ID:

clust_236_TRAP1

 Coordinate:

chr16:3703348-3703569 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.4 -32.2 -31.8
mature
star
  1. chr1:177663426-177663440 +
  2. chr16:3703387-3703401 -
  3. chr2:11408911-11408925 -
  4. chr2:16302016-16302030 +
  5. chr5:41718939-41718953 -
  6. chr8:107818716-107818730 +
  7. chr9:86749969-86749983 -
  8. chrY:6792825-6792839 -

Sense Strand Reads

GACATGCCTCAGACAACACCCCTCCTGGTGGCAAGTCCATTAGCCAGTTTTTGGGTGTCCTTGCAGAGATCTGCGTGGCATATGAGAATAGCTATGCATGCATGTATCACATAACATGTATATGCATTTGAACACCATGGTAGTGTGTGCAAACCGCTGTTCTACCTCTAGTGTTTTTTCTTTGTGTTAGAGGTAATTCAGCATCAGCACACATTACACAGCATTGTCCCATTTCTCTATAATCCCATGCTTTCCAAGTGTTACCTTACGTCTGTAGTTTACTTGTTAGTCCTCCGCTTGTGAGTATGTAGCATATGTAACA
***************************************************************************************************************************************..(((((((((((((.....((((...(((((((((...............)))))))))...))))....))))))))))).))............................************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total RoviraIPAgo2
breast		 SRR139195
ovary		 GSM450603
brain		 SRR039190
blood		 SRR039611
liver		 SRR139171
kidney		 SRR139174
kidney		 SRR139188
lung		 SRR139197
ovary		 SRR139199
placenta		 SRR139201
placenta		 SRR139202
spleen		 SRR139214
thymus		 SRR191408
breast		 SRR191559
breast		 SRR191605
breast		 SRR191610
breast		 SRR342897
heart		 TAX577738
breast		 TAX577579
breast		 SRR095854
brain		 TAX577746
breast
......................................................................................................................................................AAACCGCTGTTCTACCTCTAGT...................................................................................................................................................... 22 0 1 5.00 5 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TCCGCTTGTGAGTAT............... 15 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AAACCGCTGTTCTACCTCTAG....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TGTGCAAACCGCTGTTCTACCTCTAGT...................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGCATTGTCCCATT......................................................................................... 15 0 8 1.00 8 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................ACACCATGGTAGTGTGTGC............................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TAGAGGTAATTCAGCATCAGC.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGCATTGTCCCATTTC....................................................................................... 17 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACCATGGTAGTGTGTGC............................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................ATCCCATGCTTTCCA.................................................................. 15 0 8 1.00 8 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTGCAAACCGCTGTTCTCCCTCTA........................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGAGATCTGCGTGGCATATGAGAATAG....................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTGCAAACCGCTGTTCTACCTCTA........................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AACCGCTGTTCTACCTCT......................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTAGAGGTAATTCAGCATCAGC.................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................AACACCATGGTAGTGTGTGC............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CAAGTGTTACCGTTCGTCTGTT.............................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................CCACCATGGTAGTGTGTGC............................................................................................................................................................................ 19 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................GCGTCTGTAGTTTAGTCGTTA.................................. 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................TTTTTTCTTTGTGTTCGCGTTA............................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................GCAGAGGTCTGCGTGGTAT................................................................................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTGTACGGAGTCTGTTGTGGGGAGGACCACCGTTCAGGTAATCGGTCAAAAACCCACAGGAACGTCTCTAGACGCACCGTATACTCTTATCGATACGTACGTACATAGTGTATTGTACATATACGTAAACTTGTGGTACCATCACACACGTTTGGCGACAAGATGGAGATCACAAAAAAGAAACACAATCTCCATTAAGTCGTAGTCGTGTGTAATGTGTCGTAACAGGGTAAAGAGATATTAGGGTACGAAAGGTTCACAATGGAATGCAGACATCAAATGAACAATCAGGAGGCGAACACTCATACATCGTATACATTGT
**************************************************************************..(((((((((((((.....((((...(((((((((...............)))))))))...))))....))))))))))).))............................*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139195
ovary		 SRR039623
liver		 SRR139186
lung		 SRR139188
lung		 SRR139201
placenta		 SRR139207
spleen		 SRR139219
thymus		 SRR342899
heart		 SRR191607
breast		 TAX577744
breast		 SRR342898
heart		 SRR342896
heart		 RoviraIPAgo2
breast		 SRR039612
liver		 SRR342894
heart		 SRR342897
heart		 SRR342901
heart		 TAX577738
breast
.......................GGACCACCGTTCAGG............................................................................................................................................................................................................................................................................................ 15 0 7 1.00 7 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTGGGCGACAAGATGGAGAT........................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGACAAGATGGAGATC....................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................AACGTCTCTAGACGCAC..................................................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AAACACAATCTCCAT............................................................................................................................... 15 0 12 1.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CTCTTATCGATACG................................................................................................................................................................................................................................. 14 0 13 1.00 13 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CACAAAAAAGAAACACA....................................................................................................................................... 17 0 6 1.00 6 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................GCGAACACTCATACATCG.......... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTAGTCGTGTG.............................................................................................................. 11 0 20 0.60 12 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0
.....CGGAGTCTGTTGT................................................................................................................................................................................................................................................................................................................ 13 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................GGCGACAAGATGG............................................................................................................................................................ 13 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TCGTAGTCGTGTTTAATGC........................................................................................................ 19 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TCGATACGTCCGTACATAACGT................................................................................................................................................................................................................... 22 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................CCCACAAGTTTGGCGAC................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................AGGGTACGAA...................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................TCGAAAACCCACAGGAAAGT................................................................................................................................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................TCGATAAGTACGTAAATAGCGT................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................CCCACAGGAACGTATCCAGTC......................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................GGACGACCGCCGTTCAGGTCA......................................................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................CGAAAGGTTC................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................CAAGATGGAGATCA...................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Generated: 04/21/2015 at 07:03 PM