ID:

clust_166_AP3M1

 Coordinate:

chr10:74128609-74128830 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-63.0 -62.5 -62.5

Sense Strand Reads

GCCAAGAACAAGCAAACCATACATAACCTGGGCAAAAATTGTGGTACCGGTCCTTTGCAAGGTTATGCATGGTCAAATTATGGCACTGGTTCTTTGCTCAGGTTATGCATGGTCCATTTTGCTCTGCTTCTGAAAGCTGAGTACTTTGCAAGCAGAGCAAAACGGACCATGCATAACCTGGGCAAAACCATGAACCATTGCCATAATCTTACCATAGTCTGTAGAGTTTGTGGCCAACAAGGAGACAGACCTACCTGTAGTTCGTGAGGACATTCCCCAATTTACCTGCTTCAAGTACGTCTTCTCTGCGTTGAGTTTTTAA
********************************************************************************************(((((((((((((((((((((((.(((((((((((((...((((.......))))..))))))))))))).)))))))))))))))))))))))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039190
blood		 SRR039625
liver		 SRR094132
uterus		 SRR139202
spleen		 TAX577739
breast		 SRR139186
lung		 SRR139219
thymus		 GSM450608
brain		 SRR039612
liver		 SRR040028
cervix		 SRR094131
uterus		 SRR139164
heart		 SRR139184
lung		 SRR139196
ovary		 SRR139203
spleen		 SRR139204
spleen		 SRR139211
testes		 SRR191571
breast		 SRR191603
breast		 SRR330919
skin		 SRR342897
heart		 SRR342898
heart		 SRR363676
fibroblast		 TAX577740
breast		 SRR039617
liver		 SRR191463
breast		 SRR094129
uterus		 GSM450610
brain		 SRR191548
breast		 SRR553575
Kidney		 TAX577590
breast
......................................................................................................................................................AGCAGAGCAAAACGGACCATG....................................................................................................................................................... 21 0 1 7.00 7 2 2 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CATGGTCCATTTTGCTCTGCT.................................................................................................................................................................................................. 21 0 1 4.00 4 0 0 0 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GCAGAGCAAAACGGACCATGCA..................................................................................................................................................... 22 0 1 3.00 3 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGCATGGTCCATTTTGCT....................................................................................................................................................................................................... 18 0 1 3.00 3 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GCAGAGCAAAACGGACCATG....................................................................................................................................................... 20 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGCATGGTCCATTTTGCTCTGC................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TTCGTGAGGACATTCCCC............................................ 18 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGAGCAAAACGGACCATGCATA................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCAGAGCAAAACGGACCATGC...................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GCAGAGCAAAACGGACCAT........................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CCCAATTTACCTGCT................................ 15 0 3 2.00 6 0 0 0 0 0 0 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CATGGTCCATTTTGCTCTGCTT................................................................................................................................................................................................. 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GCAGAGCAAAACGGACCATGCAA.................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................CATGGTCCATTTTGCTCTGCTTT................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCAGAGCAAAACGGACCATA....................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATGGTCCATTTTGCTCTGCTT................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATGGTCCATTTTGCTCTGCTTC................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGAGCAAAACGGACCATGCAT.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CATGGTCCATTTTGCTCTGCTAA................................................................................................................................................................................................ 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................AAATTGTGGTACCGGT............................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CAGAGCAAAACGGACCATGCATT................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATGGTCCATTTTGCTCTGCTTA................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATGCATAGTCCATTTTGCTCTGT................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................TACATAACCTGGGCA................................................................................................................................................................................................................................................................................................ 15 0 5 1.00 5 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATAGTCCATTTTGCTCTGCTTC................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGCCTGGTCCATTTTGCTCT..................................................................................................................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TGTGCAAATCCATGTACCATTGC......................................................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TACCGTAGTCTGCACAGTTTGT........................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................AGTCGGTAGAGCTTGTGGC........................................................................................ 19 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................AGTCGGTAGAGTATGTGGCG....................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................AATTGTAGTACCGGT............................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................TGTGCAAATCCATGCACCATT........................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................TGGGCAAATCCATGCACCACTG.......................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CGGTTCTTGTTCGTTTGGTATGTATTGGACCCGTTTTTAACACCATGGCCAGGAAACGTTCCAATACGTACCAGTTTAATACCGTGACCAAGAAACGAGTCCAATACGTACCAGGTAAAACGAGACGAAGACTTTCGACTCATGAAACGTTCGTCTCGTTTTGCCTGGTACGTATTGGACCCGTTTTGGTACTTGGTAACGGTATTAGAATGGTATCAGACATCTCAAACACCGGTTGTTCCTCTGTCTGGATGGACATCAAGCACTCCTGTAAGGGGTTAAATGGACGAAGTTCATGCAGAAGAGACGCAACTCAAAAATT
****************************************************************************************************************************************(((((((((((((((((((((((.(((((((((((((...((((.......))))..))))))))))))).)))))))))))))))))))))))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139197
ovary		 SRR139210
testes		 SRR139170
heart		 SRR139175
kidney		 SRR139189
lung		 SRR139195
ovary		 SRR139203
spleen		 SRR139208
testes		 SRR139218
thymus		 GSM450602
brain		 SRR342894
heart		 SRR342901
heart		 TAX577744
breast		 SRR342899
heart		 GSM450600
brain		 GSM450601
brain		 SRR330921
skin		 SRR342896
heart		 TAX577741
breast		 GSM532879
cervix		 SRR039614
liver		 SRR039618
liver		 SRR191452
breast		 SRR330912
skin		 SRR342898
heart		 SRR342900
heart		 TAX577738
breast
..............................................................................................................CCAGGTAAAACGAGAC.................................................................................................................................................................................................... 16 0 3 7.00 21 6 3 0 3 3 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CGAGTCCAATACGTAC................................................................................................................................................................................................................... 16 0 2 2.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAAGAAACGAGTCCAA.......................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACGTACCAGGTAAAAC......................................................................................................................................................................................................... 17 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................AGTTCATGCAGAAGAG................ 16 0 3 1.00 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACTTTCGACTCATGAA................................................................................................................................................................................ 16 0 4 1.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GCAGCAGAGGCGCAAGTCAA..... 20 3 19 0.26 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CGAAGTTCATGCAGAGGA................. 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GCGGTTAAATGCACGAAGAT............................ 20 3 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 1
.............................................................................................................................................................................................................................GTCTCAAACCCCGGTTGTTCC................................................................................ 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GTTCATGCAGAA................... 12 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................................................................GCAGACGAGACGCAACGC....... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GTCTCATTTTGCCTGG.......................................................................................................................................................... 16 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GAAACGAGTCC............................................................................................................................................................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................AGGAAACGTTC..................................................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGACCAAGAAACGA................................................................................................................................................................................................................................ 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACATCTAGCACTCCCGTA................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AAGAGACGCAAGTCAA..... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................GTTCAAGCAGAAGAGTCGCGA.......... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Generated: 04/21/2015 at 06:07 PM