ID:

clust_1729_GRHL2

 Coordinate:

chr8:101665328-101665569 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.7 -46.5 -46.5
mature
  1. chr1:147184313-147184328 -
  2. chr11:39752886-39752901 -
  3. chr11:59411889-59411904 -
  4. chr12:50049619-50049634 -
  5. chr15:43275180-43275195 +
  6. chr5:12477285-12477300 -
  7. chr5:113543603-113543618 +
  8. chr8:101665392-101665407 +
  9. chr8:118667816-118667831 +
  10. chrX:57302975-57302990 -
  11. chrY:17175407-17175422 -
star

Sense Strand Reads

TAGGGGCCACAGGAGCTAGTGGAAGTGCCAGGAGAGGGTATCTGTTGACTCAGCTTCTGGGGTATTTTCCTACAAAAGGCAGAAGATGAGTCAACTCTTCTCCGGATCACTTTCATAAAGGAAATTGGATTATCTGGGAAGCTCAGGCTTTCTGAGTGATGAGTCCTGTTGGTTGATTGGAGGATCTGACAGGAAACCCTTTCCACCTGAGCTCTTGTTGGAAGATTCACTAAAATGCACGTTATACTTCTTGCCGAGGTCAATGTAGTAGGCTGGGTGTATTACTGACAGTGAGATTTCAGTCGTGTCTCACAGTCTTATTGCCGAGCAGAAATCCTCAGT
***************************************************************************************************(((((.((((...(((...((((......(((((.((((((((....)))))))).)))))...))))..))).)))))))))..((((((((((....(((.......))).)))))))))).....((((....((((((((..(((((.....))))).))))).))).....)))).........****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139170
heart		 RoviraIPAgo2
breast		 SRR139195
ovary		 SRR139219
thymus		 SRR139218
thymus		 GSM450602
brain		 SRR139176
kidney		 SRR139186
lung		 SRR139193
ovary		 SRR139197
ovary		 SRR139198
placenta		 SRR139199
placenta		 SRR139207
spleen		 SRR191594
breast		 SRR191630
breast		 SRR330907
skin		 SRR330910
skin		 SRR342894
heart		 SRR094131
uterus		 TAX577739
breast		 SRR037876
fibroblast		 TAX577742
breast		 SRR095854
brain		 SRR342901
heart		 TAX577738
breast
..................................................................................................................ATAAAGGAAATTGGAT.................................................................................................................................................................................................................... 16 0 11 4.00 44 0 0 11 22 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GTCAATGTAGTAGGC..................................................................... 15 0 1 3.00 3 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAGGAAATTGGATT................................................................................................................................................................................................................... 15 0 20 2.35 47 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAGGAAATTGGAT.................................................................................................................................................................................................................... 15 0 20 1.25 25 0 0 0 0 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GTATCTGTTGACTCAGCT............................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................GATTTCAGTCGTGTC................................. 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGGTTGATTGGAGGA.............................................................................................................................................................. 15 0 9 1.00 9 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTGAGTGATGAGTCCTGTTGGT......................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTGAGTGATGAGTCCTGTTGGTTGATTGGAGG............................................................................................................................................................... 32 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTGAGTGATGAGTCCTGTTG........................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCAATGTAGTAGGCT.................................................................... 15 0 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTGAGTGATGAGTCCTGTT............................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TAATGTAGTAGGCTGGGCGTAT............................................................ 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GGGTATCTGTTGACTCAGCTTCTGGGG........................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GGGTATCTGTTGACTCAGCTTCTGGG......................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAGAAGCTAGTGGAAGTCCCA........................................................................................................................................................................................................................................................................................................................ 21 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................ATGTAGTAGGCTGGGTGGTT............................................................ 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................CGAGGTAGTAGGCTGGGTGTTT............................................................ 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................TGACTCAGCTTCTGG.......................................................................................................................................................................................................................................................................................... 15 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AAATGCGCGGTATACTTC............................................................................................ 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGGGTGTATTACTG....................................................... 14 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TAATGTAGTTGGCTGGGTGTTT............................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TGGAGGATCTGAC........................................................................................................................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................AATTGCACGGTATTCTTCTTG......................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............CTAGTGGAAGTG........................................................................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

ATCCCCGGTGTCCTCGATCACCTTCACGGTCCTCTCCCATAGACAACTGAGTCGAAGACCCCATAAAAGGATGTTTTCCGTCTTCTACTCAGTTGAGAAGAGGCCTAGTGAAAGTATTTCCTTTAACCTAATAGACCCTTCGAGTCCGAAAGACTCACTACTCAGGACAACCAACTAACCTCCTAGACTGTCCTTTGGGAAAGGTGGACTCGAGAACAACCTTCTAAGTGATTTTACGTGCAATATGAAGAACGGCTCCAGTTACATCATCCGACCCACATAATGACTGTCACTCTAAAGTCAGCACAGAGTGTCAGAATAACGGCTCGTCTTTAGGAGTCA
******************************************************(((((.((((...(((...((((......(((((.((((((((....)))))))).)))))...))))..))).)))))))))..((((((((((....(((.......))).)))))))))).....((((....((((((((..(((((.....))))).))))).))).....)))).........*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139188
lung		 SRR139206
spleen		 RoviraIPAgo2
breast		 SRR139172
kidney		 SRR139173
kidney		 SRR139200
placenta		 SRR139210
testes		 TAX577739
breast		 SRR191569
breast		 SRR191629
breast		 SRR342894
heart		 SRR330917
skin		 SRR330905
skin		 SRR330904
skin		 TAX577740
breast		 SRR330919
skin		 SRR330923
skin		 SRR039614
liver		 SRR039620
liver		 SRR330907
skin		 SRR330911
skin		 SRR342899
heart		 SRR553574
heart
......GGTGTCCTCGATCACC................................................................................................................................................................................................................................................................................................................................ 16 0 3 2.00 6 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAGGTGGACTCGAGA............................................................................................................................... 15 0 20 1.10 22 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TGACTGTCACTCTAAAG.......................................... 17 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GTCTTCTACTCAGTT........................................................................................................................................................................................................................................................ 15 0 12 1.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CAACTGAGTCGAAGAC........................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GAAGAGGCCTAGTGAA...................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TCCAGTTACATCATC....................................................................... 15 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GTGTCAGACTAACGGCT............... 17 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGAAAAGGTGGACTCGAGAA.............................................................................................................................. 20 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GGCCTAGTGAAA..................................................................................................................................................................................................................................... 12 0 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AAAGGTGGACTCGAGAAGAA........................................................................................................................... 20 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGTGTCAGAATAACG.................. 15 0 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................ATGAAGAACGGCT..................................................................................... 13 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AAAGGTGGACTCGAGAAGA............................................................................................................................ 19 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AATAACGGCACGTCTTCAGAAGT.. 23 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GGTGTCAGAATGACGGCTC.............. 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TGTCAGAATGACGGCTCGG............ 19 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................GGAAAAGGTGGACTCGAGAAGA............................................................................................................................ 22 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................ATGAAGAACGGC...................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................AGAGGCCTAGTG........................................................................................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGGAAAAGGTGGACTCGAGAAGA............................................................................................................................ 23 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GGTGTCAGAATGACGGCTCGG............ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................CAGCAAAGAGTGTCAGAGT...................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................................................................ACGGCGCGTCTTTAG...... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Generated: 04/21/2015 at 09:11 PM