ID:

clust_184_UBE2Q1

 Coordinate:

chr1:154551442-154551663 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.5 -48.8 -48.8

Sense Strand Reads

ACAGCACACACCCCTACGGGCTGGGTGATAGACATGATGTGGCCCTTTCATTCTGCTGGGCTGGGTCTGCACCCACTGACCTAGACAGACAGGTGGTGGCAGTGCTGGGGGCAAAGGGCAAGGGCCCTCCTATAGACACAGCTGATTGCCCAGAGGACAAGCATGAGGGTTCTCTGGAAGCTCCATCTGGACCTGCTTGCCTTGTCCTTCCCTTCACCCAGGGCTGGAGCAGTGCCTACTCCATAGAGTCAGTGATCATGCAGATCAGTGCCACACTGGTGAAGGGGAAAGCACGAGTGCAGTTTGGAGCCAACAAAGTAAG
****************************************************************************************************************************************....((..(((((((((((((((((((...((((((..((((...))))...))))))...)).)))))))).((((......)))))))).)))))))..((((....))))((.(((((.....))))).))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039622
liver		 SRR039625
liver		 RoviraIPAgo2
breast		 SRR139195
ovary		 SRR139205
spleen		 SRR139210
testes		 SRR139211
testes		 SRR342897
heart		 SRR553576
testes		 TAX577589
breast		 GSM450604
brain		 GSM450605
brain		 GSM450608
brain		 GSM450609
brain		 SRR039612
liver		 SRR039620
liver		 SRR039621
liver		 SRR039623
liver		 SRR094131
uterus		 SRR094132
uterus		 SRR139165
heart		 SRR139167
heart		 SRR139171
kidney		 SRR139179
liver		 SRR139203
spleen		 SRR139209
testes		 SRR342895
heart		 SRR342899
heart		 SRR553573
cerebellum		 TAX577740
breast		 TAX577745
breast		 GSM450601
brain		 SRR040022
cervix		 SRR342894
heart		 SRR553572
frontal-cortex		 GSM450610
brain		 SRR037876
fibroblast		 SRR330905
skin		 SRR342900
heart		 TAX577739
breast
.......................................................................................................................................................AGAGGACAAGCATGAGGGTT....................................................................................................................................................... 20 0 1 4.00 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TGCCTACTCCATAGAGTCAGTGA................................................................... 23 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGGGCTGGAGCAGTGCC...................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................ATAGAGTCAGTGATCATGCAGA.......................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TGGTGAAGGGGAAAGCACGA.......................... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ACGAGTGCAGTTTGGAGCC........... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TATAGACACAGCTGA................................................................................................................................................................................. 15 0 9 1.00 9 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCAGTGCCTACTCCAT.............................................................................. 16 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAGGACAAGCATGAGGGTTC...................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................CCATAGAGTCAGTGATCATGCAGATC........................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GGCAAGGGCCCTCCT............................................................................................................................................................................................... 15 0 14 1.00 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGGCTGGAGCAGTGCCTACTCCATA............................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGAGCAGTGCCTACTCCATAGAGTCAGT..................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAACAGGGCTGGAGCAGTGCCTACTCAATAGA........................................................................... 32 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAGGACAAGCATGAGGGTTA...................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAGGAAAAGCATGAGGGTTA...................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TGCCTACTCCATAGAGTCAG...................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAACAGGGCTGGAGCAGTGCCTACTCAA............................................................................... 28 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGGCTGGAGCAGTGCCT..................................................................................... 18 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................AAGGGGAAAGCACGAGTGC...................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GGCAGTGCTGGGGGCAAAGGGCAAGGGC..................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAGGACAAGCATGAGGGTTT...................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAGGACAAGCATGAGGGTTA...................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TGGGGAAGGGGAAAGCACGAGT........................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GTGCCTACTCCATAGAGTCAGTGAT.................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAACAGGGCTGGAGCAGTGCCTACTCCATA............................................................................. 30 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TCCATAGAGTCAGTGATCATGCAGATCAGT..................................................... 30 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TAGAGTCAGTGATCATGCAGATCAGTG.................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAGGACAAGCATGAGGGTTCT..................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGTGCCTACTCCATAGAGTCAGTGATC................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TACTCCATAGAGTCAGTGATCATGCAGAT......................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTCAGTGCTGGGGGCAAAGGGCAAGGGC..................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGAGCAGTGCCTACTCCATAGAGTCAGTGAT.................................................................. 31 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAACAGGGCTGGAGCAGTGCCTACTCCA............................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGGCTGGAGCAATGACTACTCC................................................................................ 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TCAGTGATCATGCAGA.......................................................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGGCTGGAGCAGTGCCTAC................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................AGAGGACAAGCGTGAGGGTTC...................................................................................................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACAGGGCTGGAGCAGTGCC...................................................................................... 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCAGGGCTGGAGCAGTG........................................................................................ 17 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................AAACAGGGCTGGAGCAGTGCC...................................................................................... 21 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................GAGCTAGTCAGACGGGTGGTG................................................................................................................................................................................................................................ 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........CCCTACGGGCTGGG......................................................................................................................................................................................................................................................................................................... 14 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................GTGCTGGGGGCAAAG.............................................................................................................................................................................................................. 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................TGGGTGATAAGCATGATGTGGT....................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................AACAGGGCTGGAGCAGTGCC...................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............ACGGGCTGGGT........................................................................................................................................................................................................................................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGTCGTGTGTGGGGATGCCCGACCCACTATCTGTACTACACCGGGAAAGTAAGACGACCCGACCCAGACGTGGGTGACTGGATCTGTCTGTCCACCACCGTCACGACCCCCGTTTCCCGTTCCCGGGAGGATATCTGTGTCGACTAACGGGTCTCCTGTTCGTACTCCCAAGAGACCTTCGAGGTAGACCTGGACGAACGGAACAGGAAGGGAAGTGGGTCCCGACCTCGTCACGGATGAGGTATCTCAGTCACTAGTACGTCTAGTCACGGTGTGACCACTTCCCCTTTCGTGCTCACGTCAAACCTCGGTTGTTTCATTC
****************************************************....((..(((((((((((((((((((...((((((..((((...))))...))))))...)).)))))))).((((......)))))))).)))))))..((((....))))((.(((((.....))))).))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139207
spleen		 SRR139166
heart		 SRR139176
kidney		 SRR139188
lung		 SRR139210
testes		 TAX577740
breast		 TAX577743
breast		 SRR553572
frontal-cortex		 TAX577588
breast		 SRR342901
heart		 SRR330919
skin		 SRR330905
skin		 SRR342900
heart		 SRR330912
skin		 GSM450601
brain		 SRR037876
fibroblast		 SRR095854
brain		 SRR330907
skin		 SRR330908
skin		 SRR330914
skin		 SRR330920
skin		 SRR330922
skin		 SRR342894
heart		 SRR342896
heart
...............................................................................................CACCGTCACGACCCC.................................................................................................................................................................................................................... 15 0 20 2.15 43 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCTGTTCGTCCTCCCAAGAAAC.................................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CCCGTTCCCGGGAGG................................................................................................................................................................................................ 15 0 14 1.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TGTGGGGATGCCCGAC........................................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ACGGGTCTCCTGTTCG................................................................................................................................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGACCTTCGAGGTAGACCTGGACGAAC........................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGTGTGGGGATGCCCGAC........................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTCCCCTTTCGCGCT.......................... 15 1 20 0.70 14 0 0 0 0 0 0 0 5 0 0 2 3 0 0 0 0 0 1 1 1 1 0 0 0
...........................................................................................................................................................................................................................................................AACTAGTACGCCTAGCCACGGT................................................. 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGCTGACTGGATCTGTCCG........................................................................................................................................................................................................................................ 20 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTCCCCTTTCGCGCTCGCG...................... 19 2 20 0.10 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCCCTTTCGTGCT.......................... 14 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........GGGATGCCCG............................................................................................................................................................................................................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACTAACGGGTCTC....................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................GTGTCGACTAACG............................................................................................................................................................................. 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCTTCGAGGTAGA...................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGACCCCCGTTTCCC............................................................................................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCCTGTTCGTAC............................................................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................CCCCTTTCGTGCT.......................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................GTCCCCTTTCGTGCTC......................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CGTGCTCATGTCTAACCT.............. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CTCAGTCACTAGTA............................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
TGTCGTGTGTGGGGACGCCAT............................................................................................................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Generated: 04/21/2015 at 06:07 PM