ID:

clust_153_IPPK

 Coordinate:

chr9:92639850-92640070 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.9

Sense Strand Reads

GTGACACCTGGGGACAGAGTCCTGGGCTCCCTGCAGGAGCTGACAGCCATCGCAGGTGGATACTTCAGAGGAGGCAGGGCTGTTGAGTATGGGCCTCTCAGCTTCCTATGTGCCGTGGTCTGGACGAGGTGACTGGTGAACTGGAAGCCCTGGCCCCTCTCCTCGCTGCTGCACATGGCTGGCGTCCTGCTGCCCGGCTGGCTGCCTCTCAGCAGTGGGCAGATGGCGCCTGCTCTTGACCTGCCTCCCCAGGTCTTGGTTAGAAACCCATGGCGCTGGCTGCTGGGCAGTGAATTGGCTTCATTCCCTGTCTGCCTCTAC
**************************************************************************************************..(((..((((((((.(((((..(((.((((.....(((.....((....))..))))))))))..))))).))))))))..)))....************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553572
frontal-cortex		 SRR191590
breast		 SRR330908
skin		 SRR095854
brain		 SRR139176
kidney		 SRR139179
liver		 SRR139188
lung		 SRR139190
lung		 SRR191562
breast		 SRR330906
skin		 SRR330907
skin		 SRR330915
skin		 SRR330922
skin		 SRR330923
skin		 SRR342897
heart		 SRR342898
heart		 TAX577740
breast		 SRR039620
liver		 RoviraIPAgo2
breast		 GSM450601
brain		 TAX577745
breast		 GSM450602
brain		 SRR037876
fibroblast		 SRR330919
skin		 GSM450609
brain		 GSM450607
brain		 TAX577453
breast		 SRR040014
cervix		 SRR039618
liver		 SRR330904
skin		 SRR330905
skin		 SRR330920
skin		 TAX577742
breast
......................................................................................................................................................TGGCCCCTCTCCTCGCTGCTGC..................................................................................................................................................... 22 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGGCCCCTCTCCTCGCTGCTGCAT................................................................................................................................................... 24 1 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGGCCCCTCTCCTCGCTGCT....................................................................................................................................................... 20 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGGCCCCTCTCCTCGCTGCTG...................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CCCTGTCTGCCTCTA. 15 0 16 1.00 16 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CGTGGTCTGGACGAGGTGACTGGT........................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AGGAGGCAGGGCTGTTGA........................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CCGTGGTCTGGACGAGGTGACTGGTGAACTGG................................................................................................................................................................................. 32 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CCCCAGGTCTTGGTTAGAAACCCATGGCGC............................................. 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CAGAGGAGGCAGGGCTGTTGAGTATG...................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGGCCCCTCTCCTCGCTGATG...................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCAGCAGTGGGCAGA.................................................................................................. 16 0 6 1.00 6 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GACGAGGTGACTGGT........................................................................................................................................................................................ 15 0 4 1.00 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGCTCTTGACCTGCCTCCCCA...................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCGTCCTGCTGCCCGGCT.......................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACTTGGCTGGCGTCCTTCTGC................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................CAAGGCGCTGGCTGCTGGG.................................. 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGGCCCCTCTCCTCGCTGA........................................................................................................................................................ 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCAGATGGCGCCTGCTGTTT................................................................................... 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTGACTGGTGAAGTGGTAGC............................................................................................................................................................................. 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCAGAGGAAGCAGGGCTGTTC............................................................................................................................................................................................................................................ 21 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................TGAGAGGAAGCAGGGCTGTT............................................................................................................................................................................................................................................. 20 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGCCTGCTCCTGACCTACCT........................................................................... 20 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGCTCATGGCTGGCGTC....................................................................................................................................... 17 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................GTGGTCTGGACGA.................................................................................................................................................................................................. 13 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGCCCGGCTGGCTGC.................................................................................................................... 15 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCAGAGGAAGCACGGCTGTT............................................................................................................................................................................................................................................. 20 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCAGCGGAGGCACGGCTGT.............................................................................................................................................................................................................................................. 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CTGGGCAGTGAATTGTCTACCT................. 22 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................CCTGCAGGAG.......................................................................................................................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................TGGTCTGGACGAG................................................................................................................................................................................................. 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGACTGGTGAACTCGCAG.............................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................TCTGGACGAGGT............................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................GGCTCGCGGCCTCTCAGC............................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................CAGTGGGCAGATG................................................................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CACTGTGGACCCCTGTCTCAGGACCCGAGGGACGTCCTCGACTGTCGGTAGCGTCCACCTATGAAGTCTCCTCCGTCCCGACAACTCATACCCGGAGAGTCGAAGGATACACGGCACCAGACCTGCTCCACTGACCACTTGACCTTCGGGACCGGGGAGAGGAGCGACGACGTGTACCGACCGCAGGACGACGGGCCGACCGACGGAGAGTCGTCACCCGTCTACCGCGGACGAGAACTGGACGGAGGGGTCCAGAACCAATCTTTGGGTACCGCGACCGACGACCCGTCACTTAACCGAAGTAAGGGACAGACGGAGATG
**************************************************************************************************************************************..(((..((((((((.(((((..(((.((((.....(((.....((....))..))))))))))..))))).))))))))..)))....************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total TAX577739
breast		 SRR139171
kidney		 SRR139194
ovary		 SRR139208
testes		 SRR040018
cervix		 SRR342900
heart		 TAX577740
breast		 TAX577745
breast		 TAX577744
breast		 TAX577580
breast		 SRR040012
cervix		 SRR342894
heart		 SRR342897
heart		 SRR037876
fibroblast		 RoviraIPAgo2
breast		 SRR330905
skin		 SRR342898
heart		 SRR342899
heart		 SRR342901
heart
.......................................................................................................................................................................................................................................................................ATTGGGTAACGCGTCCGACGACC................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTGCTCCACTGACCA........................................................................................................................................................................................ 15 0 4 1.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACTGACCACTTGACCTT............................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GACCTGCTCCACTGA........................................................................................................................................................................................... 15 0 6 1.00 6 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TCTTTAGGTACCGCGACCGTC....................................... 21 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CCGGGGAGAG................................................................................................................................................................ 10 0 20 0.25 5 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TACACCGCACCAGACCCGCTCT................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTCGGTAGCGTCCTGCTAGG.................................................................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TTGGCTAACGCGTCCGACGACC................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................TAGCGTGCACTTATGAGGTCT............................................................................................................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............GTCTCAAGTCCCGAGGGACGT.............................................................................................................................................................................................................................................................................................. 21 2 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
...............................................................AAGTCACCTGCGTCCTGACAAC............................................................................................................................................................................................................................................ 22 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................GAATCCTCCTCCGTCCCCACAAC............................................................................................................................................................................................................................................ 23 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................TATGGGTAACGCGTCCGACGAC.................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................ACGGCACCAGGCCAGCT.................................................................................................................................................................................................. 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGAGGAGCGA.......................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................AGAGGAGCGAC......................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................TTGGGTACCACAACCGACGACA................................... 22 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTCGGGGCCGGGCAGAGG............................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................AGGAGCGACGACG..................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................ACCACTTGACCTT............................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................TTGGGTACCACGACTGAAGACC................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Generated: 04/21/2015 at 09:02 PM