ID:

clust_1618_ITGB4

 Coordinate:

chr17:75756261-75756498 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.4 -31.3 -31.2

Sense Strand Reads

GATGTTGCCTAAACATGAGTGGGATTACAGGCTCCACTCTTGTATAGTACACAATCTGAACAACCAGCCATACCATACTGTACCCAACCTGTACCCAAACCACAGCTAGTCCTGGGTGGGTGATAACTAGGTCTCGATGGCAGCTTAGGGACGAGGAGGATCAGGCCAGGGGTGGGAGTAACACTGCACTACTGTGTGCCCCCACCTGATCCCCCCAGGTGAGCTGCATCGGCTCAACATCCCCAACCCTGCCCAGACCTCGGTGGTGGTGGAAGACCTCCTGCCCAACCACTCCTACGTGTTCCGCGTGCGGGCCCAGAGCCAGGAAGGCTGGGGCC
****************************************************************************************************************************************......(((((.((....((.((((((((...(((((............((((....)))))))))..))))))))))))...)))))****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR095854
brain		 SRR139204
spleen		 SRR553572
frontal-cortex		 SRR139194
ovary		 SRR139202
spleen		 SRR330905
skin		 SRR342894
heart		 RoviraIPAgo2
breast		 SRR139165
heart		 SRR139187
lung		 SRR139193
ovary		 SRR139199
placenta		 SRR139200
placenta		 SRR139201
placenta		 SRR139205
spleen		 SRR139214
thymus		 SRR191564
breast		 SRR191592
breast		 SRR191593
breast		 SRR191600
breast		 SRR330906
skin		 SRR330912
skin		 SRR330915
skin		 SRR342898
heart		 TAX577589
breast		 TAX577744
breast		 GSM450601
brain		 TAX577579
breast		 TAX577746
breast		 SRR342895
heart		 SRR342899
heart		 SRR342900
heart		 TAX577741
breast		 SRR330908
skin		 TAX577590
breast		 SRR039623
liver		 GSM450605
brain		 SRR015448
breast		 SRR191421
breast		 SRR330923
skin
.............................................................................................................................................................................................TACTGTGTGCCCCCACCTGA................................................................................................................................. 20 0 1 7.00 7 0 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGAGGAGGATCAGGCCAGGGGTGG................................................................................................................................................................... 24 0 1 3.00 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACTGTGTGCCCCCACCTGAT................................................................................................................................ 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACTGTGTGCCCCCACCTGATCCCCCCAGT....................................................................................................................... 30 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................CGCCCAGACCTCGGTGGTGGTGGAAGACCTCCTGCCCA................................................... 38 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CTCGATGGCAGCTTA............................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................CTCGGTGGTGGTGGAAGACCTCCTGC...................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GCCCAGAGCCAGGAAGGCTGG.... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TCCCCAACCACTCCTACGTGT.................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AGGATCAGGCCAGGGGTGGGAGT............................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CGTCTCGATGGCAGCTTAGGG............................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GCCCAGACCTCGGTGGTGGTGGAAGACC............................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACGAGGAGGATCAGGCCAGGG....................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GAGCTGCATCGGCTCA...................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAACTAGGTCTCG.......................................................................................................................................................................................................... 14 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACTGTGTGCCCCCACCTGATC............................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACTGTGTGCCCCCACCTGATCC.............................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCCCCCACCTGATCCCCCCAG........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................AGACCTCGGTGGTGGTGGAAGA.............................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCGATGGCAGCTTAG.............................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CGATGGCAGCTTAGGGACGAGGAGGA.................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................CTACGTGTTCCGCGTGCGGGCCC..................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................CTGTTCCGCGTGCGGGCCCAGAGCCAGGAAGGCT...... 34 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ACGTGTTCCGCGTGCGGGCC...................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CATACCATACTGTACCCAACCTGT...................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CTCCTGCCCAACCACTCCTACGTGTTCCGCGTGCGG......................... 36 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CGGTGGTGGT.................................................................... 10 0 20 0.70 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCGGTGGTGGTGGGAGACC............................................................ 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACTGGGTGCCCCCACCTGA................................................................................................................................. 20 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CCGTGCGGGCCCAGAGC................ 17 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................GAGCCAGGAAGGCTGGGG.. 18 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................CGCGTGCGGG........................ 10 0 20 0.10 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................TACTGTGTGCCTTCACCTGA................................................................................................................................. 20 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GTGTTCCGCGTGC........................... 13 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CCCGCCCTGACCTCGGTCGTG...................................................................... 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................TGGGATTACAGGCTACACT............................................................................................................................................................................................................................................................................................................ 19 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................GACGAGGAGGATC................................................................................................................................................................................ 13 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CGGTGGTGGTGG.................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTGGAAGACCTC.......................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................GATAACTAGGT.............................................................................................................................................................................................................. 11 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CTGAACAACCAGCCAGA.......................................................................................................................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................GATAACTAGGTGTCG.......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GTTCCGCGTTCGGGCCCCGG.................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................GCGGGCCCAGAGCC............... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCGGTGGTGGGGGAAGA.............................................................. 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................TGGAAGACCTC.......................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................CCGCGTGCGGG........................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTACAACGGATTTGTACTCACCCTAATGTCCGAGGTGAGAACATATCATGTGTTAGACTTGTTGGTCGGTATGGTATGACATGGGTTGGACATGGGTTTGGTGTCGATCAGGACCCACCCACTATTGATCCAGAGCTACCGTCGAATCCCTGCTCCTCCTAGTCCGGTCCCCACCCTCATTGTGACGTGATGACACACGGGGGTGGACTAGGGGGGTCCACTCGACGTAGCCGAGTTGTAGGGGTTGGGACGGGTCTGGAGCCACCACCACCTTCTGGAGGACGGGTTGGTGAGGATGCACAAGGCGCACGCCCGGGTCTCGGTCCTTCCGACCCCGG
******************************************************************************************************************......(((((.((....((.((((((((...(((((............((((....)))))))))..))))))))))))...)))))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139202
spleen		 SRR139164
heart		 SRR139179
liver		 SRR139183
lung		 SRR139195
ovary		 SRR139200
placenta		 SRR139201
placenta		 SRR139204
spleen		 SRR139207
spleen		 TAX577745
breast		 SRR037876
fibroblast		 GSM450598
brain		 GSM450609
brain		 SRR342894
heart		 SRR330921
skin		 SRR553572
frontal-cortex		 GSM450601
brain		 TAX577742
breast		 SRR039616
liver		 SRR330908
skin		 SRR330919
skin		 SRR342898
heart		 SRR342899
heart
.....................CCTAATGTCCGAGGTG............................................................................................................................................................................................................................................................................................................. 16 0 9 6.00 54 27 9 0 0 0 0 0 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGTGTTAGACTTGTTGGT................................................................................................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCACTCGACGTAGC........................................................................................................... 15 0 2 2.00 4 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CGGGTTGGTGAGGAT......................................... 15 0 4 1.00 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CTTGTTGGGCGGTATGCT....................................................................................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGTCCGAGGTGA............................................................................................................................................................................................................................................................................................................ 12 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................CGGGTTGGTGAGGAGGC....................................... 17 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................TTGCTATGGTATGACATGGGAT........................................................................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................CTTGTTGGGCGGTATGTT....................................................................................................................................................................................................................................................................... 18 2 17 0.12 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................ATGCACAAGGCG............................... 12 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................GGTTTGGTGTCGATC..................................................................................................................................................................................................................................... 15 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AGTTGGAGGGGTTGCGACGG..................................................................................... 20 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................CGTGATGACACTTGGGGGCGG.................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................GTATCATGTGTTAGCCTTG..................................................................................................................................................................................................................................................................................... 19 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................TTGACTTGTTGGACGGTAGGGT....................................................................................................................................................................................................................................................................... 22 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GGTCGGTATGGT....................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................CCAGAGCTACCG..................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................GGTCTGGAGCC........................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Generated: 04/21/2015 at 07:20 PM