ID:

clust_1491_FBXW11

 Coordinate:

chr5:171893243-171893475 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GACCTCTTTTTAAAAAGTCGCTTATCCGGACAGATCTGTTGTCTACTTTGATAGAGGTAGCAGAGATGGTTGGGTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTGAAGTGTGCTTTTGTATGTCTAATATTTTACCAAGTCACTAGAGATGATGACCCAGGCTAGGAAGTTCTGATTTGGTGGCAGATGGACAAATGAGTATTTCCCCTCTCCTGGCATCTCCATGGCACCTCCTTGTATCTCCTGAGCATTGGAAATATACCATCCTGCCCTCAGGATGTGTATGGGAGCTCCTTGAGGGAAGATACCGTATTTCCAGGACTCTTG
***************************************************************************************************************************************................((((((.....(((((...((((((.((.(((((............))))).)).)))))).....))))))))))).******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR330912
skin		 SRR330919
skin		 SRR330914
skin		 SRR330915
skin		 SRR363674
fibroblast		 SRR553576
testes		 SRR039622
liver		 SRR139187
lung		 SRR139199
placenta		 SRR139200
placenta		 SRR139203
spleen		 SRR330905
skin		 SRR330910
skin		 SRR330911
skin		 SRR330917
skin		 SRR330920
skin		 SRR553574
heart		 SRR553575
Kidney		 TAX577589
breast		 TAX577743
breast		 SRR040042
cervix		 SRR553573
cerebellum		 TAX577580
breast		 GSM450608
brain		 GSM450600
brain		 TAX577739
breast
......................................................................................................................................................AGAGATGATGACCCAGGCTAGGAAGTTCTGATT...................................................................................................................................................... 33 0 1 18.00 18 3 3 2 2 0 2 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................GATGACCCAGGCTAGGAAGTTCTGATT...................................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GATGATGACCCAGGCTAGGAAGTTCTGATT...................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGGCAGATGGACAAATGAG................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGAGATGATGACCCAGGCTAG.................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATGGACAAATGAGTATTTCCCC....................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TTTGATAGAGGTAGCAGAG............................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGAGATGATGACCCAGGCTAGGAAGTTCTGAT....................................................................................................................................................... 33 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCTCCTGGCATCTCCA....................................................................................................... 16 0 4 1.00 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGACGTGTGCTTTTGTCTGTCT.......................................................................................................................................................................................................... 22 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................GGTAGCAGAGATGGT....................................................................................................................................................................................................................................................................... 15 0 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................TGCTTTCGTCTGTCTAATAT..................................................................................................................................................................................................... 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................TGCGGTTGTATGTCTAATA...................................................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................TCGGATTTGGCGGCAGATGGC........................................................................................................................................ 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................TGGGTTAGTATTTTTTTTTTTT................................................................................................................................................................................................................................................. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................AGAGGTAGCAGAGTTGATCGG.................................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CTGGAGAAAAATTTTTCAGCGAATAGGCCTGTCTAGACAACAGATGAAACTATCTCCATCGTCTCTACCAACCCAATCAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAACTTCACACGAAAACATACAGATTATAAAATGGTTCAGTGATCTCTACTACTGGGTCCGATCCTTCAAGACTAAACCACCGTCTACCTGTTTACTCATAAAGGGGAGAGGACCGTAGAGGTACCGTGGAGGAACATAGAGGACTCGTAACCTTTATATGGTAGGACGGGAGTCCTACACATACCCTCGAGGAACTCCCTTCTATGGCATAAAGGTCCTGAGAAC
********************************************************************************************************................((((((.....(((((...((((((.((.(((((............))))).)).)))))).....))))))))))).*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139164
heart		 SRR444060
skin		 SRR139201
placenta		 SRR139182
liver		 SRR139200
placenta		 SRR139214
thymus		 SRR139217
thymus		 TAX577739
breast		 SRR342897
heart		 SRR330904
skin		 SRR444061
skin		 SRR039625
liver		 SRR553576
testes		 SRR040036
cervix		 SRR330917
skin		 TAX577589
breast		 SRR040024
cervix		 TAX577743
breast		 SRR330916
skin		 GSM532929
cervix		 SRR330922
skin		 SRR342894
heart		 SRR342899
heart		 SRR342901
heart		 SRR363675
fibroblast		 SRR444048
skin		 TAX577741
breast		 TAX577744
breast
......................................................................................................................................................................CGATCCTTCAAGACTAA...................................................................................................................................................... 17 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GAAAACATACAGATTA....................................................................................................................................................................................................... 16 0 7 2.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGGAGAAAAATTTTTC............................................................................................................................................................................................................................................................................................................................ 16 0 20 1.05 21 0 0 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GGAGTCCTACACATA.......................................... 15 0 4 1.00 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGATCCTTCAAGACTA....................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AGGAACATAGAGGAC................................................................................. 15 0 10 1.00 10 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................CCCTTCTATGGCATA.............. 15 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ACCATCGTCTCTACCAA...................................................................................................................................................................................................................................................................... 17 1 20 0.25 5 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................GGGCTAGACAACAGATGAAA............................................................................................................................................................................................................................................................................................ 20 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCGTAGAGGTACCGTTGA............................................................................................... 18 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAAAAAAGACCAAAACTTC........................................................................................................................................................................................................................... 21 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACCGAAACTT............................................................................................................................................................................................................................ 32 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CTTGGCATAAAGGTCCTGA.... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGCTTGGCATAAAGGTCCTGA.... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................GCGAATAGGCC................................................................................................................................................................................................................................................................................................................ 11 0 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CGTGGCATAAAGGTCCTGA.... 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................CTCTACCAAGCCAATCAGA............................................................................................................................................................................................................................................................ 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCGACAACAGCTGAAACTA......................................................................................................................................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................AGCGAATAGGC................................................................................................................................................................................................................................................................................................................. 11 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CTGGGTCCGA.................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................ATAAAAAAAAAAAAAACCCAAAACGTCA.......................................................................................................................................................................................................................... 28 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACCAAA................................................................................................................................................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................AAGGCATAAAGGTGCTGA.... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................TTTGGCATAAAGGTCCTTA.... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................................GAGGAACTCC........................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TTCTATGGCATA.............. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................ACCACCGTCTACC......................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Generated: 04/21/2015 at 08:26 PM