ID:

clust_480_CD2BP2

 Coordinate:

chr16:30354255-30354477 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.4 -28.1 -27.9
mature
star
  1. chr10:10270751-10270766 +
  2. chr10:11120283-11120298 -
  3. chr11:93798900-93798915 -
  4. chr12:23847054-23847069 +
  5. chr12:95018457-95018472 +
  6. chr13:107442060-107442075 +
  7. chr16:30354397-30354412 -
  8. chr17:71290282-71290297 -
  9. chr18:47922180-47922195 -
  10. chr2:220466917-220466932 +
  11. chr20:9289243-9289258 -
  12. chr3:24236187-24236202 +
  13. chr3:62270769-62270784 +
  14. chr4:19129471-19129486 -
  15. chr4:106127570-106127585 -
  16. chr4:169586781-169586796 -
  17. chr6:156472101-156472116 +
  18. chr8:32097803-32097818 +
  19. chr9:15296446-15296461 -
  20. chr9:79204498-79204513 +

Sense Strand Reads

GGCGGGGCGGGCAGGCAGAGAAAAGCCTAGTTTTTTCAGGTTCTCTGAGGAATGGGTTGGGAGCGTCTTTAGTGTGGCTCCTGAAATATTTGGGGAAGTAGTCGAGATCCTGAAATATTTGGGGAATATTTGGGTCCAGATCCGGAAGTATTTGGGGAGGTAGCCAGTAACCTGCATTTCTCAACTTTCTGGCTCCTGCTCACAGCTGGTGGACCCTGTGGCTGGGTCAGGGGGTCCTGGGAGCCGCTTTAAAGGCAAACACTCTTTGGATAGCGATGAGGAGGAGGATGATGATGATGGGGGGTCCAGCAAATATGACATCT
**********************************************......((((((.(((....(((.(((((...((((.((((((((.((((...........)))).)))))))).))))))))).)))))).))))))..********************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553576
testes		 SRR139210
testes		 SRR039622
liver		 RoviraIPAgo2
breast		 SRR139171
kidney		 SRR139194
ovary		 SRR139209
testes		 SRR039617
liver		 SRR095854
brain		 SRR139196
ovary		 SRR094130
uterus		 SRR039612
liver		 SRR039621
liver		 SRR139184
lung		 SRR139193
ovary		 SRR139203
spleen		 SRR139208
testes		 SRR139211
testes		 SRR139217
thymus		 SRR330905
skin		 SRR330921
skin		 TAX577738
breast		 GSM450601
brain		 TAX577453
breast		 SRR342901
heart		 TAX577746
breast		 SRR039614
liver		 SRR040036
cervix		 SRR330904
skin		 SRR039620
liver		 TAX577740
breast		 GSM450602
brain		 GSM450609
brain		 SRR040042
cervix		 TAX577579
breast		 TAX577745
breast
.........................................................................................................................................................................................................................................................TAAAGGCAAACACTCTTTGGATAGCG................................................ 26 0 1 3.00 3 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGCGTCTTTAGTGTGG...................................................................................................................................................................................................................................................... 16 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTTAAAGGCAAACACTCTTTGGATAGC................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TATTTGGGGAATATTT................................................................................................................................................................................................ 16 0 20 1.10 22 0 0 0 0 0 0 0 0 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AGCCGCTTTAAAGGCAAACACTCTTTG....................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AACACTCTTTGGATAGCGATGAGGAG........................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AAAGGCAAACACTCTTTGGATAGCGATGAGG.......................................... 31 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AGGCAAACACTCTTTGGATAGCGATGAGGT......................................... 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CTTTGGATAGCGATGAGGAGGAGGATGATGA............................. 31 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACTTTCTGGCTCCTGCTCACA....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CTCTGAGGAATGGGTTGGGAGC................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTGGATAGCGATGAGGAGGAGG.................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CTTTGGATAGCGATGAGGAGGAG..................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTTGGGGAGGTAGCCAGTAACCTGCA................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TTAAAGGCAAACACTCTTTGGATAGC................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TTAAAGGCAAACACTCTTTG....................................................... 20 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTGGGTAGCGATGAGGAGGAGGAT.................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTGGGGAGGTAGCCAGTAA......................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................AGCGATGAGGAGGAGGATGATA.............................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GAGGAGGAGGATGATGATGATGGGGGGTCCA............... 31 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGAAATATTTGGGGAAGTAGTCGAGA........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTGGGGAGGTAGCCAGTAACCTG..................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................AAGGCAAACACTCTTTGGATAGCGATGA............................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGTGGACCCTGTGGCTGG.................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TATTTGGGTCCAGATCCGGAAGTATTT.......................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TGAGGAGGAGGATGATGATGATGGGG..................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TAAAGGCAAACACTCTTTGGATAGCGAT.............................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AGGAGGAGGATGATGATGATGG....................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGAGCCGCTTTAAAGGCAAACACTCT.......................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTGGGGAGGTAGCCAGTAAC........................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTGGGGAGGTAGCCAGTA.......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTGGATAGCGATGAGGAGGAGGA................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGGGGAGGTAGCCAGTAACCTGCA................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATTTGGGGAAGTAGTCGAGATCC..................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TTATAGCGATGAGGAGGAGGAT.................................. 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CTTTGGATGTCGATGTGGAGGAGG.................................... 24 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGTGGACCCTGTGGC..................................................................................................... 16 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TGAGGAAGGCGTTGGGACCGTC................................................................................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................GGGGGATGATGACGATGGGGGG................... 22 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGCTGGTGGACCCTGTGGC..................................................................................................... 20 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GATGAGGAGGAGGATGATGA............................. 20 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGGAGCGTCCATAGTTTGGCT.................................................................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CTTTGGATAGCGTTGAGTAGGG...................................... 22 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGGGTCAGGGGGTCGTG.................................................................................... 17 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TAGCGACGAGGAGGTGGATGAG............................... 22 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AGGAGGAGGATGATGATGAT......................... 20 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GGAGGAGGATGATGATGATG........................ 20 0 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGGGGGGGAGCGTCGTTAGT.......................................................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTGGACCCTGTGGCT.................................................................................................... 15 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AGGAGGAGGATGATGATGA.......................... 19 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGGGGTCCAGGGTGCCGCTTTC........................................................................ 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TGGGGAGGAGGATGATGA............................. 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................GAGGAGGATGATGATGATG........................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AGAGGAGGATGATGATGATTG....................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................TGGGTCAGGCGGTCCTG.................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................TGAGGTAGGGGTTGGTAGCGT................................................................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................TGGGGAAGTAGTTCAGATCTTG................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CCGCCCCGCCCGTCCGTCTCTTTTCGGATCAAAAAAGTCCAAGAGACTCCTTACCCAACCCTCGCAGAAATCACACCGAGGACTTTATAAACCCCTTCATCAGCTCTAGGACTTTATAAACCCCTTATAAACCCAGGTCTAGGCCTTCATAAACCCCTCCATCGGTCATTGGACGTAAAGAGTTGAAAGACCGAGGACGAGTGTCGACCACCTGGGACACCGACCCAGTCCCCCAGGACCCTCGGCGAAATTTCCGTTTGTGAGAAACCTATCGCTACTCCTCCTCCTACTACTACTACCCCCCAGGTCGTTTATACTGTAGA
*********************************************************************************************************************************************************************************......((((((.(((....(((.(((((...((((.((((((((.((((...........)))).)))))))).))))))))).)))))).))))))..********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139168
brain		 SRR139198
placenta		 SRR139201
placenta		 SRR342901
heart		 SRR094129
uterus		 SRR342897
heart		 SRR342900
heart
........................................................................................................................................................ACCCCTCCATCGGTCA........................................................................................................................................................... 16 0 4 1.00 4 4 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TGAGAAACCTATCGCT............................................... 16 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGAAATTTCCGTTTGTGA............................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................AAACCCCTCCATCGGTC............................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CCTATCGCTAC............................................. 11 0 20 0.15 3 0 0 0 3 0 0 0
.....................................TCCATCAGACTCCTTACCC........................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................CTATCGCTAC............................................. 10 0 20 0.05 1 0 0 0 0 0 1 0
...........................................................................................................................................................................................AGACCGAGGACGA........................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/21/2015 at 07:19 PM