ID:

clust_281_MAP2K2

 Coordinate:

chr19:4095351-4095572 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.9 -17.4 -17.3

Sense Strand Reads

CGAGAGCTTTCGGGAGAAGGCCACCTCTGACAGGGTGCAGCCCAGTTGGCATGTGGTGTCGGCCAGGCCTGCAGGGTGGGTGACCGGACAGGACAGTGAGGGGTAGAGAGGGCTGCAGCCGAGGGTCCCTGACGATGCCCAGGGCTGACCCCACCCTCTGTTCTCCTCCACAGCCACCTCCTAAGCTGCCCAACGGTGTGTTCACCCCCGACTTCCAGGAGTTTGTCAATAAATGGTAGGTGGAGCCGGGCTGCCCACACCCCTGGCCGGGACCCAGATGTGCCACTCCTTCCGGGTCCTGGGTGGGGCCCGTGGCCCAGCC
*******************************************************************************************************************.(((.(((((((((((........)))))........)))))).))).........................*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139188
lung		 SRR095854
brain		 SRR139173
kidney		 SRR139204
spleen		 SRR139207
spleen		 SRR342896
heart		 SRR039622
liver		 SRR040018
cervix		 SRR094132
uterus		 SRR139175
kidney		 SRR139177
liver		 SRR139186
lung		 SRR139195
ovary		 SRR139202
spleen		 SRR139205
spleen		 SRR139206
spleen		 SRR139209
testes		 SRR191620
breast		 SRR330921
skin		 SRR330922
skin		 SRR553572
frontal-cortex		 SRR037876
fibroblast		 TAX577741
breast		 GSM450600
brain		 SRR039623
liver		 SRR039624
liver		 SRR191619
breast		 SRR191623
breast		 SRR330907
skin		 SRR342899
heart		 SRR094131
uterus		 SRR039619
liver		 TAX577738
breast		 SRR039625
liver		 SRR342894
heart		 TAX577590
breast		 SRR040040
cervix		 SRR330906
skin		 SRR330908
skin		 SRR342895
heart		 SRR342898
heart		 TAX577588
breast		 TAX577743
breast		 TAX577744
breast
..................................................................................................................................GACGATGCCCAGGGCT................................................................................................................................................................................ 16 0 1 3.00 3 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGCCCAGGGCTGACC............................................................................................................................................................................ 15 0 20 2.70 54 27 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGCCCAGGGCTGACCC........................................................................................................................................................................... 16 0 7 2.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCACCCTCTGTTCTCCTCCACA...................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAATGGTAGGTGGAGCCGGGCTGCCC.................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCACCCTCTGTTCTCCTCCAC....................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGTTTGTCAATAAATG....................................................................................... 16 0 10 1.00 10 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AACGGTGTGTTCACCCCCG................................................................................................................ 19 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGTGAGGGGTAGAGAGGGCTGCATA........................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CCCACCCTCTGTTCTCCTCCACA...................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGCCCAACGGTGTGT......................................................................................................................... 15 0 3 1.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CAGTTGGCATGTGGTGTCGGCCA................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GAGCCACCTCCTAAGCTGCCCA.................................................................................................................................. 22 1 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CCGGACAGGACAGTGAGGG............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ACTTCCAGGAGTTTGTCAAT............................................................................................ 20 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CCAATAAATGGTAGGTGGAG............................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AGCTTTCGGGAGAAGGCC............................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAGCTGCCCAACGGTGTGTTCACC.................................................................................................................... 24 0 2 1.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GACGATGCCCAGGGCTGACC............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCACCCTCTGTTCTCCTCCA........................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCTCCTCCACAGCCACCTC.............................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCACCCCCGACTTCCAGGAGTTA.................................................................................................. 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTTCCAGGAGTTTGTCAATAA.......................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTCCTAAGCTGCCCAACGGTGTGTTCAC..................................................................................................................... 28 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CCCAACGGTGTGTTCACC.................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAGGTGTGTTCACCCCCGAC.............................................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGTGAGGGGCAGAGAGAGCTGCAG............................................................................................................................................................................................................ 24 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AGAGGTCTACAGCCGAGGGTC................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CAGGAGTTTGTCAATAAATG....................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AGAGGTCTACAGCCGACGGTC................................................................................................................................................................................................... 21 3 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGTGAGGGGTAGAGAGG................................................................................................................................................................................................................... 17 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................GTGGAGCCGGGC....................................................................... 12 0 20 0.25 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AGGAGTTTGTCAATAGATG....................................................................................... 19 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCAACCTCTGTTCTCCTCCATA...................................................................................................................................................... 22 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........TCGGGAGAAG............................................................................................................................................................................................................................................................................................................... 10 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GGCGACCTCTGACAGGGCG............................................................................................................................................................................................................................................................................................. 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GTGACCGGACAGG...................................................................................................................................................................................................................................... 13 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................GGCCCGGCTTGCAGGGTGGGTT................................................................................................................................................................................................................................................ 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................AGAGGTCTACAGCCGAGGATC................................................................................................................................................................................................... 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GAGGTCTACAGCCGACGGTC................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AGAGGTCTACAGTCGAGGGTC................................................................................................................................................................................................... 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CGGCCAGGCCTGCAG........................................................................................................................................................................................................................................................ 15 0 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GAGAGCTTTCGG..................................................................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................CAGGGGTAGAGAGGGCT................................................................................................................................................................................................................ 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................TGGAGCCGGGC....................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................GGGATGCAGCCGACGGTCAC................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........TTCGGGAGAA................................................................................................................................................................................................................................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................AGGTCTACAGCCGACGGTCC.................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................................GCCGGGACCC............................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................GAGGGCTACAGCCGACGAT.................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GACCGGACAGG...................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................CAGGAGAGTGAGGGGTCGAG...................................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCTCTCGAAAGCCCTCTTCCGGTGGAGACTGTCCCACGTCGGGTCAACCGTACACCACAGCCGGTCCGGACGTCCCACCCACTGGCCTGTCCTGTCACTCCCCATCTCTCCCGACGTCGGCTCCCAGGGACTGCTACGGGTCCCGACTGGGGTGGGAGACAAGAGGAGGTGTCGGTGGAGGATTCGACGGGTTGCCACACAAGTGGGGGCTGAAGGTCCTCAAACAGTTATTTACCATCCACCTCGGCCCGACGGGTGTGGGGACCGGCCCTGGGTCTACACGGTGAGGAAGGCCCAGGACCCACCCCGGGCACCGGGTCGG
***************************************************************************************************************************************.(((.(((((((((((........)))))........)))))).))).........................******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139207
spleen		 SRR139200
placenta		 SRR139201
placenta		 SRR330914
skin		 SRR342900
heart		 SRR342894
heart		 GSM450601
brain		 SRR330904
skin		 TAX577744
breast		 SRR553573
cerebellum		 SRR330905
skin		 SRR330915
skin		 SRR342897
heart		 SRR553576
testes		 TAX577743
breast
......................................................................................................................................................GGTGGGAGACAAGAG............................................................................................................................................................. 15 0 20 1.45 29 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GACGGGTTGCCACACAA........................................................................................................................ 17 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCCCCATCTCTCC................................................................................................................................................................................................................... 15 0 13 1.00 13 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTGGGGGCTGAAGGT......................................................................................................... 16 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGCTGAAGGT......................................................................................................... 10 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0
GCTCTCGAAAGC...................................................................................................................................................................................................................................................................................................................... 12 0 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................GCTATGGGTCCCGACTGC............................................................................................................................................................................ 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................CGACGGGTGTGGGGAC......................................................... 16 0 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................AGGTGTAGTTGGAGGATTCGAT...................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................CGGTAGAGACTGTCCCA.............................................................................................................................................................................................................................................................................................. 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................ACGGGTTGCC.............................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................GACGTCGGCTCCC..................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................AGGAGGTGTCGGTGGCG.............................................................................................................................................. 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................GTCCCACGTCGGGTC..................................................................................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................CGACGGGTTG................................................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................GTGGGGAGGCAAGAGGAGGTGT...................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GGTGTCGGTGGAGGA............................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Generated: 04/21/2015 at 07:28 PM