ID:

clust_264_RAB40B

 Coordinate:

chr17:82692383-82692604 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.8 -49.6 -49.0 -48.9
mature
star
  1. chr1:15447147-15447164 +
  2. chr10:101566668-101566685 +
  3. chr12:119500531-119500548 +
  4. chr14:101546072-101546089 +
  5. chr15:60001208-60001225 +
  6. chr16:69924707-69924724 +
  7. chr17:57131202-57131219 +
  8. chr18:59321522-59321539 +
  9. chr18:79396798-79396815 +
  10. chr19:55088807-55088824 +
  11. chr2:190343152-190343169 +
  12. chr20:1185817-1185834 +
  13. chr20:64038256-64038273 +
  14. chr22:41133157-41133174 +
  15. chr22:50731357-50731374 +
  16. chr3:47371383-47371400 +
  17. chr7:1291014-1291031 +
  18. chr7:134853860-134853877 +
  19. chr9:97389581-97389598 +
  20. chr9:127113500-127113517 +
  21. chr5:2308189-2308206 +
  22. chr1:154957258-154957275 -
  23. chr1:156082223-156082240 -
  24. chr10:114534498-114534515 -
  25. chr12:45051527-45051544 -
  26. chr14:25430737-25430754 -
  27. chr14:103057773-103057790 -
  28. chr16:81415150-81415167 -
  29. chr17:50695210-50695227 -
  30. chr17:82692587-82692604 -
  31. chr19:3696603-3696620 -
  32. chr2:25790316-25790333 -
  33. chr2:238251823-238251840 -
  34. chr3:108089997-108090014 -
  35. chr4:2536568-2536585 -
  36. chr6:11972823-11972840 -
  37. chr7:17975811-17975828 -
  38. chr7:47937248-47937265 -
  39. chr7:128915906-128915923 -
  40. chr8:86342707-86342724 -
  41. chr9:131047617-131047634 -

Sense Strand Reads

TGGGGTGAGGCCTGAGGCAGGGATCGAGACACACTTTTTTCAGTCGGATGCCCCCCACCCCCACCCCGCATCGCACGGCCACCGTTGTCCCAGCTGAGAGCCCGCCTGTGGGTCTGGGTCTGCACCGTTGGCCCGCCTGTCTCTTGTGTGTGTGCCCCGGGTCAGACTCTGTCTTCTGTGGATGGGCATGCCCTGTGCTGGCCAGGGCAGTCAGATGCATCTTGTCCTTGCTCAGGCAGCTGTGCCCAGGTGTTCCCTTTGCTCCGATACGGTCAGCGAGGCCTGGATTCTCCCTCCTGGGCGTTTGTCTTCCTCTCGGTCT
***********************************..............((.((((((....((((.((((((((((((((.((.((((((((......((((......)))))))))...))).)).)))))............))))).))))...))))...............))))..))))*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139216
thymus		 SRR139219
thymus		 SRR330923
skin		 SRR553572
frontal-cortex		 TAX577453
breast		 SRR139174
kidney		 SRR095854
brain		 SRR342895
heart		 SRR139164
heart		 SRR191523
breast		 SRR191615
breast		 SRR191621
breast		 SRR342900
heart		 TAX577579
breast		 SRR040024
cervix		 SRR094132
uterus		 TAX577745
breast		 SRR037876
fibroblast		 RoviraIPAgo2
breast		 SRR330906
skin		 SRR330920
skin		 SRR342894
heart		 SRR342899
heart		 SRR330919
skin		 SRR040014
cervix		 SRR553575
Kidney		 SRR330915
skin		 SRR553573
cerebellum		 SRR330911
skin		 TAX577738
breast		 SRR039623
liver		 TAX577589
breast		 SRR330910
skin		 TAX577744
breast		 TAX577740
breast		 SRR444045
skin		 SRR330913
skin		 SRR330916
skin		 SRR330917
skin		 SRR342898
heart		 SRR444048
skin
......................................................................................................................................................TGTGCCCCGGGTCAGACTCTGT...................................................................................................................................................... 22 0 1 6.00 6 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CCCCCCACCCCCACCCCG.............................................................................................................................................................................................................................................................. 18 0 20 4.10 82 41 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GTGCCCCGGGTCAGACTCTGT...................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GGATGCCCCCCACCC...................................................................................................................................................................................................................................................................... 15 0 20 1.50 30 0 0 0 0 0 27 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTGCCCCGGGTCAGACTCTG....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CGTCTGGGTCTGCACCGTTG................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGGATCGCACGGCCATCGT............................................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTGCCCCGGGTCAGA............................................................................................................................................................ 16 0 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTTTGTTCAGTCGGATGCCC............................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GTGCCCCGGGTCAGACTCT........................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTGCCTCGGGTCAGAC........................................................................................................................................................... 17 1 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CGCCTGTGGGTCAGGGTCCG........................................................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGGATGCCCCCCACC....................................................................................................................................................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTTCAGTCGGATG................................................................................................................................................................................................................................................................................ 13 0 12 0.25 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ATCACACGGCCACCGTTTTC......................................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCAGATACTGTCTTCTGTGGAT........................................................................................................................................... 22 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CGATACGGTCAG.............................................. 12 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGGATCGCACGGCCATCG.............................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTTTCAGTCGGATG................................................................................................................................................................................................................................................................................ 14 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CGGTCAGCGAGGC........................................ 13 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ATCGCATTGCCACGGTTGTCC........................................................................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTGTCTTCTGTGGATG.......................................................................................................................................... 16 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CCTGGATTCTCCCTCC......................... 16 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGGTTGGCCCGCCTGTCCC................................................................................................................................................................................... 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CTTTCAGTCGGATGCTCCC........................................................................................................................................................................................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ATCGCAGGGCCACCAATGTCC........................................................................................................................................................................................................................................ 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ATCGCACGGCCAGGGTTTTCC........................................................................................................................................................................................................................................ 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCTGGCTTCTGTGGATGGG........................................................................................................................................ 19 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CCGCCTGTGGGTCGGGG............................................................................................................................................................................................................ 17 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CTTCCTCTCGGTCT 14 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TCGTTTGTCGTCCTCTTGGTC. 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................CCCCCACCCCCACGCCGCA............................................................................................................................................................................................................................................................ 19 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................ATCGCACGGCCA................................................................................................................................................................................................................................................. 12 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................GGATGCCCCCCACC....................................................................................................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CCCCCCACCCCCACCCCGC............................................................................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................TTCTCCCTCCT........................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................CCCCCACCCCCACCCCGC............................................................................................................................................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................TCGCACGGCC.................................................................................................................................................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................CAGTCGGATGC............................................................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................GGTCAGACTC......................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CGTTGTCCCAGCT................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCCCACTCCGGACTCCGTCCCTAGCTCTGTGTGAAAAAAGTCAGCCTACGGGGGGTGGGGGTGGGGCGTAGCGTGCCGGTGGCAACAGGGTCGACTCTCGGGCGGACACCCAGACCCAGACGTGGCAACCGGGCGGACAGAGAACACACACACGGGGCCCAGTCTGAGACAGAAGACACCTACCCGTACGGGACACGACCGGTCCCGTCAGTCTACGTAGAACAGGAACGAGTCCGTCGACACGGGTCCACAAGGGAAACGAGGCTATGCCAGTCGCTCCGGACCTAAGAGGGAGGACCCGCAAACAGAAGGAGAGCCAGA
***************************************************************************************************************************************..............((.((((((....((((.((((((((((((((.((.((((((((......((((......)))))))))...))).)).)))))............))))).))))...))))...............))))..))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139195
ovary		 SRR139173
kidney		 SRR139176
kidney		 SRR139178
liver		 SRR139205
spleen		 SRR191554
breast		 SRR039625
liver		 SRR330915
skin		 TAX577740
breast		 SRR330913
skin		 SRR330904
skin		 GSM450610
brain		 TAX577744
breast		 SRR342895
heart		 GSM450605
brain		 SRR330912
skin		 SRR330919
skin		 SRR342898
heart
....................................................GGGGTGGGGGTGGGG............................................................................................................................................................................................................................................................... 15 0 20 134.70 2694 2694 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GGGGGTGGGGCGTAG.......................................................................................................................................................................................................................................................... 15 0 20 1.00 20 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ACGGGACACGACCGGT...................................................................................................................... 16 0 15 1.00 15 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................AAAAAGTCAGCCTGCGTGG............................................................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
ACCCCACTCCGGACTCC................................................................................................................................................................................................................................................................................................................. 17 0 17 1.00 17 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................AGAAGGAGAGCCAGA 15 0 10 1.00 10 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AACCGGGCGGTCAGAAAACA............................................................................................................................................................................... 20 2 9 0.44 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0
......................................AAGTCAGCCTAAGGGGG........................................................................................................................................................................................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GGGGGGTGGGGGTGGGG............................................................................................................................................................................................................................................................... 17 0 20 0.25 5 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0
..................................AGAAAAGTCAGCCTAAGGGG............................................................................................................................................................................................................................................................................ 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ACCGAGGCTATGCC.................................................. 14 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCATCAGTCTACGTAGA.................................................................................................... 17 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................ATGCCAGGCCCTACGGACCTA.................................. 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................ACAGGGGATGGGGGTAGGGCGTA........................................................................................................................................................................................................................................................... 23 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................GGCTATGCCAGCC.............................................. 13 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................GGCTATGCCA................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................AAGTCAGCCT.................................................................................................................................................................................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................TCTCGGGCGGAC...................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................CGGGGCCCAGTCT............................................................................................................................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Generated: 04/21/2015 at 07:46 PM