ID:

clust_306_PCNT

 Coordinate:

chr21:46387525-46387746 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-65.4 -65.4 -65.1
mature
star
  1. chr1:10705341-10705355 +
  2. chr10:18023560-18023574 +
  3. chr12:111470646-111470660 +
  4. chr14:28295643-28295657 +
  5. chr14:99525464-99525478 +
  6. chr16:28902125-28902139 +
  7. chr17:63693942-63693956 +
  8. chr17:66783651-66783665 +
  9. chr19:55246944-55246958 +
  10. chr20:54793769-54793783 +
  11. chr21:46387529-46387543 +
  12. chr22:42788558-42788572 +
  13. chr4:17048984-17048998 +
  14. chr4:27090576-27090590 +
  15. chr4:85555797-85555811 +
  16. chr4:146545919-146545933 +
  17. chr6:169155901-169155915 +
  18. chr9:38627830-38627844 +
  19. chr9:62662921-62662935 +
  20. chr9:66697452-66697466 +

Sense Strand Reads

GGGTGCAGAGGTGAGCCCACGGTCCCTGGACACTGGAGAGGCTGCCTGTCTTGAGGTGGGGTGGCTGCAGACGCCCTGATGCCTGCAGGAGTTGGGCATTTTGGGGGGTGGAAGTGTGCTGGGGAGCAGGTGGCATTCTCTCCGTCAAGCCCCTCCTCAGGACTCCCCCTCCCTGTTATTTGCCCAGAATCTTCGGTTTCGCGGGGCCTGCACGACACTGCCTCCCGTTGTCACCTCACGGTCCCCACGAATGAGTCCTCATCGTCTGCTCCTCAGGGTTGGGCTCTCTGGGGACAGAGCTGTGAGCAGAGTAGAGGGAGGG
***************************************.(((.(((((....((((((((((........))))))...))))))))))))((((((....((((((.(((...((.((((((((..((((((.........)))..))).)))))))).))))).)))))).......))))))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139184
lung		 GSM450609
brain		 GSM450601
brain		 GSM450604
brain		 RoviraIPAgo2
breast		 SRR039622
liver		 SRR095854
brain		 SRR139164
heart		 SRR139166
heart		 SRR139168
brain		 SRR139186
lung		 SRR139206
spleen		 SRR139207
spleen		 SRR191414
breast		 SRR191596
breast		 SRR191628
breast		 TAX577738
breast		 GSM450605
brain		 SRR039625
liver		 SRR342897
heart		 SRR330905
skin		 SRR330908
skin		 SRR330923
skin		 GSM450606
brain		 TAX577453
breast		 SRR037876
fibroblast		 SRR094129
uterus		 TAX577740
breast		 SRR191548
breast		 TAX577588
breast		 GSM450598
brain		 GSM450602
brain		 SRR015448
breast		 SRR040024
cervix		 SRR040028
cervix		 SRR330916
skin		 SRR330919
skin		 SRR330920
skin		 SRR330921
skin		 SRR342894
heart		 SRR342896
heart		 SRR342898
heart
......................................................................................................................................................CCCTCCTCAGGACTCCCCCTC....................................................................................................................................................... 21 0 1 5.00 5 0 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCCTCCTCAGGACTCCCCCT........................................................................................................................................................ 20 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCCTCCTCAGGACTCCCCCTCC...................................................................................................................................................... 22 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGTGGGGTGGCTGCA............................................................................................................................................................................................................................................................. 15 0 20 1.85 37 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GGACAGAGCTGTGAGAACAGTA......... 22 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGGAAGTGTGCTGGGGAGC................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GTCCCTGGACACTGGAGAGGCTGG..................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CCCCTCCTCAGGACTCCCCCTC....................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TCAAGCCCCTCCTCAG.................................................................................................................................................................. 16 0 3 1.00 3 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GGGGGGTGGAGGTGTGCTGGG....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCCTCCTCAGGACTCCCC.......................................................................................................................................................... 18 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GGACAGAGCTGTGAGTATAGTA......... 22 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGCGGTTTCGCGCGGCCT................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCTGCACGAC.......................................................................................................... 10 0 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GCCCTGATGCCTGCAG.......................................................................................................................................................................................................................................... 16 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTTCGGTTTCG......................................................................................................................... 11 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
...................................................................................................................................................................................................................................................................................................GGACGGAGCTGTGAGAATAGTA......... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATTTTGGGGGGTGGAACTCTG............................................................................................................................................................................................................ 21 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCCGGTCGCACTCTCTCCGTC................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGAGTGGAAGTGTGCTGGGCA..................................................................................................................................................................................................... 21 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GTGGAAGTGTGCTGG........................................................................................................................................................................................................ 15 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GGACAGAGCTGTGATAATAGTA......... 22 3 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AACGATACTACCTCCCGTTGT........................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGGTGGCATTCTCTCCAT................................................................................................................................................................................. 18 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ACCGGACTCCCCCCCCCTGTT................................................................................................................................................. 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATTTGCCAAGAATGTTCGG.............................................................................................................................. 19 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTTTGGGGGGTGGAACTCTG............................................................................................................................................................................................................ 20 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGTTGGCGCCTCTCGGTCCCC............................................................................ 21 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGAAGCGTGCTGGGGAG.................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TTTGGGGGGTGGAACTCTG............................................................................................................................................................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CATTTTGGGGGG...................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACACTGCCTCCC................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............GAGCCCACGG............................................................................................................................................................................................................................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................AGCTGTGAGCAGAG........... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCATGGTTGGGCTATCTGG............................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GGCCTGCACGTCACGGCC.................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................TGGACACTGGAG............................................................................................................................................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................CGGGGCCTGCACG............................................................................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TCGCGGGGCC.................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GAAGTGTGCTGGG....................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................GGACAGTGCTGTGAGAACAGTA......... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCCACGTCTCCACTCGGGTGCCAGGGACCTGTGACCTCTCCGACGGACAGAACTCCACCCCACCGACGTCTGCGGGACTACGGACGTCCTCAACCCGTAAAACCCCCCACCTTCACACGACCCCTCGTCCACCGTAAGAGAGGCAGTTCGGGGAGGAGTCCTGAGGGGGAGGGACAATAAACGGGTCTTAGAAGCCAAAGCGCCCCGGACGTGCTGTGACGGAGGGCAACAGTGGAGTGCCAGGGGTGCTTACTCAGGAGTAGCAGACGAGGAGTCCCAACCCGAGAGACCCCTGTCTCGACACTCGTCTCATCTCCCTCCC
****************************************************************************************************************************************.(((.(((((....((((((((((........))))))...))))))))))))((((((....((((((.(((...((.((((((((..((((((.........)))..))).)))))))).))))).)))))).......))))))*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR095854
brain		 SRR139173
kidney		 SRR139185
lung		 SRR139207
spleen		 SRR330919
skin		 TAX577453
breast		 SRR342894
heart		 SRR330905
skin		 SRR342898
heart		 TAX577589
breast		 SRR330913
skin		 TAX577740
breast
.............................................................................................................................................................................................................GGGATGTGCTGTGACGAAGGGC............................................................................................... 22 3 7 1.86 13 13 0 0 0 0 0 0 0 0 0 0 0
..CACGTCTCCACTCGGG................................................................................................................................................................................................................................................................................................................ 16 0 11 1.00 11 0 0 0 11 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AAACGGGTCTTAGAA................................................................................................................................. 15 0 10 1.00 10 0 10 0 0 0 0 0 0 0 0 0 0
......................................TCCGACGGACAGAAC............................................................................................................................................................................................................................................................................. 15 0 11 1.00 11 0 0 11 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGATGTGCTGTGACGTAGGGC............................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGATGTGCTGTGACGGGGGGC............................................................................................... 22 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGATGTGCTGTGACGGTGGGC............................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GCACTGCCAGGGGTGCTT....................................................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGGCAACAGTGGTGTGCCG................................................................................ 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGATGTGCTGTGATGGAGGGC............................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGATGTGCTGTGACAGAGGGC............................................................................................... 22 3 15 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGATGTGCTGTGTCGGAGGGC............................................................................................... 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GGGCCTTAGAAGCCTAGGCG........................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................GGGCAATAGTGGCGTGACAGG.............................................................................. 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................TTAGAAGCCAAGGCG........................................................................................................................ 15 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................AGGGGTGCTTAC..................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................CGGGCATTAGAAGCCAA............................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................TGACGGAGGGCA.............................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................CGGCCGGCCACAACCCGTAA.............................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Generated: 04/21/2015 at 08:43 PM