAGC................................................................................................................ 20 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CCGGCGGGGACGGCTCGACGCGGA........................................................................................................................................... 24 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAACGGCTTCAGGCCGGC.............................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCCAAGCTGGCAGCAAAA................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGGACGAGGGTGGGCC....................................................................................................................................................................................... 16 0 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GGAGGTGGAACAGATGTT................................................................................................................................................................................................................................................................................... 18 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGCAAACGGGCGCATGC.................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGCAAATGGGCTCATGC.................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGCTGGCGGGGTTGGCCCG.................................................................................................................................................. 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGGCGGGGATGGC..................................................................................................................................................... 13 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...ATGTGGATGCGGGAGA............................................................................................................................................................................................................................................................................................................. 16 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ATCCCTCCTCCCCCC.................................................................................................................................................................................................................................................... 15 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AAAAATAAGGTCGGCGT...................................................................................................................................................................................................................... 17 1 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GAATAATGTCGGCGAGCCCA................................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CCCCCCACACGATAGGC......................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CTCCTCCCCCCT................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CCGGGTGGGGGAGGATG..................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................CCTCCTCCCCCCT................................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................GGGATGTGGAAGAGAAGTTC.................................................................................................................................................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TGGGGGAGGAGGG.................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AGGGGTAAGGGATG.......................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAGGTCGGCGAG..................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AAAAACAAGGTCGGCGA...................................................................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......GGAGGCGGGAGA............................................................................................................................................................................................................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................GCTCAGGCCGGTGGCGA......................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGGCGGGGATG....................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................AAGGGACGTGGGAGGGGAGAGG............ 22 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CGATGGCCCGACGCGATGTA........................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...ATGTGGAGTCGGGCGAGGGAGG....................................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................CCTTCAAGAGTA......................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGCTCAGGCC................................................................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCTAATTTGGCAGGAGAAGGAA............................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................AAGGGATGTGGGAGGGGGGAGG............ 22 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Generated: 04/21/2015 at 08:21 PM