ID:

clust_390_AP3M1

 Coordinate:

chr10:74128651-74128873 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-63.0 -62.5 -62.5

Sense Strand Reads

TGAGTGTAGAGTGGTACTAAGTGAGACTAGAGTAAAATCTATAGCCAAGAACAAGCAAACCATACATAACCTGGGCAAAAATTGTGGTACCGGTCCTTTGCAAGGTTATGCATGGTCAAATTATGGCACTGGTTCTTTGCTCAGGTTATGCATGGTCCATTTTGCTCTGCTTCTGAAAGCTGAGTACTTTGCAAGCAGAGCAAAACGGACCATGCATAACCTGGGCAAAACCATGAACCATTGCCATAATCTTACCATAGTCTGTAGAGTTTGTGGCCAACAAGGAGACAGACCTACCTGTAGTTCGTGAGGACATTCCCCAA
***************************************************************************************************************************************(((((((((((((((((((((((.(((((((((((((...((((.......))))..))))))))))))).)))))))))))))))))))))))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039190
blood		 SRR039625
liver		 SRR094132
uterus		 SRR139202
spleen		 TAX577739
breast		 SRR139186
lung		 SRR342897
heart		 GSM450608
brain		 SRR039612
liver		 SRR040028
cervix		 SRR094131
uterus		 SRR139164
heart		 SRR139176
kidney		 SRR139184
lung		 SRR139203
spleen		 SRR139204
spleen		 SRR139211
testes		 SRR139219
thymus		 SRR191571
breast		 SRR191603
breast		 SRR330919
skin		 SRR342898
heart		 SRR363676
fibroblast		 TAX577740
breast		 SRR039617
liver		 SRR191463
breast		 SRR094129
uterus		 GSM450610
brain		 SRR342899
heart		 SRR191548
breast		 SRR553575
Kidney		 TAX577590
breast
.................................................................................................................................................................................................AGCAGAGCAAAACGGACCATG............................................................................................................. 21 0 1 7.00 7 2 2 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CATGGTCCATTTTGCTCTGCT........................................................................................................................................................ 21 0 1 4.00 4 0 0 0 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCAGAGCAAAACGGACCATGCA........................................................................................................... 22 0 1 3.00 3 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGCATGGTCCATTTTGCT............................................................................................................................................................. 18 0 1 3.00 3 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCAGAGCAAAACGGACCATG............................................................................................................. 20 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGCATGGTCCATTTTGCTCTGC......................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTCGTGAGGACATTCCCC.. 18 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGAGCAAAACGGACCATGCATA......................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGCAGAGCAAAACGGACCATGC............................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCAGAGCAAAACGGACCAT.............................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CATGGTCCATTTTGCTCTGCTT....................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCAGAGCAAAACGGACCATGCAA.......................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CATGGTCCATTTTGCTCTGCTTT...................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGCAGAGCAAAACGGACCATA............................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATGGTCCATTTTGCTCTGCTT....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATGGTCCATTTTGCTCTGCTTC...................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGAGCAAAACGGACCATGCAT.......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CATGGTCCATTTTGCTCTGCTAA...................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AAATTGTGGTACCGGT..................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CAGAGCAAAACGGACCATGCATT......................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATGGTCCATTTTGCTCTGCTTA...................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ATGCATAGTCCATTTTGCTCTGT......................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................ACTAGAGTAAAATCT........................................................................................................................................................................................................................................................................................... 15 0 8 1.00 8 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TACATAACCTGGGCA...................................................................................................................................................................................................................................................... 15 0 5 1.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATAGTCCATTTTGCTCTGCTTC...................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGCCTGGTCCATTTTGCTCT........................................................................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGTGCAAATCCATGTACCATTGC............................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TACCGTAGTCTGCACAGTTTGT................................................. 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................AGTGAGACTAGAGTA................................................................................................................................................................................................................................................................................................. 15 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................AGTCGGTAGAGCTTGTGGC.............................................. 19 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................AGTCGGTAGAGTATGTGGCG............................................. 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................AATTGTAGTACCGGT..................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................TGTGCAAATCCATGCACCATT................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................TGGGCAAATCCATGCACCACTG................................................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................AGTGAGACTAGAGT.................................................................................................................................................................................................................................................................................................. 14 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTCACATCTCACCATGATTCACTCTGATCTCATTTTAGATATCGGTTCTTGTTCGTTTGGTATGTATTGGACCCGTTTTTAACACCATGGCCAGGAAACGTTCCAATACGTACCAGTTTAATACCGTGACCAAGAAACGAGTCCAATACGTACCAGGTAAAACGAGACGAAGACTTTCGACTCATGAAACGTTCGTCTCGTTTTGCCTGGTACGTATTGGACCCGTTTTGGTACTTGGTAACGGTATTAGAATGGTATCAGACATCTCAAACACCGGTTGTTCCTCTGTCTGGATGGACATCAAGCACTCCTGTAAGGGGTT
**********************************************************************************************(((((((((((((((((((((((.(((((((((((((...((((.......))))..))))))))))))).)))))))))))))))))))))))*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139197
ovary		 SRR139210
testes		 SRR139170
heart		 SRR139175
kidney		 SRR139188
lung		 SRR139189
lung		 SRR139191
ovary		 SRR139195
ovary		 SRR139203
spleen		 SRR139208
testes		 SRR342894
heart		 SRR342901
heart		 SRR342899
heart		 GSM532879
cervix		 SRR342898
heart
.........................................................................................................................................................CCAGGTAAAACGAGAC.......................................................................................................................................................... 16 0 3 7.00 21 6 3 0 3 0 3 0 3 0 3 0 0 0 0 0
............................TCTCATTTTAGATATCG...................................................................................................................................................................................................................................................................................... 17 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................CGAGTCCAATACGTAC......................................................................................................................................................................... 16 0 2 2.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CAAGAAACGAGTCCAA................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................TACGTACCAGGTAAAAC............................................................................................................................................................... 17 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACTTTCGACTCATGAA...................................................................................................................................... 16 0 4 1.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GTCTCAAACCCCGGTTGTTCC...................................... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................GTCTCATTTTGCCTGG................................................................................................................ 16 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................GAAACGAGTCC.................................................................................................................................................................................. 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................ACATCTAGCACTCCCGTA....... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................AGGAAACGTTC........................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................TGACCAAGAAACGA...................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Generated: 04/21/2015 at 06:08 PM