ID:

clust_474_USP31

 Coordinate:

chr16:23075202-23075424 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-61.3 -61.3 -61.3
mature
star
  1. chr16:23075250-23075265 -
  2. chr5:40771741-40771756 +

Sense Strand Reads

GTTCTAGGAAGAAAAGCAAGTAGAATTATTTTGTAATTAATGAGTTTGCTGTGCTGTCTCAGTTTCCACACTGTGACTGAGAAGAGGCCATTCTGAAGAGGAGCAGGCTGAAAGGAGGCAAGGCTGTTCTGTCTCCTTCTCTTGGGCATGTCCCTCACAGCTCTGCTCCCACTCACCACTCCAGAAGAGCAGCTACTCCCCAGCTGGGTCATGTGTGCATCAAGCCTGACCTGACGCCACTGGCCAATTGCTGTTTCCTTAGAGCTCCATTTGCTGCTTACATTTTAAGTTCTTTCCCTTCTGGTTCCGGCAAGTTCTCAGCT
****************************************************((((((((((((..........))))))))((..((..(((((.((.(((((((((((..(((.((((((((......))))(((......)))..)))))))..)))).))))))).........)).)))))..))..))......))))(((((((.((..((.....))...)).)))).))).*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039622
liver		 SRR553576
testes		 SRR342894
heart		 SRR039623
liver		 GSM450605
brain		 SRR342896
heart		 GSM450601
brain		 GSM450604
brain		 GSM450606
brain		 GSM450610
brain		 SRR039613
liver		 SRR039620
liver		 SRR139204
spleen		 SRR330904
skin		 SRR330913
skin		 SRR040008
cervix		 SRR039190
blood		 SRR039625
liver		 SRR342900
heart
...................................................................ACACTGTGACTGAGAAGAGGCCATTCT..................................................................................................................................................................................................................................... 27 0 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................ACACTGTGACTGAGAAGAGGCCATTC...................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGCTGGGTCATGTGTGCATA...................................................................................................... 20 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GTGACTGAGAAGAGGCCATT....................................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................CTGTGACTGAGAAGAGGCCA......................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CACTGTGACTGAGAAGAGGCC.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................GTGACTGAGAAGAGGCCATTC...................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CATTCTGAAGAGGAGCAGGCTGAAAGGA............................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGTGACTGAGAAGAGGCC.......................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TCTGGTTCCGGCAAGTTCTCAGC. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CATGTGTGCATCAAGC.................................................................................................. 16 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................TGTGACTGAGAAGAGGCCATT....................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGTGACTGAGAAGAGGCCATTC...................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCACACTGTGACTGAGAAGAGGCCAT........................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCCACACTGTGACTGAGAAGAGGCC.......................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCCACACTGTGACTGAGAAGAGGCCA......................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CACTGTGACTGAGAAGAGGCCATTC...................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCACACTGTGACTGAGATACGGCC.......................................................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTTCCACACTGTGACTGAGAAGAGGC........................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGGAAGAAAAGCAAGTAGAAT......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCTGACCTGACGCCACTGGC............................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTGACGCCACTGGCCAATTGCTGT..................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................CCACACTGGGACTGAGACGCGGC........................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................AAGAGGAGCAGGCTGAAAGG................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GTGACTGAGAAGAGGCCA......................................................................................................................................................................................................................................... 18 0 2 1.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................CTGAGAAGAGGCCATTCTGAAG................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGTGACTGAGAAGAGGCCATTCT..................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGTGACTGAGAAGAGGCCATTCTGAAGAGGT............................................................................................................................................................................................................................. 31 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTCATGTGTGCATCAAGCCTGACCTGACG....................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................CTGAGAAGAGGCCATTTTG.................................................................................................................................................................................................................................... 19 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CACACTGTGACTGAGACACGGC........................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................CACACTGTGACTGAGA................................................................................................................................................................................................................................................. 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AGAAGCAAGTAGAATTAT...................................................................................................................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................AGGCAAGGCTGT.................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................CTCTGCTCCCACT...................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CAAGATCCTTCTTTTCGTTCATCTTAATAAAACATTAATTACTCAAACGACACGACAGAGTCAAAGGTGTGACACTGACTCTTCTCCGGTAAGACTTCTCCTCGTCCGACTTTCCTCCGTTCCGACAAGACAGAGGAAGAGAACCCGTACAGGGAGTGTCGAGACGAGGGTGAGTGGTGAGGTCTTCTCGTCGATGAGGGGTCGACCCAGTACACACGTAGTTCGGACTGGACTGCGGTGACCGGTTAACGACAAAGGAATCTCGAGGTAAACGACGAATGTAAAATTCAAGAAAGGGAAGACCAAGGCCGTTCAAGAGTCGA
***********************************************************************************((((((((((((..........))))))))((..((..(((((.((.(((((((((((..(((.((((((((......))))(((......)))..)))))))..)))).))))))).........)).)))))..))..))......))))(((((((.((..((.....))...)).)))).))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139207
spleen		 SRR139195
ovary		 SRR139188
lung		 SRR139198
placenta		 SRR139204
spleen		 SRR139212
testes		 SRR139219
thymus		 SRR330905
skin		 SRR342901
heart		 SRR039619
liver		 SRR342894
heart		 SRR342895
heart		 SRR037876
fibroblast		 TAX577738
breast		 GSM450601
brain		 SRR330906
skin		 SRR330917
skin		 SRR342897
heart		 TAX577579
breast		 TAX577740
breast		 TAX577743
breast
..........................................................................................................................................................................................................................................................................................................AAGACCAAGGCCGTT.......... 15 0 3 6.00 18 9 0 3 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GAGTCAAAGGTGTGA........................................................................................................................................................................................................................................................... 15 0 20 4.80 96 48 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GAAGACCAAGGCCGTT.......... 16 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................CGACAAAGGAATCTCG.......................................................... 16 0 3 1.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGAGTCAAAGGTGTGA........................................................................................................................................................................................................................................................... 16 0 10 1.00 10 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGAGTCAAAGGTGTGA........................................................................................................................................................................................................................................................... 17 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGACACGACAGAGTCAAT.................................................................................................................................................................................................................................................................. 18 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GAGGTAAACGAC............................................... 12 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CCGGTAAGACTT.................................................................................................................................................................................................................................. 12 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................AGACCAAGGCC............. 11 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TGTAAAATGCAATAACGGGAAGA..................... 23 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................AAAGGGGCGACCAAGGCCG............ 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GAAGACCAAGGCC............. 13 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACGTAGTTCGGACCGGA........................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................ACAGAGTCAAAGGTGT............................................................................................................................................................................................................................................................. 16 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................CGGTAAGACTTCTC............................................................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................CGCAAACTACACGACAGCGT...................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................GTGGTTCGGACTAGACTGC....................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................GATGAGGGGTCGAC..................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................CACGTCCGACTTTACTCCGT........................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................GAGTGTCGAGACG............................................................................................................................................................. 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Generated: 04/21/2015 at 07:04 PM