ID:

clust_1249_SLC38A1

 Coordinate:

chr12:46196799-46197025 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.4 -32.3 -32.1

Sense Strand Reads

GGACTCACAGATGTTATGCAGTCCACTGTTTCCATATGATTTCTAGTCATGTAACTCCTCCCTACAGCCCAGGGAACATGCAATGCCTTAATTAAAATGTCTGAGTTAGCTTAAATAGTCTTTTTTATTATTTGACAGATATGCTTTGGAACAACAGACCTGGATTCAAAAACTACCTTTCTATATTGGGATTCTTGTTTCCAGGTCTGGTGAAGTTCAAGGGCATCTTGAACGTGGTGCACTTGGAGACAGTGAGGGAAGCAGGGGTGAAGTGGCTGCTACCTGAGTCCCTTCTGGAGCTCCATTTTGCTTGGTCTTGGAGAAGGC
****************************************************************************************************************************................(((((((.((((..((((((((((..(((......((..........)).....)))..)))))))))).....)))).)))))))..*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139200
placenta		 RoviraIPAgo2
breast		 SRR330922
skin		 SRR139201
placenta		 SRR039190
blood		 SRR139209
testes		 SRR342894
heart		 SRR342896
heart		 SRR553572
frontal-cortex		 SRR139188
lung		 SRR139195
ovary		 SRR139206
spleen		 SRR139211
testes		 SRR139214
thymus		 SRR139216
thymus		 SRR191398
breast		 SRR191409
breast		 SRR191488
breast		 SRR191564
breast		 SRR191570
breast		 SRR191573
breast		 SRR191595
breast		 SRR191604
breast		 SRR191627
breast		 SRR191630
breast		 SRR342895
heart		 SRR342898
heart		 SRR553573
cerebellum		 TAX577579
breast		 SRR037876
fibroblast		 TAX577743
breast		 SRR330911
skin		 GSM450604
brain		 TAX577738
breast		 GSM450600
brain		 TAX577745
breast
...........................................TAGTCATGTAACTCCT............................................................................................................................................................................................................................................................................ 16 0 1 11.00 11 8 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGTGA.................................................................................................................. 23 0 1 9.00 9 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGTG................................................................................................................... 22 0 1 6.00 6 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGT.................................................................................................................... 21 0 1 5.00 5 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGTGT.................................................................................................................. 23 1 1 3.00 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CCTGAGTCCCTTCTGGAG............................ 18 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TATGCTTTGGAACAACAGACCTGGA................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGTGAAT................................................................................................................ 25 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GACAGATATGCTTTGGAACA.............................................................................................................................................................................. 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACAGACCTGGATTCAAAAACT......................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGTGAT................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGATTTCTAGTCATG.................................................................................................................................................................................................................................................................................... 15 0 10 1.00 10 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TGGTGCACTTGGAGACAGTGA........................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TAGTCATGTAACTCCTCC.......................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GATATGCTTTGGAACAACAGACCT...................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ATTTCTAGTCATGTAACTCCTCCCTACAGCCC................................................................................................................................................................................................................................................................. 32 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................GGAGACAGTGAGGGAAGCAGG.............................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGAACGTGGTGCACT.................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACAGACCTGGATTCAAAAACTA........................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTCTTGTTTCCAGGTCTGGTG................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGTTCTGGTG................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGTT................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGTA................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTTGTTTCCAGGTCTGGAGA.................................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TTGGAGACAGTGAGGGAA................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............TTATGCAGTCCGCTGTTT........................................................................................................................................................................................................................................................................................................ 18 1 4 0.50 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................GAAGTGGCTGGTACCTGA......................................... 18 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGAAGTGGCTGCTGCCTGAGC....................................... 21 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................CCAAGGGCATCTTGAACGTC........................................................................................... 20 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........TGTTATGCAGTCCGCCGGTT........................................................................................................................................................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................TCGGAAGCTTCATTTTGCTTGG............. 22 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........TGTTATGCCGTCCGCTGCTT........................................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................TCATCTTGAACGTGGTTCAGT.................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........AGTTATGCAGTCCGCCGTTT........................................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............TTATGCAGTCCTCTGGTTC....................................................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CCTGAGTGTCTACAATACGTCAGGTGACAAAGGTATACTAAAGATCAGTACATTGAGGAGGGATGTCGGGTCCCTTGTACGTTACGGAATTAATTTTACAGACTCAATCGAATTTATCAGAAAAAATAATAAACTGTCTATACGAAACCTTGTTGTCTGGACCTAAGTTTTTGATGGAAAGATATAACCCTAAGAACAAAGGTCCAGACCACTTCAAGTTCCCGTAGAACTTGCACCACGTGAACCTCTGTCACTCCCTTCGTCCCCACTTCACCGACGATGGACTCAGGGAAGACCTCGAGGTAAAACGAACCAGAACCTCTTCCG
***************************************************************************************************................(((((((.((((..((((((((((..(((......((..........)).....)))..)))))))))).....)))).)))))))..**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139162
brain		 SRR139190
lung		 SRR139199
placenta		 SRR139200
placenta		 SRR139201
placenta		 SRR039614
liver		 TAX577740
breast		 SRR191607
breast		 SRR039624
liver		 SRR095854
brain		 TAX577579
breast
.......................GTGACAAAGGTATACT................................................................................................................................................................................................................................................................................................ 16 0 5 3.00 15 5 0 5 5 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCAAGTTCCCGTAGAA.................................................................................................. 16 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
.....................AGGTGACAAAGGTAT................................................................................................................................................................................................................................................................................................... 15 0 6 1.00 6 0 6 0 0 0 0 0 0 0 0 0
...............................................................TGTCGGGCCCCGTGCACGTTAC.................................................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................TAGCCCGAAGAACAGAGGTCCAG........................................................................................................................ 23 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................TGACCTAAGTTTTTGATG....................................................................................................................................................... 18 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................AGCGTCCCTTGTACGTTACG................................................................................................................................................................................................................................................. 20 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................CCCACGTAACCGACGCTGGACT......................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................GGGATGTCGGGTC............................................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................GGGATGTCGGGTCC.............................................................................................................................................................................................................................................................. 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Generated: 04/21/2015 at 06:34 PM