ID:

clust_385_DIP2C

 Coordinate:

chr10:314515-314737 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.6 -19.1 -19.1
mature
star
  1. chr10:314658-314672 -
  2. chr17:73534027-73534041 -
  3. chr2:107289349-107289363 -
  4. chr20:2237578-2237592 -
  5. chr7:101232635-101232649 +
  6. chr8:47826737-47826751 +
  7. chr8:140527013-140527027 +

Sense Strand Reads

ACCCTTATAAAAGAGGCCTAAAGGAACATGTTCATCCACTCTGCAGGTGCCTCAATCTGGGACTTGCTAGACTCCAGAGCTGTGAGTAGCCGTTACCTAGTCTAAGGTATTTCACAGCAGGCGGAGCAGACGAGCACAGAGGGACTCGTATCGCCAGACCCAGCCTCGTCCTGATGCCTTCCCATGTGCAGGAGAGGCAGGCACTGGCCACAGACCATGGGAAGGACGGCGTCCAGCTGCTGGGTGATCCGGTGCAGCACAGGGAGGGCCAACCTCCCTCTCAGGCTTCTTTAAGGAAATCCTGGCTGGTGCCGAGTTTAGAA
****************************************************************************************************...((((((((.....((((((((.((..(((((..........)))))...)).....)).)))).))...)))))))).......**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553572
frontal-cortex		 SRR139170
heart		 GSM450601
brain		 GSM450602
brain		 SRR039623
liver		 SRR139171
kidney		 SRR139173
kidney		 SRR139180
liver		 SRR139196
ovary		 SRR139207
spleen		 SRR139210
testes		 SRR330904
skin		 SRR342899
heart		 TAX577742
breast		 TAX577743
breast		 SRR330905
skin		 SRR330908
skin		 SRR330909
skin		 SRR037876
fibroblast		 SRR342894
heart		 SRR342895
heart
......................................................................................................................................................TCGCCAGACCCAGCCTCGTCCT....................................................................................................................................................... 22 0 1 3.00 3 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GCTTCTTTAAGGAAA........................ 15 0 20 1.75 35 0 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TATAAAAGAGGCCTAAAGGAACATGTTCATC............................................................................................................................................................................................................................................................................................... 31 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................ATCCTGGCTGGTGCCGA........ 17 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAAGAGGCCTAAAGGAACATGTTCA................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACAGACCATGGGTAGGACGGCTTC.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AGCAGGCGGAGCAGA................................................................................................................................................................................................. 15 0 7 1.00 7 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGACCATGGGAAGGACGGCGTCC......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACAGACCATGGGAAGGACGG.............................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCATGGGAAGGACGGCGTCCAGC...................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AGGGACTCGTATCGC......................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CTTCTTTAAGGAAATCCTGGCTGGTGCCGAG....... 31 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCGCCAGACCCAGCCTCGTAA........................................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CATGGGAAGGACGGC............................................................................................. 15 0 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
............................................................................................................................AGCAGACTGGCACAGAGCGACTCG............................................................................................................................................................................... 24 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CAGCACAGGGAGGGACCACGTCCC............................................. 24 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................ACGAGCACAGAGGGA................................................................................................................................................................................... 15 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................AAAGGAACAGGCTCATCCACTT.......................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................CAGCAGGCGGAG..................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................GAAGGACGGCG............................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGGGAATATTTTCTCCGGATTTCCTTGTACAAGTAGGTGAGACGTCCACGGAGTTAGACCCTGAACGATCTGAGGTCTCGACACTCATCGGCAATGGATCAGATTCCATAAAGTGTCGTCCGCCTCGTCTGCTCGTGTCTCCCTGAGCATAGCGGTCTGGGTCGGAGCAGGACTACGGAAGGGTACACGTCCTCTCCGTCCGTGACCGGTGTCTGGTACCCTTCCTGCCGCAGGTCGACGACCCACTAGGCCACGTCGTGTCCCTCCCGGTTGGAGGGAGAGTCCGAAGAAATTCCTTTAGGACCGACCACGGCTCAAATCTT
****************************************************************************************************************************************...((((((((.....((((((((.((..(((((..........)))))...)).....)).)))).))...)))))))).......**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139171
kidney		 SRR139180
liver		 SRR139197
ovary		 GSM450602
brain		 SRR330906
skin		 SRR342898
heart		 SRR037876
fibroblast		 SRR342901
heart		 TAX577739
breast		 SRR039624
liver		 SRR342897
heart		 SRR330919
skin		 RoviraIPAgo2
breast		 SRR039619
liver		 SRR039623
liver		 SRR330908
skin		 SRR342895
heart		 SRR342896
heart		 SRR342900
heart		 TAX577743
breast
.........................................................................GGTCTCGACACTCAT........................................................................................................................................................................................................................................... 15 0 14 2.00 28 0 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................GAAGAAATTCCTTTAG...................... 16 0 13 1.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCGACATTGGATCAGATTGCAT...................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCTGCTCGTGTCTCCCTAGGCT.............................................................................................................................................................................. 22 3 5 0.40 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ACCACGGCTCAAATC.. 15 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CATCGGCTATGGGTCAGCTTC......................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTGGATCGGAGCCGGACTACGT................................................................................................................................................. 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........TTTCTCCGGAT............................................................................................................................................................................................................................................................................................................... 11 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........TTTTCTCCGGATT.............................................................................................................................................................................................................................................................................................................. 13 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ACCACGGCTGAAATCT. 16 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................GTCTCAACTCTCATCGGCA...................................................................................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................GACGACCCCCTAGGCAAC..................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................TCTGAGGTCTCGACACTC............................................................................................................................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................CTGCATGTGCATAGCGGTC...................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......ATTTTCTCCGGATT.............................................................................................................................................................................................................................................................................................................. 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................CGGAGTTAGACC....................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................GTCGACGACCCATAAGGCAAC..................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................GTCTGCTCGT........................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................CTGCCGCAGGT........................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................AGTCCGAAGAA................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Generated: 04/21/2015 at 06:32 PM