ID:

clust_261_LLGL2

 Coordinate:

chr17:75540275-75540496 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.7 -20.6 -20.1

Sense Strand Reads

AGGCCTGGCTTCCTGAAGTTTCTCTGCAGAGAACCTGCTTGTCTGGGGTGGGGAGCTGAGGAGCCACCTGGAGGTGAGGCCCGCCAGGTCTAGACCAGCCCCCTCTTCAAGGAAGCGTGGTGCTTTTCCATGCCTTGACCTGGGCAGTGGGTTGATTGGAGTGAGGGGATACCATGCCCACCCTGCCTTGGTCCTCCTGGCTCCATCACCCCATGCCCATGAGGTCCCAGCCCCGTGTGGGAAGAGCAGCAGGTCCACACAAGGCCACCAGCCCTGCCCAGCCAGACCTCGCCAGCACCCTGTCAGCAGCGGCCAGTCCCCA
*******************************************************************************************************************(((((((((((((.((.((((((((((.....))))))))..)).)))))))).))))))).........***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR330904
skin		 GSM450609
brain		 SRR139175
kidney		 SRR139208
testes		 SRR191606
breast		 SRR037876
fibroblast		 TAX577744
breast		 TAX577589
breast		 TAX577741
breast		 SRR040040
cervix		 GSM450600
brain		 TAX577738
breast		 SRR330905
skin		 SRR342896
heart		 SRR342898
heart		 GSM450602
brain		 GSM450603
brain		 GSM450610
brain		 GSM532875
cervix		 SRR095854
brain		 SRR330913
skin		 SRR342900
heart		 SRR444048
skin
........................................................................................................................................................TGATTGGAGTGAGGGGATACCATGT................................................................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGCCTTGACCTGGGCAG............................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................GTGGGAAGAGCAGCAGGTCGA................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CCTCGCCAGCACCCT..................... 15 0 7 1.00 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTGATTGGAGTGAGGGGAT........................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTGGGCAGTGGGTTGATTG.................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCAAGGAAGCCTGGTGATTTT................................................................................................................................................................................................... 22 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGAAGGAAGCCTGGTGCTTTT................................................................................................................................................................................................... 22 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GGGTGGCGAGCTGAGGAG................................................................................................................................................................................................................................................................... 18 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCTGAGGAGCCA................................................................................................................................................................................................................................................................ 12 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGGGCAGTGGGTTGATAGGC.................................................................................................................................................................. 21 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GTCAAGGAAGCGTGGTGGTTCT................................................................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GGAGGTGAAGCACGCCAGGTGT....................................................................................................................................................................................................................................... 22 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TTGAAGGACGCCTGGTGCTTTT................................................................................................................................................................................................... 22 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCAAGTAAGCGTGGTGATATT................................................................................................................................................................................................... 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCAAGGAAGCCTTGTGCTTGT................................................................................................................................................................................................... 22 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................AGGCCCGCCCGGTCTACA.................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................TACGGCAGTGGGTTGATTGGA.................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....CTGGCTTCCT.................................................................................................................................................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................CCCGTGTGGG................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................TGAGGCCCGCCA............................................................................................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTCCTCCTGG.......................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................CCCGCCAGGT......................................................................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTGGGCAGTGGATTGATTGGAT................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................GTGGGAAGAGCA.......................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................CTGGGCAGTGGGT.......................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................TTCGGTAGTGGGTTGATTGGA.................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCCGGACCGAAGGACTTCAAAGAGACGTCTCTTGGACGAACAGACCCCACCCCTCGACTCCTCGGTGGACCTCCACTCCGGGCGGTCCAGATCTGGTCGGGGGAGAAGTTCCTTCGCACCACGAAAAGGTACGGAACTGGACCCGTCACCCAACTAACCTCACTCCCCTATGGTACGGGTGGGACGGAACCAGGAGGACCGAGGTAGTGGGGTACGGGTACTCCAGGGTCGGGGCACACCCTTCTCGTCGTCCAGGTGTGTTCCGGTGGTCGGGACGGGTCGGTCTGGAGCGGTCGTGGGACAGTCGTCGCCGGTCAGGGGT
*****************************************************************************************************************************************(((((((((((((.((.((((((((((.....))))))))..)).)))))))).))))))).........******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139183
lung		 SRR139168
brain		 SRR139179
liver		 SRR139185
lung		 SRR139196
ovary		 SRR139206
spleen		 SRR139216
thymus		 SRR139219
thymus		 GSM450601
brain		 TAX577744
breast		 SRR330904
skin		 SRR330915
skin		 SRR330917
skin		 SRR191427
breast		 SRR330905
skin		 SRR330914
skin		 SRR330916
skin		 SRR330923
skin		 GSM450599
brain		 GSM450605
brain		 SRR330913
skin		 SRR342901
heart		 SRR039616
liver		 SRR191397
breast		 SRR330907
skin		 SRR342894
heart		 SRR342895
heart		 SRR342896
heart		 SRR342897
heart		 SRR342900
heart
..........................................................................................................................................................TAACCTCACTCCCCTAT....................................................................................................................................................... 17 0 2 5.00 10 4 0 2 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GGGGGATAAGTTCCTTC............................................................................................................................................................................................................... 17 1 9 1.11 10 0 0 0 0 0 0 0 0 0 0 2 2 2 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GGTGGTCGGGACGGGTC......................................... 17 0 4 1.00 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CCTCGACTCCTCGGT................................................................................................................................................................................................................................................................ 15 0 20 1.00 20 0 0 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCCAGGTGTGTTCCG......................................................... 15 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTAACCTCACTCCCCTAT....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ACCTCACTCCCCTAT....................................................................................................................................................... 15 0 16 1.00 16 0 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GTACGGGTGGGACGGAAC.................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GGTCGCTCTGGAGCGGT............................ 17 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCCAGGGACGGGGCACACGC................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AGGTACGGAACTGG...................................................................................................................................................................................... 14 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1
...............................................................................................................................................................................................................................................................CTGTTTTCCGGCGGTCGGGACG............................................. 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCACGCTCCTATGGTACGG................................................................................................................................................ 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGTCGTCCAGGTGTG.............................................................. 15 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......CCGAAGGACTTCAAA............................................................................................................................................................................................................................................................................................................. 15 0 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................ACGCGTCAGTCTGGAGCG.............................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................AACAGACCCCCCCCCTCGGCCC...................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................ACGGGTCGGTCTTGAGAGGTC........................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CGCCGGTCAGGG.. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................CCCTTCTCGTCGTCC..................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................AGGGTCGGGGC....................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Generated: 04/21/2015 at 07:19 PM