ID:

clust_1374_NBEAL2

 Coordinate:

chr3:47008812-47009040 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.2 -54.2 -54.2

Sense Strand Reads

TGGGCACATATTTCAAGGTTTGTTACCTGTCCCTTCATCTTCCCATGGGGAGGTCTTGCCCTGGGCCTCCGCTTAGCCACAGTTGTGGGAGATTTCTTTGTGTATAAGAATTTCAATTTAACCATCCTTAAAATGAGGACAGAGAGGGTATATGGGATAAGGGATATCTGCTGGTCGCAAAGCCCCCTTGCAGTCGCAAGTTGGTGTATATCCCCTCTCCCTTCCAGACTGCTCCCGGCCGCGCCTCCCTTGCCCATGAAGGTGGCCATCCGCAGCGTGGCCGTGACCAAGGAGCGCAGCCACGTGCTGGTGGGCCTGGAGGATGGCAA
***************************************************************************************************************************************.((((((....((.....((((...(((((((.(((.....)))..(((..(((((....)))))..)))..)))))))...))))..))...))).)))(((((((((......((.((((....)))).))......)))))))))........************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139173
kidney		 TAX577738
breast		 SRR330919
skin		 SRR330906
skin		 SRR139215
thymus		 SRR139216
thymus		 SRR191460
breast		 SRR191478
breast		 SRR330916
skin		 SRR330917
skin		 SRR330922
skin		 SRR342896
heart		 SRR553572
frontal-cortex		 TAX577588
breast		 GSM450601
brain		 TAX577740
breast		 TAX577743
breast		 SRR037876
fibroblast		 GSM450602
brain		 TAX577741
breast		 SRR039614
liver		 SRR039618
liver		 SRR095854
brain		 SRR191516
breast		 SRR191620
breast		 SRR330909
skin		 SRR342894
heart
......................................................................................................................................................TATGGGATAAGGGATATCTGCTGG........................................................................................................................................................... 24 0 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TATGGGATAAGGGATATCTGC.............................................................................................................................................................. 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TATGGGATAAGGGAT.................................................................................................................................................................... 15 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TATGGGATAAGGGATATCTTCTT............................................................................................................................................................ 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GCCTCCCTTGCCCATGAAGGTGGCCATCCGCAGC..................................................... 34 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TATGGGATAAGGGATATCTGCT............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GGTGGCCATCCGCAGCGTGGCCGTGA........................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TATGGGATAAGGGTTATCTGTT............................................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CGCAGCGTGGCCGTGACCAAGG..................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CGTGACCAAGGAGCGCAGCCACG......................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGGGATAAGGGATATCTGCTGGTC......................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GGTGGGCCTGGAGGATGGCAA 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CGTGCTGGTGGGCCTGGAG........ 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CTGGTGGGCCTGGAGGA...... 17 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ATCCCGGCCGCGCCCCCCTT.............................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CTCCCGGCCGCGCCCCCC................................................................................ 18 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0
.........................................................................................................................................................................................................................................CCCGGCCGCGC..................................................................................... 11 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GGCAGCGTGGCCGTGAC.......................................... 17 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGACTTCTTCCGGCCGCGAC.................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGAGGACGCAGAGGGTATATG............................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACTGCTCCCGGCCGCCGCTC.................................................................................. 20 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GATTTCTTTGTGTATCACAAT.......................................................................................................................................................................................................................... 21 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTACTCCGGGCCGCGCCTCCA................................................................................ 21 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ATCCCGGCCGCGCCTCC................................................................................. 17 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TGAGGACGGAGATGGTATA................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AAAATGAGGAGAGAGGGTGTATA................................................................................................................................................................................. 23 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GACTGTTGTCGGCCGCGCC.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CCGGCCGCGC..................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................GAGGACAGAGAGGG..................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................CCCGGCCGCG...................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ACCCGTGTATAAAGTTCCAAACAATGGACAGGGAAGTAGAAGGGTACCCCTCCAGAACGGGACCCGGAGGCGAATCGGTGTCAACACCCTCTAAAGAAACACATATTCTTAAAGTTAAATTGGTAGGAATTTTACTCCTGTCTCTCCCATATACCCTATTCCCTATAGACGACCAGCGTTTCGGGGGAACGTCAGCGTTCAACCACATATAGGGGAGAGGGAAGGTCTGACGAGGGCCGGCGCGGAGGGAACGGGTACTTCCACCGGTAGGCGTCGCACCGGCACTGGTTCCTCGCGTCGGTGCACGACCACCCGGACCTCCTACCGTT
**************************************.((((((....((.....((((...(((((((.(((.....)))..(((..(((((....)))))..)))..)))))))...))))..))...))).)))(((((((((......((.((((....)))).))......)))))))))........*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139164
heart		 SRR039190
blood		 SRR139172
kidney		 SRR139179
liver		 SRR139190
lung		 TAX577740
breast		 TAX577743
breast		 SRR191553
breast		 GSM450602
brain		 SRR094130
uterus		 SRR095854
brain		 SRR330915
skin		 SRR037876
fibroblast		 RoviraIPAgo2
breast		 TAX577453
breast		 SRR553572
frontal-cortex		 SRR342895
heart		 TAX577590
breast
.......................................................AACGGGACCCGGAGG................................................................................................................................................................................................................................................................... 15 0 20 1.10 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TATAGACGACCAGC........................................................................................................................................................ 14 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGGTCTGACGAGGGCCGGCGC...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAGGGGAGAGGGAAGGT....................................................................................................... 18 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TGGTTCCTCGCGTCGG............................ 16 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GATGGTCTGACGAGGGGGGGCGC...................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CGCCGCGCGTCGGTGCACGACCA.................. 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GACGGTCTGACGAGGGGGGGCGC...................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGGTCTGACGAGGCGGGGCGC...................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAGGGGCGAGGGAAGGTCGGAC.................................................................................................. 22 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGGATGGTCTGACGAGAGCC........................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGTCTGACGAGGGGGGGCGC...................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................ATTGGTACGCATCTTACTCCTG............................................................................................................................................................................................. 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CGAGCACCCGGACCTCCT...... 18 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACGGGGGCCGGCGCGGA................................................................................... 17 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................AATGGCCAGAGACGTAGAAGGG............................................................................................................................................................................................................................................................................................. 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................ATAGGGGAGAGGGAA.......................................................................................................... 15 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................GGAGGCGAAT.............................................................................................................................................................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................TTGGTGCCTCGCGTCGGT........................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 08:22 PM