ID:

clust_295_CTNNBL1

 Coordinate:

chr20:37711106-37711327 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.2 -24.2 -24.1 -24.1

Sense Strand Reads

CTCATATGGTGTGCCCTACCCTAGCTGGACCTTTAAGACCCAACCTTTGGCCCTAGCCCATTATCTGGCCCATCTGATCCTCCTGTGAAAGGACAGTTTGAGCAAAACCTTGCTTGAGAAGCTTACAGACTTTCCAGTTCTGCAACTCTGACAGTCTGTGAGTTCTCGTCTTATCTCCTTTTGCCATAGTTTCCTAGTCATTCACCAGGGGTTGGTAAGGAAATAGGATGTTGTTTACCATTGTTTCTAGGGCATTGTAACATATGCTGCTAGTCAGGCTGTGAGACAATCCAGATTTTGGGGCGGTTAGCAAATTTCATTT
***************************************************************************************************************************************..................((...((((....((((((((.((((..(((((.....((((.((.....)).))))..))))))))).))))))))...))))..))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139208
testes		 TAX577453
breast		 RoviraIPAgo2
breast		 SRR139172
kidney		 SRR139201
placenta		 SRR139202
spleen		 SRR139204
spleen		 SRR191400
breast		 SRR191459
breast		 SRR191500
breast		 SRR191557
breast		 SRR191599
breast		 TAX577742
breast		 TAX577740
breast		 SRR342901
heart		 GSM450602
brain		 SRR039615
liver		 GSM450601
brain		 SRR037876
fibroblast		 SRR342896
heart
......................................................................................................................................................ACAGTCTGTGAGTTCTCGTCT....................................................................................................................................................... 21 0 1 3.00 3 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CAGTCTGTGAGTTCTCGTCTT...................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
CTCATATGGTGTGC.................................................................................................................................................................................................................................................................................................................... 14 0 8 1.00 8 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTTGGCCCTAGCCCATTATT................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTTCTCGTCTTATCTC................................................................................................................................................. 16 0 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACAGTCTGTGAGTTCTCGTC........................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCACCAGGGGTTGGTAAGGAAATAG................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACAGTCTGTGAGTTCTCGT......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....ATGGTGTGCCCTACC.............................................................................................................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATGGTGTGCCCTACCCTA........................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGAGGAAGTAGGATGTTGTTTA..................................................................................... 22 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................ACAGTCTGCGAGTTCTCTTCT....................................................................................................................................................... 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................ATATGCTGCTAGT................................................ 13 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
.......................................................................................................................................................................................................................TAAGGCAATAGGATGTCGGTTA..................................................................................... 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................AGGCTGTGAGACGATCCG............................. 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................TGCGTGAGAAGCTTACATAGT............................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................TGAGGTAGTAGGATGTTGTTTA..................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GTGAAAGGACAG.................................................................................................................................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................TAAGGTAATAGGATGTT.......................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GAGTATACCACACGGGATGGGATCGACCTGGAAATTCTGGGTTGGAAACCGGGATCGGGTAATAGACCGGGTAGACTAGGAGGACACTTTCCTGTCAAACTCGTTTTGGAACGAACTCTTCGAATGTCTGAAAGGTCAAGACGTTGAGACTGTCAGACACTCAAGAGCAGAATAGAGGAAAACGGTATCAAAGGATCAGTAAGTGGTCCCCAACCATTCCTTTATCCTACAACAAATGGTAACAAAGATCCCGTAACATTGTATACGACGATCAGTCCGACACTCTGTTAGGTCTAAAACCCCGCCAATCGTTTAAAGTAAA
*********************************************************************************..................((...((((....((((((((.((((..(((((.....((((.((.....)).))))..))))))))).))))))))...))))..))*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139164
heart		 SRR139170
heart		 SRR139182
liver		 SRR139166
heart		 SRR139177
liver		 SRR139179
liver		 SRR139188
lung		 SRR139212
testes		 SRR139218
thymus		 SRR139219
thymus		 SRR553573
cerebellum		 TAX577740
breast		 SRR342897
heart
.....................................................................................................................CTTCGAATGTCTGAAAG............................................................................................................................................................................................ 17 0 2 5.00 10 4 2 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................ATTGTATACGACGAT.................................................. 15 0 18 1.00 18 0 0 0 0 18 0 0 0 0 0 0 0 0
.....................................................................GGTAGACTAGGAGGAC............................................................................................................................................................................................................................................. 16 0 4 1.00 4 0 0 0 0 0 0 0 4 0 0 0 0 0
............................................................................................................GAACGAACTCTTCGAA...................................................................................................................................................................................................... 16 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCCCAACCATTCCT..................................................................................................... 15 0 13 1.00 13 0 13 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GTCTAAAACCCCGCCAATCG........... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AAAACCCCGCCAATCG........... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................CTGTCAGACACTCAA.............................................................................................................................................................. 15 0 12 1.00 12 0 0 0 0 0 0 0 0 12 0 0 0 0
................................................................................................................................................................................GGAAAACGGTATCAA................................................................................................................................... 15 0 13 1.00 13 0 0 0 0 0 13 0 0 0 0 0 0 0
.............................................................................................................................GTCTCAAAGGTCAAGACGTCGGGA............................................................................................................................................................................. 24 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................GTTGGTAACTGGGATCGGGCA..................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................TTGGAAACCGGGA............................................................................................................................................................................................................................................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 07:55 PM