ID:

clust_773_CCNF

Coordinate:

chr16:2455269-2455492 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.7 -37.7 -37.7
mature
  1. chr1:25506227-25506236 +
  2. chr10:290075-290084 +
  3. chr10:71677651-71677660 +
  4. chr10:110872597-110872606 +
  5. chr11:60748380-60748389 +
  6. chr11:65891176-65891185 +
  7. chr11:70670540-70670549 +
  8. chr12:131211211-131211220 +
  9. chr12:132131997-132132006 +
  10. chr13:18943248-18943257 +
  11. chr14:90454439-90454448 +
  12. chr17:36809688-36809697 +
  13. chr17:75739917-75739926 +
  14. chr2:104754910-104754919 +
  15. chr20:24001785-24001794 +
  16. chr21:40386475-40386484 +
  17. chr3:69707453-69707462 +
  18. chr6:23656748-23656757 +
  19. chr8:142636842-142636851 +
  20. chr9:27992567-27992576 +
  21. chr10:129691087-129691096 +
  22. chr14:105013638-105013647 +
  23. chr15:77731186-77731195 +
  24. chr18:45536414-45536423 +
  25. chr19:2479603-2479612 +
  26. chr19:13173542-13173551 +
  27. chr2:121650786-121650795 +
  28. chr2:154698540-154698549 +
  29. chr2:227354831-227354840 +
  30. chr20:11064708-11064717 +
  31. chr21:41748082-41748091 +
  32. chr7:712075-712084 +
  33. chr7:34091057-34091066 +
  34. chr9:133814058-133814067 +
  35. chr17_KI270857v1_alt:1046003-1046012 +
  36. chrX:6983195-6983204 +
  37. chrX:135019784-135019793 +
  38. chr1:1406728-1406737 +
  39. chr1:40801601-40801610 +
  40. chr1:118985186-118985195 +
  41. chr1:198157247-198157256 +
  42. chr10:43265821-43265830 +
  43. chr15:29115553-29115562 +
  44. chr15:52019154-52019163 +
  45. chr17:1766694-1766703 +
  46. chr17:74566040-74566049 +
  47. chr19:50489794-50489803 +
  48. chr20:38731136-38731145 +
  49. chr3:225039-225048 +
  50. chr3:43690774-43690783 +
  51. chr3:64164146-64164155 +
  52. chr3:190796028-190796037 +
  53. chr5:10761169-10761178 +
  54. chr7:27914045-27914054 +
  55. chr17_KI270861v1_alt:195643-195652 +
  56. chr15_KI270905v1_alt:1390596-1390605 +
  57. chrX:72713598-72713607 +
  58. chr10:132729225-132729234 +
  59. chr10:133394268-133394277 +
  60. chr11:46728730-46728739 +
  61. chr11:82790829-82790838 +
  62. chr11:124870026-124870035 +
  63. chr14:89409367-89409376 +
  64. chr15:50765878-50765887 +
  65. chr18:42122284-42122293 +
  66. chr2:205885779-205885788 +
  67. chr20:37874076-37874085 +
  68. chr3:141052898-141052907 +
  69. chr4:6376926-6376935 +
  70. chr6:33208392-33208401 +
  71. chr7:24051902-24051911 +
  72. chr7:148625579-148625588 +
  73. chr8:53387165-53387174 +
  74. chr9:826687-826696 +
  75. chr6_GL000251v2_alt:4619893-4619902 +
  76. chr6_GL000253v2_alt:4627869-4627878 +
  77. chr6_GL000255v2_alt:4402800-4402809 +
  78. chr1:6642609-6642618 +
  79. chr10:97188785-97188794 +
  80. chr11:68402528-68402537 +
  81. chr16:2455398-2455407 +
  82. chr16:84598781-84598790 +
  83. chr20:34999383-34999392 +
  84. chr21:13517220-13517229 +
  85. chr21:33772080-33772089 +
  86. chr3:37088581-37088590 +
  87. chr4:38706396-38706405 +
  88. chr4:163173022-163173031 +
  89. chr5:101282234-101282243 +
  90. chr5:111685966-111685975 +
  91. chr5:124628043-124628052 +
  92. chr5:147043877-147043886 +
  93. chr5:173670909-173670918 +
  94. chr8:134578750-134578759 +
  95. chr9:89887399-89887408 +
  96. chr9:111116121-111116130 +
  97. chr9:131497634-131497643 +
  98. chr1:65848243-65848252 -
  99. chr1:177805691-177805700 -
  100. chr11:16508600-16508609 -
  101. chr11:65211248-65211257 -
  102. chr11:76660834-76660843 -
  103. chr12:57188206-57188215 -
  104. chr14:58396703-58396712 -
  105. chr16:21757266-21757275 -
  106. chr16:22573406-22573415 -
  107. chr17:43797050-43797059 -
  108. chr18:7154632-7154641 -
  109. chr2:209863399-209863408 -
  110. chr2:240902344-240902353 -
  111. chr22:39311676-39311685 -
  112. chr22:44537538-44537547 -
  113. chr3:136343903-136343912 -
  114. chr7:11424728-11424737 -
  115. chr7:15869288-15869297 -
  116. chr7:32281931-32281940 -
  117. chr7:92970425-92970434 -
  118. chr1:81221376-81221385 -
  119. chr1:226663422-226663431 -
  120. chr11:1078458-1078467 -
  121. chr11:71305819-71305828 -
  122. chr15:42575515-42575524 -
  123. chr17:10631224-10631233 -
  124. chr17:64045381-64045390 -
  125. chr2:36967042-36967051 -
  126. chr21:45914625-45914634 -
  127. chr3:5774642-5774651 -
  128. chr3:29956922-29956931 -
  129. chr5:26569907-26569916 -
  130. chr5:111144068-111144077 -
  131. chr5:135326808-135326817 -
  132. chr6:156183766-156183775 -
  133. chr7:151754691-151754700 -
  134. chr8:21516497-21516506 -
  135. chr9:73008427-73008436 -
  136. chr11_KI270927v1_alt:152995-153004 -
  137. chrX:152868771-152868780 -
  138. chr1:206476200-206476209 +
  139. chr15:23845267-23845276 +
  140. chr17:67437509-67437518 +
  141. chr18:44640950-44640959 +
  142. chr2:5866380-5866389 +
  143. chr2:10419805-10419814 +
  144. chr20:13273047-13273056 +
  145. chr3:49018321-49018330 +
  146. chr3:149387061-149387070 +
  147. chr3:186048863-186048872 +
  148. chr5:36071359-36071368 +
  149. chr6:16556522-16556531 +
  150. chr6:112166565-112166574 +
  151. chr7:19924363-19924372 +
  152. chr7:149719641-149719650 +
  153. chr8:23014872-23014881 +
  154. chr8:73966962-73966971 +
  155. chr8:81239625-81239634 +
  156. chr8:133075568-133075577 +
  157. chrX:93254049-93254058 +
  158. chr1:206477800-206477809 +
  159. chr10:63500191-63500200 +
  160. chr11:17721634-17721643 +
  161. chr15:33314818-33314827 +
  162. chr16:58171427-58171436 +
  163. chr16:72190647-72190656 +
  164. chr16:89567654-89567663 +
  165. chr17:43829734-43829743 +
  166. chr18:49019314-49019323 +
  167. chr18:50021361-50021370 +
  168. chr19:304837-304846 +
  169. chr19:35468416-35468425 +
  170. chr19:49910145-49910154 +
  171. chr2:80023991-80024000 +
  172. chr4:185359257-185359266 +
  173. chr7:1219734-1219743 +
  174. chr7:56026380-56026389 +
  175. chr7:74038867-74038876 +
  176. chr9:132039281-132039290 +
  177. chrX:119716523-119716532 +
  178. chr1:46364576-46364585 +
  179. chr11:61484798-61484807 +
  180. chr11:77659883-77659892 +
  181. chr12:49070116-49070125 +
  182. chr14:56176446-56176455 +
  183. chr19:35612544-35612553 +
  184. chr19:50912075-50912084 +
  185. chr2:29737938-29737947 +
  186. chr3:181711444-181711453 +
  187. chr4:1099116-1099125 +
  188. chr5:133121986-133121995 +
  189. chr7:12013284-12013293 +
  190. chr7:97068258-97068267 +
  191. chr8:10697933-10697942 +
  192. chr8:15703735-15703744 +
  193. chr8:102560590-102560599 +
  194. chr9:22288296-22288305 +
  195. chr9:28579831-28579840 +
  196. chr9:70387953-70387962 +
  197. chr9:136430261-136430270 +
  198. chr1:207980707-207980716 +
  199. chr11:1508579-1508588 +
  200. chr11:64713946-64713955 +
  201. chr12:109477806-109477815 +
  202. chr13:112904752-112904761 +
  203. chr14:50389783-50389792 +
  204. chr17:80859250-80859259 +
  205. chr19:12559924-12559933 +
  206. chr2:28603993-28604002 +
  207. chr2:161040317-161040326 +
  208. chr22:35335108-35335117 +
  209. chr5:10868437-10868446 +
  210. chr5:133338318-133338327 +
  211. chr6:6956963-6956972 +
  212. chr7:129769121-129769130 +
  213. chr9:137422930-137422939 +
  214. chr1:32362012-32362021 +
  215. chr1:44213333-44213342 +
  216. chr1:157993964-157993973 +
  217. chr10:62582946-62582955 +
  218. chr10:98407639-98407648 +
  219. chr15:86905216-86905225 +
  220. chr16:1642944-1642953 +
  221. chr16:30651348-30651357 +
  222. chr16:58129713-58129722 +
  223. chr18:3534477-3534486 +
  224. chr19:2494838-2494847 +
  225. chr20:64011347-64011356 +
  226. chr22:23839242-23839251 +
  227. chr5:78770397-78770406 +
  228. chr5:157672031-157672040 +
  229. chr9:113811-113820 +
  230. chr9:78439377-78439386 +
  231. chr9:121651678-121651687 +
  232. chr22_KI270879v1_alt:75604-75613 +
  233. chrX:149783418-149783427 +
  234. chr10:120999689-120999698 +
  235. chr21:46385912-46385921 +
  236. chr6:82439547-82439556 +
  237. chr1:25544255-25544264 -
  238. chr1:240458440-240458449 -
  239. chr10:7999561-7999570 -
  240. chr11:47414053-47414062 -
  241. chr11:69356665-69356674 -
  242. chr15:41951792-41951801 -
  243. chr17:74250135-74250144 -
  244. chr20:36194216-36194225 -
  245. chr20:47956762-47956771 -
  246. chr21:38474194-38474203 -
  247. chr22:42344525-42344534 -
  248. chr5:39885089-39885098 -
  249. chr5:178956462-178956471 -
  250. chr6:131866289-131866298 -
  251. chr7:29516180-29516189 -
  252. chr9:109498409-109498418 -
  253. chr9:130175263-130175272 -
  254. chrX:153885794-153885803 -
star

Sense Strand Reads

CCTGCCTGAAGGGCTTATACCTGTTCTAGCTTCACCGGCATCTTCTTCGTAGCAGAACCTTTGGGAGCACGTGGTGACAGGCTGGGGCACGCGGGTGTTAGAGGCAGGTGTGGAGGGCCTGGCCTCCCAGCGCCGCCGTCCATGACTGGGTCTCCTGGGCTCTCTCCACCTTGCAGGAAGCGGGAGAACAGCCTCCAGGAAGACAGAGGCAGCTTCGTTACCACCCCCACTGCGGAGCTGTCCAGCCAGGAGGAGACGCTGCTGGGCAGCTTCCTCGACTGGAGCCTGGACTGCTGCTCTGGCTATGAAGGCGACCAGGAGAGT
*******************************************************************************************************************(((((((....)))).))).(((((...))).))((((((((((((.(((((..(((.....)))..)))))..)))..))))).))))************************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR342897
heart
GSM450602
brain
RoviraIPAgo2
breast
SRR330906
skin
SRR330917
skin
SRR039190
blood
SRR139167
heart
SRR139168
brain
SRR139191
ovary
SRR330913
skin
SRR553572
frontal-cortex
SRR553576
testes
TAX577588
breast
TAX577744
breast
GSM450601
brain
SRR342894
heart
SRR342899
heart
SRR094131
uterus
SRR342896
heart
SRR553573
cerebellum
SRR191549
breast
SRR342898
heart
SRR342901
heart
SRR094132
uterus
SRR040018
cervix
TAX577590
breast
SRR330915
skin
SRR191633
breast
SRR330908
skin
SRR330919
skin
SRR444060
skin
SRR037876
fibroblast
SRR040012
cervix
SRR330905
skin
SRR342895
heart
SRR342900
heart
TAX577743
breast
TAX577746
breast
...................................................................................................................................................................................GCGGGAGAAC....................................................................................................................................... 10 0 20 9.95 199 199 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGCCGCCGTCCATGAC.................................................................................................................................................................................. 16 0 1 2.00 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................ACTGGAGCCTGGACTGCTGCTCTGG...................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GAGGAGACGCTGCTGGGCA........................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CCCAGCGCCGCCGTCCATGACTG................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................GGGCAGGTACCTCGACTGGAG........................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CCCACTGCGGAGCTGTCCAGCCAGGAGGAGACGC................................................................. 34 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTTACCACCCCCACTGCGG......................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTAGCTTCACCGGCATCT......................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GGAAGACAGATGTAGCTTCGTT......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGCGGAGCTGTCCAGCCAGGAGGAGA.................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGGACTGCTGCTCTGGCTATGAAGGCGACC........ 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTGCGGAGCTGTCCAGCCAGGAGGAG..................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAGCGGGAGAACA...................................................................................................................................... 13 0 20 0.40 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................ACAGGGTGGGACACGCGGGTG................................................................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TGGGGCACGCGGTTGTT................................................................................................................................................................................................................................. 17 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CCAGCCAGGAGGAGACG.................................................................. 17 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CTGGACTGCTGCTCTG....................... 16 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CGACCGGAGCCTGTACTGC.............................. 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCCAGGAAGACAGAGGC.................................................................................................................. 17 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GAAAGGCTGGGGTGCGCGGGTGT.................................................................................................................................................................................................................................. 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AGGAAGCGGGAGAAC....................................................................................................................................... 15 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AAAGGCTGGGGCGAGCGGGTGTT................................................................................................................................................................................................................................. 23 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CAGCATCCTCGACTGGA......................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CCTCGACTGGA......................................... 11 0 20 0.15 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TCCTCGACTGGA......................................... 12 0 20 0.15 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGCGGAGCTGTCC................................................................................. 13 0 17 0.12 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGGACTGCTGCTCTG....................... 15 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CAACGGAATCTGCTTCGTAGC............................................................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GCGGAGCTGTCGAGCCACGCG........................................................................ 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................AGCTTCACCGGC............................................................................................................................................................................................................................................................................................. 12 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGCGGGAGAACA...................................................................................................................................... 12 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CCCAGCGCCG............................................................................................................................................................................................. 10 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCAGGAAGACAGAGGC.................................................................................................................. 16 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTCCTGGGCTCTCTCCAT........................................................................................................................................................... 19 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGGAAGACTGAAGCAGGTTCGT.......................................................................................................... 22 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................GGTAAGCTTCCTCGACTGGAT........................................ 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TTCCTCGACGGGAGC....................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................TAGCTTCACCGGCATCTGGTTA.................................................................................................................................................................................................................................................................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................TAGCTTCTCCGACATATTCTTC.................................................................................................................................................................................................................................................................................... 22 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CGTAAGCTTCCTCGACTGGA......................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................TGGGGTACGCGGTTGTTTGA.............................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................AGACGCTGCTGG........................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTGGAGGGCCTGGCCCCC..................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................GGGGATCATCCTCGACTGGAG........................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGCCTCCAGGAAGAC........................................................................................................................ 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................GGGCAACATCCGCGACTGGA......................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................................CGGCAACATCCTCGACTGGA......................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGGAAGACAGAGG................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................TGTGGAGGGCCTGGC......................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGACGGACTTCCCGAATATGGACAAGATCGAAGTGGCCGTAGAAGAAGCATCGTCTTGGAAACCCTCGTGCACCACTGTCCGACCCCGTGCGCCCACAATCTCCGTCCACACCTCCCGGACCGGAGGGTCGCGGCGGCAGGTACTGACCCAGAGGACCCGAGAGAGGTGGAACGTCCTTCGCCCTCTTGTCGGAGGTCCTTCTGTCTCCGTCGAAGCAATGGTGGGGGTGACGCCTCGACAGGTCGGTCCTCCTCTGCGACGACCCGTCGAAGGAGCTGACCTCGGACCTGACGACGAGACCGATACTTCCGCTGGTCCTCTCA
************************************************************************************************************************(((((((....)))).))).(((((...))).))((((((((((((.(((((..(((.....)))..)))))..)))..))))).))))*******************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553576
testes
SRR553572
frontal-cortex
GSM450608
brain
SRR139200
placenta
SRR139211
testes
GSM450600
brain
SRR040028
cervix
TAX577579
breast
GSM450609
brain
GSM450610
brain
GSM450605
brain
SRR094132
uterus
GSM450598
brain
GSM450607
brain
RoviraIPAgo2
breast
TAX577744
breast
SRR330907
skin
SRR330914
skin
GSM450604
brain
SRR040018
cervix
SRR040042
cervix
SRR330919
skin
SRR330923
skin
SRR342895
heart
SRR342896
heart
SRR342897
heart
TAX577588
breast
..................................................................................................................................GCGGCGGCAGGTATTGA................................................................................................................................................................................. 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTGGGGGTGACGCCTCGACAGGTCGGT............................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAAGATCGAAGTGGCCGTAGAAGAAGCAT................................................................................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GGTCGGTCCTCCTCTG................................................................... 16 0 18 1.00 18 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCGCCCTCTTGTCGGAGGTCCTTCT......................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................ATGGACAAGTTCGATGAGGCCGT............................................................................................................................................................................................................................................................................................ 23 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGGGCACCACTGTCGGACACCGT........................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGGACATGTTCGAAGAGGCCGT............................................................................................................................................................................................................................................................................................ 22 3 6 0.33 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CCGTGAGAGGTGGAACGTCC................................................................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GAGGACCCGAGAGAGGT............................................................................................................................................................ 17 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGGACAAGTTCGAAGAGGCCCT............................................................................................................................................................................................................................................................................................ 22 3 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGGATACGATCGAAGAGGCCGT............................................................................................................................................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATCGAAGCAATGGTGGGC................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGGACACAATCGAAGAGGCCGT............................................................................................................................................................................................................................................................................................ 22 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GCGCCCACATTCTGCGT.......................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCGGTCTCGGTCTAAGCAATGG...................................................................................................... 22 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCAATGGCGTGGGTGAGGCC......................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTCGAAGCAAGAGTGGGGGT............................................................................................... 20 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................CAAGATCGGGCTGGCCGTAG.......................................................................................................................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CCAGAGCACTCGAGAGAG.............................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GGTCGGTCCTCCTCT.................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................TGGACAAGTTCGAAGAGGCAGT............................................................................................................................................................................................................................................................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................CGGAGGGTCGCGGC............................................................................................................................................................................................. 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................TGCACGTGATCGAAGTGGCC.............................................................................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AGTCGGTCCTGCTCTGCG................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GGTGGAACGTCCT.................................................................................................................................................. 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................TTGCGGCGGCAGGTTCTTA................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................GGCCAAGTTCGAAGAGGCCGT............................................................................................................................................................................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................GGCGGCAGGTAC.................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Generated: 04/21/2015 at 07:02 PM