ID:

clust_1501_MRPS15

 Coordinate:

chr1:36461417-36461650 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.4 -26.9 -26.7 -26.5
mature
star
  1. chr1:36461427-36461443 -
  2. chr6:26043371-26043387 -

Sense Strand Reads

CTGACTGACACCAAAGCCAGAGGCCCTCTGCTCAGCTCCTATGCAGTGTGGTGGGAGCTGGTCAGTCCCTCCCACTGTGCAATTTAACTTGAAATGTCTCAAAACAGATTGAACCATGTTGTAGCTAAAATGGAAATCCTCTCCTTGCCCTCCCTGTGATGAGACCGGAACAGTCGAGCTGACAGCCCCAGTTTCTGTAGTTTCAGCCCAGCAAGCCAGATCCACACTGACTTTTAATCCCTGGGAAATGGCTCCCCACCTCCAGGGAGATTCATTTGCTACAGAAGGAATTTTTCAATCATCTTTGCTTTTCAAACTAAAATGAAACCAGCAT
************************************************************************************************************************************************************************************************(((((............((((((...((((...............((((((((...(((....)))..))))))))))))..)))))).)))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR191607
breast		 RoviraIPAgo2
breast		 SRR139216
thymus		 SRR342895
heart		 TAX577743
breast		 SRR037876
fibroblast		 SRR330908
skin		 GSM450606
brain		 SRR342894
heart		 SRR342901
heart		 TAX577589
breast
...........................................................................................................................................................................................................................................................................................................................ACTAAAATGAAACCAGCA. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CCAGCAAGCCAGATCCACAC........................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................ACCTCCAGGGAGATTCA............................................................ 17 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................CCCTGTGATGAGACCGGAACAGTCGAGCTGACA...................................................................................................................................................... 33 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AACTAAAATGAAACCAG... 17 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................ACTAAAATGAAACCAGC.. 17 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GATCAGACCGGACGAGTCGA............................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.....................AGCCCTCTGGTCCGCTCCTATG................................................................................................................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AACTAAAATGAAACCAGAA. 19 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACTTTTAATCCGTGGG......................................................................................... 16 1 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.....TGACACCAAAGCCAGA......................................................................................................................................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................ACCCCCTGTGATGACACCGGA..................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................CCACCCACTGCGAAATTTAACT..................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................CAGGGAGATT.............................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GACTGACTGTGGTTTCGGTCTCCGGGAGACGAGTCGAGGATACGTCACACCACCCTCGACCAGTCAGGGAGGGTGACACGTTAAATTGAACTTTACAGAGTTTTGTCTAACTTGGTACAACATCGATTTTACCTTTAGGAGAGGAACGGGAGGGACACTACTCTGGCCTTGTCAGCTCGACTGTCGGGGTCAAAGACATCAAAGTCGGGTCGTTCGGTCTAGGTGTGACTGAAAATTAGGGACCCTTTACCGAGGGGTGGAGGTCCCTCTAAGTAAACGATGTCTTCCTTAAAAAGTTAGTAGAAACGAAAAGTTTGATTTTACTTTGGTCGTA
*********************************************(((((............((((((...((((...............((((((((...(((....)))..))))))))))))..)))))).)))))...************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR139171
kidney		 SRR139180
liver		 SRR139207
spleen		 TAX577580
breast		 SRR039620
liver		 GSM450602
brain		 TAX577589
breast		 SRR040010
cervix		 SRR330912
skin		 SRR342898
heart		 SRR342899
heart		 SRR342900
heart
.................................................................................................................................................................................................................................................................TGGAGGTCCCTCTAA.............................................................. 15 0 8 1.00 8 0 8 0 0 0 0 0 0 0 0 0 0
GACTGACTGTGGTTTCG............................................................................................................................................................................................................................................................................................................................. 17 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..CTGACTGTGGTTTCG............................................................................................................................................................................................................................................................................................................................. 15 0 8 1.00 8 0 0 8 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTAGGTGTGACTGAATATGGGGG............................................................................................. 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GGTCAAAGACATCAAGGTCG............................................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................GAGACTTTACTGAGGGGTGGAGGTC..................................................................... 25 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................CTTCGATTTTAGCCTTAGGAGA................................................................................................................................................................................................ 22 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................GAGACTTTACGGAGGGGTGGAGGTC..................................................................... 25 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGGGTCGTTCGGTTTAGGTGT............................................................................................................ 21 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................GGTGACACGTTAAA......................................................................................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................AGTCGAGGATA.................................................................................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................CCAGTCAGGGA........................................................................................................................................................................................................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................TTGTCAGCTC............................................................................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 06:33 PM