ID:

clust_1786_BCAS4

 Coordinate:

chr20:50802383-50802628 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.1 -34.1 -33.8
mature
star
  1. chr1:226304442-226304458 +
  2. chr20:50802471-50802487 +
  3. chr6:14252547-14252563 -

Sense Strand Reads

CCTGCATCAGAACCTTCCGGGGCATGAGGAGCCAGGGGCAAGGCAGGTGCTGGGAGAGGCAGCTTTTCTCAGATGTGCCTGACTTTCTACCCACAAAACCTGCCCAGGAGTGGGGGGAGCCTTCCTCAGGGCTCTGGCAGCCTCTCCTCACAGGACATGGCCTTGCTTTAGGTGAGGGTCTGCCTAGAGCCTTGGATGAAGGTCTCCCATCCGGCCCAGCTTCAGCGTCACACAGAGGCCTTAAAACAAACACGTTAGGCCAGGCATGTTGGCCCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCAGGTGGATCACTTGAGGTTAGGAGTTCCAGACCAGC
*********************************************************((((..(((....)))..))))..........(((((....(((....))).))))).((((((((....))))))))(((((((..((((...))))...)))..))))...******************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total RoviraIPAgo2
breast		 SRR139173
kidney		 SRR139176
kidney		 SRR139219
thymus		 SRR553574
heart		 TAX577740
breast		 GSM450605
brain		 SRR037876
fibroblast		 SRR330914
skin		 SRR342900
heart		 GSM450606
brain		 SRR039623
liver		 SRR191422
breast		 SRR330915
skin		 SRR342895
heart		 TAX577743
breast
........................................................................ATGTGCCTGACTTTCTACCCACAAAACCTGC................................................................................................................................................................................................................................................... 31 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AACCTGCCGGGGCATGAG.............................................................................................................................................................................................................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AGCCTCTCCTCACAGGA............................................................................................................................................................................................... 17 0 3 1.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACAAAACCTGCCCAG............................................................................................................................................................................................................................................... 15 0 17 1.00 17 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCGGCCCAGCTTCAG......................................................................................................................... 15 0 7 1.00 7 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................ACGTTAGGCCCCGAATGTTGG.......................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CACAGGACATGGCCTTG..................................................................................................................................................................................... 17 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGTATCCCGTCCGGCCCATC.............................................................................................................................. 21 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................CGAGGCATGTCGGCCCACGGC.................................................................. 21 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................GAACCTGCCCAGGAGAGGGGG...................................................................................................................................................................................................................................... 21 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................CGAGGGAGCTTTTCTCATATGT.............................................................................................................................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............CCTTCCGGGG.................................................................................................................................................................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................ATCGGGGGGAGCCTTCCT............................................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................................CAGCACTTTGGGAAGCCGAGG..................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................GGCAGGTGGATCACTTGAGG................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................TAGGAGTTCC........ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGACGTAGTCTTGGAAGGCCCCGTACTCCTCGGTCCCCGTTCCGTCCACGACCCTCTCCGTCGAAAAGAGTCTACACGGACTGAAAGATGGGTGTTTTGGACGGGTCCTCACCCCCCTCGGAAGGAGTCCCGAGACCGTCGGAGAGGAGTGTCCTGTACCGGAACGAAATCCACTCCCAGACGGATCTCGGAACCTACTTCCAGAGGGTAGGCCGGGTCGAAGTCGCAGTGTGTCTCCGGAATTTTGTTTGTGCAATCCGGTCCGTACAACCGGGTGCGGACATTAGGGTCGTGAAACCCTTCGGCTCCGTCCACCTAGTGAACTCCAATCCTCAAGGTCTGGTCG
********************************************************************************************************************************************************************************((((..(((....)))..))))..........(((((....(((....))).))))).((((((((....))))))))(((((((..((((...))))...)))..))))...********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139207
spleen		 SRR139188
lung		 SRR139193
ovary		 SRR330907
skin		 SRR330916
skin		 SRR553572
frontal-cortex		 SRR330919
skin		 SRR330917
skin		 SRR330921
skin		 GSM450602
brain		 SRR039611
liver		 SRR342895
heart		 SRR342898
heart		 SRR444050
skin		 TAX577744
breast
....................................................................................................ACGGGTCCTCACCCC....................................................................................................................................................................................................................................... 15 0 20 1.10 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCCAGACGGATCTCG............................................................................................................................................................ 15 0 5 1.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GACTGAAAGATGGGTGT........................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GACGGGTCCTCACCCCCC..................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CCAGAGGGTAGGCCG................................................................................................................................... 15 0 2 1.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CCAGAGGGTAGG...................................................................................................................................... 12 0 20 0.40 8 0 0 0 0 0 0 4 3 0 0 0 1 0 0 0
...................................................CCCTCTCCGTCGAAAAG...................................................................................................................................................................................................................................................................................... 17 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCCAGAGGGTAGGCC.................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GTGCGGACATTAGGGTCGTGAAAC................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................ACACCCGGGGGCGGACATCAGGGTCGTGA................................................... 29 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....TATTCTTGGTAGTCCCCGTACT............................................................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................CCCTCGGAAGTAGTCCC....................................................................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGTCTGGTC. 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Generated: 04/21/2015 at 08:21 PM